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Regulation of respiration and fermentation to control the plant internal oxygen concentration
(2009)
Plant internal oxygen concentrations can drop well below ambient even when the plant grows under optimal conditions. Using pea (Pisum sativum) roots, we show how amenable respiration adapts to hypoxia to save oxygen when the oxygen availability decreases. The data cannot simply be explained by oxygen being limiting as substrate but indicate the existence of a regulatory mechanism, because the oxygen concentration at which the adaptive response is initiated is independent of the actual respiratory rate. Two phases can be discerned during the adaptive reaction: an initial linear decline of respiration is followed by a nonlinear inhibition in which the respiratory rate decreased progressively faster upon decreasing oxygen availability. In contrast to the cytochrome c pathway, the inhibition of the alternative oxidase pathway shows only the linear component of the adaptive response. Feeding pyruvate to the roots led to an increase of the oxygen consumption rate, which ultimately led to anoxia. The importance of balancing the in vivo pyruvate availability in the tissue was further investigated. Using various alcohol dehydrogenase knockout lines of Arabidopsis (Arabidopsis thaliana), it was shown that even under aerobic conditions, alcohol fermentation plays an important role in the control of the level of pyruvate in the tissue. Interestingly, alcohol fermentation appeared to be primarily induced by a drop in the energy status of the tissue rather than by a low oxygen concentration, indicating that sensing the energy status is an important component of optimizing plant metabolism to changes in the oxygen availability.
Modern anthropogenic forcing of atmospheric chemistry poses the question of how the Earth System will respond as thousands of gigatons of greenhouse gas are rapidly added to the atmosphere. A similar, albeit nonanthropogenic, situation occurred during the early Paleogene, when catastrophic release of carbon to the atmosphere triggered abrupt increase in global temperatures. The best documented of these events is the Paleocene-Eocene Thermal Maximum (PETM, ~55 Ma) when the magnitude of carbon addition to the oceans and atmosphere was similar to those expected for the future. This event initiated global warming, changes in hydrological cycles, biotic extinction and migrations. A recently proposed hypothesis concerning changes in marine ecosystems suggests that this global warming strongly influenced the shallow-water biosphere, triggering extinctions and turnover in the Larger Foraminifera (LF) community and the demise of corals. The successions from the Adriatic Carbonate Platform (SW Slovenia) represent an ideal location to test the hypothesis of a possible causal link between the PETM and evolution of shallow-water organisms because they record continuous sedimentation from the Late Paleocene to the Early Eocene and are characterized by a rich biota, especially LF, fundamental for detailed biostratigraphic studies. In order to reconstruct paleoenvironmental conditions during deposition, I focused on sedimentological analysis and paleoecological study of benthic assemblages. During the Late Paleocene-earliest Eocene, sedimentation occurred on a shallow-water carbonate ramp system characterized by enhanced nutrient levels. LF represent the common constituent of the benthic assemblages that thrived in this setting throughout the Late Paleocene to the Early Eocene. With detailed biostratigraphic and chemostratigraphic analyses documenting the most complete record to date available for the PETM event in a shallow-water marine environment, I correlated chemostratigraphically for the first time the evolution of LF with the δ¹³C curves. This correlation demonstrated that no major turnover in the LF communities occurred synchronous with the PETM; thus the evolution of LF was mainly controlled by endogenous biotic forces. The study of Late Thanetian metric-sized microbialite-coral mounds which developed in the middle part of the ramp, documented the first Cenozoic occurrence of microbially-cemented mounds. The development of these mounds, with temporary dominance of microbial communities over corals, suggest environmentally-triggered “phase shifts” related to frequent fluctuations of nutrient/turbidity levels during recurrent wet phases which preceding the extreme greenhouse conditions of the PETM. The paleoecological study of the coral community in the microbialites-coral mounds, the study of corals from Early Eocene platform from SW France, and a critical, extensive literature research of Late Paleocene – Early Eocene coral occurrences from the Tethys, the Atlantic, the Caribbean realms suggested that these corals types, even if not forming extensive reefs, are common in the biofacies as small isolated colonies, piles of rubble or small patch-reefs. These corals might have developed ‘alternative’ life strategies to cope with harsh conditions (high/fluctuating nutrients/turbidity, extreme temperatures, perturbation of aragonite saturation state) during the greenhouse times of the early Paleogene, representing a good fossil analogue to modern corals thriving close to their thresholds for survival. These results demonstrate the complexity of the biological responses to extreme conditions, not only in terms of temperature but also nutrient supply, physical disturbance and their temporal variability and oscillating character.
