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Kuras, Agnieszka ; Heincke, Bjoern H. ; Salehi, Sara ; Mielke, Christian ; Köllner, Nicole ; Rogass, Christian ; Altenberger, Uwe ; Burud, Ingunn
The integration of imaging spectroscopy and aeromagnetics provides a cost-effective and promising way to extend the initial analysis of a mineral deposit. While imaging spectroscopy retrieves surface spectral information, magnetic responses are used to determine magnetization at both shallower and greater depths using 2D and 3D modeling. Integration of imaging spectroscopy and magnetics improves upon knowledge concerning lithology with magnetic properties, enhances understanding of the geological origin of magnetic anomalies, and is a promising approach for analyzing a prospective area for minerals having a high iron-bearing content. To combine iron diagnostic information from airborne hyperspectral and magnetic data, we (a) used an iron absorption feature ratio to model pseudo-magnetic responses and compare them with the measured magnetic data and (b) estimated the apparent susceptibility along the surface by some equivalent source modeling, and compared them with iron ratios along the surface. For this analysis, a Modified Iron Feature Depth index was developed and compared to the surface geochemistry of the rock samples in order to validate the spectral information of iron. The comparison revealed a linear increase in iron absorption feature depths with iron content. The analysis was performed by empirically modeling the statistical relationship between the diagnostic absorption features of hyperspectral (HS) image spectra of selected rock samples and their corresponding geochemistry. Our results clearly show a link between the spectral absorption features and the magnetic response from iron-bearing ultra/-mafic rocks. The iron absorption feature ratio of Fe3+/Fe2+ integrated with aeromagnetic data (residual magnetic anomaly) allowed us to distinguish main rock types based on physical properties. This separation matches the lithology of the Niaqornarssuit complex, our study area in West Greenland.
Bacterial-fungal interactions under agricultural settings: from physical to chemical interactions
(2022)
Zhou, Yaqi ; Wang, Hongkai ; Xu, Sunde ; Liu, Kai ; Qi, Hao ; Wang, Mengcen ; Chen, Xiaoyulong ; Berg, Gabriele ; Ma, Zhonghua ; Cernava, Tomislav ; Chen, Yun
Bacteria and fungi are dominant members of environmental microbiomes. Various bacterial-fungal interactions (BFIs) and their mutual regulation are important factors for ecosystem functioning and health.
Such interactions can be highly dynamic, and often require spatiotemporally resolved assessments to understand the interplay which ranges from antagonism to mutualism. Many of these interactions are still poorly understood, especially in terms of the underlying chemical and molecular interplay, which is crucial for inter-kingdom communication and interference. BFIs are highly relevant under agricultural settings; they can be determinative for crop health.
Advancing our knowledge related to mechanisms underpinning the interactions between bacteria and fungi will provide an extended basis for biological control of pests and pathogens in agriculture.
Moreover, it will facilitate a better understanding of complex microbial community networks that commonly occur in nature. This will allow us to determine factors that are crucial for community assembly under different environmental conditions and pave the way for constructing synthetic communities for various biotechnological applications. Here, we summarize the current advances in the field of BFIs with an emphasis on agriculture.
Maier, Benjamin F. ; Wiedermann, Marc ; Burdinski, Angelique ; Klamser, Pascal P. ; Jenny, Mirjam A. ; Betsch, Cornelia ; Brockmann, Dirk
Background While the majority of the German population was fully vaccinated at the time (about 65%), COVID-19 incidence started growing exponentially in October 2021 with about 41% of recorded new cases aged twelve or above being symptomatic breakthrough infections, presumably also contributing to the dynamics. So far, it remained elusive how significant this contribution was and whether targeted non-pharmaceutical interventions (NPIs) may have stopped the amplification of the crisis. <br /> Methods We develop and introduce a contribution matrix approach based on the nextgeneration matrix of a population-structured compartmental infectious disease model to derive contributions of respective inter- and intragroup infection pathways of unvaccinated and vaccinated subpopulations to the effective reproduction number and new infections, considering empirical data of vaccine efficacies against infection and transmission. <br /> Results Here we show that about 61%-76% of all new infections were caused by unvaccinated individuals and only 24%-39% were caused by the vaccinated. Furthermore, 32%-51% of new infections were likely caused by unvaccinated infecting other unvaccinated. Decreasing the transmissibility of the unvaccinated by, e. g. targeted NPIs, causes a steeper decrease in the effective reproduction number R than decreasing the transmissibility of vaccinated individuals, potentially leading to temporary epidemic control. Reducing contacts between vaccinated and unvaccinated individuals serves to decrease R in a similar manner as increasing vaccine uptake. <br /> Conclusions A minority of the German population-the unvaccinated-is assumed to have caused the majority of new infections in the fall of 2021 in Germany. Our results highlight the importance of combined measures, such as vaccination campaigns and targeted contact reductions to achieve temporary epidemic control.
Diabetic foot ulcer (DFU) is a severe complication of diabetes and a challenging medical condition. Conventional treatments for DFU have not been effective enough to reduce the amputation rates, which urges the need for additional treatment. Stem cell-based therapy for DFU has been investigated over the past years. Its therapeutic effect is through promoting angiogenesis, secreting paracrine factors, stimulating vascular differentiation, suppressing inflammation, improving collagen deposition, and immunomodulation. It is controversial which type and origin of stem cells, and which administration route would be the most optimal for therapy. We reviewed the different types and origins of stem cells and routes of administration used for the treatment of DFU in clinical and preclinical studies. Diabetes leads to the impairment of the stem cells in the diseased patients, which makes it less ideal to use autologous stem cells, and requires looking for a matching donor. Moreover, angioplasty could be complementary to stem cell therapy, and scaffolds have a positive impact on the healing process of DFU by stem cell-based therapy. In short, stem cell-based therapy is promising in the field of regenerative medicine, but more studies are still needed to determine the ideal type of stem cells required in therapy, their safety, proper dosing, and optimal administration route.
Nitzbon, Jan ; Gadylyaev, Damir ; Schlüter, Steffen ; Köhne, John Maximilian ; Grosse, Guido ; Boike, Julia
The microstructure of permafrost ground contains clues to its formation and hence its preconditioning to future change.
We applied X-ray computed microtomography (CT) to obtain high-resolution data (Delta x = 50 mu m) of the composition of a 164 cm long permafrost core drilled in a Yedoma upland in north-eastern Siberia.
The CT analysis allowed the microstructures to be directly mapped and volumetric contents of excess ice, gas inclusions, and two distinct sediment types to be quantified. Using laboratory measurements of coarsely resolved core samples, we statistically estimated the composition of the sediment types and used it to indirectly quantify volumetric contents of pore ice, organic matter, and mineral material along the core.
We conclude that CT is a promising method for obtaining physical properties of permafrost cores which opens novel research potentials.
Steinhoff, Julia S. ; Wagner, Carina ; Taschler, Ulrike ; Wulff, Sascha ; Kiefer, Marie F. ; Petricek, Konstantin M. ; Wowro, Sylvia J. ; Oster, Moritz ; Flores, Roberto E. ; Yang, Na ; Li, Chen ; Meng, Yueming ; Sommerfeld, Manuela ; Weger, Stefan ; Henze, Andrea ; Raila, Jens ; Lass, Achim ; Schupp, Michael
Hepatocytes secrete retinol-binding pro-tein 4 (RBP4) into circulation, thereby mobilizing vitamin A from the liver to provide retinol for extrahepatic tissues. Obesity and insulin resistance are associated with elevated RBP4 levels in the blood.
However, in a previous study, we observed that chronically increased RBP4 by forced Rbp4 expres-sion in the liver does not impair glucose homeostasis in mice.
Here, we investigated the effects of an acute mobilization of hepatic vitamin A stores by hepatic overexpression of RBP4 in mice.
We show that he-patic retinol mobilization decreases body fat content and enhances fat turnover. Mechanistically, we found that acute retinol mobilization increases hepatic expression and serum levels of fibroblast growth factor 21 (FGF21), which is regulated by retinol mobilization and retinoic acid in primary hepato-cytes.
Moreover, we provide evidence that the insulin-sensitizing effect of FGF21 is associated with organ-specific adaptations in retinoid homeostasis.
Taken together, our findings identify a novel cross-talk between retinoid homeostasis and FGF21 in mice with acute RBP4-mediated retinol mobilization from the liver.
For an effectively one-dimensional, semi-infinite disordered system connected to a reservoir of tracer particles kept at constant concentration, we provide the dynamics of the concentration profile.
Technically, we start with the Montroll-Weiss equation of a continuous time random walk with a scale-free waiting time density.
From this we pass to a formulation in terms of the fractional diffusion equation for the concentration profile C(x, t) in a semi-infinite space for the boundary condition C(0, t) = C-0, using a subordination approach.
From this we deduce the tracer flux and the so-called breakthrough curve (BTC) at a given distance from the tracer source.
In particular, BTCs are routinely measured in geophysical contexts but are also of interest in single-particle tracking experiments.
For the "residual' BTCs, given by 1- P(x, t), we demonstrate a long-time power-law behaviour that can be compared conveniently to experimental measurements.
For completeness we also derive expressions for the moments in this constant-concentration boundary condition.
