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Shprits, Yuri ; Drozdov, Alexander ; Spasojevic, Maria ; Kellerman, Adam C. ; Usanova, Maria E. ; Engebretson, Mark J. ; Agapitov, Oleksiy V. ; Zhelavskaya, Irina ; Raita, Tero J. ; Spence, Harlan E. ; Baker, Daniel N. ; Zhu, Hui ; Aseev, Nikita
Aseev, Nikita ; Shprits, Yuri ; Wang, Dedong ; Wygant, John ; Drozdov, Alexander ; Kellerman, Adam C. ; Reeves, Geoffrey D.
Ring current electrons (1–100 keV) have received significant attention in recent decades, but many questions regarding their major transport and loss mechanisms remain open. In this study, we use the four‐dimensional Versatile Electron Radiation Belt code to model the enhancement of phase space density that occurred during the 17 March 2013 storm. Our model includes global convection, radial diffusion, and scattering into the Earth's atmosphere driven by whistler‐mode hiss and chorus waves. We study the sensitivity of the model to the boundary conditions, global electric field, the electric field associated with subauroral polarization streams, electron loss rates, and radial diffusion coefficients. The results of the code are almost insensitive to the model parameters above 4.5 RERE, which indicates that the general dynamics of the electrons between 4.5 RE and the geostationary orbit can be explained by global convection. We found that the major discrepancies between the model and data can stem from the inaccurate electric field model and uncertainties in lifetimes. We show that additional mechanisms that are responsible for radial transport are required to explain the dynamics of ≥40‐keV electrons, and the inclusion of the radial diffusion rates that are typically assumed in radiation belt studies leads to a better agreement with the data. The overall effect of subauroral polarization streams on the electron phase space density profiles seems to be smaller than the uncertainties in other input parameters. This study is an initial step toward understanding the dynamics of these particles inside the geostationary orbit.
Smirnov, Artem G. ; Kronberg, Elena A. ; Latallerie, F. ; Daly, Patrick W. ; Aseev, Nikita ; Shprits, Yuri ; Kellerman, Adam C. ; Kasahara, Satoshi ; Turner, Drew L. ; Taylor, M. G. G. T.
Plain Language Summary Radiation belts of the Earth, which are the zones of charged energetic particles trapped by the geomagnetic field, comprise enormous and dynamic systems. While the inner radiation belt, composed mainly of high-energy protons, is relatively stable, the outer belt, filled with energetic electrons, is highly variable and depends substantially on solar activity. Hence, extended reliable observations and the improved models of the electron intensities in the outer belt depending on solar wind parameters are necessary for prediction of their dynamics. The Cluster mission has been measuring electron flux intensities in the radiation belts since its launch in 2000, thus providing a huge dataset that can be used for radiation belts analysis. Using 16 years of electron measurements by the Cluster mission corrected for background contamination, we derived a uniform linear-logarithmic dependence of electron fluxes in the outer belt on the solar wind dynamic pressure.
Smirnov, Artem G. ; Kronberg, Elena A. ; Daly, Patrick W. ; Aseev, Nikita ; Shprits, Yuri ; Kellerman, Adam C.
The Cluster mission has produced a large data set of electron flux measurements in the Earth's magnetosphere since its launch in late 2000. Electron fluxes are measured using Research with Adaptive Particle Imaging Detector (RAPID)/Imaging Electron Spectrometer (IES) detector as a function of energy, pitch angle, spacecraft position, and time. However, no adiabatic invariants have been calculated for Cluster so far. In this paper we present a step-by-step guide to calculations of adiabatic invariants and conversion of the electron flux to phase space density (PSD) in these coordinates. The electron flux is measured in two RAPID/IES energy channels providing pitch angle distribution at energies 39.2-50.5 and 68.1-94.5 keV in nominal mode since 2004. A fitting method allows to expand the conversion of the differential fluxes to the range from 40 to 150 keV. Best data coverage for phase space density in adiabatic invariant coordinates can be obtained for values of second adiabatic invariant, K, similar to 10(2), and values of the first adiabatic invariant mu in the range approximate to 5-20 MeV/G. Furthermore, we describe the production of a new data product "LSTAR," equivalent to the third adiabatic invariant, available through the Cluster Science Archive for years 2001-2018 with 1-min resolution. The produced data set adds to the availability of observations in Earth's radiation belts region and can be used for long-term statistical purposes.
Shprits, Yuri ; Menietti, J. D. ; Drozdov, Alexander ; Horne, Richard B. ; Woodfield, Emma E. ; Groene, J. B. ; de Soria-Santacruz, M. ; Averkamp, T. F. ; Garrett, H. ; Paranicas, C. ; Gurnett, Don A.
Understanding of wave environments is critical for the understanding of how particles are accelerated and lost in space. This study shows that in the vicinity of Europa and Ganymede, that respectively have induced and internal magnetic fields, chorus wave power is significantly increased. The observed enhancements are persistent and exceed median values of wave activity by up to 6 orders of magnitude for Ganymede. Produced waves may have a pronounced effect on the acceleration and loss of particles in the Jovian magnetosphere and other astrophysical objects. The generated waves are capable of significantly modifying the energetic particle environment, accelerating particles to very high energies, or producing depletions in phase space density. Observations of Jupiter’s magnetosphere provide a unique opportunity to observe how objects with an internal magnetic field can interact with particles trapped in magnetic fields of larger scale objects.
Shprits, Yuri ; Zhelavskaya, Irina ; Green, Janet C. ; Pulkkinen, Antti A. ; Horne, Richard B. ; Pitchford, David ; Glover, Alexi
Participants of the 2017 European Space Weather Week in Ostend, Belgium, discussed the stakeholder requirements for space weather-related models. It was emphasized that stakeholders show an increased interest in space weather-related models. Participants of the meeting discussed particular prediction indicators that can provide first-order estimates of the impact of space weather on engineering systems.
In an effort to explain the formation of a narrow third radiation belt at ultra-relativistic energies detected during a solar storm in September 20121, Mann et al.2 present simulations from which they conclude it arises from a process of outward radial diffusion alone, without the need for additional loss processes from higher frequency waves. The comparison of observations with the model in Figs 2 and 3 of their Article clearly shows that even with strong radial diffusion rates, the model predicts a third belt near L* = 3 that is twice as wide as observed and approximately an order of magnitude more intense. We therefore disagree with their interpretation that “the agreement between the absolute fluxes from the model and those observed by REPT [the Relativistic Electron Proton Telescope] shown on Figs 2 and 3 is excellent.”
Previous studies3 have shown that outward radial diffusion plays a very important role in the dynamics of the outer belt and is capable of explaining rapid reductions in the electron flux. It has also been shown that it can produce remnant belts (Fig. 2 of a long-term simulation study4). However, radial diffusion alone cannot explain the formation of the narrow third belt at multi-MeV during September 2012. An additional loss mechanism is required.
Higher radial diffusion rates cannot improve the comparison of model presented by Mann et al. with observations. A further increase in the radial diffusion rates (reported in Fig. 4 of the Supplementary Information of ref. 2) results in the overestimation of the outer belt fluxes by up to three orders of magnitude at energy of 3.4 MeV.
Observations at 2 MeV, where belts show only a two-zone structure, were not presented by Mann et al. Moreover, simulations of electrons with energies below 2 MeV with the same diffusion rates and boundary conditions used by the authors would probably produce very strong depletions down to L = 3–3.5, where L is radial distance from the centre of the Earth to the given field line in the equatorial plane. Observations do not show a non-adiabatic loss below L ∼ 4.5 for 2 MeV. Such different dynamics between 2 MeV and above 4 MeV at around L = 3.5 are another indication that particles are scattered by electromagnetic ion cyclotron (EMIC) waves that affect only energies above a certain threshold.
Observations of the phase space density (PSD) provide additional evidence for the local loss of electrons. Around L* = 3.5–4 PSD shows significant decrease by an order of magnitude starting in the afternoon of 3 September (Fig. 1a), while PSD above L* = 4 is increasing. The minimum in PSD between L* = 3.5–4 continues to decrease until 4 September. This evolution demonstrates that the loss is not produced by outward diffusion. Radial diffusion cannot produce deepening minima, as it works to smooth gradients. Just as growing peaks in PSD show the presence of localized acceleration5, deepening minima show the presence of localized loss.
Figure 1: Time evolution of radiation profiles in electron PSD at relativistic and ultra-relativistic energies.
figure 1
a, Similar to Supplementary Fig. 3 of ref. 2, but using TS07D model10 and for μ = 2,500 MeV G−1, K = 0.05 RE G0.5 (where RE is the radius of the Earth). b, Similar to Supplementary Fig. 3 of ref. 2, but using TS07D model and for μ = 700 MeV G−1, corresponding to MeV energies in the heart of the belt. Minimum in PSD in the heart of the multi-MeV electron radiation belt between 3.5 and 4 RE deepening between the afternoon of 3 September and 5 September clearly show that the narrow remnant belt at multi-MeV below 3.5 RE is produced by the local loss.
Full size image
The minimum in the outer boundary is reached on the evening of 2 September. After that, the outer boundary moves up, while the minimum decreases by approximately an order of magnitude, clearly showing that this main decrease cannot be explained by outward diffusion, and requires additional loss processes. The analysis of profiles of PSD is a standard tool used, for example, in the study about electron acceleration5 and routinely used by the entire Van Allen Probes team. In the Supplementary Information, we show that this analysis is validated by using different magnetic field models. The Supplementary Information also shows that measurements are above background noise.
Deepening minima at multi-MeV during the times when the boundary flux increases are clearly seen in Fig. 1a. They show that there must be localized loss, as radial diffusion cannot produce a minimum that becomes lower with time. At lower energies of 1–2 MeV, which corresponds to lower values of the first adiabatic invariant μ (Fig. 1b), the profiles are monotonic between L* = 3–3.5, consistent with the absence of scattering by EMIC waves that affect only electrons above a certain energy threshold6,7,8,9.
In summary, the results of the modelling and observations presented by Mann et al. do not lend support to the claim of explaining the dynamics of the ultra-relativistic third Van Allen radiation belt in terms of an outward radial diffusion process alone. While the outward radial diffusion driven by the loss to the magnetopause2 is certainly operating during this storm, there is compelling observational and modelling2,6 evidence that shows that very efficient localized electron loss operates during this storm at multi-MeV energies, consistent with localized loss produced by EMIC waves.
Sadovnichii, V. A. ; Panasyuk, M. I. ; Amelyushkin, A. M. ; Benghin, V. V. ; Garipov, G. K. ; Kalegaev, V. V. ; Klimov, P. A. ; Khrenov, B. A. ; Petrov, V. L. ; Sharakin, S. A. ; Shirokov, A. V. ; Svertilov, S. I. ; Zotov, M. Y. ; Yashin, I. V. ; Gorbovskoy, E. S. ; Lipunov, V. M. ; Park, I. H. ; Lee, J. ; Jeong, S. ; Kim, M. B. ; Jeong, H. M. ; Shprits, Yuri ; Angelopoulos, V. ; Russell, C. T. ; Runov, A. ; Turner, D. ; Strangeway, R. J. ; Caron, R. ; Biktemerova, S. ; Grinyuk, A. ; Lavrova, M. ; Tkachev, L. ; Tkachenko, A. ; Martinez, O. ; Salazar, H. ; Ponce, E.
