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Application of metabolomics to plant genotype discrimination using statistics and machine learning
(2003)
Stomatal cell biology
(2003)
Offenlandmanagement durch kontrolliertes Brennen : ein Beitrag aus sozioökonomischer Perspektive
(2003)
Mixotrophy in the Antarctic phytoflagellate, Pyramimonas gelidicola (Chlorophyta: Prasinophyta)
(2003)
Grazing by the planktonic, phytoflagellate, Pyramimonas gelidicola McFadden (Chlorophyta: Prasinophyta), and heterotrophic nanoflagellates (HNAN) in meromictic, saline Ace Lake in the Vestfold Hills, Eastern Antarctica, was investigated in the austral summers of 1997 and 1999. Up to 47% of the P. gelidicola population ingested fluorescently labelled prey (FLP). Ingestion rates varied with depth. In January 1997 and November 1999, maximum P. gelidicola ingestion rates of 6.95 and 0.79 FLP;cell-1;h-1, respectively, were measured at the chemocline (6-8 m) where a deep chlorophyll maximum composed of phototrophic nanoflagellates (PNAN DCM), predominantly P. gelidicola, persisted all year. During the summers of 1997 and 1999, the grazing P. gelidicola community removed between 0.4 and approximately 16% of in situ bacterial biomass, equivalent to between 4 and >100% of in situ bacterial production. Due to their higher abundance, the community clearance rates of HNAN in Ace Lake generally exceeded those of P. gelidicola but HNAN removed approximately only 3 to 4% of bacterial biomass, equivalent to between 28 and 32% of bacterial production. P. gelidicola growth rates were highest at the PNAN DCM concomitant with the highest ingestion rates. It is estimated that during the summer P. gelidicola can derive up to 30% of their daily carbon requirements from bacterivory at the PNAN DCM. This study confirms mixotrophy as an important strategy by which planktonic organisms can survive in extreme, polar, lacustrine ecosystems.
South Africa's endemic Knysna seahorse, Hippocampus capensis Boulenger 1900, is a rare example of a marine fish listed as Endangered by the IUCN because of its limited range and habitat vulnerability. It is restricted to four estuaries on the southern coast of South Africa. This study reports on its biology in the Knysna and Swartvlei estuaries, both of which are experiencing heavy coastal development. We found that H. capensis was distributed heterogeneously throughout the Knysna Estuary, with a mean density of 0.0089 m-2 and an estimated total population of 89 000 seahorses (95% confidence interval: 30 000 to 148 000). H. capensis was found most frequently in low density vegetation stands ( 20% cover) and grasping Zostera capensis. Seahorse density was not otherwise correlated with habitat type or depth. The size of the area in which any particular seahorse was resighted did not differ between males and females. Adult sex ratios were skewed in most transects, with more males than females, but were even on a 10 m by 10 m focal study grid. Only three juveniles were sighted during the study. Both sexes were reproductively active but no greeting or courtship behaviours were observed. Males on the focal study grid were longer than females, and had shorter heads and longer tails, but were similar in colouration and skin filamentation. The level of threat to H. capensis and our limited knowledge of its biology mean that further scientific study is urgently needed to assist in developing sound management practices.
In recent years most studies of the benthic microbial food web have either been descriptive or were restricted to the measurement of within sediment process rates. Little is known about benthic-pelagic coupling processes such as recruitment. We, therefore, developed an ex situ core incubation procedure to quantify the potential for microbial recruitment from the benthos to the pelagic in an acidic mining lake, Mining Lake 111 (ML 111; pH 2.6), in eastern Germany. Our data suggest that considerable zooplankton recruitment from the benthos takes place. Heliozoan and rhizopod recruitment in both summer and winter sediment cores was highest when they were incubated at 20°C. Maximum heliozoan recruitment was 23 (± 9 s.e.) individuals cm-2 d-1 (40% initial standing stock daily) in the winter 20°C incubation. Maximum rhizopod recruitment was 6 (± 2 s.e.) individuals cm-2 d-1 in the summer 20°C incubation. Little or no recruitment was apparent for either taxa when winter cores were incubated at 5°C, implying a temperature cue. Conversely, the rotifer, Cephalodella hoodi, exhibited a maximum recruitment of 6 (± 2 s.e.) individuals cm-2 d-1 during the winter 5°C incubation, representing 30% of initial standing stock daily, but little recruitment when incubated at 20°C. Cephalodella may have responded to an increased winter benthic food supply; in situ winter Chl a concentrations in the benthos were 3.4 times higher than those in the summer. The importance of this was reinforced by the poor pelagic food supply available in ML 111. In situ, Heliozoa, rhizopods and Cephalodella were first observed in the epilimnion of ML 111 in spring or early summer, suggesting active or passive recruitment following lateral transport from littoral sediments. Benthic-pelagic coupling via recruitment is potentially important in understanding the pelagic food web in ML 111 and warrants further investigation in this and other aquatic environments.
