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Recurrence plots, a rather promising tool of data analysis, have been introduced by Eckman et al. in 1987. They visualise recurrences in phase space and give an overview about the system's dynamics. Two features have made the method rather popular. Firstly they are rather simple to compute and secondly they are putatively easy to interpret. However, the straightforward interpretation of recurrence plots for some systems yields rather surprising results. For example indications of low dimensional chaos have been reported for stock marked data, based on recurrence plots. In this work we exploit recurrences or ``naturally occurring analogues'' as they were termed by E. Lorenz, to obtain three key results. One of which is that the most striking structures which are found in recurrence plots are hinged to the correlation entropy and the correlation dimension of the underlying system. Even though an eventual embedding changes the structures in recurrence plots considerably these dynamical invariants can be estimated independently of the special parameters used for the computation. The second key result is that the attractor can be reconstructed from the recurrence plot. This means that it contains all topological information of the system under question in the limit of long time series. The graphical representation of the recurrences can also help to develop new algorithms and exploit specific structures. This feature has helped to obtain the third key result of this study. Based on recurrences to points which have the same ``recurrence structure'', it is possible to generate surrogates of the system which capture all relevant dynamical characteristics, such as entropies, dimensions and characteristic frequencies of the system. These so generated surrogates are shadowed by a trajectory of the system which starts at different initial conditions than the time series in question. They can be used then to test for complex synchronisation.
One of the most striking features of ecological systems is their ability to undergo sudden outbreaks in the population numbers of one or a small number of species. The similarity of outbreak characteristics, which is exhibited in totally different and unrelated (ecological) systems naturally leads to the question whether there are universal mechanisms underlying outbreak dynamics in Ecology. It will be shown into two case studies (dynamics of phytoplankton blooms under variable nutrients supply and spread of epidemics in networks of cities) that one explanation for the regular recurrence of outbreaks stems from the interaction of the natural systems with periodical variations of their environment. Natural aquatic systems like lakes offer very good examples for the annual recurrence of outbreaks in Ecology. The idea whether chaos is responsible for the irregular heights of outbreaks is central in the domain of ecological modeling. This question is investigated in the context of phytoplankton blooms. The dynamics of epidemics in networks of cities is a problem which offers many ecological and theoretical aspects. The coupling between the cities is introduced through their sizes and gives rise to a weighted network which topology is generated from the distribution of the city sizes. We examine the dynamics in this network and classified the different possible regimes. It could be shown that a single epidemiological model can be reduced to a one-dimensional map. We analyze in this context the dynamics in networks of weighted maps. The coupling is a saturation function which possess a parameter which can be interpreted as an effective temperature for the network. This parameter allows to vary continously the network topology from global coupling to hierarchical network. We perform bifurcation analysis of the global dynamics and succeed to construct an effective theory explaining very well the behavior of the system.
This thesis analyses synchronization phenomena occurring in large ensembles of interacting oscillatory units. In particular, the effects of nonisochronicity (frequency dependence on the oscillator's amplitude) on the macroscopic transition to synchronization are studied in detail. The new phenomena found (Anomalous Synchronization) are investigated in populations of oscillators as well as between oscillator's ensembles.
We calculate the additional carbon emissions as a result of the conversion of natural land in a process of urbanisation; and the change of carbon flows by “urbanised” ecosystems, when the atmospheric carbon is exported to the neighboring territories, from 1980 till 2050 for the eight regions of the world. As a scenario we use combined UN and demographic model′s prognoses for regional total and urban population growth. The calculations of urban areas dynamics are based on two models: the regression model and the Gamma-model. The urbanised area is sub-divided on built-up, „green“ (parks, etc.) and informal settlements (favelas) areas. The next step is to calculate the regional and world dynamics of carbon emission and export, and the annual total carbon balance. Both models give similar results with some quantitative differences. In the first model, the world annual emissions attain a maximum of 205 MtC/year between 2020-2030. Emissions will then slowly decrease. The maximum contributions are given by China and the Asia and Pacific regions. In the second model, world annual emissions increase to 1.25 GtC in 2005, beginning to decrease afterwards. If we compare the emission maximum with the annual emission caused by deforestation, 1.36GtC per year, then we can say that the role of urbanised territories (UT) is of a comparable magnitude. Regarding the world annual export of carbon by UT, we observe its monotonous growth by three times, from 24 MtC to 66 MtC in the first model, and from 249 MtC to 505 MtC in the second one. The latter, is therefore comparable to the amount of carbon transported by rivers into the ocean (196-537 MtC). By estimating the total balance we find that urbanisation shifts the total balance towards a “sink” state. The urbanisation is inhibited in the interval 2020-2030, and by 2050 the growth of urbanised areas would almost stop. Hence, the total emission of natural carbon at that stage will stabilise at the level of the 1980s (80 MtC per year). As estimated by the second model, the total balance, being almost constant until 2000, then starts to decrease at an almost constant rate. We can say that by the end of the XXI century, the total carbon balance will be equal to zero, when the exchange flows are fully balanced, and may even be negative, when the system begins to take up carbon from the atmosphere, i.e., becomes a “sink”.