The "Lomonosov" space project is lead by Lomonosov Moscow State University in collaboration with the following key partners: Joint Institute for Nuclear Research, Russia, University of California, Los Angeles (USA), University of Pueblo (Mexico), Sungkyunkwan University (Republic of Korea) and with Russian space industry organi-zations to study some of extreme phenomena in space related to astrophysics, astroparticle physics, space physics, and space biology. The primary goals of this experiment are to study:
-Ultra-high energy cosmic rays (UHECR) in the energy range of the Greizen-ZatsepinKuzmin (GZK) cutoff;
-Ultraviolet (UV) transient luminous events in the upper atmosphere;
-Multi-wavelength study of gamma-ray bursts in visible, UV, gamma, and X-rays;
-Energetic trapped and precipitated radiation (electrons and protons) at low-Earth orbit (LEO) in connection with global geomagnetic disturbances;
-Multicomponent radiation doses along the orbit of spacecraft under different geomagnetic conditions and testing of space segments of optical observations of space-debris and other space objects;
-Instrumental vestibular-sensor conflict of zero-gravity phenomena during space flight.
This paper is directed towards the general description of both scientific goals of the project and scientific equipment on board the satellite. The following papers of this issue are devoted to detailed descriptions of scientific instruments.
Drozdov, Alexander ; Shprits, Yuri ; Usanova, Maria E. ; Aseev, Nikita ; Kellerman, Adam C. ; Zhu, H.
Electromagnetic ion cyclotron (EMIC) waves play an important role in the dynamics of ultrarelativistic electron population in the radiation belts. However, as EMIC waves are very sporadic, developing a parameterization of such wave properties is a challenging task. Currently, there are no dynamic, activity-dependent models of EMIC waves that can be used in the long-term (several months) simulations, which makes the quantitative modeling of the radiation belt dynamics incomplete. In this study, we investigate Kp, Dst, and AE indices, solar wind speed, and dynamic pressure as possible parameters of EMIC wave presence. The EMIC waves are included in the long-term simulations (1year, including different geomagnetic activity) performed with the Versatile Electron Radiation Belt code, and we compare results of the simulation with the Van Allen Probes observations. The comparison shows that modeling with EMIC waves, parameterized by solar wind dynamic pressure, provides a better agreement with the observations among considered parameterizations. The simulation with EMIC waves improves the dynamics of ultrarelativistic fluxes and reproduces the formation of the local minimum in the phase space density profiles.
Aseev, Nikita ; Shprits, Yuri ; Drozdov, Alexander ; Kellerman, Adam C. ; Usanova, Maria E. ; Wang, D. ; Zhelavskaya, Irina
Up until recently, signatures of the ultrarelativistic electron loss driven by electromagnetic ion cyclotron (EMIC) waves in the Earth's outer radiation belt have been limited to direct or indirect measurements of electron precipitation or the narrowing of normalized pitch angle distributions in the heart of the belt. In this study, we demonstrate additional observational evidence of ultrarelativistic electron loss that can be driven by resonant interaction with EMIC waves. We analyzed the profiles derived from Van Allen Probe particle data as a function of time and three adiabatic invariants between 9 October and 29 November 2012. New local minimums in the profiles are accompanied by the narrowing of normalized pitch angle distributions and ground‐based detection of EMIC waves. Such a correlation may be indicative of ultrarelativistic electron precipitation into the Earth's atmosphere caused by resonance with EMIC waves.
Spectral lines formed in stellar winds from OB stars are observed to exhibit profile variations. Discrete Absorption Components (DACs) show a remarkably slow wavelength drift with time. In a straightforward interpretation, this is in sharp contradiction to the steep velocity law predicted by the radiation-driven wind theory, and by semi- empirical profile fitting. In the present paper we re-discuss the interpretation of the drift rate. We show that the Co- rotating Interaction Region (CIR) model for the formation of DACs does not explain their slow drift rate as a consequence of rotation. On the contrary, the apparent acceleration of a spectral CIR feature is even higher than for the corresponding kinematical model without rotation. However, the observations can be understood by distinguishing between the velocity field of the matter flow, and the velocity law for the motion of the patterns in which the DAC features are formed. If the latter propagate upstream against the matter flow, the resulting wavelength drift mimics a much slower acceleration although the matter is moving fast. Additional to the DACs, a second type of recurrent structures is present in observed OB star spectra, the so-called modulations. In contrast to the DACs, these structures show a steep acceleration compatible with the theoretically predicted velocity law. We see only two possible consistent scenarios. Either, the wind is accelerated fast, and the modulations are formed in advected structures, while the DACs come from structures which are propagating upstream. Or, alternatively, steep and shallow velocity laws may co-exist at the same time in different spatial regions or directions of the wind.
The carbon-rich WC5 star WR 114 was not detected during a 15.9 ksec XMM-Newton observation, implying an upper limit to the X-ray luminosity of Lx < 2.5 x 1030 ergs-1 and to the X-ray to bolometric luminosity ratio of Lx/Lbol < 4 x 10-9. This confirms indications from earlier less sensitive measurements that there has been no convincing X-ray detection of any single WC star. This lack of detections is reinforced by XMM-Newton and CHANDRA observations of WC stars. Thus the conclusion has to be drawn that the stars with radiatively-driven stellar winds of this particular class are insignificant X-ray sources. We attribute this to photoelectronic absorption by the stellar wind. The high opacity of the metal-rich and dense winds from WC stars puts the radius of optical depth unity at hundreds or thousands of stellar radii for much of the X-ray band. We believe that the essential absence of hot plasma so far out in the wind exacerbated by the large distances and correspondingly high ISM column densities makes the WC stars too faint to be detectable with current technology. The result also applies to many WC stars in binary systems, of which only about 20 % are identified X-ray sources, presumably due to colliding winds.
We present XMM-Newton results for the X-ray spectrum from the N-rich Wolf-Rayet (WR) star WR 1. The EPIC instrument was used to obtain a medium-resolution spectrum. The following features characterize this spectrum: (a) significant emission "bumps" appear that are coincident with the wavelengths of typical strong lines, such as Mg XI, Si XIII and S XV; (b) little emission is detected above 4 keV, in contrast to recent reports of a hard component in the stars WR 6 and WR 110 which are of similar subtype; and (c) evidence for sulfur K-edge absorption at about 2.6 keV, which could only arise from absorption of X-rays by the ambient stellar wind. The lack of hard emission in our dataset is suggestive that WR 1 may truly be a single star, thus representing the first detailed X-ray spectrum that isolates the WR wind alone (in contrast to colliding wind zones). Although the properties of the S-edge are not well-constrained by our data, it does appear to be real, and its detection indicates that at least some of the hot gas in WR 1 must reside interior to the radius of optical depth unity for the total absorptive opacity at the energy of the edge.
Brown, John C. ; Barrett, R. K. ; Oskinova, Lidia M. ; Owocki, S. P. ; Hamann, Wolf-Rainer ; de Jong, J. A. ; Kaper, L. ; Henrichs, H. F.
The information content of data on rotationally periodic recurrent discrete absorption components (DACs) in hot star wind emission lines is discussed. The data comprise optical depths tau(w,phi) as a function of dimensionless Doppler velocity w=(Deltalambda/lambda(0))(c/v(infinity)) and of time expressed in terms of stellar rotation angle phi. This is used to study the spatial distributions of density, radial and rotational velocities, and ionisation structures of the corotating wind streams to which recurrent DACs are conventionally attributed. The simplifying assumptions made to reduce the degrees of freedom in such structure distribution functions to match those in the DAC data are discussed and the problem then posed in terms of a bivariate relationship between tau(w, phi) and the radial velocity v(r)(r), transverse rotation rate Omega(r) and density rho(r, phi) structures of the streams. The discussion applies to cases where: the streams are equatorial; the system is seen edge on; the ionisation structure is approximated as uniform; the radial and transverse velocities are taken to be functions only of radial distance but the stream density is allowed to vary with azimuth. The last kinematic assumption essentially ignores the dynamical feedback of density on velocity and the relationship of this to fully dynamical models is discussed. The case of narrow streams is first considered, noting the result of Hamann et al. (2001) that the apparent acceleration of a narrow stream DAC is higher than the acceleration of the matter itself, so that the apparent slow acceleration of DACs cannot be attributed to the slowness of stellar rotation. Thus DACs either involve matter which accelerates slower than the general wind flow, or they are formed by structures which are not advected with the matter flow but propagate upstream (such as Abbott waves). It is then shown how, in the kinematic model approximation, the radial speed of the absorbing matter can be found by inversion of the apparent acceleration of the narrow DAC, for a given rotation law. The case of broad streams is more complex but also more informative. The observed tau(w,phi) is governed not only by v(r)(r) and Omega(r) of the absorbing stream matter but also by the density profile across the stream, determined by the azimuthal (phi(0)) distribution function F- 0(phi(0)) of mass loss rate around the stellar equator. When F-0(phi(0)) is fairly wide in phi(0), the acceleration of the DAC peak tau(w, phi) in w is generally slow compared with that of a narrow stream DAC and the information on v(r)(r), Omega(r) and F-0(phi(0)) is convoluted in the data tau(w, phi). We show that it is possible, in this kinematic model, to recover by inversion, complete information on all three distribution functions v(r)(r), Omega(r) and F- 0(phi(0)) from data on tau(w, phi) of sufficiently high precision and resolution since v(r)(r) and Omega(r) occur in combination rather than independently in the equations. This is demonstrated for simulated data, including noise effects, and is discussed in relation to real data and to fully hydrodynamic models
Oskinova, Lidia M. ; Sun, W. ; Evans, C. J. ; Henault-Brunet, V. ; Chu, Y.-H. ; Gallagher, J. S. ; Guerrero, Martín A. ; Gruendl, R. A. ; Güdel, M. ; Silich, S. ; Chen, Y. ; Naze, Y. ; Hainich, Rainer ; Reyes-Iturbide, J.
We report the discovery of extended X-ray emission within the young star cluster NGC 602a in the Wing of the Small Magellanic Cloud (SMC) based on observations obtained with the Chandra X-Ray Observatory. X-ray emission is detected from the cluster core area with the highest stellar density and from a dusty ridge surrounding the H II region. We use a census of massive stars in the cluster to demonstrate that a cluster wind or wind-blown bubble is unlikely to provide a significant contribution to the X-ray emission detected from the central area of the cluster. We therefore suggest that X-ray emission at the cluster core originates from an ensemble of low-and solar-mass pre-main-sequence (PMS) stars, each of which would be too weak in X-rays to be detected individually. We attribute the X-ray emission from the dusty ridge to the embedded tight cluster of the newborn stars known in this area from infrared studies. Assuming that the levels of X-ray activity in young stars in the low-metallicity environment of NGC 602a are comparable to their Galactic counterparts, then the detected spatial distribution, spectral properties, and level of X-ray emission are largely consistent with those expected from low-and solar-mass PMS stars and young stellar objects (YSOs). This is the first discovery of X-ray emission attributable to PMS stars and YSOs in the SMC, which suggests that the accretion and dynamo processes in young, low-mass objects in the SMC resemble those in the Galaxy.