Optics is a core field in the curricula of secondary physics education. In this study, we present the development and validation of a test instrument in the field of optics, the ray optics in converging lenses concept inventory (ROC-CI). It was developed for and validated with middle school students, but can also be adapted for the use in higher levels of physics education.
The ROC-CI can be used as a formative or a summative assessment of students' conceptual understanding of image formation by converging lenses, assessing the following: (i) the overall understanding of fundamental concepts related to converging lenses, (ii) the understanding of specific concepts, and (iii) students' propensity for difficulties within this topic.
The initial ROC-CI consists of 16 multiple-choice items; however, one item was removed based on various quality checks.
We validated the ROC-CI thoroughly with distractor analyses, classical test theory, item response theory, structural analyses, and analyses of students' total scores at different measurement points as quantitative approaches, as well as student interviews and an expert survey as qualitative approaches. The quantitative analyses are mostly based on a dataset of N 1/4 318 middle school students who took the ROC-CI as a post-test. The student interviews were conducted with seven middle school students after they were taught the concepts of converging lenses.
The expert survey included five experts who evaluated both individual items and the test as a whole.
The analyses showed good to excellent results for the test instrument, corroborating the 15-item ROC-CI's validity and its compliance with the three foci outlined above.
Involvement in sport and exercise not only provides participants with health benefits but can be an important aspect of living a meaningful life. The COVID-19 pandemic and the temporary cessation of public life in March/April/May 2020 came with restrictions, which probably also made it difficult, if not impossible, to participate in certain types of sport or exercise. Following the philosophical position that different types of sport and exercise offer different ways of "relating to the world," this study explored (dis)continuity in the type of sport and exercise people practiced during the pandemic-related lockdown, and possible effects on mood. Data from a survey of 601 adult exercisers, collected shortly after the COVID-19 outbreak in Finland, were analyzed. Approximately one third (35%) of the participants changed their "worldmaking" and shifted to "I-Nature"-type activities. We observed worse mood during the pandemic in those who shifted from "I-Me," compared to those who had preferred the "I-Nature" relation already before the pandemic and thus experienced continuity. The clouded mood of those experiencing discontinuity may be the result of a temporary loss of "feeling at home" in their new exercise life-world. However, further empirical investigation must follow, because the observed effect sizes were small.
Razaghi-Moghadam, Zahra ; Sokolowska, Ewelina ; Sowa, Marcin A. ; Skirycz, Aleksandra ; Nikoloski, Zoran
Mining of metabolite-protein interaction networks facilitates the identification of design principles underlying the regulation of different cellular processes. However, identification and characterization of the regulatory role that metabolites play in interactions with proteins on a genome-scale level remains a pressing task. Based on availability of high-quality metabolite-protein interaction networks and genome-scale metabolic networks, here we propose a supervised machine learning approach, called CIRI that determines whether or not a metabolite is involved in a competitive inhibitory regulatory interaction with an enzyme. First, we show that CIRI outperforms the naive approach based on a structural similarity threshold for a putative competitive inhibitor and the substrates of a metabolic reaction. We also validate the performance of CIRI on several unseen data sets and databases of metabolite-protein interactions not used in the training, and demonstrate that the classifier can be effectively used to predict competitive inhibitory interactions. Finally, we show that CIRI can be employed to refine predictions about metabolite-protein interactions from a recently proposed PROMIS approach that employs metabolomics and proteomics profiles from size exclusion chromatography in E. coli to predict metaboliteprotein interactions. Altogether, CIRI fills a gap in cataloguing metabolite-protein interactions and can be used in directing future machine learning efforts to categorize the regulatory type of these interactions.
We have directly resolved in the present work the interfacial composition during and after the interactions of a saturated atmosphere of oil vapor with soluble surfactant solutions at a planar water/air interface for the first time. Experiments were conducted on interactions of hexane vapor with solutions of alkyltrimethylammonium bromides and sodium dodecyl sulfate to observe the balance between cooperativity and competition of the components at the interface.
In all cases, hexane adsorption was strongly enhanced by the presence of the surfactant, even at bulk surfactant concentrations four orders of magnitude below the critical micelle concentration. Cooperativity of the surfactant adsorption was observed only for sodium dodecyl sulfate at intermediate bulk concentrations, yet for all four systems, competition set in at higher concentrations, as hexane adsorption reduced the surfactant surface excess. The data fully supported the complete removal of hexane from the interface following venting of the system to remove the saturated atmosphere of oil vapor.
These results help to identify future experiments that would elaborate and could explain the cooperativity of surfactant adsorption, such as on cationic surfactants with short alkyl chains and a broader series of anionic surfactants. This work holds relevance for oil recovery applications with foam, where there is a gas phase saturated with oil vapor.
The human language processing mechanism assigns a structure to the incoming materials as they unfold. There is evidence that the parser prefers some attachment types over others; however, theories of sentence processing are still in dispute over the stage at which each source of information contributes to the parsing system. The present study aims to identify the nature of initial parsing decisions during sentence processing through manipulating attachment type and verbs' argument structure. To this end, we designed a self-paced reading task using globally ambiguous constructions in Dutch. The structures included double locative prepositional phrases (PPs) where the first PP could attach both to the verb (high attachment) and the noun preceding it (low attachment). To disambiguate the structures, we presented a visual context in the form of short animation clips prior to each reading task. Furthermore, we manipulated the argument structure of the sentences using 2- and 3-argument verbs. The results showed that parsing decisions were influenced by contextual cues depending on the argument structure of the verb. That is, the visual context overcame the preference for high attachment only in the case of 2-argument verbs, while this preference persisted in structures including 3-argument verbs as represented by longer reading times for the low attachment interpretations. These findings can be taken as evidence that our language processing system actively integrates information from linguistic and non-linguistic sources from the initial stages of analysis to build up meaning. We discuss our findings in light of serial and parallel models of sentence processing.
Describing the heterogeneous structure of forests is often challenging.
One possibility is to analyze forest biomass in different plots and to derive plot-based frequency distributions.
However, these frequency distributions depend on the plot size and thus are scale dependent.
This study provides insights about transferring them between scales. Understanding the effects of scale on distributions of biomass is particularly important for comparing information from different sources such as inventories, remote sensing and modeling, all of which can operate at different spatial resolutions. Reliable methods to compare results of vegetation models at a grid scale with field data collected at smaller scales are still missing.
The scaling of biomass and variables, which determine the forest biomass, was investigated for a tropical forest in Panama. Based on field inventory data from Barro Colorado Island, spanning 50 ha over 30 years, the distributions of aboveground biomass, biomass gain and mortality were derived at different spatial resolutions, ranging from 10 to 100 m. Methods for fitting parametric distribution functions were compared.
Further, it was tested under which assumptions about the distributions a simple stochastic simulation forest model could best reproduce observed biomass distributions at all scales. Also, an analytical forest model for calculating biomass distributions at equilibrium and assuming mortality as a white shot noise process was tested.
Scaling exponents of about 0.47 were found for the standard deviations of the biomass and gain distributions, while mortality showed a different scaling relationship with an exponent of 0.3. Lognormal and gamma distribution functions fitted with the moment matching estimation method allowed for consistent parameter transfers between scales. Both forest models (stochastic simulation and analytical solution) were able to reproduce observed biomass distributions across scales, when combined with the derived scaling relationships.
The study demonstrates a way of how to approach the scaling problem in model-data comparisons by providing a transfer relationship. Further research is needed for a better understanding of the mechanisms that shape the frequency distributions at the different scales.
Leidig, Tatjana ; Casale, Gino ; Wilbert, Jürgen ; Hennemann, Thomas ; Volpe, Robert J. ; Briesch, Amy ; Grosche, Michael
The current study examined the impact of the Good Behavior Game (GBG) on the academic engagement (AE) and disruptive behavior (DB) of at-risk students' in a German inclusive primary school sample using behavioral progress monitoring.
A multiple baseline design across participants was employed to evaluate the effects of the GBG on 35 primary school students in seven classrooms from grade 1 to 3 (M-age = 8.01 years, SDage = 0.81 years).
The implementation of the GBG was randomly staggered by 2 weeks across classrooms. Teacher-completed Direct Behavior Rating (DBR) was applied to measure AE and DB. We used piecewise regression and a multilevel extension to estimate the individual case-specific treatment effects as well as the generalized effects across cases.
Piecewise regressions for each case showed significant immediate treatment effects for the majority of participants (82.86%) for one or both outcome measures.
The multilevel approach revealed that the GBG improved at-risk students' classroom behaviors generally with a significant immediate treatment effect across cases (for AE, B = 0.74, p < 0.001; for DB, B = -1.29, p < 0.001).
The moderation between intervention effectiveness and teacher ratings of students' risks for externalizing psychosocial problems was significant for DB (B = -0.07, p = 0.047) but not for AE.
Findings are consistent with previous studies indicating that the GBG is an appropriate classroom-based intervention for at-risk students and expand the literature regarding differential effects for affected students.
In addition, the study supports the relevance of behavioral progress monitoring and data-based decision-making in inclusive schools in order to evaluate the effectiveness of the GBG and, if necessary, to modify the intervention for individual students or the whole group.