Summary Using five different steps, ;-Galactosidase has been purified from kidney beans to apparent electrophoretic homogeniety with approximately 90-fold purificationwith a specific activity of 281 units mg;1 protein. A single bandwas observed in native PAGE. Activity staining of the native gel with 5-bromo4-chloro 3-indoxyl ;-D-galactopyranoside (X-Gal) at pH 4.0 also produceda single band. Analytical gel filtration in Superdex G-75 revealed the molecularmass of the native protein to be approximately 75 kD. 10 percnt; SDS-PAGE under reducingconditions showed two subunits of molecular masses, 45 and 30 kD, respectively.Hence, ;-galactosidase from kidney beans is a heterodimer. A typical proteinprofile with ;max at 280 nm was observed and A280/A260ratio was 1.52. The N-terminal sequence of the 45 kD band showed 86 percnt; sequencehomology with an Arabidopsis thaliana and 85 percnt; with Lycopersiconesculentum putative ;-galactosidase sequences. The Electrospray MassSpectrometric analysis of this band also revealed a peptide fragment that had90 percnt; sequence homology with an Arabidopsis thaliana putative ;- galactosidasesequence. The N-terminal sequencing of the 30 kD band as well as mass spectrometricanalysis both by MALDI- TOF and ES MS revealed certain sequences that matchedwith phytohemagglutinin of kidney beans. The optimum pH of the enzyme was 4.0and it hydrolysed o- and p-nitrophenyl ;-D galactopyranosidewith a Km value of 0.63 mmol/L and 0.74 mmol/L, respectively.The energy of activation calculated from the Arrhenius equation was 14.8 kcal/molenzyme site. The enzyme was found to be comparatively thermostable showing maximumactivity at 67 °C. Thermal denaturation of the enzyme at 65 °C obeyssingle exponential decay with first order-rate constant 0.105 min;1.Galactose, a hydrolytic product of this enzyme was a competitive inhibitor witha Ki of 2.7 mmol/L.
Rivers form the most important natural corridors through the landscape. Certain plant species grow mainly or exclusively in these corridors as it has been observed for about 150 years in Central European lowlands. However, these species do not form a homogenous group in terms of biogeography, site requirements, life form, or any other feature this distribution pattern. Accordingly, first, we give a review of the various hypotheses which have been proposed to explain the river corridor distribution pattern. This includes (1) river corridors acting as routes of migration or invasion, (2) floodplain-specific disturbance providing open sites, (3) temporary anoxic conditions during floods, (4) deviating meso-climatic conditions, (5) specific substrate and nutrient supply, and (6) water supply. In particular, the above hypotheses (2-5) imply that river corridor plants may be well-adapted to specific stress and regeneration conditions in floodplains while other species may be not. This may lead to reduced competition in river corridors. We suggest this mechanism to constitute actual benefits for river corridor plants. Secondly, we present a simple model of multi-species population dynamics to show, that our competition-related framework is, in principle, able to explain river corridor plant species distribution patterns. As, however, none of the above hypotheses (1-6) have been tested experimentally we thirdly present a currently running experimental study on the river corridor plant Juncus atratus (black rush) in north- eastern Germany. We emphasize that much more experimental evidence must be gained on population ecology and meta- population dynamics to understand the distribution patterns of river corridor plants.