Background:
Contamination detection is a important step that should be carefully considered in early stages when designing and performing microbiome studies to avoid biased outcomes. Detecting and removing true contaminants is challenging, especially in low-biomass samples or in studies lacking proper controls. Interactive visualizations and analysis platforms are crucial to better guide this step, to help to identify and detect noisy patterns that could potentially be contamination. Additionally, external evidence, like aggregation of several contamination detection methods and the use of common contaminants reported in the literature, could help to discover and mitigate contamination.
Results:
We propose GRIMER, a tool that performs automated analyses and generates a portable and interactive dashboard integrating annotation, taxonomy, and metadata. It unifies several sources of evidence to help detect contamination. GRIMER is independent of quantification methods and directly analyzes contingency tables to create an interactive and offline report. Reports can be created in seconds and are accessible for nonspecialists, providing an intuitive set of charts to explore data distribution among observations and samples and its connections with external sources. Further, we compiled and used an extensive list of possible external contaminant taxa and common contaminants with 210 genera and 627 species reported in 22 published articles.
Conclusion:
GRIMER enables visual data exploration and analysis, supporting contamination detection in microbiome studies. The tool and data presented are open source and available at https://gitlab.com/dacs-hpi/grimer.
Background: Dementia is a psychiatric condition the development of which is associated with numerous aspects of life. Our aim was to estimate dementia risk factors in German primary care patients.
Methods: The case-control study included primary care patients (70-90 years) with first diagnosis of dementia (all-cause) during the index period (01/2010-12/2014) (Disease Analyzer, Germany), and controls without dementia matched (1:1) to cases on the basis of age, sex, type of health insurance, and physician. Practice visit records were used to verify that there had been 10 years of continuous follow-up prior to the index date. Multivariate logistic regression models were fitted with dementia as a dependent variable and the potential predictors.
Results: The mean age for the 11,956 cases and the 11,956 controls was 80.4 (SD: 5.3) years. 39.0% of them were male and 1.9% had private health insurance. In the multivariate regression model, the following variables were linked to a significant extent with an increased risk of dementia: diabetes (OR: 1.17; 95% CI: 1.10-1.24), lipid metabolism (1.07; 1.00-1.14), stroke incl. TIA (1.68; 1.57-1.80), Parkinson's disease (PD) (1.89; 1.64-2.19), intracranial injury (1.30; 1.00-1.70), coronary heart disease (1.06; 1.00-1.13), mild cognitive impairment (MCI) (2.12; 1.82-2.48), mental and behavioral disorders due to alcohol use (1.96; 1.50-2.57). The use of statins (OR: 0.94; 0.90-0.99), proton-pump inhibitors (PPI) (0.93; 0.90-0.97), and antihypertensive drugs (0.96, 0.94-0.99) were associated with a decreased risk of developing dementia.
Conclusions: Risk factors for dementia found in this study are consistent with the literature. Nevertheless, the associations between statin, PPI and antihypertensive drug use, and decreased risk of dementia need further investigations.
Siberian larch forests and the ion content of thaw lakes form a geochemically functional entity
(2013)
Herzschuh, Ulrike ; Pestryakova, Luidmila Agafyevna ; Savelieva, Larissa A. ; Heinecke, Liv ; Böhmer, Thomas ; Biskaborn, Boris ; Andreev, Andrei ; Ramisch, Arne ; Shinneman, Avery L. C. ; Birks, H. John B.
Siberian larch forests growing on shallow permafrost soils have not, until now, been considered to be controlling the abiotic and biotic characteristics of the vast number of thaw-lake ecosystems. Here we show, using four independent data sets (a modern data set from 201 lakes from the tundra to taiga, and three lake-core records), that lake-water geochemistry in Yakutia is highly correlated with vegetation. Alkalinity increases with catchment forest density. We postulate that in this arid area, higher evapotranspiration in larch forests compared with that in the tundra vegetation leads to local salt accumulation in soils. Solutes are transported to nearby thaw lakes during rain events and snow melt, but are not fully transported into rivers, because there is no continuous groundwater flow within permafrost soils. This implies that potentially large shifts in the chemical characteristics of aquatic ecosystems to known warming are absent because of the slow response of catchment forests to climate change.
Mapping hydrological parameter distributions in high resolution is essential to understand and simulate groundwater flow and contaminant transport. Of particular interest is surface-based ground-penetrating radar (GPR) reflection imaging in electrically resistive sediments because of the expected close link between the subsurface water content and the dielectric permittivity, which controls GPR wave velocity and reflectivity. Conventional tools like common midpoint (CMP) velocity analysis provide physical parameter models of limited resolution only. We present a novel reflection amplitude inversion workflow for surface-based GPR data capable of resolving the subsurface dielectric permittivity and related water content distribution with markedly improved resolution. Our scheme is an adaptation of a seismic reflection impedance inversion scheme to surface-based GPR data. Key is relative-amplitude-preserving data preconditioning including GPR deconvolution, which results in traces with the source-wavelet distortions and propagation effects largely removed. The subsequent inversion for the underlying dielectric permittivity and water content structure is constrained by in situ dielectric permittivity data obtained by direct-push logging. After demonstrating the potential of our novel scheme on a realistic synthetic data set, we apply it to two 2-D 100 MHz GPR profiles acquired over a shallow sedimentary aquifer resulting in water content images of the shallow (3-7 m depth) saturated zone having decimeter resolution.
Enhancing the resolution and accuracy of surface ground-penetrating radar (GPR) reflection data by inverse filtering to recover a zero-phased band-limited reflectivity image requires a deconvolution technique that takes the mixed-phase character of the embedded wavelet into account. In contrast, standard stochastic deconvolution techniques assume that the wavelet is minimum phase and, hence, often meet with limited success when applied to GPR data. We present a new general-purpose blind deconvolution algorithm for mixed-phase wavelet estimation and deconvolution that (1) uses the parametrization of a mixed-phase wavelet as the convolution of the wavelet's minimum-phase equivalent with a dispersive all-pass filter, (2) includes prior information about the wavelet to be estimated in a Bayesian framework, and (3) relies on the assumption of a sparse reflectivity. Solving the normal equations using the data autocorrelation function provides an inverse filter that optimally removes the minimum-phase equivalent of the wavelet from the data, which leaves traces with a balanced amplitude spectrum but distorted phase. To compensate for the remaining phase errors, we invert in the frequency domain for an all-pass filter thereby taking advantage of the fact that the action of the all-pass filter is exclusively contained in its phase spectrum. A key element of our algorithm and a novelty in blind deconvolution is the inclusion of prior information that allows resolving ambiguities in polarity and timing that cannot be resolved using the sparseness measure alone. We employ a global inversion approach for non-linear optimization to find the all-pass filter phase values for each signal frequency. We tested the robustness and reliability of our algorithm on synthetic data with different wavelets, 1-D reflectivity models of different complexity, varying levels of added noise, and different types of prior information. When applied to realistic synthetic 2-D data and 2-D field data, we obtain images with increased temporal resolution compared to the results of standard processing.
Three-dimensional hydrostratigraphic models from ground-penetrating radar and direct-push data
(2011)
Three-dimensional models of hydraulic conductivity and porosity are essential to understand and simulate groundwater flow in heterogeneous geological environments. However, considering the inherent limitations of traditional hydrogeological field methods in terms of resolution, alternative field approaches are needed to establish such 3-D models with sufficient accuracy. In this study, we developed a workflow combining 3-D structural information extracted from ground penetrating radar (GPR) images with 1-D in situ physical-property estimates from direct-push (DP) logging to construct a 3-D hydrostratigraphic model. To illustrate this workflow, we collected an similar to 70 m x 90 m 100 MHz 3-D GPR data set over a shallow sedimentary aquifer system resolving six different GPR facies down to similar to 15 m depth. DP logs of the relative dielectric permittivity, the relative hydraulic conductivity, the cone resistance, the sleeve friction and the pore pressure provided crucial data (1) to establish a GPR velocity model for 3-D depth migration and to check the time-to-depth conversion of the GPR data, and (2) to construct a 3-D hydrostratigraphic model. This model was built by assigning porosity values, which were computed from the DP relative dielectric permittivity logs, and DP relative hydraulic conductivity estimates to the identified GPR facies. We conclude that the integration of 3-D GPR structural images and 1-D DP logs of target physical parameters provides an efficient way for detailed 3-D subsurface characterization as needed, for example, for groundwater flow simulations.
Zehe, E. ; Ehret, U. ; Pfister, L. ; Blume, Theresa ; Schroeder, Boris ; Westhoff, M. ; Jackisch, C. ; Schymanski, Stanislauv J. ; Weiler, M. ; Schulz, K. ; Allroggen, Niklas ; Tronicke, Jens ; van Schaik, Loes ; Dietrich, Peter ; Scherer, U. ; Eccard, Jana ; Wulfmeyer, Volker ; Kleidon, Axel
According to Dooge (1986) intermediate-scale catchments are systems of organized complexity, being too organized and yet too small to be characterized on a statistical/conceptual basis, but too large and too heterogeneous to be characterized in a deterministic manner. A key requirement for building structurally adequate models precisely for this intermediate scale is a better understanding of how different forms of spatial organization affect storage and release of water and energy. Here, we propose that a combination of the concept of hydrological response units (HRUs) and thermodynamics offers several helpful and partly novel perspectives for gaining this improved understanding. Our key idea is to define functional similarity based on similarity of the terrestrial controls of gradients and resistance terms controlling the land surface energy balance, rainfall runoff transformation, and groundwater storage and release. This might imply that functional similarity with respect to these specific forms of water release emerges at different scales, namely the small field scale, the hillslope, and the catchment scale. We thus propose three different types of "functional units" - specialized HRUs, so to speak - which behave similarly with respect to one specific form of water release and with a characteristic extent equal to one of those three scale levels. We furthermore discuss an experimental strategy based on exemplary learning and replicate experiments to identify and delineate these functional units, and as a promising strategy for characterizing the interplay and organization of water and energy fluxes across scales. We believe the thermodynamic perspective to be well suited to unmask equifinality as inherent in the equations governing water, momentum, and energy fluxes: this is because several combinations of gradients and resistance terms yield the same mass or energy flux and the terrestrial controls of gradients and resistance terms are largely independent. We propose that structurally adequate models at this scale should consequently disentangle driving gradients and resistance terms, because this optionally allow sequifinality to be partly reduced by including available observations, e. g., on driving gradients. Most importantly, the thermodynamic perspective yields an energy-centered perspective on rainfall-runoff transformation and evapotranspiration, including fundamental limits for energy fluxes associated with these processes. This might additionally reduce equifinality and opens up opportunities for testing thermodynamic optimality principles within independent predictions of rainfall-runoff or land surface energy exchange. This is pivotal to finding out whether or not spatial organization in catchments is in accordance with a fundamental organizing principle.