The chaotic spatio-temporal electrical activity during life-threatening cardiac arrhythmias like ventricular fibrillation is governed by the dynamics of vortex-like spiral or scroll waves. The organizing centers of these waves are called wave tips (2D) or filaments (3D) and they play a key role in understanding and controlling the complex and chaotic electrical dynamics. Therefore, in many experimental and numerical setups it is required to detect the tips of the observed spiral waves. Most of the currently used methods significantly suffer from the influence of noise and are often adjusted to a specific situation (e.g. a specific numerical cardiac cell model). In this study, we use a specific type of deep neural networks (UNet), for detecting spiral wave tips and show that this approach is robust against the influence of intermediate noise levels. Furthermore, we demonstrate that if the UNet is trained with a pool of numerical cell models, spiral wave tips in unknown cell models can also be detected reliably, suggesting that the UNet can in some sense learn the concept of spiral wave tips in a general way, and thus could also be used in experimental situations in the future (ex-vivo, cell-culture or optogenetic experiments).
Glaw, Frank ; Kohler, Jorn ; Hawlitschek, Oliver ; Ratsoavina, Fanomezana M. ; Rakotoarison, Andolalao ; Scherz, Mark D. ; Vences, Miguel
Evolutionary reduction of adult body size (miniaturization) has profound consequences for organismal biology and is an important subject of evolutionary research. Based on two individuals we describe a new, extremely miniaturized chameleon, which may be the world's smallest reptile species. The male holotype of Brookesia nana sp. nov. has a snout-vent length of 13.5 mm (total length 21.6 mm) and has large, apparently fully developed hemipenes, making it apparently the smallest mature male amniote ever recorded. The female paratype measures 19.2 mm snout-vent length (total length 28.9 mm) and a micro-CT scan revealed developing eggs in the body cavity, likewise indicating sexual maturity. The new chameleon is only known from a degraded montane rainforest in northern Madagascar and might be threatened by extinction. Molecular phylogenetic analyses place it as sister to B. karchei, the largest species in the clade of miniaturized Brookesia species, for which we resurrect Evoluticauda Angel, 1942 as subgenus name. The genetic divergence of B. nana sp. nov. is rather strong (9.914.9% to all other Evoluticauda species in the 16S rRNA gene). A comparative study of genital length in Malagasy chameleons revealed a tendency for the smallest chameleons to have the relatively largest hemipenes, which might be a consequence of a reversed sexual size dimorphism with males substantially smaller than females in the smallest species. The miniaturized males may need larger hemipenes to enable a better mechanical fit with female genitals during copulation. Comprehensive studies of female genitalia are needed to test this hypothesis and to better understand the evolution of genitalia in reptiles.
Wicaksono, Wisnu Adi ; Egamberdieva, Dilfuza ; Berg, Christian ; Mora, Maximilian ; Kusstatscher, Peter ; Cernava, Tomislav ; Berg, Gabriele
The desiccation of the Aral Sea represents one of the largest human-made environmental regional disasters. The salt- and toxin-enriched dried-out basin provides a natural laboratory for studying ecosystem functioning and rhizosphere assembly under extreme anthropogenic conditions.
Here, we investigated the prokaryotic rhizosphere communities of the native pioneer plant Suaeda acuminata (C.A.Mey.) Moq. in comparison to bulk soil across a gradient of desiccation (5, 10, and 40 years) by metagenome and amplicon sequencing combined with quantitative PCR (qPCR) analyses. The rhizosphere effect was evident due to significantly higher bacterial abundances but less diversity in the rhizosphere compared to bulk soil. Interestingly, in the highest salinity (5 years of desiccation), rhizosphere functions were mainly provided by archaeal communities.
Along the desiccation gradient, we observed a significant change in the rhizosphere microbiota, which was reflected by (i) a decreasing archaeon-bacterium ratio, (ii) replacement of halophilic archaea by specific plant-associated bacteria, i.e., Alphaproteobacteria and Actinobacteria, and (iii) an adaptation of specific, potentially plant-beneficial biosynthetic pathways.
In general, both bacteria and archaea were found to be involved in carbon cycling and fixation, as well as methane and nitrogen metabolism.
Analysis of metagenome-assembled genomes (MAGs) showed specific signatures for production of osmoprotectants, assimilatory nitrate reduction, and transport system induction.
Our results provide evidence that rhizosphere assembly by cofiltering specific taxa with distinct traits is a mechanism which allows plants to thrive under extreme conditions. Overall, our findings highlight a function-based rhizosphere assembly, the importance of plant-microbe interactions in salinated soils, and their exploitation potential for ecosystem restoration approaches.IMPORTANCE
The desertification of the Aral Sea basin in Uzbekistan and Kazakhstan represents one of the most serious anthropogenic environmental disasters of the last century. Since the 1960s, the world's fourth-largest inland body of water has been constantly shrinking, which has resulted in an extreme increase of salinity accompanied by accumulation of many hazardous and carcinogenic substances, as well as heavy metals, in the dried-out basin.
Here, we investigated bacterial and archaeal communities in the rhizosphere of pioneer plants by combining classic molecular methods with amplicon sequencing as well as metagenomics for functional insights.
By implementing a desiccation gradient, we observed (i) remarkable differences in the archaeon-bacterium ratio of plant rhizosphere samples, (ii) replacement of archaeal indicator taxa during succession, and (iii) the presence of specific, potentially plant-beneficial biosynthetic pathways in archaea present during the early stages.
In addition, our results provide hitherto-undescribed insights into the functional redundancy between plant-associated archaea and bacteria.
The desertification of the Aral Sea basin in Uzbekistan and Kazakhstan represents one of the most serious anthropogenic environmental disasters of the last century.
Since the 1960s, the world's fourth-largest inland body of water has been constantly shrinking, which has resulted in an extreme increase of salinity accompanied by accumulation of many hazardous and carcinogenic substances, as well as heavy metals, in the dried-out basin.
Vyse, Stuart A. ; Herzschuh, Ulrike ; Pfalz, Gregor ; Pestryakova, Lyudmila A. ; Diekmann, Bernhard ; Nowaczyk, Norbert ; Biskaborn, Boris K.
Lakes act as important sinks for inorganic and organic sediment components. However, investigations of sedimentary carbon budgets within glacial lakes are currently absent from Arctic Siberia. The aim of this paper is to provide the first reconstruction of accumulation rates, sediment and carbon budgets from a lacustrine sediment core from Lake Rauchuagytgyn, Chukotka (Arctic Siberia). We combined multiple sediment biogeochemical and sedimentological parameters from a radiocarbon-dated 6.5m sediment core with lake basin hydroacoustic data to derive sediment stratigraphy, sediment volumes and infill budgets. Our results distinguished three principal sediment and carbon accumulation regimes that could be identified across all measured environmental proxies including early Marine Isotope Stage 2 (MIS2) (ca. 29-23.4 ka cal BP), mid-MIS2-early MIS1 (ca. 23.4-11.69 ka cal BP) and the Holocene (ca. 11.69-present). Estimated organic carbon accumulation rates (OCARs) were higher within Holocene sediments (average 3.53 gOCm(-2) a(-1)) than Pleistocene sediments (average 1.08 gOCm(-2) a(-1)) and are similar to those calculated for boreal lakes from Quebec and Finland and Lake Baikal but significantly lower than Siberian thermokarst lakes and Alberta glacial lakes. Using a bootstrapping approach, we estimated the total organic carbon pool to be 0.26 +/- 0.02 Mt and a total sediment pool of 25.7 +/- 1.71 Mt within a hydroacoustically derived sediment volume of ca. 32 990 557m(3). The total organic carbon pool is substantially smaller than Alaskan yedoma, thermokarst lake sediments and Alberta glacial lakes but shares similarities with Finnish boreal lakes. Temporal variability in sediment and carbon accumulation dynamics at Lake Rauchuagytgyn is controlled predominantly by palaeoclimate variation that regulates lake ice-cover dynamics and catchment glacial, fluvial and permafrost processes through time. These processes, in turn, affect catchment and within-lake primary productivity as well as catchment soil development. Spatial differences compared to other lake systems at a trans-regional scale likely relate to the high-latitude, mountainous location of Lake Rauchuagytgyn.
The administrative language used in imperial and city chanceries illustrates formal language use in the Early Modern period, as most evident in its syntactic complexity. Since administrative language was considered prestigious by the literate people of the time, the syntactic features in question are increasingly found in other text types as well (Lötscher 1995, Schwitalla 2002). The present paper investigates early newspapers published in the seventeenth and eighteenth centuries to evalute their degree of syntactic complexity and hence the extent of formal language used. Contrary to common belief (Admoni 1980, von Polenz 2013), it will be shown that early newspapers do not allow a uniform assessment in terms of their syntactic complexity, when they emerge as a new genre in the seventeenth century: some news segments display a fairly simple syntax, whereas others are of high syntactic complexity. By the end of the eighteenth century, the growing conventionalization of the new genre as well as the impact of standardization processes render newspapers much more balanced in terms of syntactic complexity. Unlike previous work on the syntactic complexity of newspaper language, the measurement of syntactic complexity takes into account not only sentence length and the relationship between independent and dependent clauses, but also the placement of adverbial clauses in relation to their associated clause.