Quenching of the triplet state of tryptophan by cysteine has provided a new tool for measuring the rate of forming a specific intramolecular contact in disordered polypeptides. Here, we use this technique to investigate contact formation in the denatured state of CspTm, a small cold-shock protein from Thermotoga maritima, engineered to contain a single tryptophan residue (W29) and a single cysteine residue at the C terminus (C67). At all concentrations of denaturant, the decay rate of the W29 triplet of the unfolded protein is more than tenfold faster than the rate observed for the native protein (not, vert, similar104 s;1). Experiments on the unfolded protein without the added C- terminal cysteine residue show that this faster rate results entirely from contact quenching by C67. The quenching rate in the unfolded state by C67 increases at concentrations of denaturant that favor folding, indicating a compaction of the unfolded protein as observed previously in single-molecule Foerster resonance energy transfer (FRET) experiments.
Recently, much ecological research has focused on predicting invasions of alien species in order to prevent potentially negative effects of such invasions. In this study, we utilize novel methods of landscape ecology for testing the hypothesis that increasing structural diversity correlates with an increasing number of alien plant species. Our overall findings support this hypothesis and suggest that in the studied area (RB Dessau, Sachsen Anhalt, Germany), species richness of neophytes is positively correlated with the diversity in land-use types and structures. However, this relationship between structural diversity and species diversity applied for native spe-cies, too. Furthermore, our results support findings of previous studies which show that neophytes occur mainly in artificially or naturally disturbed areas. Our overall findings highlight the use of landscape-scale ecological methods for studying plant distribution patterns.
The progesterone concentration in blood samples can be utilised as a marker for the diagnosis of early pregnancy, endocrinopathy and virilism. Here, we describe a method for progesterone detection and measurement in whole blood samples by a surface sensitive biosensor used in conjunction with an integrated optical grating coupler. This device determines refractive index changes near the biosensor's surface. Hence, biological species bound to a surface layer can be measured in real-time without any label. For the measurements, we have modified the indirect competitive immonoassay principle. The concentration of the progesterone antibody was kept at 1 µg/ml. Progesterone concentration was determined in buffer solution and whole blood in a range between 0.005 and 10 ng/ml. The detection limit was determined to be 3 pM. The relative standard deviation was calculated to be 3.5%.
The classical (Levins) metapopulation scenario envisions a species persisting in a network of habitat patches through a balance between frequent local (within-patch) extinctions and recolonizations. Although this is the dominant paradigm for species in fragmented habitats, empirical support is limited and it has been argued that very restrictive conditions on migration rates are required: high enough for recolonization to balance extinctions, but low enough that local populations do not fluctuate in synchrony. Through simulation and analysis of a stochastic spatial model, we argue that the likelihood of persistence via the classical scenario is strongly affected by some basic properties of within- patch successional dynamics whose importance has not been emphasized in metapopulation theory: the distribution of successional stage durations, and whether patches are "refractory" versus immediately available for recolonization after an extinction has occurred. These properties are tied to the biological causes of extinction (e.g., demographic accident versus regular successional changes) and patch recovery (e.g., recolonization by a host species versus regeneration of an exhausted resource base). Our results indicate that metapopulation theory needs to incorporate the patch-dynamics perspective of a landscape in a dynamic mosaic of successional states, with particular attention to links between colonization-extinction processes and local succession.
Bacteriophage Sf6 tailspike protein is functionally equivalent to the well characterized tailspike ofSalmonella phage P22, mediating attachment of the viral particle to host cell-surface polysaccharide. However, there is significant sequence similarity between the two 70-kDa polypeptides only in the N-terminal putative capsid-binding domains. The major, central part of P22 tailspike protein, which forms a parallel ;-helix and is responsible for saccharide binding and hydrolysis, lacks detectable sequence homology to the Sf6 protein. After recombinant expression in Escherichia coli as a soluble protein, the Sf6 protein was purified to homogeneity. As shown by circular dichroism and Fourier transform infrared spectroscopy, the secondary structure contents of Sf6 and P22 tailspike proteins are very similar. Both tailspikes are thermostable homotrimers and resist denaturation by SDS at room temperature. The specific endorhamnosidase activities of Sf6 tailspike protein toward fluorescence-labeled dodeca-, deca-, and octasaccharide fragments of Shigella O-antigen suggest a similar active site topology of both proteins. Upon deletion of the N-terminal putative capsid-binding domain, the protein still forms a thermostable, SDS-resistant trimer that has been crystallized. The observations strongly suggest that the tailspike of phage Sf6 is a trimeric parallel ;-helix protein with high structural similarity to its functional homolog from phage P22.
