Refine
Year of publication
Document Type
- Article (84)
- Postprint (9)
- Other (4)
- Review (3)
- Conference Proceeding (1)
Keywords
- Wind erosion (6)
- Soil erosion (5)
- Biosilicification (4)
- Alcohol dependence (3)
- Biogenic silica (3)
- Euglyphida (3)
- Pavlovian-to-instrumental transfer (3)
- agriculture (3)
- multispectral (3)
- soil landscape (3)
Institute
- Institut für Geowissenschaften (48)
- Institut für Umweltwissenschaften und Geographie (22)
- Institut für Biochemie und Biologie (11)
- Department Sport- und Gesundheitswissenschaften (6)
- Mathematisch-Naturwissenschaftliche Fakultät (6)
- Department Psychologie (5)
- Strukturbereich Kognitionswissenschaften (3)
- Extern (2)
- Institut für Physik und Astronomie (2)
- Fachgruppe Volkswirtschaftslehre (1)
The identification of buried soil horizons in agricultural landscapes helps to quantify sediment budgets and erosion-related carbon dynamics. High-resolution mapping of buried horizons using conventional soil surveys is destructive and time consuming. Geoelectrical sensors can offer a fast and non-destructive alternative for determining horizon positions and properties. In this paper, we compare the suitability of several geoelectrical methods for measuring the depth to buried horizons (Apb, Ahb and Hab) in the hummocky ground moraine landscape of northeastern Germany. Soil profile descriptions were developed for 269 locations within a 6-ha experimental field "CarboZALF-D". A stepwise linear discriminant analysis (LDA) estimated the lateral position of the buried horizons using electromagnetic induction data and terrain attributes. To predict the depth of a buried horizon, multiple linear regression (MLR) was used for both a 120-m transect and a 0.2-ha pseudo-three-dimensional (3D) area. At these scales, apparent electrical conductivity (ECa), electrical resistivity (ER) and terrain attributes were used as independent variables. The LDA accurately predicted Apb- and Ahb-horizons (a correct classification of 93%). The LDA of the Hab-horizon had a misclassification of 24%, which was probably related to the smaller test set and the higher depth of this horizon. The MLR predicted the depth of the Apb-, Ahb- and Hab-horizons with relative root mean square errors (RMSEs) of 7, 3 and 13%, respectively, in the pseudo-3D area. MLR had a lower accuracy for the 2D transect compared to the pseudo-3D area. Overall, the use of LDA and MLR has been an efficient methodological approach for predicting buried horizon positions. Highlights The suitability of geoelectrical measurements for digital modelling of diagnostic buried soil horizons was determined. LDA and MLR were used to detect multiple horizons with geoelectrical devices and terrain attributes. Geoelectrical variables were significant predictors of the position of the target soil horizons. The use of these tested digital technologies gives an opportunity to develop high-resolution soil mapping procedures.
Near the end of the Pleistocene epoch, populations of the woolly mammoth (Mammuthus primigenius) were distributed across parts of three continents, from western Europe and northern Asia through Beringia to the Atlantic seaboard of North America. Nonetheless, questions about the connectivity and temporal continuity of mammoth populations and species remain unanswered. We use a combination of targeted enrichment and high-throughput sequencing to assemble and interpret a data set of 143 mammoth mitochondrial genomes, sampled from fossils recovered from across their Holarctic range. Our dataset includes 54 previously unpublished mitochondrial genomes and significantly increases the coverage of the Eurasian range of the species. The resulting global phylogeny confirms that the Late Pleistocene mammoth population comprised three distinct mitochondrial lineages that began to diverge ~1.0–2.0 million years ago (Ma). We also find that mammoth mitochondrial lineages were strongly geographically partitioned throughout the Pleistocene. In combination, our genetic results and the pattern of morphological variation in time and space suggest that male-mediated gene flow, rather than large-scale dispersals, was important in the Pleistocene evolutionary history of mammoths.
Separation of coarse organic particles from bulk surface soil samples by electrostatic attraction
(2009)
Different separation procedures are suggested for studying the stability and functionality of sod organic matter (OM). Density fractionation procedures using high-molarity, water-based salt solutions to separate organic particles may cause losses or transfers of C between particle and soluble OM fractions during separation, which may be a result of solution processes. The objective of this study was to separate coarse organic particles (>0.315 mm) from air- dried surface soil samples to avoid such solution processes as far as possible. Air-dried surface soil samples (<2 mm) from nine adjacent arable and forest sites were sieved into five soil particle size fractions (2-1.25, 1.25-0.8, 0.8- 0.5, 0.5-0.4, and 0.4-0.315 mm). Coarse organic particles were separated from each of these fractions using electrostatic attraction by a charged glass surface. The sum of the total dry matter content of the electrostatically separated coarse organic particles ranged from 0.05 to 140 g kg(-1). Scanning electron microscopy images and organic C (OC) analyses indicated, however, that the coarse organic particle fractions were also composed of 20 to 76% mineral particles (i.e., 200-760 g mineral kg(-1) fraction). The repeatability of the electrostatic attraction procedure falls within a range similar to that of accepted density fractionation methods using high-molarity salt solutions. Based on the similarity in repeatability, we suggest that the electrostatic attraction procedure will successfully remove coarse organic particles (>0.315 mm) from air-dried surface soil samples. Because aqueous solutions are not used, the electrostatic attraction procedure to separate coarse organic particles avoids C losses and transfers associated with solution-dependent techniques. Therefore, this method can be used as a pretreatment for subsequent density- or solubility-based soil OM fractionation procedures.