Büyükakpınar, Pınar ; Cesca, Simone ; Hainzl, Sebastian ; Jamalreyhani, Mohammadreza ; Heimann, Sebastian ; Dahm, Torsten
Reservoir-triggered seismicity has been observed near dams during construction, impoundment, and cyclic filling in many parts of the earth. In Turkey, the number of dams has increased substantially over the last decade, with Ataturk Dam being the largest dam in Turkey with a total water capacity of 48.7 billion m(3). After the construction of the dam, the monitoring network has improved. Considering earthquakes above the long-term completeness magnitude of M-C = 3.5, the local seismicity rate has substantially increased after the filling of the reservoir. Recently, two damaging earthquakes of M-w 5.5 and M-w 5.1 occurred in the town of Samsat near the Ataturk Reservoir in 2017 and 2018, respectively. In this study, we analyze the spatio-temporal evolution of seismicity and its source properties in relation to the temporal water-level variations and the stresses resulting from surface loading and pore-pressure diffusion. We find that water-level and seismicity rate are anti-correlated, which is explained by the stabilization effect of the gravitational induced stress imposed by water loading on the local faults. On the other hand, we find that the overall effective stress in the seismogenic zone increased over decades due to pore-pressure diffusion, explaining the enhanced background seismicity during recent years. Additionally, we observe a progressive decrease of the Gutenberg-Richter b-value. Our results indicate that the stressing rate finally focused on the region where the two damaging earthquakes occurred in 2017 and 2018.
Bartsch, Annett ; Pointner, Georg ; Nitze, Ingmar ; Efimova, Aleksandra ; Jakober, Dan ; Ley, Sarah ; Högström, Elin ; Grosse, Guido ; Schweitzer, Peter
The accelerating climatic changes and new infrastructure development across the Arctic require more robust risk and environmental assessment, but thus far there is no consistent record of human impact. We provide a first panarctic satellite-based record of expanding infrastructure and anthropogenic impacts along all permafrost affected coasts (100 km buffer, approximate to 6.2 Mio km(2)), named the Sentinel-1/2 derived Arctic Coastal Human Impact (SACHI) dataset. The completeness and thematic content goes beyond traditional satellite based approaches as well as other publicly accessible data sources. Three classes are considered: linear transport infrastructure (roads and railways), buildings, and other impacted area. C-band synthetic aperture radar and multi-spectral information (2016-2020) is exploited within a machine learning framework (gradient boosting machines and deep learning) and combined for retrieval with 10 m nominal resolution. In total, an area of 1243 km(2) constitutes human-built infrastructure as of 2016-2020. Depending on region, SACHI contains 8%-48% more information (human presence) than in OpenStreetMap. 221 (78%) more settlements are identified than in a recently published dataset for this region. 47% is not covered in a global night-time light dataset from 2016. At least 15% (180 km(2)) correspond to new or increased detectable human impact since 2000 according to a Landsat-based normalized difference vegetation index trend comparison within the analysis extent. Most of the expanded presence occurred in Russia, but also some in Canada and US. 31% and 5% of impacted area associated predominantly with oil/gas and mining industry respectively has appeared after 2000. 55% of the identified human impacted area will be shifting to above 0 C-circle ground temperature at two meter depth by 2050 if current permafrost warming trends continue at the pace of the last two decades, highlighting the critical importance to better understand how much and where Arctic infrastructure may become threatened by permafrost thaw.
Non-alcoholic fatty liver disease (NAFLD), as a consequence of overnutrition caused by high-calorie diets, results in obesity and disturbed lipid homeostasis leading to hepatic lipid droplet formation. Lipid droplets can impair hepatocellular function; therefore, it is of utmost importance to degrade these cellular structures. This requires the normal function of the autophagic-lysosomal system and the ubiquitin-proteasomal system. We demonstrated in NZO mice, a polygenic model of obesity, which were compared to C57BL/6J (B6) mice, that a high-fat diet leads to obesity and accumulation of lipid droplets in the liver. This was accompanied by a loss of autophagy efficiency whereas the activity of lysosomal proteases and the 20S proteasome remained unaffected. The disturbance of cellular protein homeostasis was further demonstrated by the accumulation of 3-nitrotyrosine and 4-hydroxynonenal modified proteins, which are normally prone to degradation. Therefore, we conclude that fat accumulation in the liver due to a high-fat diet is associated with a failure of autophagy and leads to the disturbance of proteostasis. This might further contribute to lipid droplet stabilization and accumulation.
Stolle, Claudia ; Michaelis, Ingo ; Xiong, Chao ; Rother, Martin ; Usbeck, Thomas ; Yamazaki, Yosuke ; Rauberg, Jan ; Styp-Rekowski, Kevin
The Gravity Recovery and Climate Experiment Follow-On (GRACE-FO) mission carries magnetometers that are dedicated to enhance the satellite's navigation. After appropriate calibration and characterisation of artificial magnetic disturbances, these observations are valuable assets to characterise the natural variability of Earth's magnetic field. We describe the data pre-processing, the calibration, and characterisation strategy against a high-precision magnetic field model applied to the GRACE-FO magnetic data. During times of geomagnetic quiet conditions, the mean residual to the magnetic model is around 1 nT with standard deviations below 10 nT. The mean difference to data of ESA's Swarm mission, which is dedicated to monitor the Earth's magnetic field, is mainly within +/- 10 nT during conjunctions. The performance of GRACE-FO magnetic data is further discussed on selected scientific examples. During a magnetic storm event in August 2018, GRACE-FO reveals the local time dependence of the magnetospheric ring current signature, which is in good agreement with results from a network of ground magnetic observations. Also, derived field-aligned currents (FACs) are applied to monitor auroral FACs that compare well in amplitude and statistical behaviour for local time, hemisphere, and solar wind conditions to approved earlier findings from other missions including Swarm. On a case event, it is demonstrated that the dual-satellite constellation of GRACE-FO is most suitable to derive the persistence of auroral FACs with scale lengths of 180 km or longer. Due to a relatively larger noise level compared to dedicated magnetic missions, GRACE-FO is especially suitable for high-amplitude event studies. However, GRACE-FO is also sensitive to ionospheric signatures even below the noise level within statistical approaches. The combination with data of dedicated magnetic field missions and other missions carrying non-dedicated magnetometers greatly enhances related scientific perspectives.
Mental health of Japanese workers: amotivation mediates self-compassion on mental health problems
(2022)
Workplace mental health is a cause for concern in many countries. Globally, 78% of the workforce experienced impairment of their mental health in 2020. In Japan, more than half of employees are mentally distressed.
Previously, research has identified that self-compassion (i.e., being kind and understanding towards oneself) and work motivation were important to their mental health.
However, how these three components relate to each other remains to be elucidated. Accordingly, this study aimed to examine the relationship between mental health problems, self-compassion and work motivation (i.e., intrinsic motivation, extrinsic motivation and amotivation).
A cross-sectional design was employed, where 165 Japanese workers completed self-report scales regarding those three components. A correlation and path analyses were conducted.
Mental health problems were positively associated with amotivation and negatively associated with age and self-compassion. While intrinsic motivation and extrinsic motivation did not mediate the impact of self-compassion on mental health problems, amotivation did.
The findings can help managers and organizational psychologists help identify effective approaches to improving work mental health.
Cortez, Nicole ; Marin, Victor ; Jimenez, Veronica A. ; Silva, Victor ; Leyton, Oscar ; Cabrera-Pardo, Jaime R. ; Schmidt, Bernd ; Heydenreich, Matthias ; Burgos, Viviana ; Duran, Paola ; Paz, Cristian
Fungal biotransformation is an attractive synthetic strategy to produce highly specific compounds with chemical functionality in regions of the carbon skeleton that are not easily activated by conventional organic chemistry methods.
In this work, Cladosporium antarcticum isolated from sediments of Glacier Collins in Antarctica was used to obtain novel drimane sesquiterpenoids alcohols with activity against Candida yeast from drimendiol and epidrimendiol. These compounds were produced by the high-yield reduction of polygodial and isotadeonal with NaBH4 in methanol.
Cladosporium antarcticum produced two major products from drimendiol, identified as 9 alpha-hydroxydrimendiol (1, 41.4 mg, 19.4% yield) and 3 beta-hydroxydrimendiol (2, 74.8 mg, 35% yield), whereas the biotransformation of epidrimendiol yielded only one product, 9 beta-hydroxyepidrimendiol (3, 86.6 mg, 41.6% yield).
The products were purified by column chromatography and their structure elucidated by NMR and MS. The antifungal activity of compounds 1-3 was analyzed against Candida albicans, C. krusei and C. parapsilosis, showing that compound 2 has a MIC lower than 15 mu g/mL against the three-pathogenic yeast.
In silico studies suggest that a possible mechanism of action for the novel compounds is the inhibition of the enzyme lanosterol 14 alpha-demethylase, affecting the ergosterol synthesis.
Trepka, Heiko ; Keller, Trevor ; Krautloher, Maximilian Josef ; Xu, J. ; Habicht, Klaus ; Böhm, Martin ; Keimer, Bernhard ; Hepting, Matthias
Materials realizing the XY model in two dimensions are sparse.