Microevolution is typically ignored as a factor directly affecting on-going population dynamics. We show here that density-dependent natural selection has a direct and measurable effect on a planktonic predator-prey interaction. We kept populations of Brachionus calyciflorus, a monogonont rotifer that exhibits cyclical parthenogenesis, in continuous flow-through cultures (chemostats) for > 900 days. Initially, females frequently produced male offspring, especially at high population densities. We observed rapid evolution, however, towards low propensity to reproduce sexually, and by 750 days, reproduction had become entirely asexual. There was strong selection favouring asexual reproduction because, under the turbulent chemostat regime, males were unable to mate with females, produced no offspring, and so had zero fitness. In replicated chemostat experiments we found that this evolutionary process directly influenced the population dynamics. We observed very specific yet reproducible plankton dynamics that are explained well by a mathematical model that explicitly includes evolution. This model accounts for both asexual and sexual reproduction and treats the propensity to reproduce sexually as a quantitative trait under selection. We suggest that a similar amalgam of ecological and evolutionary mechanisms may drive the dynamics of rapidly reproducing organisms in the wild.
Electrochemistry of immobilized CuZnSOD and FeSOD and their interaction with superoxide radicals
(2003)
Copper, zinc superoxide dismutase (CuZnSOD) from bovine erythrocytes and iron superoxide dismutase from Escherichia coli (FeSOD) were immobilized on 3-mercaptopropionic acid (MPA)-modified gold electrodes, respectively. The characterization of the SOD electrodes showed a quasi-reversible, electrochemical redox behavior with a formal potential of 47 ñ 4 mV and -154 ñ 5 mV (vs. Ag/AgCl, 1 M KCl) for surface adsorbed CuZnSOD and FeSOD, respectively. The heterogeneous electron transfer rate constants were determined to be about 65 and 35/s, respectively. Covalent fixation of both SODs was also feasible with only slight changes in the formal potential. The interaction of superoxide radicals (O2-) with the SOD electrode was investigated. No catalytic current could be observed. However, due to the fast cyclic reaction of SOD with superoxide, the communication of the protein with the electrode was strongly influenced. The amperometric detection of superoxide radicals is discussed.
A characteristic vertical sequence of phytoplankton populations was observed below the metalimnetic oxycline of a stratified, mesotrophic lake. Ceratium spp., Closterium acutum and Aphanizomenon flos- aquae were present in the epilimnion but had distinct population maxima in the microaerobic chemocline. Below these populations, Cryptomonas phaseolus, Planktothrix clathrata, Pseudanabaena catenata and Limnothrix sp. followed each other in the transition zone between the chemocline and the sulphide-containing hypolimnion. The dominating populations of P. clathrata and P. catenata caused a deep chlorophyll maximum. Phytoplankton structure was determined by the vertical gradients of sulphide and light. Compared with the epilimnion, nutrient availability was not fundamentally better below the oxycline but the algae might have benefited from reduced grazing pressure in their habitat.
1. Anthropogenic changes in the global climate are shifting the potential ranges of many plant species. 2. Changing climates will allow some species the opportunity to expand their range, others may experience a contraction in their potential range, while the current and future ranges of some species may not overlap. Our capacity to generalize about the threat these range shifts pose to plant diversity is limited by many sources of uncertainty. 3. In this paper we summarize sources of uncertainty for migration forecasts and suggest a research protocol for making forecasts in the context of uncertainty.