My thesis is concerned with several new noise-induced phenomena in excitable neural models, especially those with FitzHugh-Nagumo dynamics. In these effects the fluctuations intrinsically present in any complex neural network play a constructive role and improve functionality. I report the occurrence of Vibrational Resonance in excitable systems. Both in an excitable electronic circuit and in the FitzHugh-Nagumo model, I show that an optimal amplitude of high-frequency driving enhances the response of an excitable system to a low-frequency signal. Additionally, the influence of additive noise and the interplay between Stochastic and Vibrational Resonance is analyzed. Further, I study systems which combine both oscillatory and excitable properties, and hence intrinsically possess two internal frequencies. I show that in such a system the effect of Stochastic Resonance can be amplified by an additional high-frequency signal which is in resonance with the oscillatory frequency. This amplification needs much lower noise intensities than for conventional Stochastic Resonance in excitable systems. I study frequency selectivity in noise-induced subthreshold signal processing in a system with many noise-supported stochastic attractors. I show that the response of the coupled elements at different noise levels can be significantly enhanced or reduced by forcing some elements into resonance with these new frequencies which correspond to appropriate phase-relations. A noise-induced phase transition to excitability is reported in oscillatory media with FitzHugh-Nagumo dynamics. This transition takes place via noise-induced stabilization of a deterministically unstable fixed point of the local dynamics, while the overall phase-space structure of the system is maintained. The joint action of coupling and noise leads to a different type of phase transition and results in a stabilization of the system. The resulting noise-induced regime is shown to display properties characteristic of excitable media, such as Stochastic Resonance and wave propagation. This effect thus allows the transmission of signals through an otherwise globally oscillating medium. In particular, these theoretical findings suggest a possible mechanism for suppressing undesirable global oscillations in neural networks (which are usually characteristic of abnormal medical conditions such as Parkinson′s disease or epilepsy), using the action of noise to restore excitability, which is the normal state of neuronal ensembles.
Concerns have been raised that anthropogenic climate change could lead to large-scale singular climate events, i.e., abrupt nonlinear climate changes with repercussions on regional to global scales. One central goal of this thesis is the development of models of two representative components of the climate system that could exhibit singular behavior: the Atlantic thermohaline circulation (THC) and the Indian monsoon. These models are conceived so as to fulfill the main requirements of integrated assessment modeling, i.e., reliability, computational efficiency, transparency and flexibility. The model of the THC is an interhemispheric four-box model calibrated against data generated with a coupled climate model of intermediate complexity. It is designed to be driven by global mean temperature change which is translated into regional fluxes of heat and freshwater through a linear down-scaling procedure. Results of a large number of transient climate change simulations indicate that the reduced-form THC model is able to emulate key features of the behavior of comprehensive climate models such as the sensitivity of the THC to the amount, regional distribution and rate of change in the heat and freshwater fluxes. The Indian monsoon is described by a novel one-dimensional box model of the tropical atmosphere. It includes representations of the radiative and surface fluxes, the hydrological cycle and surface hydrology. Despite its high degree of idealization, the model satisfactorily captures relevant aspects of the observed monsoon dynamics, such as the annual course of precipitation and the onset and withdrawal of the summer monsoon. Also, the model exhibits the sensitivity to changes in greenhouse gas and sulfate aerosol concentrations that are known from comprehensive models. A simplified version of the monsoon model is employed for the identification of changes in the qualitative system behavior against changes in boundary conditions. The most notable result is that under summer conditions a saddle-node bifurcation occurs at critical values of the planetary albedo or insolation. Furthermore, the system exhibits two stable equilibria: besides the