Here we use neutron triple-axis spectroscopy to investigate the critical static and dynamical magnetic fluctuations in the square-lattice antiferromagnets Ca2RuO4 and Ca3Ru2O7.
We probe the temperature dependence of the antiferromagnetic Bragg intensity, the Q width, the amplitude, and the energy width of the magnetic diffuse scattering in the vicinity of the Neel temperature T-N to determine the critical behavior of the magnetic order parameter M, correlation length xi, susceptibility chi, and the characteristic energy Gamma with the corresponding critical exponents beta, nu, gamma, and z, respectively.
We find that the critical behaviors of the single-layer compound Ca2RuO4 follow universal scaling laws that are compatible with predictions of the two-dimensional (2D) XY model.
The bilayer compound Ca3Ru2O7 is only partly consistent with the 2D XY theory and best described by the three-dimensional (3D) Ising model, which is likely a consequence of the intrabilayer exchange interactions in combination with an orthorhombic single-ion anisotropy.
Hence, our results suggest that layered ruthenates are promising solid-state platforms for research on the 2D XY model and the effects of 3D interactions and additional spin-space anisotropies on the magnetic fluctuations.
Mitochondrial stress-induced GFRAL signaling controls diurnal food intake and anxiety-like behavior
(2022)
Gil, Carla Igual ; Coull, Bethany M. ; Jonas, Wenke ; Lippert, Rachel N. ; Klaus, Susanne ; Ost, Mario
Growth differentiation factor 15 (GDF15) is a mitochondrial stressinduced cytokine that modulates energy balance in an endocrine manner.
However, the importance of its brainstem-restricted receptor GDNF family receptor alpha-like (GFRAL) to mediate endocrine GDF15 signaling to the brain uponmitochondrial dysfunction is still unknown. Using a mouse model with muscle-specific mitochondrial dysfunction, we here show that GFRAL is required for activation of systemic energy metabolism via daytime-restricted anorexia but not responsible for muscle wasting.
We further find that muscle mitochondrial stress response involves a GFRAL-dependent induction of hypothalamic corticotropin-releasing hormone, without elevated corticosterone levels.
Finally, we identify that GFRAL signaling governs an anxiety-like behavior in male mice with muscle mitochondrial dysfunction, with females showing a less robust GFRAL-dependent anxiety-like phenotype.
Together, we here provide novel evidence of a mitochondrial stress-induced muscle-brain crosstalk via the GDF15-GFRAL axis to modulate food intake and anxiogenic behavior.
Hirschberg, Stefan ; Bauer, Hannes ; Kamhieh-Milz, Julian ; Ringel, Frauke ; Harms, Christoph ; Eddin, Omar Kamal ; Pruss, Axel ; Hanack, Katja ; Schulze-Forster, Kai
A key in controlling the SARS-CoV-2 pandemic is the assessment of the immune status of the population. We explored the utility of SARS-CoV-2 virus-like particles (VLPs) as antigens to detect specific humoral immune reactions in an enzyme-linked immunosorbent assay (ELISA).
For this purpose, SARS-CoV-2 VLPs were produced from an engineered cell line and characterized by Western blot, ELISA, and nanoparticle tracking analysis.
Subsequently, we collected 42 serum samples from before the pandemic (2014), 89 samples from healthy subjects, and 38 samples from vaccinated subjects. Seventeen samples were collected less than three weeks after infection, and forty-four samples more than three weeks after infection.
All serum samples were characterized for their reactivity with VLPs and the SARS-CoV-2 N- and S-protein.
Finally, we compared the performance of the VLP-based ELISA with a certified in vitro diagnostic device (IVD). In the applied set of samples, we determined a sensitivity of 95.5% and a specificity of 100% for the certified IVD.
There were seven samples with an uncertain outcome. Our VLP-ELISA demonstrated a superior performance, with a sensitivity of 97.5%, a specificity of 100%, and only three uncertain outcomes.
This result warrants further research to develop a certified IVD based on SARS-CoV-2 VLPs as an antigen.
Das Anliegen der vorliegenden Arbeit ist die Vermittlung des antiken Verhältnisses zwischen Mensch und natürlicher Umgebung im Lateinunterricht sowie ein Vergleich mit der heutigen Situation. Die Ergründung jenes Verhältnisses erfolgt am Beispiel des antiken Bergbaus, eines besonders anschaulichen Feldes der Umweltgeschichte. Denn es weist ein hohes Maß an Aktualität auf sowie ein großes Potential, aus der Beschäftigung mit ihm Erkenntnisse für die Gegenwart zu gewinnen.
Vorgelegt wird eine Unterrichtskonzeption, die zugleich eine Analyse der menschlichen Naturwahrnehmung vornimmt. Zunächst wird dabei die Heterogenität dieser Wahrnehmung in der Antike aufgezeigt und in Bezug zur damals geäußerten Kritik am Bergbau gesetzt. Anschließend werden folgende Teilaspekte behandelt: 1. die antike bergbauliche Technik und Praxis, 2. die damals herrschenden Arbeitsbedingungen, 3. die gewonnenen Rohstoffe und ihre Verwendung sowie 4. die Folgen des Bergbaus für Mensch und Umwelt. Der didaktische Teil besteht aus einem Entwurf für drei Doppelstunden. Er enthält die Lehrmaterialien, die jeweiligen Erläuterungen und den Erwartungshorizont.
Petersen, Gesa Maria ; Cesca, Simone ; Heimann, Sebastian ; Niemz, Peter ; Dahm, Torsten ; Kuehn, Daniela ; Kummerow, Jorn ; Plenefisch, Thomas
The Alpine mountains in central Europe are characterized by a heterogeneous crust accumulating different tectonic units and blocks in close proximity to sedimentary foreland basins. Centroid moment tensor inversion provides insight into the faulting mechanisms of earthquakes and related tectonic processes but is significantly aggravated in such an environment. Thanks to the dense AlpArray seismic network and our flexible bootstrap-based inversion tool Grond, we are able to test different setups with respect to the uncertainties of the obtained moment tensors and centroid locations. We evaluate the influence of frequency bands, azimuthal gaps, input data types, and distance ranges and study the occurrence and reliability of non-double-couple (DC) components. We infer that for most earthquakes (M-w >= 3.3) a combination of time domain full waveforms and frequency domain amplitude spectra in a frequency band of 0.02-0.07 Hz is suitable. Relying on the results of our methodological tests, we perform deviatoric moment tensor (MT) inversions for events with M-w > 3.0. Here, we present 75 solutions for earthquakes between January 2016 and December 2019 and analyze our results in the seismotectonic context of historical earthquakes, seismic activity of the last 3 decades, and GNSS deformation data. We study regions of comparably high seismic activity during the last decades, namely the Western Alps, the region around Lake Garda, and the eastern Southern Alps, as well as clusters further from the study region, i.e., in the northern Dinarides and the Apennines. Seismicity is particularly low in the Eastern Alps and in parts of the Central Alps. We apply a clustering algorithm to focal mechanisms, considering additional mechanisms from existing catalogs. Related to the N-S compressional regime, E-W-to-ENE-WSW-striking thrust faulting is mainly observed in the Friuli area in the eastern Southern Alps. Strike-slip faulting with a similarly oriented pressure axis is observed along the northern margin of the Central Alps and in the northern Dinarides. NW-SE-striking normal faulting is observed in the NW Alps, showing a similar strike direction to normal faulting earthquakes in the Apennines. Both our centroid depths and hypocentral depths in existing catalogs indicate that Alpine seismicity is predominantly very shallow; about 80% of the studied events have depths shallower than 10 km.
The magnitude of earthquakes on continental normal faults rarely exceeds 7.0 Mw. However, because of their vicinity to large population centers they can be highly destructive.
Long recurrence time, relatively small deformations, and limited observations hinder our understanding of the deformation patterns and mechanisms controlling the magnitude of events.
Here, this problem is addressed with 2D thermomechanical modeling of normal fault seismic cycles.
The 2020 Samos, Greece Mw7.0 earthquake is used as an example as it is one of the largest and most studied continental normal fault earthquakes. The modeling approach employs visco-elasto-plastic rheology, compressibility, free surface, and a rate-and-state friction law for the fault.
Modeling of the Samos earthquake suggests the pore fluid pressure ratio on the fault ranges from 0 to 0.7. The model demonstrates that most of the deformation during interseismic and coseismic periods, besides on the fault, occurs in the hanging wall and footwall below the seismogenic part of the fault. The largest vertical surface displacement during the earthquake is the subsidence of the hanging wall in the vicinity of the fault, while the uplift of the footwall and remote part of the hanging wall is significantly smaller.
Modeling of the seismic cycles on normal faults with different setups shows the dependency of the magnitude on the thermal profile and dipping angle of the fault; low heat flow and low dipping angle are favorable conditions for the largest events, while steep normal faults in the areas of high heat flow tend to have the smallest magnitudes.
