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Mathematical modeling of molecular motors

  • Amongst the many complex processes taking place in living cells, transport of cargoes across the cytosceleton is fundamental to cell viability and activity. To move cargoes between the different cell parts, cells employ Molecular Motors. The motors operate by transporting cargoes along the so-called cellular micro-tubules, namely rope-like structures that connect, for instance, the cell-nucleus and outer membrane. We introduce a new Markov Chain, the killed Quasi-Random-Walk, for such transport molecules and derive properties like the maximal run length and time. Furthermore we introduce permuted balance, which is a more flexible extension of the ordinary reversibility and introduce the notion of Time Duality, which compares certain passage times pathwise. We give a number of sufficient conditions for Time Duality based on the geometry of the transition graph. Both notions are closely related to properties of the killed Quasi-Random-Walk.

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Metadaten
Verfasserangaben:Peter Keller
URN:urn:nbn:de:kobv:517-opus-63045
Schriftenreihe (Bandnummer):Preprints des Instituts für Mathematik der Universität Potsdam (2 (2013) 1)
Publikationstyp:Preprint
Sprache:Englisch
Erscheinungsjahr:2013
Veröffentlichende Institution:Universität Potsdam
Datum der Freischaltung:01.02.2013
Freies Schlagwort / Tag:Markov chain; absorption; molecular motor; time duality; transition path theory
Organisationseinheiten:Mathematisch-Naturwissenschaftliche Fakultät / Institut für Mathematik
DDC-Klassifikation:5 Naturwissenschaften und Mathematik / 51 Mathematik / 510 Mathematik
MSC-Klassifikation:60-XX PROBABILITY THEORY AND STOCHASTIC PROCESSES (For additional applications, see 11Kxx, 62-XX, 90-XX, 91-XX, 92-XX, 93-XX, 94-XX) / 60Gxx Stochastic processes / 60G17 Sample path properties
60-XX PROBABILITY THEORY AND STOCHASTIC PROCESSES (For additional applications, see 11Kxx, 62-XX, 90-XX, 91-XX, 92-XX, 93-XX, 94-XX) / 60Gxx Stochastic processes / 60G40 Stopping times; optimal stopping problems; gambling theory [See also 62L15, 91A60]
60-XX PROBABILITY THEORY AND STOCHASTIC PROCESSES (For additional applications, see 11Kxx, 62-XX, 90-XX, 91-XX, 92-XX, 93-XX, 94-XX) / 60Jxx Markov processes / 60J10 Markov chains (discrete-time Markov processes on discrete state spaces)
60-XX PROBABILITY THEORY AND STOCHASTIC PROCESSES (For additional applications, see 11Kxx, 62-XX, 90-XX, 91-XX, 92-XX, 93-XX, 94-XX) / 60Jxx Markov processes / 60J27 Continuous-time Markov processes on discrete state spaces
60-XX PROBABILITY THEORY AND STOCHASTIC PROCESSES (For additional applications, see 11Kxx, 62-XX, 90-XX, 91-XX, 92-XX, 93-XX, 94-XX) / 60Jxx Markov processes / 60J28 Applications of continuous-time Markov processes on discrete state spaces
Sammlung(en):Universität Potsdam / Schriftenreihen / Preprints des Instituts für Mathematik der Universität Potsdam, ISSN 2193-6943 / 2013
Lizenz (Deutsch):License LogoKeine öffentliche Lizenz: Unter Urheberrechtsschutz
Externe Anmerkung:RVK-Klassifikation: SI 990
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