wet summer monsoon, a stable state exists which is characterized by a weak hydrological cycle. These results are remarkable insofar, as they indicate that anthropogenic perturbations of the planetary albedo such as sulfur emissions and/or land-use changes could destabilize the Indian summer monsoon. The reduced-form THC model is employed in an exemplary integrated assessment application. Drawing on the conceptual and methodological framework of the tolerable windows approach, emissions corridors (i.e., admissible ranges of CO2- emissions) are derived that limit the risk of a THC collapse while considering expectations about the socio-economically acceptable pace of emissions reductions. Results indicate, for example, a large dependency of the width of the emissions corridor on climate and hydrological sensitivity: for low values of climate and/or hydrological sensitivity, the corridor boundaries are far from being transgressed by any plausible emissions scenario for the 21st century. In contrast, for high values of both quantities low non-intervention scenarios leave the corridor already in the early decades of the 21st century. This implies that if the risk of a THC collapse is to be kept low, business-as-usual paths would need to be abandoned within the next two decades. All in all, this thesis highlights the value of reduced-form modeling by presenting a number of applications of this class of models, ranging from sensitivity and bifurcation analysis to integrated assessment. The results achieved and conclusions drawn provide a useful contribution to the scientific and policy debate about the consequences of anthropogenic climate change and the long-term goals of climate protection. --- Anmerkung: Die Autorin ist Trägerin des von der Mathematisch-Naturwissenschaftlichen Fakultät der Universität Potsdam vergebenen Michelson-Preises für die beste Promotion des Jahres 2003/2004.
A polymer is a large molecule made up of many elementary chemical units, joined together by covalent bonds (for example, polyethylene). Polyelectrolytes (PELs) are polymer chains containing a certain amount of ionizable monomers. With their specific properties PELs acquire big importance in molecular and cell biology as well as in technology. Compared to neutral polymers the theory of PELs is less understood. In particular, this is valid for PELs in poor solvents. A poor solvent environment causes an effective attraction between monomers. Hence, for PELs in a poor solvent, there occurs a competition between attraction and repulsion. Strong or quenched PELs are completely dissociated at any accessible pH. The position of charges along the chain is fixed by chemical synthesis. On the other hand, in weak or annealed PELs dissociation of charges depends on solution pH. For the first time the simulation results have given direct evidence that at rather poor solvents an annealed PEL indeed undergoes a first-order phase transition when the chemical potential (solution pH) reaches at a certain value. The discontinuous transition occurs between a weakly charged compact globular structure and a strongly charged stretched configuration. At not too poor solvents theory predicts that globule would become unstable with respect to the formation of pearl-necklaces. The results show that pearl-necklaces exist in annealed PELs indeed. Furthermore, as predicted by theory, the simulation results have shown that annealed PELs display a sharp transition from a highly charged stretched state to a weakly charged globule at a critical salt concentration.
Die vorliegende Arbeit beschäftigt sich mit der Charakterisierung von Seismizität anhand von Erdbebenkatalogen. Es werden neue Verfahren der Datenanalyse entwickelt, die Aufschluss darüber geben sollen, ob der seismischen Dynamik ein stochastischer oder ein deterministischer Prozess zugrunde liegt und was daraus für die Vorhersagbarkeit starker Erdbeben folgt. Es wird gezeigt, dass seismisch aktive Regionen häufig durch nichtlinearen Determinismus gekennzeichent sind. Dies schließt zumindest die Möglichkeit einer Kurzzeitvorhersage ein. Das Auftreten seismischer Ruhe wird häufig als Vorläuferphaenomen für starke Erdbeben gedeutet. Es wird eine neue Methode präsentiert, die eine systematische raumzeitliche Kartierung seismischer Ruhephasen ermöglicht. Die statistische Signifikanz wird mit Hilfe des Konzeptes der Ersatzdaten bestimmt. Als Resultat erhält man deutliche Korrelationen zwischen seismischen Ruheperioden und starken Erdbeben. Gleichwohl ist die Signifikanz dafür nicht hoch genug, um eine Vorhersage im Sinne einer Aussage über den Ort, die Zeit und die Stärke eines zu erwartenden Hauptbebens zu ermöglichen.