In a warming Arctic, permafrost-related disturbances, such as retrogressive thaw slumps (RTS), are becoming more abundant and dynamic, with serious implications for permafrost stability and bio-geochemical cycles on local to regional scales. Despite recent advances in the field of earth observation, many of these have remained undetected as RTS are highly dynamic, small, and scattered across the remote permafrost region. Here, we assessed the potential strengths and limitations of using deep learning for the automatic segmentation of RTS using PlanetScope satellite imagery, ArcticDEM and auxiliary datasets. We analyzed the transferability and potential for pan-Arctic upscaling and regional cross-validation, with independent training and validation regions, in six different thaw slump-affected regions in Canada and Russia. We further tested state-of-the-art model architectures (UNet, UNet++, DeepLabv3) and encoder networks to find optimal model configurations for potential upscaling to continental scales. The best deep learning models achieved mixed results from good to very good agreement in four of the six regions (maxIoU: 0.39 to 0.58; Lena River, Horton Delta, Herschel Island, Kolguev Island), while they failed in two regions (Banks Island, Tuktoyaktuk). Of the tested architectures, UNet++ performed the best. The large variance in regional performance highlights the requirement for a sufficient quantity, quality and spatial variability in the training data used for segmenting RTS across diverse permafrost landscapes, in varying environmental conditions. With our highly automated and configurable workflow, we see great potential for the transfer to active RTS clusters (e.g., Peel Plateau) and upscaling to much larger regions.
Hohmuth, Nils ; Khanyaree, Ifrah ; Lang, Anna-Lena ; Duering, Ohad ; Konigorski, Stefan ; Viskovic, Vukasin ; Heising, Tobias ; Egender, Friedemann ; Remschmidt, Cornelius ; Leistner, Rasmus
Background Mass gatherings (MGs) such as music festivals and sports events have been associated with a high risk of SARS-CoV-2 transmission. On-site research can foster knowledge of risk factors for infections and improve risk assessments and precautionary measures at future MGs. We tested a web-based participatory disease surveillance tool to detect COVID-19 infections at and after an outdoor MG by collecting self-reported COVID-19 symptoms and tests. Methods We conducted a digital prospective observational cohort study among fully immunized attendees of a sports festival that took place from September 2 to 5, 2021 in Saxony-Anhalt, Germany. Participants used our study app to report demographic data, COVID-19 tests, symptoms, and their contact behavior. This self-reported data was used to define probable and confirmed COVID-19 cases for the full "study period" (08/12/2021 - 10/31/2021) and within the 14-day "surveillance period" during and after the MG, with the highest likelihood of an MG-related COVID-19 outbreak (09/04/2021 - 09/17/2021). Results A total of 2,808 of 9,242 (30.4%) event attendees participated in the study. Within the study period, 776 individual symptoms and 5,255 COVID-19 tests were reported. During the 14-day surveillance period around and after the MG, seven probable and seven PCR-confirmed COVID-19 cases were detected. The confirmed cases translated to an estimated seven-day incidence of 125 per 100,000 participants (95% CI [67.7/100,000, 223/100,000]), which was comparable to the average age-matched incidence in Germany during this time. Overall, weekly numbers of COVID-19 cases were fluctuating over the study period, with another increase at the end of the study period. Conclusion COVID-19 cases attributable to the mass gathering were comparable to the Germany-wide age-matched incidence, implicating that our active participatory disease surveillance tool was able to detect MG-related infections. Further studies are needed to evaluate and apply our participatory disease surveillance tool in other mass gathering settings.
Munoz, Valeria ; Walter, Thomas R. ; Zorn, Edgar U. ; Shevchenko, Alina ; Gonzalez, Pablo J. ; Reale, Diego ; Sansosti, Eugenio
Magma-filled dikes may feed erupting fissures that lead to alignments of craters developing at the surface, yet the details of activity and migrating eruptions at the crater row are difficult to monitor and are hardly understood.
The 2021 Tajogaite eruption at the Cumbre Vieja, La Palma (Spain), lasted 85 days and developed a pronounced alignment of craters that may be related to changes within the volcano edifice.
Here, we use COSMO-SkyMed satellite radar data and ground-based time-lapse photographs, offering a high-resolution dataset to explore the locations and characteristics of evolving craters.
Our results show that the craters evolve both gradually and suddenly and can be divided into three main phases. Phase 1, lasting the first 6 weeks of the eruption, was characterized by a NW-SE linear evolution of up to seven craters emerging on the growing cone.
Following two partial collapses of the cone to the northwest and a seismicity increase at depth, Phase 2 started and caused a propagation of the main activity toward the southeastern side, together with the presence of up to 11 craters along this main NW-SE trend. Associated with strong deep and shallow earthquakes, Phase 3 was initiated and continued for the final 2 weeks of the eruption, expressed by the development of up to 18 craters, which became dominant and clustered in the southeastern sector in early December 2021. In Phase 3, a second and oblique alignment and surface fracture was identified.
Our findings that crater and eruption changes coincide together with an increase in seismic activity at depth point to a deep driver leading to crater and morphology changes at the surface.
These also suggest that crater distributions might allow for improved monitoring of changes occurring at depth, and vice versa, such that strong seismicity changes at depth may herald the migration and new formation of craters, which have major implications for the assessment of tephra and lava flow hazards on volcanoes.
Drimane sesquiterpene aldehydes control Candida yeast isolated from candidemia in Chilean patients
(2022)
Marin, Victor ; Bart, Bryan ; Cortez, Nicole ; Jiménez, Verónica A. ; Silva, Victor ; Leyton, Oscar ; Cabrera-Pardo, Jaime R. ; Schmidt, Bernd ; Heydenreich, Matthias ; Burgos, Viviana ; Paz, Cristian
Drimys winteri J.R. (Winteraceae) produce drimane sesquiterpenoids with activity against Candida yeast.
In this work, drimenol, polygodial (1), isotadeonal (2), and a new drimane alpha,beta-unsaturated 1,4-dialdehyde, named winterdial (4), were purified from barks of D. winteri. The oxidation of drimenol produced the monoaldehyde drimenal (3).
These four aldehyde sesquiterpenoids were evaluated against six Candida species isolated from candidemia patients in Chilean hospitals.
Results showed that 1 displays fungistatic activity against all yeasts (3.75 to 15.0 mu g/mL), but irritant effects on eyes and skin, whereas its non-pungent epimer 2 has fungistatic and fungicide activities at 1.9 and 15.0 mu g/mL, respectively.
On the other hand, compounds 3 and 4 were less active.
Molecular dynamics simulations suggested that compounds 1-4 are capable of binding to the catalytic pocket of lanosterol 14-alpha demethylase with similar binding free energies, thus suggesting a potential mechanism of action through the inhibition of ergosterol synthesis. According to our findings, compound 2 appears as a valuable molecular scaffold to pursue the future development of more potent drugs against candidiasis with fewer side effects than polygodial.
These outcomes are significant to broaden the alternatives to treat fungal infections with increasing prevalence worldwide using natural compounds as a primary source for active compounds.
Döpper, Veronika ; Jagdhuber, Thomas ; Holtgrave, Ann-Kathrin ; Heistermann, Maik ; Francke, Till ; Kleinschmit, Birgit ; Förster, Michael
Deriving soil moisture content (SMC) at the regional scale with different spatial and temporal land cover changes is still a challenge for active and passive remote sensing systems, often coped with machine learning methods.
So far, the reference measurements of the data-driven approaches are usually based on point data, which entails a scale gap to the resolution of the remote sensing data. Cosmic Ray Neutron Sensing (CRNS) indirectly provides SMC estimates of a soil volume covering more than 1 ha and vertical depth up to 80 cm and is thus able to narrow this scale gap.
So far, the CRNS-based SMC has only been used as validation source of remote sensing based SMC products. Its beneficial large sensing volume, especially in depth, has not been exploited yet.
However, the sensing volume of the CRNS, which is changing with hydrological conditions, bears challenges for the comparison with remote sensing observations. This study, for the fist time, aims to understand the direct linkage of optical (Sentinel 2) and SAR (Sentinel 1) data with CRNS-based SMC.
Thereby, the CRNS-based SMC is obtained by an experimental CRNS cluster that covers the high temporal and spatial SMC variability of an entire pre-alpine subcatchment. Using different Random Forest regressions, we analyze the potentials and limitations of both remote sensing sensors to follow the CRNS-based SMC signal.
Our results show that it is possible to link the CRNS-based SMC signal with SAR and optical remote sensing observations via Random Forest modelling.
We found that Sentinel 2 data is able to separate wet from dry periods with a R2 of 0.68.
It is less affected by the changing soil volume that contributes to the CRNS-based SMC signal and it is able to assign a land cover specific SMC distribution.
However, Sentinel 2 regression models are not accurate (R2 < 0.21) in mapping the CRNSbased SMC for the frequently mowed grassland areas of the study site. It requires soil type and topographical information to accurately follow the CRNS-based SMC signal with Random Forest regression.
Sentinel 1 data instead is affected by the changing soil volume that contributes to the CRNS-based SMC signal. It has reasonable model performance (R2 = 0.34) when the CRNS data correspond to surface SMC. Also for Sentinel 1 the retrieval is impacted by the mowing activities at the test site.
When separating the CRNS data set into dry and wet periods, soil properties and topography are the main drivers of SMC estimation. Sentinel 1 or Sentinel 2 data add the existing temporal variability to the regression models. The analysis underlines the need of combining optical and SAR observations (Sentinel 1, Sentinel 2) as well as soil property and topographical information to understand and follow the CRNS-based SMC signal for different hydrological conditions and land cover types.