Multi-scale analysis of electrical conductivity of peatlands for the assessment of peat properties
(2015)
Peatlands store large amounts of carbon. This storage function has been reduced through intensive drainage, which leads to the decomposition of peat, resulting in a loss of carbon. Measurements of the real (sigma) and imaginary part (sigma) of electrical conductivity can deliver information on peat properties, such as the pore fluid conductivity (sigma(w)), cation exchange capacity (CEC), bulk density ((b)), water content (WC) and soil organic matter (SOM) content. These properties change with the peat's degree of decomposition (DD). To explore the relationships between the peat properties, sigma, sigma and DD, we focused on three different types of survey and scales. First, point measurements were made with a conductivity probe at various locations over a large area of northeast Germany to determine the degree of correlation between sigma and DD. Second, nine of these locations were selected for sampling to determine which of the properties sigma(w), CEC, (b), WC and SOM predominantly influence sigma and sigma. This multisite dataset includes the entire range of DD and was analysed in the laboratory. Third, one site was selected for a survey of sigma including sampling, to identify which properties mainly control sigma in a single-site approach. Statistical analysis revealed that for the multisite laboratory dataset, sigma(w) has the strongest effect on sigma, followed by CEC, whereas sigma is mainly determined by CEC. In a single-site approach, WC followed by CEC had a dominant effect on sigma. No clear correlation could be observed between (i) DD and peat properties and (ii) DD and sigma or sigma. This is because of the complex changes in properties with increasing DD.
Rud, R. ; Käthner, Jana ; Giesser, J. ; Pasche, R. ; Giebel, Antje ; Selbeck, Jörn ; Shenderey, C. ; Fleury, D. ; Zude, Manuela ; Alchanatis, Victor
Precision fruticulture addresses site or tree-adapted crop management. In the present study, soil and tree status, as well as fruit quality at harvest were analysed in a commercial apple (Malus × domestica 'Gala Brookfield'/Pajam1) orchard in a temperate climate. Trees were irrigated in addition to precipitation. Three irrigation levels (0, 50 and 100%) were applied. Measurements included readings of apparent electrical conductivity of soil (ECa), stem water potential, canopy temperature obtained by infrared camera, and canopy volume estimated by LiDAR and RGB colour imaging. Laboratory analyses of 6 trees per treatment were done on fruit considering the pigment contents and quality parameters. Midday stem water potential (SWP), normalized crop water stress index (CWSI) calculated from thermal data, and fruit yield and quality at harvest were analysed. Spatial patterns of the variability of tree water status were estimated by CWSI imaging supported by SWP readings. CWSI ranged from 0.1 to 0.7 indicating high variability due to irrigation and precipitation. Canopy volume data were less variable. Soil ECa appeared homogeneous in the range of 0 to 4 mS m-1. Fruit harvested in a drought stress zone showed enhanced portion of pheophytin in the chlorophyll pool. Irrigation affected soluble solids content and, hence, the quality of fruit. Overall, results highlighted that spatial variation in orchards can be found even if marginal variability of soil properties can be assumed.
Confronted with a new wave of criticism on the in effectiveness of its development programs, the World Bank embarked on a revitalization process, turning to private investors to finance International Development Association projects and widening its mandate. To explain these adaptation strategies of the World Bank to regain relevance, this piece draws on organizational ecology and orchestration scholarship. We contend that international organizations rely on two adaptation mechanisms, orchestration and scope expansion, when they lose their role as focal actors in an issue area. We find that the World Bank has indeed lost market share and has relied on these two mechanisms to revitalize itself. We show that the World Bank responded to changes in the environment by orchestrating a private sector-oriented capital increase, prioritizing private funding for development through a “cascade approach,” and expanding the scope of its mandate into adjacent domains of transnational governance, including climate change and global health.
Jiang, Wei ; Tao, Chen ; Stolterfoht, Martin ; Jin, Hui ; Stephen, Meera ; Lin, Qianqian ; Nagiri, Ravi C. R. ; Burn, Paul L. ; Gentle, Ian R.
Low donor content solar cells are an intriguing class of photovoltaic device about which there is still considerable discussion with respect to their mode of operation. We have synthesized a series of triphenylamine-based materials for use in low donor content devices with the electron accepting [6,6]-phenyl-C71-butyric acid methyl ester (PC(7)0BM). The triphenylamine-based materials absorb light in the near UV enabling the PC(7)0BM to be be the main light absorbing organic semiconducting material in the solar cell. It was found that the devices did not operate as classical Schottky junctions but rather photocurrent was generated by hole transfer from the photo-excited PC(7)0BM to the triphenylamine-based donors. We found that replacing the methoxy surface groups with methyl groups on the donor material led to a decrease in hole mobility for the neat films, which was due to the methyl substituted materials having the propensity to aggregate. The thermodynamic drive to aggregate was advantageous for the performance of the low donor content (6 wt%) films. It was found that the 6 wt% donor devices generally gave higher performance than devices containing 50 wt% of the donor.
Schulze, Patricia S. C. ; Bett, Alexander J. ; Bivour, Martin ; Caprioglio, Pietro ; Gerspacher, Fabian M. ; Kabaklı, Özde Ş. ; Richter, Armin ; Stolterfoht, Martin ; Zhang, Qinxin ; Neher, Dieter ; Hermle, Martin ; Hillebrecht, Harald ; Glunz, Stefan W. ; Goldschmidt, Jan Christoph
Monolithic perovskite silicon tandem solar cells can overcome the theoretical efficiency limit of silicon solar cells. This requires an optimum bandgap, high quantum efficiency, and high stability of the perovskite. Herein, a silicon heterojunction bottom cell is combined with a perovskite top cell, with an optimum bandgap of 1.68 eV in planar p-i-n tandem configuration. A methylammonium-free FA(0.75)Cs(0.25)Pb(I0.8Br0.2)(3) perovskite with high Cs content is investigated for improved stability. A 10% molarity increase to 1.1 m of the perovskite precursor solution results in approximate to 75 nm thicker absorber layers and 0.7 mA cm(-2) higher short-circuit current density. With the optimized absorber, tandem devices reach a high fill factor of 80% and up to 25.1% certified efficiency. The unencapsulated tandem device shows an efficiency improvement of 2.3% (absolute) over 5 months, showing the robustness of the absorber against degradation. Moreover, a photoluminescence quantum yield analysis reveals that with adapted charge transport materials and surface passivation, along with improved antireflection measures, the high bandgap perovskite absorber has the potential for 30% tandem efficiency in the near future.
Schulze, Patricia S. C. ; Bett, Alexander J. ; Bivour, Martin ; Caprioglio, Pietro ; Gerspacher, Fabian M. ; Kabaklı, Özde Ş. ; Richter, Armin ; Stolterfoht, Martin ; Zhang, Qinxin ; Neher, Dieter ; Hermle, Martin ; Hillebrecht, Harald ; Glunz, Stefan W. ; Goldschmidt, Jan Christoph
Monolithic perovskite silicon tandem solar cells can overcome the theoretical efficiency limit of silicon solar cells. This requires an optimum bandgap, high quantum efficiency, and high stability of the perovskite. Herein, a silicon heterojunction bottom cell is combined with a perovskite top cell, with an optimum bandgap of 1.68 eV in planar p-i-n tandem configuration. A methylammonium-free FA(0.75)Cs(0.25)Pb(I0.8Br0.2)(3) perovskite with high Cs content is investigated for improved stability. A 10% molarity increase to 1.1 m of the perovskite precursor solution results in approximate to 75 nm thicker absorber layers and 0.7 mA cm(-2) higher short-circuit current density. With the optimized absorber, tandem devices reach a high fill factor of 80% and up to 25.1% certified efficiency. The unencapsulated tandem device shows an efficiency improvement of 2.3% (absolute) over 5 months, showing the robustness of the absorber against degradation. Moreover, a photoluminescence quantum yield analysis reveals that with adapted charge transport materials and surface passivation, along with improved antireflection measures, the high bandgap perovskite absorber has the potential for 30% tandem efficiency in the near future.
Consequences of twenty-first-century policy for multi-millennial climate
and sea-level change
(2016)
Clark, Peter U. ; Shakun, Jeremy D. ; Marcott, Shaun A. ; Mix, Alan C. ; Eby, Michael ; Kulp, Scott ; Levermann, Anders ; Milne, Glenn A. ; Pfister, Patrik L. ; Santer, Benjamin D. ; Schrag, Daniel P. ; Solomon, Susan ; Stocker, Thomas F. ; Strauss, Benjamin H. ; Weaver, Andrew J. ; Winkelmann, Ricarda ; Archer, David ; Bard, Edouard ; Goldner, Aaron ; Lambeck, Kurt ; Pierrehumbert, Raymond T. ; Plattner, Gian-Kasper
Most of the policy debate surrounding the actions needed to mitigate and adapt to anthropogenic climate change has been framed by observations of the past 150 years as well as climate and sea-level projections for the twenty-first century. The focus on this 250-year window, however, obscures some of the most profound problems associated with climate change. Here, we argue that the twentieth and twenty-first centuries, a period during which the overwhelming majority of human-caused carbon emissions are likely to occur, need to be placed into a long-term context that includes the past 20 millennia, when the last Ice Age ended and human civilization developed, and the next ten millennia, over which time the projected impacts of anthropogenic climate change will grow and persist. This long-term perspective illustrates that policy decisions made in the next few years to decades will have profound impacts on global climate, ecosystems and human societies - not just for this century, but for the next ten millennia and beyond.
Winkelmann, Ricarda ; Martin, Maria A. ; Haseloff, Monika ; Albrecht, Torsten ; Bueler, Ed ; Khroulev, C. ; Levermann, Anders
We present the Potsdam Parallel Ice Sheet Model (PISM-PIK), developed at the Potsdam Institute for Climate Impact Research to be used for simulations of large-scale ice sheet-shelf systems. It is derived from the Parallel Ice Sheet Model (Bueler and Brown, 2009). Velocities are calculated by superposition of two shallow stress balance approximations within the entire ice covered region: the shallow ice approximation (SIA) is dominant in grounded regions and accounts for shear deformation parallel to the geoid. The plug-flow type shallow shelf approximation (SSA) dominates the velocity field in ice shelf regions and serves as a basal sliding velocity in grounded regions. Ice streams can be identified diagnostically as regions with a significant contribution of membrane stresses to the local momentum balance. All lateral boundaries in PISM-PIK are free to evolve, including the grounding line and ice fronts. Ice shelf margins in particular are modeled using Neumann boundary conditions for the SSA equations, reflecting a hydrostatic stress imbalance along the vertical calving face. The ice front position is modeled using a subgrid-scale representation of calving front motion (Albrecht et al., 2011) and a physically-motivated calving law based on horizontal spreading rates. The model is tested in experiments from the Marine Ice Sheet Model Intercomparison Project (MISMIP). A dynamic equilibrium simulation of Antarctica under present-day conditions is presented in Martin et al. (2011).