This thesis presents new approaches to evolutions of binary black hole systems in numerical relativity. We analyze and compare evolutions from various physically motivated initial data sets, in particular presenting the first evolutions of Thin Sandwich data generated by the Meudon group. For the first time two different quasi-circular orbit initial data sequences are compared through fully 3d numerical evolutions: Puncture data and Thin Sandwich data (TSD) based on a helical killing vector ansatz. The two different sets are compared in terms of the physical quantities that can be measured from the numerical data, and in terms of their evolutionary behavior. The evolutions demonstrate that for the latter, "Meudon" datasets, the black holes do in fact orbit for a longer amount of time before they merge, in comparison with Puncture data from the same separation. This indicates they are potentially better estimates of quasi-circular orbit parameters. The merger times resulting from the numerical simulations are consistent with independent Post-Newtonian estimates that the final plunge phase of a black hole inspiral should take 60% of an orbit.
This work incorporates three treatises which are commonly concerned with a stochastic theory of the Lyapunov exponents. With the help of this theory universal scaling laws are investigated which appear in coupled chaotic and disordered systems. First, two continuous-time stochastic models for weakly coupled chaotic systems are introduced to study the scaling of the Lyapunov exponents with the coupling strength (coupling sensitivity of chaos). By means of the the Fokker-Planck formalism scaling relations are derived, which are confirmed by results of numerical simulations. Next, coupling sensitivity is shown to exist for coupled disordered chains, where it appears as a singular increase of the localization length. Numerical findings for coupled Anderson models are confirmed by analytic results for coupled continuous-space Schrödinger equations. The resulting scaling relation of the localization length resembles the scaling of the Lyapunov exponent of coupled chaotic systems. Finally, the statistics of the exponential growth rate of the linear oscillator with parametric noise are studied. It is shown that the distribution of the finite-time Lyapunov exponent deviates from a Gaussian one. By means of the generalized Lyapunov exponents the parameter range is determined where the non-Gaussian part of the distribution is significant and multiscaling becomes essential.
This thesis describes the development and application of the impacts module of the ICLIPS model, a global integrated assessment model of climate change. The presentation of the technical aspects of this model component is preceded by a discussion of the sociopolitical context for model-based integrated assessments, which defines important requirements for the specification of the model. Integrated assessment of climate change comprises a broad range of scientific efforts to support the decision-making about objectives and measures for climate policy, whereby many different approaches have been followed to provide policy-relevant information about climate impacts. Major challenges in this context are the large diversity of the relevant spatial and temporal scales, the multifactorial causation of many climate impacts', considerable scientific uncertainties, and the ambiguity associated with unavoidable normative evaluations. A hierarchical framework is presented for structuring climate impact assessments that reflects the evolution of their practice and of the underlying theory. Integrated assessment models of climate change (IAMs) are scientific tools that contain simplified representations of the relevant components of the coupled society-climate system. The major decision-analytical frameworks for IAMs are evaluated according to their ability to address important aspects of the pertinent social decision problem. The guardrail approach is presented as an inverse' framework for climate change decision support, which aims to identify the whole set of policy strategies that are compatible with a set of normatively specified constraints (guardrails'). This approach combines, to a certain degree, the scientific rigour and objectivity typical of predictive approaches with the ability to consider virtually all decision options that is at the core of optimization approaches. The ICLIPS model is described as the first IAM that implements the guardrail approach. The representation of climate impacts is a key concern in any IAM. A review of existing IAMs reveals large differences in the coverage of impact sectors, in the choice of the impact numeraire(s), in the consideration of non-climatic developments, including purposeful adaptation, in the handling of uncertainty, and in the inclusion of singular events. IAMs based on an inverse approach impose specific requirements to the representation of climate impacts. This representation needs to combine a level of