PURPOSE: CEACAM6, CEACAM1, and human carcinoembryonic antigen (CEA) are coexpressed in normal colorectal epithelia, but show deregulated expression in colorectal cancers (CRC). Upregulation of CEACAM6 expression in hyperplastic polyps and early adenomas represents one of the earliest observable molecular events leading to colorectal tumors. The aim of our study was to evaluate the prognostic relevance of CEACAM6, CEACAM1, and CEA tissue expression in patients with CRC. PATIENTS AND METHODS: Immunohistochemical analysis was carried out on tissue microarrays from 243 paraffin-embedded biopsies from a randomized controlled clinical trial (Swiss Group for Clinical Cancer Research [SAKK] 40/81) of adjuvant fluorouracil-based chemotherapy with CEACAM-specific monoclonal antibodies. The median follow-up was 8 years. Overall survival (OS) and disease-free survival (DFS) were calculated using Kaplan-Meier estimates and hazard ratios (HRs) estimated using Cox proportional hazards models. RESULTS: Tissue expression of CEACAM6, CEACAM1, and CEA was enhanced in 55%, 58%, and 94% of patients, respectively. Multivariate Cox analysis including sex, age, tumor site, stage, differentiation grade, treatment, and nodal status as covariates showed that CEACAM6 overexpression independently predicted poor OS (HR, 1.86; P =.0100) and DFS (HR, 2.00; P =.0028), whereas CEACAM1 or CEA were not significantly related to these outcomes. The data did not provide evidence for or against the hypothesis that the CEACAM6 effect on survival differs according to treatment. CONCLUSION: Expression of the cell adhesion molecule CEACAM6 in CRC is an independent prognostic factor allowing subdivision of patients into low- and high-risk groups. Whether CEACAM6 or CEA and CEACAM1 might be useful as predictive markers of chemotherapy benefit remains unclear.
Köderauslageintervalle und Dauer der Bekämpfung des Kleinen Fuchsbandwurms : eine Modellierstudie
(2003)
Exkursionsbericht "Exkursion zu den Lübbener Pfaffenbergen und Hartmannsdorfer Wiesen" am 20.07.2002
(2003)
Molecular recognition of cocaine by acetylcholinesterases for affinity purification and bio-sensing
(2003)
Herbivorous fish feed on cyanobacteria. Digestability differs, however, between cyanobacteria species without mucous cover and mucilaginous genera such as Microcystis. The latter can pass fish guts almost undamaged, and it has been hypothesized that they can take up nutrients during gut passage. Here we tested whether live Microcystis, as food for juvenile roach labeled with 33P, indeed showed higher radioactivity after gut passage as compared to gut contents in control experiments with fish fed heated Microcystis. Microcystis showed high viability after passage through roach guts, and live colonies had a significantly higher radioactivity than dead ones. We conclude that Microcystis is protected against digestion in roach guts and can directly use the phosphorus supplied in the fish guts during passage.
In order to investigate the behavior of single molecules under conditions far from equilibrium, we have coupled a microfabricated laminar-flow mixer to a confocal optical system. This combination enables time-resolved measurement of Foerster resonance energy transfer after an abrupt change in solution conditions. Observations of a small protein show the evolution of the intramolecular distance distribution as folding progresses. This technique can expose subpopulations, such as unfolded protein under conditions favoring the native structure, that would be obscured in equilibrium experiments.