Martin, Maria A. ; Winkelmann, Ricarda ; Haseloff, M. ; Albrecht, Tanja ; Bueler, Ed ; Khroulev, C. ; Levermann, Anders
We present a dynamic equilibrium simulation of the ice sheet-shelf system on Antarctica with the Potsdam Parallel Ice Sheet Model (PISM-PIK). The simulation is initialized with present-day conditions for bed topography and ice thickness and then run to steady state with constant present-day surface mass balance. Surface temperature and sub-shelf basal melt distribution are parameterized. Grounding lines and calving fronts are free to evolve, and their modeled equilibrium state is compared to observational data. A physically-motivated calving law based on horizontal spreading rates allows for realistic calving fronts for various types of shelves. Steady-state dynamics including surface velocity and ice flux are analyzed for whole Antarctica and the Ronne-Filchner and Ross ice shelf areas in particular. The results show that the different flow regimes in sheet and shelves, and the transition zone between them, are captured reasonably well, supporting the approach of superposition of SIA and SSA for the representation of fast motion of grounded ice. This approach also leads to a natural emergence of sliding-dominated flow in stream-like features in this new 3-D marine ice sheet model.
ISMIP6 Antarctica
(2020)
Seroussi, Helene ; Nowicki, Sophie ; Payne, Antony J. ; Goelzer, Heiko ; Lipscomb, William H. ; Abe-Ouchi, Ayako ; Agosta, Cecile ; Albrecht, Torsten ; Asay-Davis, Xylar ; Barthel, Alice ; Calov, Reinhard ; Cullather, Richard ; Dumas, Christophe ; Galton-Fenzi, Benjamin K. ; Gladstone, Rupert ; Golledge, Nicholas R. ; Gregory, Jonathan M. ; Greve, Ralf ; Hattermann, Tore ; Hoffman, Matthew J. ; Humbert, Angelika ; Huybrechts, Philippe ; Jourdain, Nicolas C. ; Kleiner, Thomas ; Larour, Eric ; Leguy, Gunter R. ; Lowry, Daniel P. ; Little, Chistopher M. ; Morlighem, Mathieu ; Pattyn, Frank ; Pelle, Tyler ; Price, Stephen F. ; Quiquet, Aurelien ; Reese, Ronja ; Schlegel, Nicole-Jeanne ; Shepherd, Andrew ; Simon, Erika ; Smith, Robin S. ; Straneo, Fiammetta ; Sun, Sainan ; Trusel, Luke D. ; Van Breedam, Jonas ; van de Wal, Roderik S. W. ; Winkelmann, Ricarda ; Zhao, Chen ; Zhang, Tong ; Zwinger, Thomas
Ice flow models of the Antarctic ice sheet are commonly used to simulate its future evolution in response to different climate scenarios and assess the mass loss that would contribute to future sea level rise. However, there is currently no consensus on estimates of the future mass balance of the ice sheet, primarily because of differences in the representation of physical processes, forcings employed and initial states of ice sheet models. This study presents results from ice flow model simulations from 13 international groups focusing on the evolution of the Antarctic ice sheet during the period 2015-2100 as part of the Ice Sheet Model Intercomparison for CMIP6 (ISMIP6). They are forced with outputs from a subset of models from the Coupled Model Intercomparison Project Phase 5 (CMIP5), representative of the spread in climate model results. Simulations of the Antarctic ice sheet contribution to sea level rise in response to increased warming during this period varies between 7:8 and 30.0 cm of sea level equivalent (SLE) under Representative Concentration Pathway (RCP) 8.5 scenario forcing. These numbers are relative to a control experiment with constant climate conditions and should therefore be added to the mass loss contribution under climate conditions similar to present-day conditions over the same period. The simulated evolution of the West Antarctic ice sheet varies widely among models, with an overall mass loss, up to 18.0 cm SLE, in response to changes in oceanic conditions. East Antarctica mass change varies between 6 :1 and 8.3 cm SLE in the simulations, with a significant increase in surface mass balance outweighing the increased ice discharge under most RCP 8.5 scenario forcings. The inclusion of ice shelf collapse, here assumed to be caused by large amounts of liquid water ponding at the surface of ice shelves, yields an additional simulated mass loss of 28mm compared to simulations without ice shelf collapse. The largest sources of uncertainty come from the climate forcing, the ocean-induced melt rates, the calibration of these melt rates based on oceanic conditions taken outside of ice shelf cavities and the ice sheet dynamic response to these oceanic changes. Results under RCP 2.6 scenario based on two CMIP5 climate models show an additional mass loss of 0 and 3 cm of SLE on average compared to simulations done under present-day conditions for the two CMIP5 forcings used and display limited mass gain in East Antarctica.
Durand, Gael ; van den Broeke, Michiel R. ; Le Cozannet, Goneri ; Edwards, Tamsin L. ; Holland, Paul R. ; Jourdain, Nicolas C. ; Marzeion, Ben ; Mottram, Ruth ; Nicholls, Robert J. ; Pattyn, Frank ; Paul, Frank ; Slangen, Aimee B. A. ; Winkelmann, Ricarda ; Burgard, Clara ; van Calcar, Caroline J. ; Barre, Jean-Baptiste ; Bataille, Amelie ; Chapuis, Anne
Coastal areas are highly diverse, ecologically rich, regions of key socio-economic activity, and are particularly sensitive to sea-level change. Over most of the 20th century, global mean sea level has risen mainly due to warming and subsequent expansion of the upper ocean layers as well as the melting of glaciers and ice caps. Over the last three decades, increased mass loss of the Greenland and Antarctic ice sheets has also started to contribute significantly to contemporary sea-level rise. The future mass loss of the two ice sheets, which combined represent a sea-level rise potential of similar to 65 m, constitutes the main source of uncertainty in long-term (centennial to millennial) sea-level rise projections. Improved knowledge of the magnitude and rate of future sea-level change is therefore of utmost importance. Moreover, sea level does not change uniformly across the globe and can differ greatly at both regional and local scales. The most appropriate and feasible sea level mitigation and adaptation measures in coastal regions strongly depend on local land use and associated risk aversion. Here, we advocate that addressing the problem of future sea-level rise and its impacts requires (i) bringing together a transdisciplinary scientific community, from climate and cryospheric scientists to coastal impact specialists, and (ii) interacting closely and iteratively with users and local stakeholders to co-design and co-build coastal climate services, including addressing the high-end risks.
Gorski, Mathias ; Jung, Bettina ; Li, Yong ; Matias-Garcia, Pamela R. ; Wuttke, Matthias ; Coassin, Stefan ; Thio, Chris H. L. ; Kleber, Marcus E. ; Winkler, Thomas W. ; Wanner, Veronika ; Chai, Jin-Fang ; Chu, Audrey Y. ; Cocca, Massimiliano ; Feitosa, Mary F. ; Ghasemi, Sahar ; Hoppmann, Anselm ; Horn, Katrin ; Li, Man ; Nutile, Teresa ; Scholz, Markus ; Sieber, Karsten B. ; Teumer, Alexander ; Tin, Adrienne ; Wang, Judy ; Tayo, Bamidele O. ; Ahluwalia, Tarunveer S. ; Almgren, Peter ; Bakker, Stephan J. L. ; Banas, Bernhard ; Bansal, Nisha ; Biggs, Mary L. ; Boerwinkle, Eric ; Böttinger, Erwin ; Brenner, Hermann ; Carroll, Robert J. ; Chalmers, John ; Chee, Miao-Li ; Chee, Miao-Ling ; Cheng, Ching-Yu ; Coresh, Josef ; de Borst, Martin H. ; Degenhardt, Frauke ; Eckardt, Kai-Uwe ; Endlich, Karlhans ; Franke, Andre ; Freitag-Wolf, Sandra ; Gampawar, Piyush ; Gansevoort, Ron T. ; Ghanbari, Mohsen ; Gieger, Christian ; Hamet, Pavel ; Ho, Kevin ; Hofer, Edith ; Holleczek, Bernd ; Foo, Valencia Hui Xian ; Hutri-Kahonen, Nina ; Hwang, Shih-Jen ; Ikram, M. Arfan ; Josyula, Navya Shilpa ; Kahonen, Mika ; Khor, Chiea-Chuen ; Koenig, Wolfgang ; Kramer, Holly ; Kraemer, Bernhard K. ; Kuehnel, Brigitte ; Lange, Leslie A. ; Lehtimaki, Terho ; Lieb, Wolfgang ; Loos, Ruth J. F. ; Lukas, Mary Ann ; Lyytikainen, Leo-Pekka ; Meisinger, Christa ; Meitinger, Thomas ; Melander, Olle ; Milaneschi, Yuri ; Mishra, Pashupati P. ; Mononen, Nina ; Mychaleckyj, Josyf C. ; Nadkarni, Girish N. ; Nauck, Matthias ; Nikus, Kjell ; Ning, Boting ; Nolte, Ilja M. ; O'Donoghue, Michelle L. ; Orho-Melander, Marju ; Pendergrass, Sarah A. ; Penninx, Brenda W. J. H. ; Preuss, Michael H. ; Psaty, Bruce M. ; Raffield, Laura M. ; Raitakari, Olli T. ; Rettig, Rainer ; Rheinberger, Myriam ; Rice, Kenneth M. ; Rosenkranz, Alexander R. ; Rossing, Peter ; Rotter, Jerome ; Sabanayagam, Charumathi ; Schmidt, Helena ; Schmidt, Reinhold ; Schoettker, Ben ; Schulz, Christina-Alexandra ; Sedaghat, Sanaz ; Shaffer, Christian M. ; Strauch, Konstantin ; Szymczak, Silke ; Taylor, Kent D. ; Tremblay, Johanne ; Chaker, Layal ; van der Harst, Pim ; van der Most, Peter J. ; Verweij, Niek ; Voelker, Uwe ; Waldenberger, Melanie ; Wallentin, Lars ; Waterworth, Dawn M. ; White, Harvey D. ; Wilson, James G. ; Wong, Tien-Yin ; Woodward, Mark ; Yang, Qiong ; Yasuda, Masayuki ; Yerges-Armstrong, Laura M. ; Zhang, Yan ; Snieder, Harold ; Wanner, Christoph ; Boger, Carsten A. ; Kottgen, Anna ; Kronenberg, Florian ; Pattaro, Cristian ; Heid, Iris M.