detail and reliability that is sufficient for the specification of impact guardrails with the conciseness and efficiency that allows for an exploration of the complete domain of plausible climate protection strategies. Large-scale singular events can often be represented by dynamic reduced-form models. This approach, however, is less appropriate for regular impacts where the determination of policy-relevant results generally needs to consider the heterogeneity of climatic, environmental, and socioeconomic factors at the local or regional scale. Climate impact response functions (CIRFs) are identified as the most suitable reduced-form representation of regular climate impacts in the ICLIPS model. A CIRF depicts the aggregated response of a climate-sensitive system or sector as simulated by a spatially explicit sectoral impact model for a representative subset of plausible futures. In the CIRFs presented here, global mean temperature and atmospheric CO2 concentration are used as predictors for global and regional impacts on natural vegetation, agricultural crop production, and water availability. Application of a pattern scaling technique makes it possible to consider the regional and seasonal patterns in the climate anomalies simulated by several general circulation models while ensuring the efficiency of the dynamic model components. Efforts to provide quantitative estimates of future climate impacts generally face a trade-off between the relevance of an indicator for stakeholders and the exactness with which it can be determined. A number of non-monetary aggregated impact indicators for the CIRFs is presented, which aim to strike the balance between these two conflicting goals while taking into account additional constraints of the ICLIPS modelling framework. Various types of impact diagrams are used for the visualization of CIRFs, each of which provides a different perspective on the impact result space. The sheer number of CIRFs computed for the ICLIPS model precludes their comprehensive presentation in this thesis. Selected results referring to changes in the distribution of biomes in different biogeographical regions, in the agricultural potential of various countries, and in the water availability in selected major catchments are discussed. The full set of CIRFs is accessible via the ICLIPS Impacts Tool, a graphical user interface that provides convenient access to more than 100,000 impact diagrams developed for the ICLIPS model. The technical aspects of the software are described as well as the accompanying database of CIRFs. The most important application of CIRFs is in inverse' mode, where they are used to translate impact guardrails into simultaneous constraints for variables from the optimizing ICLIPS climate-economy model. This translation is facilitated by algorithms for the computation of reachable climate domains and for the parameterized approximation of admissible climate windows derived from CIRFs. The comprehensive set of CIRFs, together with these algorithms, enables the ICLIPS model to flexibly explore sets of climate policy strategies that explicitly comply with impact guardrails specified in biophysical units. This feature is not found in any other intertemporally optimizing IAM. A guardrail analysis with the integrated ICLIPS model is described that applies selected CIRFs for ecosystem changes. So-called necessary carbon emission corridors' are determined for a default choice of normative constraints that limit global vegetation impacts as well as regional mitigation costs, and for systematic variations of these constraints. A brief discussion of recent developments in integrated assessment modelling of climate change connects the work presented here with related efforts.
In this thesis the gravitational lensing effect is used to explore a number of cosmological topics. We determine the time delay in the gravitationally lensed quasar system HE1104-1805 using different techniques. We obtain a time delay Delta_t(A-B) Delta_t(A-B) =-310 +- 20 days (2 sigma errors) between the two components. We also study the double quasar Q0957+561 during a three years monitoring campaign. The fluctuations we find in the difference light curves are completely consistent with noise and no microlensing is needed to explain these fluctuations. Microlensing is also studied in the quadruple quasar Q2237+0305 during the GLITP collaboration (Oct.1999-Feb.2000). We use the absence of a strong microlensing signal to obtain an upper limit of v=600 km/s for the effective transverse velocity of the lens galaxy (considering microlenses with 0.1 solar masses). The distribution of dark matter in galaxy clusters is also studied in the second part of the thesis. In the cluster of galaxies Cl0024+1654 we obtain a mass-to-light ratio of M/L = 200 M_sun/L_sun (within a radius of 3 arcminutes). In the galaxy cluster RBS380 we find a relatively low X-ray luminosity for a massive cluster of L =2*10^(44) erg/s, but a rich distribution of galaxies in the optical band.