Upper Thanetian microbialite-coral mounds from the Adriatic Carbonate Platform (SW Slovenia) are described herein for the first time, representing an important case study of extensively microbially-cemented boundstones in the Early Paleogene. The mounds are constructed primarily by microbialites associated to small-sized coral colonies, forming metric bioconstructions in a mid-ramp setting. Detailed macroscopic and microscopic studies show that microbes are the major framework builders, playing a prominent role in the stabilization and growth of the mounds, with corals being the second most important component. Microbial carbonates represent up to 70% of the mounds, forming centimetric-thick crusts alternating with coral colonies. The microbial nature of the crusts is demonstrated by their growth form and internal microfabrics, showing accretionary, binding, and encrusting growth fabrics, often with gravity-defying geometries. Thin sections and polished slabs reveal a broad range of mesofabrics, with dense, structureless micrite (leiolite), laminated crusts (stromatolites), and clotted micritic masses (thrombolites). A first layer of micro- encrusters, including leiolites and thrombolites, occurs in cryptic habitats, whereas discontinuous stromatolites encrust the upper surface of corals. A second encrustation, the major mound construction phase, follows and is dominated by thrombolites, encrusting corals and other micro-encrusters. This sequence represents the basic constructional unit horizontally and vertically interlocked, in an irregular pattern, to form the mounds. The processes, which favored the deposition of these microbial carbonates, were mainly related to in situ precipitation, with minor evidences for grain agglutination and trapping processes. Scleractinian corals comprise moderately diversified community of small (centimetric) colonial, massive, platy encrusting, and branching forms. Coral colonies are distributed uniformly throughout the mounds without developing any ecological zonation. These features indicate that coral development remained at the pioneer stage throughout the mound growth. The spatial relationships between corals and microbialites, as well as the characteristics of microbial crusts and coral colonies, indicate a strong ecological competition between corals and microbes. A model for the evolution of the trophic structures during the mound growth is proposed, with changes in the paleoecology of the main bioconstructors triggered by frequent environmental perturbations. Turbidity and nutrient pressure, interpreted here as related to frequent recurrences of wet phases during the warm, humid climate of the Uppermost Thanetian, might have promoted temporary dominance of microbes over corals, causing rapid environmentally- driven "phase shifts" in the dominant biota.
"Tatsächlich steht das offiziell verkündete Wahlergebnis nicht im Widerspruch zu einer im Mai landesweit durchgeführten Umfrage eines US-Forschungsinstituts. Dieses sah Ahmadinedschad klar vor seinem größten Konkurrenten Mussavi. Vermeintliche Quellen aus dem iranischen Innenministerium dagegen sprachen nach der Wahl von einem Erdrutschsieg Mussavis. Indizien für einen Betrug gibt es viele..."
Sensory information entering the nervous system follows independent paths of processing such that specific features are individually detected. However, sensory perception, awareness, and cognition emerge from the combination of information. Here we have analyzed the corticocortical network of the cat, looking for the anatomical substrate which permits the simultaneous segregation and integration of information in the brain. We find that cortical communications are mainly governed by three topological factors of the underlying network: (i) a large density of connections, (ii) segregation of cortical areas into clusters, and (iii) the presence of highly connected hubs aiding the multisensory processing and integration. Statistical analysis of the shortest paths reveals that, while information is highly accessible to all cortical areas, the complexity of cortical information processing may arise from the rich and intricate alternative paths in which areas can influence each other.