Rapid decline of glomerular filtration rate estimated from creatinine (eGFRcrea) is associated with severe clinical endpoints. In contrast to cross-sectionally assessed eGFRcrea, the genetic basis for rapid eGFRcrea decline is largely unknown. To help define this, we meta-analyzed 42 genome-wide association studies from the Chronic Kidney Diseases Genetics Consortium and United Kingdom Biobank to identify genetic loci for rapid eGFRcrea decline. Two definitions of eGFRcrea decline were used: 3 mL/min/1.73m(2)/year or more ("Rapid3"; encompassing 34,874 cases, 107,090 controls) and eGFRcrea decline 25% or more and eGFRcrea under 60 mL/min/1.73m(2) at follow-up among those with eGFRcrea 60 mL/min/1.73m(2) or more at baseline ("CKDi25"; encompassing 19,901 cases, 175,244 controls). Seven independent variants were identified across six loci for Rapid3 and/or CKDi25: consisting of five variants at four loci with genome-wide significance (near UMOD-PDILT (2), PRKAG2, WDR72, OR2S2) and two variants among 265 known eGFRcrea variants (near GATM, LARP4B). All these loci were novel for Rapid3 and/or CKDi25 and our bioinformatic follow-up prioritized variants and genes underneath these loci. The OR2S2 locus is novel for any eGFRcrea trait including interesting candidates. For the five genome-wide significant lead variants, we found supporting effects for annual change in blood urea nitrogen or cystatin-based eGFR, but not for GATM or (LARP4B). Individuals at high compared to those at low genetic risk (8-14 vs. 0-5 adverse alleles) had a 1.20-fold increased risk of acute kidney injury (95% confidence interval 1.08-1.33). Thus, our identified loci for rapid kidney function decline may help prioritize therapeutic targets and identify mechanisms and individuals at risk for sustained deterioration of kidney function.
Metabolic signatures of healthy lifestyle patterns and colorectal cancer risk in a European cohort
(2020)
Rothwell, Joseph A. ; Murphy, Neil ; Aleksandrova, Krasimira ; Schulze, Matthias Bernd ; Bešević, Jelena ; Kliemann, Nathalie ; Jenab, Mazda ; Ferrari, Pietro ; Achaintre, David ; Gicquiau, Audrey ; Vozar, Béatrice ; Scalbert, Augustin ; Huybrechts, Inge ; Freisling, Heinz ; Prehn, Cornelia ; Adamski, Jerzy ; Cross, Amanda J. ; Pala, Valeria Maria ; Boutron-Ruault, Marie-Christine ; Dahm, Christina C. ; Overvad, Kim ; Gram, Inger Torhild ; Sandanger, Torkjel M. ; Skeie, Guri ; Jakszyn, Paula ; Tsilidis, Kostas K. ; Hughes, David J. ; van Guelpen, Bethany ; Bodén, Stina ; Sánchez, Maria-José ; Schmidt, Julie A. ; Katzke, Verena ; Kühn, Tilman ; Colorado-Yohar, Sandra ; Tumino, Rosario ; Bueno-de-Mesquita, Bas ; Vineis, Paolo ; Masala, Giovanna ; Panico, Salvatore ; Eriksen, Anne Kirstine ; Tjønneland, Anne ; Aune, Dagfinn ; Weiderpass, Elisabete ; Severi, Gianluca ; Chajès, Véronique ; Gunter, Marc J.
BACKGROUND & AIMS: Colorectal cancer risk can be lowered by adherence to the World Cancer Research Fund/American Institute for Cancer Research (WCRF/AICR) guidelines. We derived metabolic signatures of adherence to these guidelines and tested their associations with colorectal cancer risk in the European Prospective Investigation into Cancer and Nutrition cohort.
METHODS: Scores reflecting adherence to the WCRF/AICR recommendations (scale, 1-5) were calculated from participant data on weight maintenance, physical activity, diet, and alcohol among a discovery set of 5738 cancer-free European Prospective Investigation into Cancer and Nutrition participants with metabolomics data. Partial least-squares regression was used to derive fatty acid and endogenous metabolite signatures of the WCRF/AICR score in this group. In an independent set of 1608 colorectal cancer cases and matched controls, odds ratios (ORs) and 95% CIs were calculated for colorectal cancer risk per unit increase in WCRF/AICR score and per the corresponding change in metabolic signatures using multivariable conditional logistic regression.
RESULTS: Higher WCRF/AICR scores were characterized by metabolic signatures of increased odd-chain fatty acids, serine, glycine, and specific phosphatidylcholines. Signatures were inversely associated more strongly with colorectal cancer risk (fatty acids: OR, 0.51 per unit increase; 95% CI, 0.29-0.90; endogenous metabolites: OR, 0.62 per unit change; 95% CI, 0.50-0.78) than the WCRF/AICR score (OR, 0.93 per unit change; 95% CI, 0.86-1.00) overall. Signature associations were stronger in male compared with female participants.
CONCLUSIONS: Metabolite profiles reflecting adherence to WCRF/AICR guidelines and additional lifestyle or biological risk factors were associated with colorectal cancer. Measuring a specific panel of metabolites representative of a healthy or unhealthy lifestyle may identify strata of the population at higher risk of colorectal cancer.
Huang, Wentao ; Dupont-Nivet, Guillaume ; Lippert, Peter C. ; van Hinsbergen, Douwe J. J. ; Dekkers, Mark J. ; Guo, Zhaojie ; Waldrip, Ross ; Li, Xiaochun ; Zhang, Xiaoran ; Liu, Dongdong ; Kapp, Paul
Paleomagnetic dating of the India-Asia collision hinges on determining the Paleogene latitude of the Lhasa terrane (southern Tibet). Reported latitudes range from 5 degrees N to 30 degrees N, however, leading to contrasting paleogeographic interpretations. Here we report new data from the Eocene Linzizong volcanic rocks in the Nanmulin Basin, which previously yielded data suggesting a low paleolatitude (similar to 10 degrees N). New zircon U-Pb dates indicate an age of similar to 52Ma. Negative fold tests, however, demonstrate that the isolated characteristic remanent magnetizations, with notably varying inclinations, are not primary. Rock magnetic analyses, end-member modeling of isothermal remanent magnetization acquisition curves, and petrographic observations are consistent with variable degrees of posttilting remagnetization due to low-temperature alteration of primary magmatic titanomagnetite and the formation of secondary pigmentary hematite that unblock simultaneously. Previously reported paleomagnetic data from the Nanmulin Basin implying low paleolatitude should thus not be used to estimate the time and latitude of the India-Asia collision. We show that the paleomagnetic inclinations vary linearly with the contribution of secondary hematite to saturation isothermal remanent magnetization. We tentatively propose a new method to recover a primary remanence with inclination of 38.1 degrees (35.7 degrees, 40.5 degrees) (95% significance) and a secondary remanence with inclination of 42.9 degrees (41.5 degrees,44.4 degrees) (95% significance). The paleolatitude defined by the modeled primary remanence21 degrees N (19.8 degrees N, 23.1 degrees N)is consistent with the regional compilation of published results from pristine volcanic rocks and sedimentary rocks of the upper Linzizong Group corrected for inclination shallowing. The start of the Tibetan Himalaya-Asia collision was situated at similar to 20 degrees N and took place by similar to 50Ma.
Huang, Wentao ; van Hinsbergen, Douwe J. J. ; Lippert, Peter C. ; Guo, Zhaojie ; Dupont-Nivet, Guillaume
Several solutions have been proposed to explain the long-standing kinematic observation that postcollisional upper crustal shortening within the Himalaya and Asia is much less than the magnitude of India-Asia convergence. Here we implement these hypotheses in global plate reconstructions and test paleolatitudes predicted by the global apparent polar wander path against independent, and the most robust paleomagnetic data. Our tests demonstrate that (1) reconstructed 600-750km postcollisional intra-Asian shortening is a minimum value; (2) a 52Ma collision age is only consistent with paleomagnetic data if intra-Asian shortening was 900km; a 56-58Ma collision age requires greater intra-Asian shortening; (3) collision ages of 34 or 65Ma incorrectly predict Late Cretaceous and Paleogene paleolatitudes of the Tibetan Himalaya (TH); and (4) Cretaceous counterclockwise rotation of India cannot explain the paleolatitudinal divergence between the TH and India. All hypotheses, regardless of collision age, require major Cretaceous extension within Greater India.
Barbolini, Natasha ; Woutersen, Amber ; Dupont-Nivet, Guillaume ; Silvestro, Daniele ; Tardif-Becquet, Delphine ; Coster, Pauline M. C. ; Meijer, Niels ; Chang, Cun ; Zhang, Hou-Xi ; Licht, Alexis ; Rydin, Catarina ; Koutsodendris, Andreas ; Han, Fang ; Rohrmann, Alexander ; Liu, Xiang-Jun ; Zhang, Y. ; Donnadieu, Yannick ; Fluteau, Frederic ; Ladant, Jean-Baptiste ; Le Hir, Guillaume ; Hoorn, M. Carina
The origins and development of the arid and highly seasonal steppe-desert biome in Central Asia, the largest of its kind in the world, remain largely unconstrained by existing records. It is unclear how Cenozoic climatic, geological, and biological forces, acting at diverse spatial and temporal scales, shaped Central Asian ecosystems through time. Our synthesis shows that the Central Asian steppe-desert has existed since at least Eocene times but experienced no less than two regime shifts, one at the Eocene-Oligocene Transition and one in the mid-Miocene. These shifts separated three successive "stable states," each characterized by unique floral and faunal structures. Past responses to disturbance in the Asian steppe-desert imply that modern ecosystems are unlikely to recover their present structures and diversity if forced into a new regime. This is of concern for Asian steppes today, which are being modified for human use and lost to desertification at unprecedented rates.
Huang, Wentao ; Dupont-Nivet, Guillaume ; Lippert, Peter C. ; van Hinsbergen, Douwe J. J. ; Dekkers, Mark J. ; Waldrip, Ross ; Ganerod, Morgan ; Li, Xiaochun ; Guo, Zhaojie ; Kapp, Paul
The Paleogene latitude of the Lhasa terrane (southern Tibet) can constrain the age of the onset of the India-Asia collision. Estimates for this latitude, however, vary from 5 degrees N to 30 degrees N, and thus, here, we reassess the geochronology and paleomagnetism of Paleogene volcanic rocks from the Linzizong Group in the Linzhou basin. The lower and upper parts of the section previously yielded particularly conflicting ages and paleolatitudes. We report consistent Ar-40/Ar-39 and U-Pb zircon dates of similar to 52Ma for the upper Linzizong, and Ar-40/Ar-39 dates (similar to 51Ma) from the lower Linzizong are significantly younger than U-Pb zircon dates (64-63Ma), suggesting that the lower Linzizong was thermally and/or chemically reset. Paleomagnetic results from 24 sites in lower Linzizong confirm a low apparent paleolatitude of similar to 5 degrees N, compared to the upper part (similar to 20 degrees N) and to underlying Cretaceous strata (similar to 20 degrees N). Detailed rock magnetic analyses, end-member modeling of magnetic components, and petrography from the lower and upper Linzizong indicate widespread secondary hematite in the lower Linzizong, whereas hematite is rare in upper Linzizong. Volcanic rocks of the lower Linzizong have been hydrothermally chemically remagnetized, whereas the upper Linzizong retains a primary remanence. We suggest that remagnetization was induced by acquisition of chemical and thermoviscous remanent magnetizations such that the shallow inclinations are an artifact of a tilt correction applied to a secondary remanence in lower Linzizong. We estimate that the Paleogene latitude of Lhasa terrane was 204 degrees N, consistent with previous results suggesting that India-Asia collision likely took place by similar to 52Ma at similar to 20 degrees N.