Monoklonale Antikörper
(2003)
The nuclear SHL protein is composed of a N-terminal BAH domain and a C-terminal PHD finger. Both domains are found in transcriptional regulators and chromatin-modifying proteins. Arabidopsis plants over-expressing SHL showed earlier flowering and senescence phenotype. To identify SHL regulated genes, expression profiles of 35S::SHL plants were established with Affymetrix ATH1 microarrays. About 130 genes showed reduced transcript levels, and about 45 genes showed increased transcript levels in 35S:: SHL plants. The up-regulated genes included AGL20 and AGL9, which most likely cause the early flowering phenotype of 35S:: SHL plants. Late-flowering SHL-antisense lines showed reduced AGL20 mRNA levels, suggesting that AGL20 gene expression depends on the SHL protein. The stronger expression of senescence- and defence-related genes (such as DIN2, DIN11 and PR-1) is in line with the early senescence phenotype of SHL-over- expressing plants. SHL-down-regulated genes included stress response genes and the PSR3.2 gene (encoding a beta- glucosidase). SHL over-expression did not alter the tissue specificity of PSR3.2 gene expression, but resulted in reduced transcript levels in both shoots and roots. Plants with glucocorticoid-inducible SHL over-expression were established and used for expression profiling as well. A subset of genes was identified, which showed consistent changes in the inducible system and in plants with constitutive SHL over-expression
Detailed analysis of brassinosteroid (BR)-regulated genes can provide evidence of the molecular basis of BR effects. Classical techniques (such as subtractive cDNA cloning) as well as cDNA and oligonucleotide microarrays have been applied to identify genes which are upregulated or downregulated after BR treatment or are differently expressed in BR-deficient or -insensitive mutants compared with wild type plants. Genes encoding cell-wall-modifying enzymes, enzymes of the BR biosynthetic pathway, auxin response factors, and transcription factors are subject to BR regulation. Effects on several other metabolic pathways and interactions with other phytohormones have been reported as well, although some of these effects may depend on certain environmental conditions (for example, light/dark or stress), the developmental stage of the plants, and tissue types. The identification of components of the BR signal transduction pathway revealed different modes of transcriptional control in animals and plants. Steroid signaling in plants comprises the plasma membrane receptor kinases BRI1 and BAK1 and intracellular protein phosphorylations. Thus, BR signaling in plants is reminiscent of growth factor and TGF-beta signal transduction in animals. The phosphorylation cascade could be a basis of extensive signaling cross-talk and thereby explain the complexity of BR responses
Gaps are often important microhabitats for recruitment of herbaceous plants. In the Florida scrub, fires create gaps by top-killing resprouting shrubs. These natural gaps are aboveground gaps (without aboveground vegetation) that may also be complete gaps (if belowground roots and rhizomes are absent). Within three types of gaps (natural gaps, experimental aboveground and experimental complete gaps), we studied seedling recruitment and survival of spontaneous species and seven sown herbs for two years. We created aboveground gaps by clipping vegetation and complete gaps by removing shrub roots and rhizomes. These gaps occurred in two Florida scrub habitats: rosemary scrub and scrubby flatwoods. We also explored factors that can affect recruitment patterns in gaps, such as soil moisture, root water retention and light availability. In addition, we tested effects of supplemental watering on sown seeds in the field since drought in 2000 and 2001 suppressed natural seedling recruitment. The watering treatment increased recruitment in all types of gaps. Over half of all gaps were colonized, but there were few seedlings. Recruitment was highest in watered, complete gaps in scrubby flatwoods, where the soil moisture levels were higher and light levels lower than in the other gap types. Seedlings of a single spontaneously recruited species (Lechea deckertii) were more abundant than sown species. Locally common gap specialists were more abundant than generalists. Because many of these gap specialists are endangered plant species, understanding how disturbances create microsites for their regeneration is critical for conservation and management of the Florida scrub ecosystem. In small-scale conservation projects, artificially created gaps may substitute for post-fire gaps when prescribed burning is impossible.
Biosensoren
(2003)
Enzyme Electrodes
(2003)
CTLA-4 gene constructs were designed to express CTLA-4 exclusively in the endoplasmic reticulum (ER). Four different CTLA-4 gene constructs were transfected into HEK 293 (human embryonic kidney) and A20 (Balb/c mouse B lymphoma) cells. All constructs contained an ER retention signal and coded for CTLA-4 expression in the ER. One of the constructs, which contained the membrane part of CTLA-4, coded for an expression both on the cell surface and in the ER. Three of the expressed CTLA-4 types (including the ER-membrane-expressed form) caused a reduced surface expression of B7 in the A20 cells. Only constructs which allow dimerization of CTLA-4 showed this effect. It is assumed that intracellular CTLA-4 bound B7 and inhibited therefore the transport of B7 to the surface. The binding obviously caused also an enhanced degradation of the complexes because both proteins showed a low concentration in the transfected cell lines. CTLA-4-transfected and B7-reduced A20 cells showed a diminished costimulating activity upon T cells. This was demonstrated by a reduced proliferation of T cells from ovalbumin-immunized Balb/c mice, incubated with ovalbumin peptide-primed CTLA-4-transfected A20 cells.