The correlations between the chemical structures of the 2,5-diphenyl-1,3,4-oxadiazole compounds and their corresponding vapour deposited film structures on Si/SiO2 were systematically investigated with AFM, XSR and IR for the first time. The result shows that the film structure depends strongly on the substrate temperature (Ts). For the compounds with ether bridge group, the film periodicity depends linearly on the length of the aliphatic chain. The films based on those oxadiazols have ordered structure in the investigated substrate temperature region, while die amide bridged compounds form ordered film only at high Ts due to the formation of intermolecular H-bond. The tilt angle of most molecules is determined by the pi-pi complexes between the molecules. The intermolecular interaction between head groups leads to the structural transformation during the thermal treatment after deposition. All the ether bridged oxadiazoles form films with bilayer structure, while amide bridged oxadiazole form film bilayer structure only when the molecule has a head group.
This thesis deals with the encoding and transmission of information through a quantum channel. A quantum channel is a quantum mechanical system whose state is manipulated by a sender and read out by a receiver. The individual state of the channel represents the message. The two topics of the thesis comprise 1) the possibility of compressing a message stored in a quantum channel without loss of information and 2) the possibility to communicate a message directly from one party to another in a secure manner, that is, a third party is not able to eavesdrop the message without being detected. The main results of the thesis are the following. A general framework for variable-length quantum codes is worked out. These codes are necessary to make lossless compression possible. Due to the quantum nature of the channel, the encoded messages are in general in a superposition of different lengths. It is found to be impossible to compress a quantum message without loss of information if the message is not apriori known to the sender. In the other case it is shown that lossless quantum data compression is possible and a lower bound on the compression rate is derived. Furthermore, an explicit compression scheme is constructed that works for arbitrarily given source message ensembles. A quantum cryptographic protocol - the “ping-pong protocol” - is presented that realizes the secure direct communication of classical messages through a quantum channel. The security of the protocol against arbitrary eavesdropping attacks is proven for the case of an ideal quantum channel. In contrast to other quantum cryptographic protocols, the ping-pong protocol is deterministic and can thus be used to transmit a random key as well as a composed message. The protocol is perfectly secure for the transmission of a key, and it is quasi-secure for the direct transmission of a message. The latter means that the probability of successful eavesdropping exponentially decreases with the length of the message.
We study the effect on the elastic properties of lipid membranes induced by anchoring of long hydrophilic polymers. Theoretically, two limiting regimes for the membrane spontaneous curvature are expected : i) at low surface polymer concentration (mushroom regime) the spontaneous curvature should scale linearly with the surface density of anchored polymers; ii) at high coverage (brush regime) the dependence should be quadratic. We attempt to test the predictions for the brush regime by monitoring the morphological changes induced on giant vesicles. As long polymers we use fluorescently labeled λ-phage DNA molecules which are attached to biotinylated lipid vesicles with a biotin-avidin-biotin linkage. By varying the amount of biotinylated lipid in the membrane we control the surface concentration of the anchors. The amount of anchored DNA to the membrane is quantified with fluorescence measurements. Changes in the elastic properties of the membrane as DNA grafts to it are monitored via analysis of the vesicle fluctuations. The spontaneous curvature of the membrane increases as a function of the surface coverage. At higher grafting concentrations the vesicles bud. The size of the buds can also be used to assess the membrane curvature. The effect on the bending stiffness is a subject of further investigation.
The theory of atomic Boson-Fermion mixtures in the dilute limit beyond mean-field is considered in this thesis. Extending the formalism of quantum field theory we derived expressions for the quasi-particle excitation spectra, the ground state energy, and related quantities for a homogenous system to first order in the dilute gas parameter. In the framework of density functional theory we could carry over the previous results to inhomogeneous systems. We then determined to density distributions for various parameter values and identified three different phase regions: (i) a stable mixed regime, (ii) a phase separated regime, and (iii) a collapsed regime. We found a significant contribution of exchange-correlation effects in the latter case. Next, we determined the shift of the Bose-Einstein condensation temperature caused by Boson-Fermion interactions in a harmonic trap due to redistribution of the density profiles. We then considered Boson-Fermion mixtures in optical lattices. We calculated the criterion for stability against phase separation, identified the Mott-insulating and superfluid regimes both, analytically within a mean-field calculation, and numerically by virtue of a Gutzwiller Ansatz. We also found new frustrated ground states in the limit of very strong lattices. ----Anmerkung: Der Autor ist Träger des durch die Physikalische Gesellschaft zu Berlin vergebenen Carl-Ramsauer-Preises 2004 für die jeweils beste Dissertation der vier Universitäten Freie Universität Berlin, Humboldt-Universität zu Berlin, Technische Universität Berlin und Universität Potsdam.