Huang, Wentao ; van Hinsbergen, Douwe J. J. ; Dekkers, Mark J. ; Garzanti, Eduardo ; Dupont-Nivet, Guillaume ; Lippert, Peter C. ; Li, Xiaochun ; Maffione, Marco ; Langereis, Cor G. ; Hu, Xiumian ; Guo, Zhaojie ; Kapp, Paul
The Tibetan Himalaya represents the northernmost continental unit of the Indian plate that collided with Asia in the Cenozoic. Paleomagnetic studies on the Tibetan Himalaya can help constrain the dimension and paleogeography of "Greater India,' the Indian plate lithosphere that subducted and underthrusted below Asia after initial collision. Here we present a paleomagnetic investigation of a Jurassic (limestones) and Lower Cretaceous (volcaniclastic sandstones) section of the Tibetan Himalaya. The limestones yielded positive fold test, showing a prefolding origin of the isolated remanent magnetizations. Detailed paleomagnetic analyses, rock magnetic tests, end-member modeling of acquisition curves of isothermal remanent magnetization, and petrographic investigation reveal that the magnetic carrier of the Jurassic limestones is authigenic magnetite, whereas the dominant magnetic carrier of the Lower Cretaceous volcaniclastic sandstones is detrital magnetite. Our observations lead us to conclude that the Jurassic limestones record a prefolding remagnetization, whereas the Lower Cretaceous volcaniclastic sandstones retain a primary remanence. The volcaniclastic sandstones yield an Early Cretaceous paleolatitude of 55.5 degrees S [52.5 degrees S, 58.6 degrees S] for the Tibetan Himalaya, suggesting it was part of the Indian continent at that time. The size of "Greater India' during Jurassic time cannot be estimated from these limestones. Instead, a paleolatitude of the Tibetan Himalaya of 23.8 degrees S [21.8 degrees S, 26.1 degrees S] during the remagnetization process is suggested. It is likely that the remagnetization, caused by the oxidation of early diagenetic pyrite to magnetite, was induced during 103-83 or 77-67 Ma. The inferred paleolatitudes at these two time intervals imply very different tectonic consequences for the Tibetan Himalaya.
Bougeois, Laurie ; Dupont-Nivet, Guillaume ; de Rafelis, Marc ; Tindall, Julia C. ; Proust, Jean-Noel ; Reichart, Gert-Jan ; de Nooijer, Lennart J. ; Guo, Zhaojie ; Ormukov, Cholponbelk
Asian climate patterns, characterised by highly seasonal monsoons and continentality, are thought to originate in the Eocene epoch (56 to 34 million years ago - Ma) in response to global climate, Tibetan Plateau uplift and the disappearance of the giant Proto-Paratethys sea formerly extending over Eurasia. The influence of this sea on Asian climate has hitherto not been constrained by proxy records despite being recognised as a major driver by climate models. We report here strongly seasonal records preserved in annual lamina of Eocene oysters from the Proto-Paratethys with sedimentological and numerical data showing that monsoons were not dampened by the sea and that aridification was modulated by westerly moisture sourced from the sea. Hot and arid summers despite the presence of the sea suggest a strong anticyclonic zone at Central Asian latitudes and an orographic effect from the emerging Tibetan Plateau. Westerly moisture precipitating during cold and wetter winters appear to have decreased in two steps. First in response to the late Eocene (34-37 Ma) sea retreat; second by the orogeny of the Tian Shan and Pamir ranges shielding the westerlies after 25 Ma. Paleogene sea retreat and Neogene westerly shielding thus provide two successive mechanisms forcing coeval Asian desertification and biotic crises.
Page, M. ; Licht, Alexis ; Dupont-Nivet, Guillaume ; Meijer, Niels ; Barbolini, Natasha ; Hoorn, C. ; Schauer, A. ; Huntington, K. ; Bajnai, D. ; Fiebig, J. ; Mulch, Andreas ; Guo, Z.
The fall into the Oligocene icehouse is marked by a steady decline in global temperature with punctuated cooling at the Eocene-Oligocene transition, both of which are well documented in the marine realm. However, the chronology and mechanisms of cooling on land remain unclear. Here, we use clumped isotope thermometry on northeastern Tibetan continental carbonates to reconstruct a detailed Paleogene surface temperature record for the Asian continental interior, and correlate this to an enhanced pollen data set. Our results show two successive dramatic (>9 degrees C) temperature drops, at 37 Ma and at 33.5 Ma. These large-magnitude decreases in continental temperatures can only be explained by a combination of both regional cooling and shifts of the rainy season to cooler months, which we interpret to reflect a decline of monsoonal intensity. Our results suggest that the response of Asian surface temperatures and monsoonal rainfall to the steady decline of atmospheric CO2 and global temperature through the late Eocene was nonlinear and occurred in two steps separated by a period of climatic instability. Our results support the onset of the Antarctic Circumpolar Current coeval to the Oligocene isotope event 1 (Oi-1) glaciation at 33.5 Ma, reshaping the distribution of surface heat worldwide; however, the origin of the 37 Ma cooling event remains less clear.
Vaid, Akhil ; Somani, Sulaiman ; Russak, Adam J. ; De Freitas, Jessica K. ; Chaudhry, Fayzan F. ; Paranjpe, Ishan ; Johnson, Kipp W. ; Lee, Samuel J. ; Miotto, Riccardo ; Richter, Felix ; Zhao, Shan ; Beckmann, Noam D. ; Naik, Nidhi ; Kia, Arash ; Timsina, Prem ; Lala, Anuradha ; Paranjpe, Manish ; Golden, Eddye ; Danieletto, Matteo ; Singh, Manbir ; Meyer, Dara ; O'Reilly, Paul F. ; Huckins, Laura ; Kovatch, Patricia ; Finkelstein, Joseph ; Freeman, Robert M. ; Argulian, Edgar ; Kasarskis, Andrew ; Percha, Bethany ; Aberg, Judith A. ; Bagiella, Emilia ; Horowitz, Carol R. ; Murphy, Barbara ; Nestler, Eric J. ; Schadt, Eric E. ; Cho, Judy H. ; Cordon-Cardo, Carlos ; Fuster, Valentin ; Charney, Dennis S. ; Reich, David L. ; Böttinger, Erwin ; Levin, Matthew A. ; Narula, Jagat ; Fayad, Zahi A. ; Just, Allan C. ; Charney, Alexander W. ; Nadkarni, Girish N. ; Glicksberg, Benjamin S.
Background:
COVID-19 has infected millions of people worldwide and is responsible for several hundred thousand fatalities. The COVID-19 pandemic has necessitated thoughtful resource allocation and early identification of high-risk patients. However, effective methods to meet these needs are lacking.
Objective:
The aims of this study were to analyze the electronic health records (EHRs) of patients who tested positive for COVID-19 and were admitted to hospitals in the Mount Sinai Health System in New York City; to develop machine learning models for making predictions about the hospital course of the patients over clinically meaningful time horizons based on patient characteristics at admission; and to assess the performance of these models at multiple hospitals and time points.
Methods:
We used Extreme Gradient Boosting (XGBoost) and baseline comparator models to predict in-hospital mortality and critical events at time windows of 3, 5, 7, and 10 days from admission. Our study population included harmonized EHR data from five hospitals in New York City for 4098 COVID-19-positive patients admitted from March 15 to May 22, 2020. The models were first trained on patients from a single hospital (n=1514) before or on May 1, externally validated on patients from four other hospitals (n=2201) before or on May 1, and prospectively validated on all patients after May 1 (n=383). Finally, we established model interpretability to identify and rank variables that drive model predictions.
Results:
Upon cross-validation, the XGBoost classifier outperformed baseline models, with an area under the receiver operating characteristic curve (AUC-ROC) for mortality of 0.89 at 3 days, 0.85 at 5 and 7 days, and 0.84 at 10 days. XGBoost also performed well for critical event prediction, with an AUC-ROC of 0.80 at 3 days, 0.79 at 5 days, 0.80 at 7 days, and 0.81 at 10 days. In external validation, XGBoost achieved an AUC-ROC of 0.88 at 3 days, 0.86 at 5 days, 0.86 at 7 days, and 0.84 at 10 days for mortality prediction. Similarly, the unimputed XGBoost model achieved an AUC-ROC of 0.78 at 3 days, 0.79 at 5 days, 0.80 at 7 days, and 0.81 at 10 days. Trends in performance on prospective validation sets were similar. At 7 days, acute kidney injury on admission, elevated LDH, tachypnea, and hyperglycemia were the strongest drivers of critical event prediction, while higher age, anion gap, and C-reactive protein were the strongest drivers of mortality prediction.
Conclusions:
We externally and prospectively trained and validated machine learning models for mortality and critical events for patients with COVID-19 at different time horizons. These models identified at-risk patients and uncovered underlying relationships that predicted outcomes.
Gorski, Mathias ; Jung, Bettina ; Li, Yong ; Matias-Garcia, Pamela R. ; Wuttke, Matthias ; Coassin, Stefan ; Thio, Chris H. L. ; Kleber, Marcus E. ; Winkler, Thomas W. ; Wanner, Veronika ; Chai, Jin-Fang ; Chu, Audrey Y. ; Cocca, Massimiliano ; Feitosa, Mary F. ; Ghasemi, Sahar ; Hoppmann, Anselm ; Horn, Katrin ; Li, Man ; Nutile, Teresa ; Scholz, Markus ; Sieber, Karsten B. ; Teumer, Alexander ; Tin, Adrienne ; Wang, Judy ; Tayo, Bamidele O. ; Ahluwalia, Tarunveer S. ; Almgren, Peter ; Bakker, Stephan J. L. ; Banas, Bernhard ; Bansal, Nisha ; Biggs, Mary L. ; Boerwinkle, Eric ; Böttinger, Erwin ; Brenner, Hermann ; Carroll, Robert J. ; Chalmers, John ; Chee, Miao-Li ; Chee, Miao-Ling ; Cheng, Ching-Yu ; Coresh, Josef ; de Borst, Martin H. ; Degenhardt, Frauke ; Eckardt, Kai-Uwe ; Endlich, Karlhans ; Franke, Andre ; Freitag-Wolf, Sandra ; Gampawar, Piyush ; Gansevoort, Ron T. ; Ghanbari, Mohsen ; Gieger, Christian ; Hamet, Pavel ; Ho, Kevin ; Hofer, Edith ; Holleczek, Bernd ; Foo, Valencia Hui Xian ; Hutri-Kahonen, Nina ; Hwang, Shih-Jen ; Ikram, M. Arfan ; Josyula, Navya Shilpa ; Kahonen, Mika ; Khor, Chiea-Chuen ; Koenig, Wolfgang ; Kramer, Holly ; Kraemer, Bernhard K. ; Kuehnel, Brigitte ; Lange, Leslie A. ; Lehtimaki, Terho ; Lieb, Wolfgang ; Loos, Ruth J. F. ; Lukas, Mary Ann ; Lyytikainen, Leo-Pekka ; Meisinger, Christa ; Meitinger, Thomas ; Melander, Olle ; Milaneschi, Yuri ; Mishra, Pashupati P. ; Mononen, Nina ; Mychaleckyj, Josyf C. ; Nadkarni, Girish N. ; Nauck, Matthias ; Nikus, Kjell ; Ning, Boting ; Nolte, Ilja M. ; O'Donoghue, Michelle L. ; Orho-Melander, Marju ; Pendergrass, Sarah A. ; Penninx, Brenda W. J. H. ; Preuss, Michael H. ; Psaty, Bruce M. ; Raffield, Laura M. ; Raitakari, Olli T. ; Rettig, Rainer ; Rheinberger, Myriam ; Rice, Kenneth M. ; Rosenkranz, Alexander R. ; Rossing, Peter ; Rotter, Jerome ; Sabanayagam, Charumathi ; Schmidt, Helena ; Schmidt, Reinhold ; Schoettker, Ben ; Schulz, Christina-Alexandra ; Sedaghat, Sanaz ; Shaffer, Christian M. ; Strauch, Konstantin ; Szymczak, Silke ; Taylor, Kent D. ; Tremblay, Johanne ; Chaker, Layal ; van der Harst, Pim ; van der Most, Peter J. ; Verweij, Niek ; Voelker, Uwe ; Waldenberger, Melanie ; Wallentin, Lars ; Waterworth, Dawn M. ; White, Harvey D. ; Wilson, James G. ; Wong, Tien-Yin ; Woodward, Mark ; Yang, Qiong ; Yasuda, Masayuki ; Yerges-Armstrong, Laura M. ; Zhang, Yan ; Snieder, Harold ; Wanner, Christoph ; Boger, Carsten A. ; Kottgen, Anna ; Kronenberg, Florian ; Pattaro, Cristian ; Heid, Iris M.