The recent discovery of an intricate and nontrivial interaction topology among the elements of a wide range of natural systems has altered the manner we understand complexity. For example, the axonal fibres transmitting electrical information between cortical regions form a network which is neither regular nor completely random. Their structure seems to follow functional principles to balance between segregation (functional specialisation) and integration. Cortical regions are clustered into modules specialised in processing different kinds of information, e.g. visual or auditory. However, in order to generate a global perception of the real world, the brain needs to integrate the distinct types of information. Where this integration happens, nobody knows. We have performed an extensive and detailed graph theoretical analysis of the cortico-cortical organisation in the brain of cats, trying to relate the individual and collective topological properties of the cortical areas to their function. We conclude that the cortex possesses a very rich communication structure, composed of a mixture of parallel and serial processing paths capable of accommodating dynamical processes with a wide variety of time scales. The communication paths between the sensory systems are not random, but largely mediated by a small set of areas. Far from acting as mere transmitters of information, these central areas are densely connected to each other, strongly indicating their functional role as integrators of the multisensory information. In the quest of uncovering the structure-function relationship of cortical networks, the peculiarities of this network have led us to continuously reconsider the stablished graph measures. For example, a normalised formalism to identify the “functional roles” of vertices in networks with community structure is proposed. The tools developed for this purpose open the door to novel community detection techniques which may also characterise the overlap between modules. The concept of integration has been revisited and adapted to the necessities of the network under study. Additionally, analytical and numerical methods have been introduced to facilitate understanding of the complicated statistical interrelations between the distinct network measures. These methods are helpful to construct new significance tests which may help to discriminate the relevant properties of real networks from side-effects of the evolutionary-growth processes.
Laser-driven plasma sources of femtosecond hard X-ray pulses have found widespread application in ultrafast X- ray diffraction. The recent development of plasma sources working at kilohertz repetition rates has allowed for diffraction experiments with strongly improved sensitivity, now revealing subtle fully reversible changes of the geometry of crystal lattices. We provide a brief review of this development and present a novel plasma source with an optimized mechanical and optical design, providing a high flux of several 10(10) photons/s at the Cu-K alpha energy of 8.04 keV and a pulse duration of a parts per thousand currency sign300 fs. First experiments, including the generation of Debye-Scherrer diffraction patterns from Si powder, demonstrate the high performance of this source.
Wie stabil ist die Außenpolitik der Großen Koalition? Aufgrund ihrer Position als stellvertretende außenpolitische Sprecherin der SPD ist es der Autorin möglich, neben den Gemeinsamkeiten auch die entscheidenden Unterschiede zu beleuchten. Vor dem Hintergrund mehrerer Beispiele, wie dem EU-Beitritt der Türkei, stellt sie den Konsens zwischen CDU/ CSU und SPD als fragil heraus.
In this paper I argue that both parametric variation and the alleged differences between languages in terms of their internal complexity straightforwardly follow from the Strongest Minimalist Thesis that takes the Faculty of Language (FL) to be an optimal solution to conditions that neighboring mental modules impose on it. In this paper I argue that hard conditions like legibility at the linguistic interfaces invoke simplicity metrices that, given that they stem from different mental modules, are not harmonious. I argue that widely attested expression strategies, such as agreement or movement, are a direct result of conflicting simplicity metrices, and that UG, perceived as a toolbox that shapes natural language, can be taken to consist of a limited number of markings strategies, all resulting from conflicting simplicity metrices. As such, the contents of UG follow from simplicity requirements, and therefore no longer necessitate linguistic principles, valued or unvalued, to be innately present. Finally, I show that the SMT does not require that languages themselves have to be optimal in connecting sound to meaning.
Clustered codons that pair to low-abundance tRNA isoacceptors can form slow-translating regions in the mRNA and cause transient ribosomal arrest. We report that folding efficiency of the Escherichia coli multidomain protein Sufl can be severely perturbed by alterations in ribosome-mediated translational attenuation. Such alterations were achieved by global acceleration of the translation rate with tRNA excess in vitro or by synonymous substitutions to codons with highly abundant tRNAs both in vitro and in vivo. Conversely, the global slow-down of the translation rate modulated by low temperature suppresses the deleterious effect of the altered translational attenuation pattern. We propose that local discontinuous translation temporally separates the translation of segments of the peptide chain and actively coordinates their co-translational folding.