Small-subunit (SSU) rRNA genes (rDNA) were amplified by PCR from a hot pool environmental DNA sample using Bacteria- or Archaea-specific rDNA primers. Unique rDNA types were identified by restriction fragment length polymorphism (RFLP) analysis and representative sequences were determined. Family 10 glycoside hydrolase consensus PCR primers were used to explore the occurrence and diversity of xylanase genes in the hot pool environmental DNA sample. Partial sequences for three different xylanases were obtained and genomic walking PCR (GWPCR), in combination with nested primer pairs, was used to obtained a unique 1,741-bp nucleotide sequence. Analysis of this sequence identified a putative XynA protein encoded by the xynA open reading frame. The single module novel xylanase shared sequence similarity to the family 10 glycoside hydrolases. The purified recombinant enzyme, XynA expressed in E. coli exhibited optimum activity at 100 degrees C and pH 6.0, and was extremely thermostable at 90 degrees C. The enzyme showed high specificity toward different xylans and xylooligosaccharides.
Mixotrophs combine resource use to outcompete specialists: Implications for aquatic food webs
(2003)
The majority of species can be grouped into those relying solely on photosynthesis (phototrophy) or those relying solely on the assimilation of organic substances (heterotrophy) to meet their requirements for energy and carbon. However, a special life history trait exists in which organisms combine both phototrophy and heterotrophy. Such 'mixotrophy' is a widespread phenomenon in aquatic habitats and is observed in many protozoan and metazoan organisms. The strategy requires investment in both photosynthetic and heterotrophic cellular apparatus, but the benefits must outweigh these costs. In accordance with the mechanistic resource competition theory, laboratory experiments revealed that pigmented mixotrophs combined light and prey as substitutable resources. Thereby, they reduced prey abundance below the critical food concentration of competing specialist grazers [Rothhaupt, K. O. (1996) Ecology 77, 716-724]. Here, we demonstrate for the first time the important consequences of this strategy for an aquatic community. In the illuminated surface strata of a lake, mixotrophs reduced prey abundance so steeply that grazers from higher trophic levels, consuming both the mixotrophs and their prey, could not persist. Thus, the mixotrophs escaped from both competition and grazing, and remained dominant. Furthermore, the mixotrophs structured the prey abundance along the vertical light gradient creating low densities near the surface and a pronounced maximum of their algal prey at depth. Such deep algal accumulations are typical features of nutrient poor aquatic habitats, previously explained by resource availability. We hypothesize instead that the mixotrophic grazing strategy is responsible for deep algal accumulations in many aquatic environments.
The fructose-1,6-bis(phosphate) aldolase isologous tetramer tightly associates through two different subunit interfaces defined by its 222 symmetry. Both single- and double-interfacial mutant aldolases have a destabilized quaternary structure, but there is little effect on the catalytic activity. These enzymes are however thermolabile. This study demonstrates the temperature-dependent dissociation of the mutant enzymes and determines the dissociation free energies of both mutant and native aldolase. Subunit dissociation is measured by sedimentation equilibrium in the analytical ultracentrifuge. At 25C the tetramerdimer dissociation constants for each single-mutant enzyme are similar, about 10 -6 M. For the double-mutant enzyme, sedimentation velocity experiments on sucrose density gradients support a tetramermonomer equilibrium. Furthermore, sedimentation equilibrium experiments determined a dissociation constant of 10- 15 M3 for the double-mutant enzyme. By the same methods the upper limit for the dissociation constant of wild-type aldolase A is approximately 10-28 M3, which indicates an extremely stable tetramer. The thermodynamic values describing monomer-tetramer and dimer-tetramer equilibria are analyzed with regard to possible cooperative interaction between the two subunit interfaces.