Rapid decline of glomerular filtration rate estimated from creatinine (eGFRcrea) is associated with severe clinical endpoints. In contrast to cross-sectionally assessed eGFRcrea, the genetic basis for rapid eGFRcrea decline is largely unknown. To help define this, we meta-analyzed 42 genome-wide association studies from the Chronic Kidney Diseases Genetics Consortium and United Kingdom Biobank to identify genetic loci for rapid eGFRcrea decline. Two definitions of eGFRcrea decline were used: 3 mL/min/1.73m(2)/year or more ("Rapid3"; encompassing 34,874 cases, 107,090 controls) and eGFRcrea decline 25% or more and eGFRcrea under 60 mL/min/1.73m(2) at follow-up among those with eGFRcrea 60 mL/min/1.73m(2) or more at baseline ("CKDi25"; encompassing 19,901 cases, 175,244 controls). Seven independent variants were identified across six loci for Rapid3 and/or CKDi25: consisting of five variants at four loci with genome-wide significance (near UMOD-PDILT (2), PRKAG2, WDR72, OR2S2) and two variants among 265 known eGFRcrea variants (near GATM, LARP4B). All these loci were novel for Rapid3 and/or CKDi25 and our bioinformatic follow-up prioritized variants and genes underneath these loci. The OR2S2 locus is novel for any eGFRcrea trait including interesting candidates. For the five genome-wide significant lead variants, we found supporting effects for annual change in blood urea nitrogen or cystatin-based eGFR, but not for GATM or (LARP4B). Individuals at high compared to those at low genetic risk (8-14 vs. 0-5 adverse alleles) had a 1.20-fold increased risk of acute kidney injury (95% confidence interval 1.08-1.33). Thus, our identified loci for rapid kidney function decline may help prioritize therapeutic targets and identify mechanisms and individuals at risk for sustained deterioration of kidney function.
Balta Beylergil, Sinem ; Beck, Anne ; Deserno, Lorenz ; Lorenz, Robert C. ; Rapp, Michael A. ; Schlagenhauf, Florian ; Heinz, Andreas ; Obermayer, Klaus
Substance-dependent individuals often lack the ability to adjust decisions flexibly in response to the changes in reward contingencies. Prediction errors (PEs) are thought to mediate flexible decision-making by updating the reward values associated with available actions. In this study, we explored whether the neurobiological correlates of PEs are altered in alcohol dependence. Behavioral, and functional magnetic resonance imaging (fMRI) data were simultaneously acquired from 34 abstinent alcohol-dependent patients (ADP) and 26 healthy controls (HC) during a probabilistic reward-guided decision-making task with dynamically changing reinforcement contingencies. A hierarchical Bayesian inference method was used to fit and compare learning models with different assumptions about the amount of task-related information subjects may have inferred during the experiment. Here, we observed that the best-fitting model was a modified Rescorla-Wagner type model, the “double-update” model, which assumes that subjects infer the knowledge that reward contingencies are anti-correlated, and integrate both actual and hypothetical outcomes into their decisions. Moreover, comparison of the best-fitting model's parameters showed that ADP were less sensitive to punishments compared to HC. Hence, decisions of ADP after punishments were loosely coupled with the expected reward values assigned to them. A correlation analysis between the model-generated PEs and the fMRI data revealed a reduced association between these PEs and the BOLD activity in the dorsolateral prefrontal cortex (DLPFC) of ADP. A hemispheric asymmetry was observed in the DLPFC when positive and negative PE signals were analyzed separately. The right DLPFC activity in ADP showed a reduced correlation with positive PEs. On the other hand, ADP, particularly the patients with high dependence severity, recruited the left DLPFC to a lesser extent than HC for processing negative PE signals. These results suggest that the DLPFC, which has been linked to adaptive control of action selection, may play an important role in cognitive inflexibility observed in alcohol dependence when reinforcement contingencies change. Particularly, the left DLPFC may contribute to this impaired behavioral adaptation, possibly by impeding the extinction of the actions that no longer lead to a reward.
Deng, Zijun ; Wang, Weiwei ; Xua, Xun ; Gould, Oliver E. C. ; Kratz, Karl ; Ma, Nan ; Lendlein, Andreas
Stem cells are capable of sensing and processing environmental inputs, converting this information to output a specific cell lineage through signaling cascades. Despite the combinatorial nature of mechanical, thermal, and biochemical signals, these stimuli have typically been decoupled and applied independently, requiring continuous regulation by controlling units. We employ a programmable polymer actuator sheet to autonomously synchronize thermal and mechanical signals applied to mesenchymal stem cells (MSC5). Using a grid on its underside, the shape change of polymer sheet, as well as cell morphology, calcium (Ca2+) influx, and focal adhesion assembly, could be visualized and quantified. This paper gives compelling evidence that the temperature sensing and mechanosensing of MSC5 are interconnected via intracellular Ca2+. Up-regulated Ca2+ levels lead to a remarkable alteration of histone H3K9 acetylation and activation of osteogenic related genes. The interplay of physical, thermal, and biochemical signaling was utilized to accelerate the cell differentiation toward osteogenic lineage. The approach of programmable bioinstructivity provides a fundamental principle for functional biomaterials exhibiting multifaceted stimuli on differentiation programs. Technological impact is expected in the tissue engineering of periosteum for treating bone defects.
Licht, Alexis ; Coster, P. ; Ocakoglu, F. ; Campbell, C. ; Metais, G. ; Mulch, Andreas ; Taylor, M. ; Kappelman, John ; Beard, K. Christopher
Located along the Izmir-Ankara-Erzincan Suture (IAES), the Maastrichtian - Paleogene Orhaniye Basin has yielded a highly enigmatic-yet poorly dated- Paleogene mammal fauna, the endemic character of which has suggested high faunal provincialism associated with paleogeographic isolation of the Anatolian landmass during the early Cenozoic. Despite its biogeographic significance, the tectono-stratigraphic history of the Orhaniye Basin has been poorly documented; Here, we combine sedimentary, magnetostratigraphic, and geochronological data to infer the chronology and depositional history of the Orhaniye Basin. We then assess how our new data and interpretations for the Orhaniye Basin impact (1) the timing and mechanisms of seaway closure along the IAES and (2) the biogeographic evolution of Anatolia. Our results show that the Orhaniye Basin initially developed as a forearc basin during the Maastrichtian, before shifting to a retroarc foreland basin setting sometime between the early Paleocene and 44 Ma. This chronology supports a two-step scenario for the assemblage of the central Anatolian landmass, with incipient collision during the Paleocene - Early Eocene and final seaway retreat along the IAES during the earliest Late Eocene after the last marine incursion into the foreland basin. Our dating for the Orhaniye mammal fauna (44-43 Ma) indicates the persistence of faunal endemism in northern Anatolia until at least the late Lutetian despite the advanced stage of IAES closure. The tectonic evolution of dispersal corridors linking northern Anatolia with adjacent parts of Eurasia was not directly associated with IAES closure and consecutive uplifts, but rather with the build-up of continental bridges on the margins of Anatolia, in the Alpine and Tibetan-Himalayan orogens.
Braun, David R. ; Aldeias, Vera ; Archer, Will ; Arrowsmith, J. Ramon ; Baraki, Niguss ; Campisano, Christopher J. ; Deino, Alan L. ; DiMaggio, Erin N. ; Dupont-Nivet, Guillaume ; Engda, Blade ; Feary, David A. ; Garello, Dominique I. ; Kerfelew, Zenash ; McPherron, Shannon P. ; Patterson, David B. ; Reeves, Jonathan S. ; Thompson, Jessica C. ; Reed, Kaye E.
van Soest, Heleen L. ; Aleluia Reis, Lara ; Baptista, Luiz Bernardo ; Bertram, Christoph ; Després, Jacques ; Drouet, Laurent ; den Elzen, Michel ; Fragkos, Panagiotis ; Fricko, Oliver ; Fujimori, Shinichiro ; Grant, Neil ; Harmsen, Mathijs ; Iyer, Gokul ; Keramidas, Kimon ; Köberle, Alexandre C. ; Kriegler, Elmar ; Malik, Aman ; Mittal, Shivika ; Oshiro, Ken ; Riahi, Keywan ; Roelfsema, Mark ; van Ruijven, Bas ; Schaeffer, Roberto ; Silva Herran, Diego ; Tavoni, Massimo ; Ünlü, Gamze ; Vandyck, Toon ; van Vuuren, Detlef P.
Closing the emissions gap between Nationally Determined Contributions (NDCs) and the global emissions levels needed to achieve the Paris Agreement’s climate goals will require a comprehensive package of policy measures. National and sectoral policies can help fill the gap, but success stories in one country cannot be automatically replicated in other countries. They need to be adapted to the local context. Here, we develop a new Bridge scenario based on nationally relevant, short-term measures informed by interactions with country experts. These good practice policies are rolled out globally between now and 2030 and combined with carbon pricing thereafter. We implement this scenario with an ensemble of global integrated assessment models. We show that the Bridge scenario closes two-thirds of the emissions gap between NDC and 2 °C scenarios by 2030 and enables a pathway in line with the 2 °C goal when combined with the necessary long-term changes, i.e. more comprehensive pricing measures after 2030. The Bridge scenario leads to a scale-up of renewable energy (reaching 52%–88% of global electricity supply by 2050), electrification of end-uses, efficiency improvements in energy demand sectors, and enhanced afforestation and reforestation. Our analysis suggests that early action via good-practice policies is less costly than a delay in global climate cooperation.