Erdmann, Nina ; Schilling, Theresa ; Hentschel, Julia ; Lehmann, Thomas ; von Bismarck, Philipp ; Ankermann, Tobias ; Duckstein, Franziska ; Baier, Michael ; Zagoya, Carlos ; Mainz, Jochen G.
Background
In cystic fibrosis (CF), acute respiratory exacerbations critically enhance pulmonary destruction. Since these mainly occur outside regular appointments, they remain unexplored. We previously elaborated a protocol for home-based upper airway (UAW) sampling obtaining nasal-lavage fluid (NLF), which, in contrast to sputum, does not require immediate processing. The aim of this study was to compare UAW inflammation and pathogen colonization during stable phases and exacerbations in CF patients and healthy controls.
Methods
Initially, we obtained NLF by rinsing 10 ml of isotonic saline/nostril during stable phases. During exacerbations, subjects regularly collected NLF at home. CF patients directly submitted one aliquot for microbiological cultures. The remaining samples were immediately frozen until transfer on ice to our clinic, where PCR analyses were performed and interleukin (IL)-1 beta/IL-6/IL-8, neutrophil elastase (NE), matrix metalloproteinase (MMP)-9, and tissue inhibitor of metalloproteinase (TIMP)-1 were assessed.
Results
Altogether, 49 CF patients and 38 healthy controls (HCs) completed the study, and 214 NLF samples were analyzed. Of the 49 CF patients, 20 were at least intermittently colonized with P. aeruginosa and received azithromycin and/or inhaled antibiotics as standard therapy. At baseline, IL-6 and IL-8 tended to be elevated in CF compared to controls. During infection, inflammatory mediators increased in both cohorts, reaching significance only for IL-6 in controls (p=0.047). Inflammatory responses tended to be higher in controls [1.6-fold (NE) to 4.4-fold (MMP-9)], while in CF, mediators increased only moderately [1.2-1.5-fold (IL-6/IL-8/NE/TIMP-1/MMP-9)]. Patients receiving inhalative antibiotics or azithromycin (n=20 and n=15, respectively) revealed lower levels of IL-1 beta/IL-6/IL-8 and NE during exacerbation compared to CF patients not receiving those antibiotics. In addition, CF patients receiving azithromycin showed MMP-9 levels significantly lower than CF patients not receiving azithromycin at stable phase and exacerbation. Altogether, rhinoviruses were the most frequently detected virus, detected at least once in n=24 (49.0%) of the 49 included pwCF and in n=26 (68.4%) of the 38 healthy controls over the 13-month duration of the study. Remarkably, during exacerbation, rhinovirus detection rates were significantly higher in the HC group compared to those in CF patients (65.8% vs. 22.4%; p<0.0001).
Conclusion
Non-invasive and partially home-based UAW sampling opens new windows for the assessment of inflammation and pathogen colonization in the unified airway system.
Simple Summary
Urokinase-type plasminogen activator (urokinase, uPA) is a widely discussed biomarker for cancer prognosis and diagnosis. The gold standard for the determination of protein biomarkers in physiological samples is the enzyme-linked immunosorbent assay (ELISA). Here, antibodies are used to detect the specific protein.
In our study, recently published urokinase aptamers were tested for their use in a sandwich assay format as alternative specific recognition elements. Different aptamer combinations were used for the detection of uPA in a sandwich-assay format and a combination of aptamers and antibodies additionally allowed the differentiation of human high and low molecular weight- (HMW- and LMW-) uPA. Hence, uPA aptamers offer a valuable alternative as specific recognition elements for analytical purposes. Since aptamers are easy to synthesize and modify, they can be used as a cost-effective alternative in sandwich assay formats for the detection of uPA in physiological samples.
Abstract
Urokinase-type plasminogen activator (urokinase, uPA) is a frequently discussed biomarker for prognosis, diagnosis, and recurrence of cancer.
In a previous study, we developed ssDNA aptamers that bind to different forms of human urokinase, which are therefore assumed to have different binding regions.
In this study, we demonstrate the development of aptamer-based sandwich assays that use different combinations of these aptamers to detect high molecular weight- (HMW-) uPA in a micro titer plate format.
By combining aptamers and antibodies, it was possible to distinguish between HMW-uPA and low molecular weight- (LMW-) uPA.
For the best performing aptamer combination, we calculated the limit of detection (LOD) and limit of quantification (LOQ) in spiked buffer and urine samples with an LOD up to 50 ng/mL and 138 ng/mL, respectively.
To show the specificity and sequence dependence of the reporter aptamer uPAapt-02-FR, we have identified key nucleotides within the sequence that are important for specific folding and binding to uPA using a fluorescent dye-linked aptamer assay (FLAA). Since uPA is a much-discussed marker for prognosis and diagnosis in various types of cancers, these aptamers and their use in a micro titer plate assay format represent a novel, promising tool for the detection of uPA and for possible diagnostic applications.
Rapid innovation and proliferation of software as a medical device have accelerated the clinical use of digital technologies across a wide array of medical conditions.
Current regulatory pathways were developed for traditional (hardware) medical devices and offer a useful structure, but the evolution of digital devices requires concomitant innovation in regulatory approaches to maximize the potential benefits of these emerging technologies.
A number of specific adaptations could strengthen current regulatory oversight while promoting ongoing innovation.
New middle Miocene to Pliocene (~14–3 Ma) apatite fission track (AFT) cooling ages combined with published K–Ar/Ar–Ar and zircon fission track (ZFT) ages from the Hazara and Swat regions of Pakistan are used to explain the Oligocene to Pliocene structural evolution in the Western Himalaya. The structural model explains the distribution of K–Ar/Ar–Ar ages in three distinct age groups (Proterozoic, Paleozoic-Mesozoic, and Eocene to Oligocene). The Proterozoic to Mesozoic sequence of northern Hazara and Swat experienced elevated temperature and pressure conditions, evident by reset Eocene to Oligocene K–Ar/Ar–Ar hornblende and Eocene to Miocene muscovite ages, caused by Kohistan overthrusting the Indian margin during and after the India–Asia collision. Samples from the Indus syntaxis with Paleo to Mesoproterozoic K–Ar/Ar–Ar hornblende ages and Eocene to Oligocene Ar–Ar muscovite ages show no signs of Cenozoic metamorphism; these samples were thermally imprinted up to the Ar–Ar muscovite closure temperature. Neoproterozoic to Lower Paleozoic rocks from the southern parts of Hazara and Swat show Mesozoic to Oligocene partially reset Ar–Ar muscovite ages and preservation of Ordovician metamorphism. The combined analysis of published K–Ar/Ar–Ar (muscovite), ZFT, and new AFT ages (~14–12 Ma) suggests that the Main Central thrust/Panjal thrust was active from Oligocene to early Miocene (~30–18 Ma), and the Nathia-Gali and Main Boundary thrusts were active from the middle to late Miocene (~14–9 Ma) in the Hazara area. New and published AFT ages (~6–3 Ma) from the Indus syntaxis suggest that early Pliocene tectonic thickening in the hinterland formed the N–S trending Indus anticline, creating an erosional half window in the Main Mantle thrust, forming the Indus syntaxis, and dividing the Main Central thrust sheet into the Hazara and Swat segments.
Kasal, Meltem ; Besiroglu, Lutfullah ; Zorlu, Nabi ; Dikmeer, Nur ; Bilge, Aslihan ; Durmaz, Ercan ; Polat, Serap ; Gelal, Fazil ; Rapp, Michael A. ; Heinz, Andreas ; Sebold, Miriam
Recent theories suggest a shift from model-based goal-directed to model-free habitual decision-making in obsessive-compulsive disorder (OCD). However, it is yet unclear, whether this shift in the decision process is heritable. We investigated 32 patients with OCD, 27 unaffected siblings (SIBs) and 31 healthy controls (HCs) using the two-step task. We computed behavioral and reaction time analyses and fitted a computational model to assess the balance between model-based and model-free control. 80 subjects also underwent structural imaging. We observed a significant ordered effect for the shift towards model-free control in the direction OCD>SIB>HC in our computational parameter of interest. However less directed analyses revealed no shift towards model-free control in OCDs. Nonetheless, we found evidence for reduced model-based control in OCDs compared to HCs and SIBs via 2nd stage reaction time analyses. In this measure SIBs also showed higher levels of model-based control than HCs. Across all subjects these effects were associated with the surface area of the left medial/right dorsolateral prefrontal cortex. Moreover, correlations between bilateral putamen/right caudate volumes and these effects varied as a function of group: they were negative in SIBs and OCDs, but positive in HCs. Associations between fronto-striatal regions and model-based reaction time effects point to a potential endophenotype for OCD.