Transport processes in and of cells are of major importance for the survival of the organism. Muscles have to be able to contract, chromosomes have to be moved to opposing ends of the cell during mitosis, and organelles, which are compartments enclosed by membranes, have to be transported along molecular tracks. Molecular motors are proteins whose main task is moving other molecules.For that purpose they transform the chemical energy released in the hydrolysis of ATP into mechanical work. The motors of the cytoskeleton belong to the three super families myosin, kinesin and dynein. Their tracks are filaments of the cytoskeleton, namely actin and the microtubuli. Here, we examine stochastic models which are used for describing the movements of these linear molecular motors. The scale of the movements comprises the regime of single steps of a motor protein up to the directed walk along a filament. A single step bridges around 10 nm, depending on the protein, and takes about 10 ms, if there is enough ATP available. Our models comprise M states or conformations the motor can attain during its movement along a one-dimensional track. At K locations along the track transitions between the states are possible. The velocity of the protein depending on the transition rates between the single states can be determined analytically. We calculate this velocity for systems of up to four states and locations and are able to derive a number of rules which are helpful in estimating the behaviour of an arbitrary given system. Beyond that we have a look at decoupled subsystems, i.e., one or a couple of states which have no connection to the remaining system. With a certain probability a motor undergoes a cycle of conformational changes, with another probability an independent other cycle. Active elements in real transport processes by molecular motors will not be limited to the transitions between the states. In distorted networks or starting from the discrete Master equation of the system, it is possible to specify horizontal rates, too, which furthermore no longer have to fulfill the conditions of detailed balance. Doing so, we obtain unique, complete paths through the respective network and rules for the dependence of the total current on all the rates of the system. Besides, we view the time evolutions for given initial distributions. In enzymatic reactions there is the idea of a main pathway these reactions follow preferably. We determine optimal paths and the maximal flow for given networks. In order to specify the dependence of the motor's velocity on its fuel ATP, we have a look at possible reaction kinetics determining the connection between unbalanced transitions rates and ATP-concentration. Depending on the type of reaction kinetics and the number of unbalanced rates, we obtain qualitatively different curves connecting the velocity to the ATP-concentration. The molecular interaction potentials the motor experiences on its way along its track are unknown. We compare different simple potentials and the effects the localization of the vertical rates in the network model has on the transport coefficients in comparison to other models.
Movements of processive cytoskeletal motors are characterized by an interplay between directed motion along filament and diffusion in the surrounding solution. In the present work, these peculiar movements are studied by modeling them as random walks on a lattice. An additional subject of our studies is the effect of motor-motor interactions on these movements. In detail, four transport phenomena are studied: (i) Random walks of single motors in compartments of various geometries, (ii) stationary concentration profiles which build up as a result of these movements in closed compartments, (iii) boundary-induced phase transitions in open tube-like compartments coupled to reservoirs of motors, and (iv) the influence of cooperative effects in motor-filament binding on the movements. All these phenomena are experimentally accessible and possible experimental realizations are discussed.
The present work investigates the structure formation and wetting in two dimensional (2D) Langmuir monolayer phases in local thermodynamic equilibrium. A Langmuir monolayer is an isolated 2D system of surfactants at the air/water interface. It exhibits crystalline, liquid crystalline, liquid and gaseous phases differing in positional and/or orientational order. Permanent electric dipole moments of the surfactants lead to a long range repulsive interaction and to the formation of mesoscopic patterns. An interaction model is used describing the structure formation as a competition between short range attraction (bare line tension) and long range repulsion (surface potentials) on a scale Delta. Delta has the meaning of a dividing length between the short and long range interaction. In the present work the thermodynamic equilibrium conditions for the shape of two phase boundary lines (Young-Laplace equation) and three phase intersection points (Young′s condition) are derived and applied to describe experimental data: The line tension is measured by pendant droplet tensiometry. The bubble shape and size of 2D foams is calculated numerically and compared to experimental foams. Contact angles are measured by fitting numerical solutions of the Young-Laplace equation on micron scale. The scaling behaviour of the contact angle allows to measure a lower limit for Delta. Further it is discussed, whether in biological membranes wetting transitions are a way in order to control reaction kinetics. Studies performed in our group are discussed with respect to this question in the framework of the above mentioned theory. Finally the apparent violation of Gibbs′ phase rule in Langmuir monolayers (non-horizontal plateau of the surface pressure/area-isotherm, extended three phase coexistence region in one component systems) is investigated quantitatively. It has been found that the most probable explanation are impurities within the system whereas finite size effects or the influence of the long range electrostatics can not explain the order of magnitude of the effect.