Synonymous codon usage and variations in the level of isoaccepting tRNAs exert a powerful selective force on translation fidelity. We have developed an algorithm to evaluate the relative rate of translation which allows large-scale comparisons of the non-uniform translation rate on the protein biogenesis. Using the complete genomes of Escherichia coli and Bacillus subtilis we show that stretches of codons pairing to minor tRNAs form putative sites to locally attenuate translation; thereby the tendency is to cluster in near proximity whereas long contiguous stretches of slow-translating triplets are avoided. The presence of slow-translating segments positively correlates with the protein length irrespective of the protein abundance. The slow-translating clusters are predominantly located down-stream of the domain boundaries presumably to fine-tune translational accuracy with the folding fidelity of multidomain proteins. Translation attenuation patterns at highly structurally and functionally conserved domains are preserved across the species suggesting a concerted selective pressure on the codon selection and species-specific tRNA abundance in these regions.
We use a data set of 35 surface pollen samples from lake sediments, moss polsters and top soils on the north- eastern Tibetan Plateau to explore the relationship between modern pollen assemblages and contemporary vegetation patterns. The surface pollen transect spanned four vegetation zones--alpine meadow, steppe, steppe desert and desert-- under different climatic/elevational conditions. Relative representation (R (rel)) values and Principal Components Analysis (PCA) were used to determine the relationships between modern pollen and vegetation and regional climate gradients. The results show that the main vegetation zones along the regional and elevational transects can be distinguished by their modern pollen spectra. Relative to Poaceae, a high representation of Artemisia, Nitraria and Chenopodiaceae was found, while Cyperaceae and Gentiana showed values in the middle range, and Ranunculaceae, Asteraceae, Ephedra and Fabaceae had low relative representation values. PCA results indicate a high correlation between the biogeoclimatic zones and annual precipitation and annual temperature and July temperature. The Artemisia/ Chenopodiaceae ratio and the Artemisia/Cyperaceae ratio are useful tools for qualitative and semi-quantitative palaeoenvironmental reconstruction on the north-eastern Tibetan Plateau. Surface lake sediments are found to have different palynomorph spectra from moss cushion and soil samples, reflecting the larger pollen source area in the contemporary vegetation for lakes.
Background: Multidirectional interactions in social networks can have a profound effect on mate choice behavior; e.g., Poecilia mexicana males show weaker expression of mating preferences when being observed by a rival. This may be an adaptation to reduce sperm competition risk, which arises because commonly preferred female phenotypes will receive attention also from surrounding males, and/or because other males can copy the focal male's mate choice. Do P. mexicana males indeed respond to perceived sperm competition risk? We gave males a choice between two females and repeated the tests under one of the following conditions: (1) an empty transparent cylinder was presented (control); (2) another ("audience") male inside the cylinder observed the focal male throughout the 2nd part, or (3) the audience male was presented only before the tests, but could not eavesdrop during the actual choice tests (non-specific sperm competition risk treatments); (4) the focal male could see a rival male interact sexually with the previously preferred, or (5) with the non-preferred female before the 2nd part of the tests (specific sperm competition risk treatments). Results: The strength of individual male preferences declined slightly also during the control treatment (1). However, this decrease was more than two-fold stronger in audience treatment (2), i.e., with non-specific sperm competition risk including the possibility for visual eavesdropping by the audience male. No audience effect was found in treatments (3) and (5), but a weak effect was also observed when the focal male had seen the previously preferred female sexually interact with a rival male (treatment 4; specific sperm competition risk). Conclusion: When comparing the two 'non-specific sperm competition risk' treatments, a very strong effect was found only when the audience male could actually observe the focal male during mate choice [treatment (2)]. This suggests that focal males indeed attempt to conceal their mating preferences so as to prevent surrounding males from copying their mate choice. When there is no potential for eavesdropping [treatment (3)], non-specific specific sperm competition risk seems to play a minor or no role. Our results also show that P. mexicana males tend to share their mating effort more equally among females when the resource value of their previously preferred mate decreases after mating with a rival male (perceived specific sperm competition risk), but this effect is comparatively weak.
Objective: Questionnaires are often applied in sports psychology to measure a person's trait or state. However, the extent to which the questionnaire captures differences because of trait or state influences is often unclear. The latent state-trait (LST) theory offers the opportunity to separate both variance sources. This separation allows estimating specific reliability coefficients. Design: The present paper gives a theoretical introduction to LST and its basic ideas. Using a real data set with N = 156 athletes we exemplify the steps necessary to derive the LST coefficients. All athletes filled out a comprehensive inventory assessing competitive anxiety on two occasions. Method: The data are analysed with structural equation models based on LST principles. Results: The results confirm the questionnaire's trait saturation. Conclusion: Finally, results are discussed in light of practical and theoretical implications.