Species such as Dreissena polymorpha sometimes contribute substantially in the transfer of primary to secondary production. During the ontogenetic cycle, the reproductive investment of adult mussels is one of the main parameters that affect recruitment success. We studied how food quality and temperature affect the reproductive investment in term of egg mass of D. polymorpha in a lake by sampling mussels monthly from 4 m and 15 m depths. Temperature affected reproduction directly and also indirectly through the food. To assess whether temperature and/or food conditions led to the differences observed in mussels sampled from the two depths, mussels were reared in the laboratory under two different temperature regimes for 3 months, simulating the temperature of the lake at 4 m and 15 m depth. Possible effects of food quality were tested at each temperature using four diets differing in fatty acid composition. Temperature played an important role as a trigger for spawning, and the type of diet clearly affected the reproductive investment. When the heterokont chromophyte alga Nannochloropsis limnetica, which is rich in polyunsaturated fatty acids (PUFAs) and long-chained PUFAs (>C18), was fed to mussels, an increased egg mass was obtained. This result was in contrast to that found when the green alga Scenedesmus obliquus and the cyanobacterium Aphanothece sp., both of which are deficient in long-chained PUFAs, were offered as food to the mussels. Such a PUFA-dependent food quality may affect reproduction in lakes. Food quality effects vary seasonally in a lake and may be most important in summer, when low-food- quality green algae and cyanobacteria are abundant. The low biochemical quality of these blooms may affect at least the later period of gametogenesis of D. polymorpha, which reproduces from June to August.
Settlement on suitable substrata under favourable environmental conditions is an important factor for a successful recruitment of adult populations of Dreissena polymorpha. Therefore, the pattern of settlement of zebra mussel (Dreissena polymorpha) larvae at different depths was studied in Lake Constance. Maximum densities of larvae and newly settled juvenile mussels were observed at 4m depth, while only single settlement episodes were recorded at greater depths (15 m and 30 m). Temperature fluctuation was used as a surrogate parameter for internal seiches. Biotic and abiotic parameters were subjected to a principal component analysis (PCA). The tight coupling of the internal seiches, larval abundance and settlement at 4-m depth vs. the lack of coupling of the latter two variables at greater depths indicated that water currents transported settling larvae to the substrata at greater depth. Our data suggest that physical factors, such as boundary mixing and internal seiches, should be considered as sources of variability in settlement.
Biosensors which make use of the high specificity of enzymes, antibodies, and nucleic acids have been described for detection of numerous metabolites, hormones, and nucleic acid sequences. In addition to biological components nowadays biomimetic recognition molecules are also used. Especially antibodies, aptamers, and molecular imprints are promising biomimetics. They could broaden the range of detectable analytes and could increase the functional stability of the sensor. In this publication we describe the generation of biomimetic antibodies and biomimetic molecular imprints for binding creatinine and for hydrolyzing phenylcarbamates to be used in electrochemical sensors.
1. This is a discussion of the applicability to the phytoplankton of the concepts of 'Plant Functional Types' (PFTs) and 'Functional Diversity' (FD), which originated in terrestrial plant ecology. 2. Functional traits driving the performance of phytoplankton species reflect important processes such as growth, sedimentation, grazing losses and nutrient acquisition. 3. This paper presents an objective, mathematical way of assigning PFTs and measuring FD. Ecologists can use this new approach to investigate general hypotheses (e.g. the intermediate disturbance hypothesis (IDH), the insurance hypothesis and synchronicity phenomena), since, for example, in its original formulation the IDH makes its predictions based on FD rather than species diversity.
Ecological and evolutionary dynamics can occur on similar timescales. However, theoretical predictions of how rapid evolution can affect ecological dynamics are inconclusive and often depend on untested model assumptions. Here we report that rapid prey evolution in response to oscillating predator density affects predator-prey (rotifer-algal) cycles in laboratory microcosms. Our experiments tested explicit predictions from a model for our system that allows prey evolution. We verified the predicted existence of an evolutionary tradeoff between algal competitive ability and defence against consumption, and examined its effects on cycle dynamics by manipulating the evolutionary potential of the prey population. Single-clone algal cultures (lacking genetic variability) produced short cycle periods and typical quarter-period phase lags between prey and predator densities, whereas multi-clonal (genetically variable) algal cultures produced long cycles with prey and predator densities nearly out of phase, exactly as predicted. These results confirm that prey evolution can substantially alter predator-prey dynamics, and therefore that attempts to understand population oscillations in nature cannot neglect potential effects from ongoing rapid evolution.