One of the rules-of-thumb of colloid and surface physics is that most surfaces are charged when in contact with a solvent, usually water. This is the case, for instance, in charge-stabilized colloidal suspensions, where the surface of the colloidal particles are charged (usually with a charge of hundreds to thousands of e, the elementary charge), monolayers of ionic surfactants sitting at an air-water interface (where the water-loving head groups become charged by releasing counterions), or bilayers containing charged phospholipids (as cell membranes). In this work, we look at some model-systems that, although being a simplified version of reality, are expected to capture some of the physical properties of real charged systems (colloids and electrolytes). We initially study the simple double layer, composed by a charged wall in the presence of its counterions. The charges at the wall are smeared out and the dielectric constant is the same everywhere. The Poisson-Boltzmann (PB) approach gives asymptotically exact counterion density profiles around charged objects in the weak-coupling limit of systems with low-valent counterions, surfaces with low charge density and high temperature (or small Bjerrum length). Using Monte Carlo simulations, we obtain the profiles around the charged wall and compare it with both Poisson-Boltzmann (in the low coupling limit) and the novel strong coupling (SC) theory in the opposite limit of high couplings. In the latter limit, the simulations show that the SC leads in fact to asymptotically correct density profiles. We also compare the Monte Carlo data with previously calculated corrections to the Poisson-Boltzmann theory. We also discuss in detail the methods used to perform the computer simulations. After studying the simple double layer in detail, we introduce a dielectric jump at the charged wall and investigate its effect on the counterion density distribution. As we will show, the Poisson-Boltzmann description of the double layer remains a good approximation at low coupling values, while the strong coupling theory is shown to lead to the correct density profiles close to the wall (and at all couplings). For very large couplings, only systems where the difference between the dielectric constants of the wall and of the solvent is small are shown to be well described by SC. Another experimentally relevant modification to the simple double layer is to make the charges at the plane discrete. The counterions are still assumed to be point-like, but we constraint the distance of approach between ions in the plane and counterions to a minimum distance D. The ratio between D and the distance between neighboring ions in the plane is, as we will see, one of the important quantities in determining the influence of the discrete nature of the charges at the wall over the density profiles. Another parameter that plays an important role, as in the previous case, is the coupling as we will demonstrate, systems with higher coupling are more subject to discretization effects than systems with low coupling parameter. After studying the isolated double layer, we look at the interaction between two double layers. The system is composed by two equally charged walls at distance d, with the counterions confined between them. The charge at the walls is smeared out and the dielectric constant is the same everywhere. Using Monte-Carlo simulations we obtain the inter-plate pressure in the global parameter space, and the pressure is shown to be negative (attraction) at certain conditions. The simulations also show that the equilibrium plate separation (where the pressure changes from attractive to repulsive) exhibits a novel unbinding transition. We compare the Monte Carlo results with the strong-coupling theory, which is shown to describe well the bound states of systems with moderate and high couplings. The regime where the two walls are very close to each other is also shown to be well described by the SC theory. Finally, Using a field-theoretic approach, we derive the exact low-density ("virial") expansion of a binary mixture of positively and negatively charged hard spheres (two-component hard-core plasma, TCPHC). The free energy obtained is valid for systems where the diameters d_+ and d_- and the charge valences q_+ and q_- of positive and negative ions are unconstrained, i.e., the same expression can be used to treat dilute salt solutions (where typically d_+ ~ d_- and q_+ ~ q_-) as well as colloidal suspensions (where the difference in size and valence between macroions and counterions can be very large). We also discuss some applications of our results.