The seismicity of the Kenya rift is characterized by high-frequency low-magnitude events concentrated along the rift axis. Its seismic character is typical for magmatically active continental rifts, where igneous material at a shallow depth causes extensive grid faulting and geothermal activity. Thermal overprinting and dike intrusion prohibit the buildup of large elastic strains, therefore prohibiting the generation of large-magnitude earthquakes. On 6 January 1928, the M-S 6.9 Subukia earthquake occurred on the Laikipia-Marmanet fault, the eastern rift-bounding structure of the central Kenya rift. It is the largest instrumentally recorded seismic event in the Kenya rift, standing in contrast to the current model of the rift's seismic character in which large earthquakes are not anticipated. Furthermore, the proximity of the ruptured fault and the rift axis is intriguing: The rift-bounding structure that ruptured in 1928 remains seismically active, capable of generating large-magnitude earthquakes, even though thermally weakened crust and better oriented structures are present along the rift axis nearby, prohibiting any significant buildup of elastic strain. We excavated the surface rupture of the 1928 Subukia earthquake to find evidence for preceding ground-rupturing earthquakes. We also made a total station survey of the site topography and mapped the site geology. We show that the Laikipia-Marmanet fault was repeatedly activated during the late Quaternary. We found evidence for six ground-rupturing earthquakes, including the 1928 earthquake. The topographic survey around the trench site revealed a degraded fault scarp of approximate to 7.5 m in height, offsetting a small debris slide. Using scarp-diffusion modeling, we estimated an uplift rate of U = 0.09-0.15 mm/yr, constraining the scarp age to 50-85 ka. Assuming an average fault dip of 55 degrees-75 degrees, the preferred uplift rate (0.15 mm/yr) accommodates approximately 10%-20% of the recent rate of extension (0.5 mm/yr) across the Kenya rift.
Motivations and research objectives: During the passage of rain water through a forest canopy two main processes take place. First, water is redistributed; and second, its chemical properties change substantially. The rain water redistribution and the brief contact with plant surfaces results in a large variability of both throughfall and its chemical composition. Since throughfall and its chemistry influence a range of physical, chemical and biological processes at or below the forest floor the understanding of throughfall variability and the prediction of throughfall patterns potentially improves the understanding of near-surface processes in forest ecosystems. This thesis comprises three main research objectives. The first objective is to determine the variability of throughfall and its chemistry, and to investigate some of the controlling factors. Second, I explored throughfall spatial patterns. Finally, I attempted to assess the temporal persistence of throughfall and its chemical composition. Research sites and methods: The thesis is based on investigations in a tropical montane rain forest in Ecuador, and lowland rain forest ecosystems in Brazil and Panama. The first two studies investigate both throughfall and throughfall chemistry following a deterministic approach. The third study investigates throughfall patterns with geostatistical methods, and hence, relies on a stochastic approach. Results and Conclusions: Throughfall is highly variable. The variability of throughfall in tropical forests seems to exceed that of many temperate forests. These differences, however, do not solely reflect ecosystem-inherent characteristics, more likely they also mirror management practices. Apart from biotic factors that influence throughfall variability, rainfall magnitude is an important control. Throughfall solute concentrations and solute deposition are even more variable than throughfall. In contrast to throughfall volumes, the variability of solute deposition shows no clear differences between tropical and temperate forests, hence, biodiversity is not a strong predictor of solute deposition heterogeneity. Many other factors control solute deposition patterns, for instance, solute concentration in rainfall and antecedent dry period. The temporal variability of the latter factors partly accounts for the low temporal persistence of solute deposition. In contrast, measurements of throughfall volume are quite stable over time. Results from the Panamanian research site indicate that wet and dry areas outlast consecutive wet seasons. At this research site, throughfall exhibited only weak or pure nugget autocorrelation structures over the studies lag distances. A close look at the geostatistical tools at hand provided evidence that throughfall datasets, in particular those of large events, require robust variogram estimation if one wants to avoid outlier removal. This finding is important because all geostatistical throughfall studies that have been published so far analyzed their data using the classical, non-robust variogram estimator.