Radivoievych, Aleksandar ; Kolp, Benjamin ; Grebinyk, Sergii ; Prylutska, Svitlana ; Ritter, Uwe ; Zolk, Oliver ; Glökler, Jörn ; Frohme, Marcus ; Grebinyk, Anna
Hailed as an innovative concept in antiquity, Plotinus’ concept of the ‘we’ occupies a nuanced and somewhat elusive systematic position. On the one hand, it locates itself in the realm of the soul rather than the intellect; at the same time, however, it manifests a self-conscious dimension typically ascribed to the intellect rather than the soul. This paper attempts to resolve this ambiguity by interpreting the ‘we’ as a potential of self-consciousness, which explains why the ‘we’ can become similar to, but not identical with, the actual self-consciousness of the intellect. The proposed definition not only brings clarity to the seemingly paradoxical formulations surrounding the ‘we’ in Plotinus’ philosophy but also sheds light on the allegories that Plotinus employs.
Moreover, my analysis highlights the similarity between the Plotinian ‘we’ and the characterizations of the self within the Kantian tradition. Drawing on Cassirer’s dichotomy between concepts of substance and concepts of function, and Kant’s assertion that the ‘I think’ represents a potentiality rather than an actuality of self-consciousness, this study attempts to provide a conceptual bridge between the Plotinian and Kantian frameworks.
Schödl, Isabel ; Odemer, Richard ; Becher, Matthias A. ; Berg, Stefan ; Otten, Christoph ; Grimm, Volker ; Groeneveld, Jürgen
The BEEHAVE model simulates the population dynamics and foraging activity of a single honey bee colony (Apis mellifera) in great detail. Although it still makes numerous simplifying assumptions, it appears to capture a wide range of empirical observations.
It could, therefore, in principle, also be used as a tool in beekeeper education, as it allows the implementation and comparison of different management options.
Here, we focus on treatments aimed at controlling the mite Varroa destructor. However, since BEEHAVE was developed in the UK, mite treatment includes the use of a synthetic acaricide, which is not part of Good Beekeeping Practice in Germany.
A practice that consists of drone brood removal from April to June, treatment with formic acid in August/September, and treatment with oxalic acid in November/December. We implemented these measures, focusing on the timing, frequency, and spacing between drone brood removals.
The effect of drone brood removal and acid treatment, individually or in combination, on a mite-infested colony was examined. We quantify the efficacy of Varroa mite control as the reduction of mites in treated bee colonies compared to untreated bee colonies. We found that drone brood removal was very effective, reducing mites by 90% at the end of the first simulation year after the introduction of mites. This value was significantly higher than the 50-67% reduction expected by bee experts and confirmed by empirical studies.
However, literature reports varying percent reductions in mite numbers from 10 to 85% after drone brood removal. The discrepancy between model results, empirical data, and expert estimates indicate that these three sources should be reviewed and refined, as all are based on simplifying assumptions.
These results and the adaptation of BEEHAVE to the Good Beekeeping Practice are a decisive step forward for the future use of BEEHAVE in beekeeper education in Germany and anywhere where organic acids and drone brood removal are utilized.
Jiang, Feng ; Song, Junwei ; Bauer, Jonas ; Gao, Linyu ; Vallon, Magdalena ; Gebhardt, Reiner ; Leisner, Thomas ; Norra, Stefan ; Saathoff, Harald
The optical properties, chemical composition, and potential chromophores of brown carbon (BrC) aerosol particles were studied during typical summertime and wintertime at a kerbside in downtown Karl-sruhe, a city in central Europe.
The average absorption coefficient and mass absorption efficiency at 365 nm (Abs(365) and MAE(365)) of methanol-soluble BrC (MS-BrC) were lower in the summer period (1.6 +/- 0.5 Mm(-1), 0.5 +/- 0.2 m(2) g(-1)) than in the winter period (2.8 +/- 1.9 Mm(-1), 1.1 +/- 0.3 m(2) g(-1)). Using a parallel factor (PARAFAC) analysis to identify chromophores, two different groups of highly oxygenated humic-like substances (HO-HULIS) dominated in summer and contributed 96 +/- 6 % of the total fluorescence intensity.
In contrast, less-oxygenated HULIS (LO-HULIS) dominated the total fluorescence intensity in winter with 57 +/- 12 %, followed by HO-HULIS with 31 +/- 18 %. Positive matrix factorization (PMF) analysis of organic compounds detected in real time by an online aerosol mass spectrometer (AMS) led to five characteristic organic compound classes.
The statistical analysis of PARAFAC components and PMF factors showed that LO-HULIS chromophores were most likely emitted from biomass burning in winter. HO-HULIS chromophores could be low-volatility oxy-genated organic aerosol from regional transport and oxidation of biogenic volatile organic compounds (VOCs) in summer.
Five nitro-aromatic compounds (NACs) were identified by a chemical ionization mass spectrometer (C7H7O3N, C7H7O4N, C6H5O5N, C6H5O4N, and C6H5O3N), which contributed 0.03 +/- 0.01 % to the total organic mass but can explain 0.3 +/- 0.1 % of the total absorption of MS-BrC at 365 nm in winter.
Furthermore, we identified 316 potential brown carbon molecules which accounted for 2.5 +/- 0.6 % of the organic aerosol mass. Using an average mass absorption efficiency (MAE(365)) of 9.5 m(2)g(-1) for these compounds, we can es-timate their mean light absorption to be 1.2 +/- 0.2 Mm(-1), accounting for 32 +/- 15 % of the total absorption of MS-BrC at 365 nm.
This indicates that a small fraction of brown carbon molecules dominates the overall ab-sorption. The potential BrC molecules assigned to the LO-HULIS component had a higher average molecular weight (265 +/- 2 Da) and more nitrogen-containing molecules (62 +/- 1 %) than the molecules assigned to the HOHULIS components.
Our analysis shows that the LO-HULIS, with a high contribution of nitrogen-containing molecules originating from biomass burning, dominates aerosol fluorescence in winter, and HO-HULIS, with fewer nitrogen-containing molecules as low-volatility oxygenated organic aerosol from regional transport and oxidation of biogenic volatile organic compounds (VOC), dominates in summer.
Heinen, Darlene ; Heissel, Andreas ; Heinzel, Stephan ; Fydrich, Thomas ; Ströhle, Andreas ; Rapp, Michael A. ; Vogel, Heike
Background
Depression is a leading cause of disability worldwide and a significant contributor to the global burden of disease. Altered leptin levels are known to be associated with depressive symptoms, however discrepancies in the results of increased or decreased levels exist. Due to various limitations associated with commonly used antidepressant drugs, alternatives such as exercise therapy are gaining more importance. Therefore, the current study investigates whether depressed patients have higher leptin levels compared to healthy controls and if exercise is efficient to reduce these levels.
Methods
Leptin levels of 105 participants with major depressive disorder (MDD; 45.7% female, age mean ± SEM: 39.1 ± 1.0) and 34 healthy controls (HC; 61.8% female, age mean ± SEM: 36.0 ± 2.0) were measured before and after a bicycle ergometer test. Additionally, the MDD group was separated into three groups: two endurance exercise intervention groups (EX) differing in their intensities, and a waiting list control group (WL). Leptin levels were measured pre and post a 12-week exercise intervention or the waiting period.
Results
Baseline data showed no significant differences in leptin levels between the MDD and HC groups. As expected, correlation analyses displayed significant relations between leptin levels and body weight (HC: r = 0.474, p = 0.005; MDD: r = 0.198, p = 0.043) and even more with body fat content (HC: r = 0.755, p < 0.001; MDD: r = 0.675, p < 0.001). The acute effect of the bicycle ergometer test and the 12-week training intervention showed no significant changes in circulating leptin levels.
Conclusion
Leptin levels were not altered in patients with major depression compared to healthy controls and exercise, both the acute response and after 12 weeks of endurance training, had no effect on the change in leptin levels.
Trial registration
The study was registered at the German register for clinical studies (DRKS) and the International Clinical Trials Registry Platform of the World Health Organization https://trialsearch.who.int/Trial2.aspx?TrialID=DRKS00008869 on 28/07/2015.
Meyer, Philipp ; Cherstvy, Andrey G. ; Seckler, Henrik ; Hering, Robert ; Blaum, Niels ; Jeltsch, Florian ; Metzler, Ralf
How predictable is the next move of an animal? Specifically, which factors govern the short- and long-term motion patterns and the overall dynamics of land-bound, plant-eating animals in general and ruminants in particular? To answer this question, we here study the movement dynamics of springbok antelopes Antidorcas marsupialis. We propose several complementary statistical-analysis techniques combined with machine-learning approaches to analyze—across multiple time scales—the springbok motion recorded in long-term GPS tracking of collared springboks at a private wildlife reserve in Namibia. As a result, we are able to predict the springbok movement within the next hour with a certainty of about 20%. The remaining about 80% are stochastic in nature and are induced by unaccounted factors in the modeling algorithm and by individual behavioral features of springboks. We find that directedness of motion contributes approximately 17% to this predicted fraction. We find that the measure for directedeness is strongly dependent on the daily cycle of springbok activity. The previously known daily affinity of springboks to their water points, as predicted from our machine-learning algorithm, overall accounts for only about 3% of this predicted deterministic component of springbok motion. Moreover, the resting points are found to affect the motion of springboks at least as much as the formally studied effects of water points. The generality of these statements for the motion patterns and their underlying behavioral reasons for other ruminants can be examined on the basis of our statistical-analysis tools in the future.