Questions remain about the exact ultrasonic energy level that is required to effectively disperse soil aggregates and to what extent this is accompanied by physical damage to individual soil particles. We found maximum aggregate dispersion at energy levels of 1500 J?cm3 and no evidence for the disintegration of particles < 20 mu m even at that energy level. Our findings suggest that sonication at energies much greater than those applied conventionally can disperse aggregates of high mechanical stability.
Land use and mineral characteristics affect the ability of surface as well as subsurface soils to sequester organic carbon and their contribution to mitigation of the greenhouse effect. There is less information about the effects of land use and soil properties on the amount and composition of organic matter (OM) for subsurface soils as compared with surface soils. Here we aimed to analyse the long-term (>= 100 years) impact of arable and forest land use and soil mineral characteristics on subsurface soil organic carbon (SOC) contents, as well as on amount and composition of OM sequentially separated by Na pyrophosphate solution (OM(PY)) from subsurface soil samples. Seven soils with different mineral characteristics (Albic and Haplic Luvisol, Colluvic and Haplic Regosol, Haplic and Vertic Cambisol, Haplic Stagnosol) were selected from within Germany. Soil samples were taken from subsurface horizons of forest and adjacent arable sites continuously used for > 100 years. The OM(PY) fractions were analysed for their OC content (OC(PY)) and characterized by Fourier transform infrared spectroscopy. Multiple regression analyses for the arable subsurface soils indicated significant positive relationships between the SOC contents and combined effects of the (i) exchangeable Ca (Ca(ex)) and oxalate-soluble Fe (Fe(ox)) and (ii) the Ca(ex) and Al(ox) contents. For these soils the increase in OC (OC(PY) multiplied by the relative C=O content of OM(PY)) and increasing contents of Ca(ex) indicated that OM(PY) mainly interacts with Ca2+. For the forest subsurface soils (pH < 5), the OC(PY) contents were related to the contents of Na-pyrophosphate-soluble Fe and Al. The long-term arable and forest land use seems to result in different OM(PY)-mineral interactions in subsurface soils. On the basis of this, we hypothesize that a long-term land-use change from arable to forest may lead to a shift from mainly OM(PY)-Ca2+ to mainly OM(PY)-Fe3+ and -Al3+ interactions if the pH of subsurface soils significantly decreases to < 5.
Identifying the chemical mechanisms behind soil carbon bound in organo-mineral complexes is necessary to determine the degree to which soil organic carbon is stabilized belowground. Analysis of delta C-13 and delta N-15 isotopic signatures of stabilized OM fractions along with soil mineral characteristics may yield important information about OM-mineral associations and their processing history. We anlayzed the delta C-13 and delta N-15 isotopic signatures from two organic matter (OM) fractions along with soil mineral proxies to identify the likely binding mechanisms involved. We analyzed OM fractions hypothesized to contain carbon stabilized through organo-mineral complexes: (1) OM separated chemically with sodium pyrophosphate (OM(PY)) and (2) OM occluded in micro-structures found in the chemical extraction residue (OM(ER)). Because the OM fractions were separated from five different soils with paired forest and arable land use histories, we could address the impact of land use change on carbon binding and processing mechanisms. We used partial least squares regression to analyze patterns in the isotopic signature of OM with established mineral and chemical proxies indicative for certain binding mechanisms. We found different mechanisms predominate in each land use type. For arable soils, the formation of OM(PY)-Ca-mineral associations was identified as an important OM binding mechanism. Therefore, we hypothesize an increased stabilization of microbial processed OM(PY) through Ca2+ interactions. In general, we found the forest soils to contain on average 10% more stabilized carbon relative to total carbon stocks, than the agricultural counter part. In forest soils, we found a positive relationship between isotopic signatures of OM(PY) and the ratio of soil organic carbon content to soil surface area (SOC/SSA). This indicates that the OM(PY) fractions of forest soils represent layers of slower exchange not directly attached to mineral surfaces. From the isotopic composition of the OM(ER) fraction, we conclude that the OM in this fraction from both land use types have undergone a different pathway to stabilization that does not involve microbial processing, which may include OM which is highly protected within soil micro-structures.
Mineral topsoils possess large organic carbon (OC) contents but there is only limited knowledge on the mechanisms controlling the preservation of organic matter (OM) against microbial decay. Samples were taken from the uppermost mineral topsoil horizon (0 to 5 cm) of seven sites under mature deciduous forest showing OC contents between 69 and 164 g kg(-1) and a wide range in mineral characteristics. At first, organic particles and the water-extractable OM were removed from the soil samples. Thereafter, Na-pyrophosphate extractable organic matter (OM(PY)), assumed to be indicative for OM bound via cation mediated interactions, and the OM remaining in the extraction residue (OM(ER)), supposed to be indicative for OM occluded in mechanically highly stable micro-aggregates, were sequentially separated and quantified. The composition of OM(PY) and OM(ER) was analyzed by FTIR and their stability by C-14 measurements. The OC remaining in the extraction residues accounted for 38 to 59% of the bulk soil OC (SOC) suggesting a much larger relevance of OM(ER) for the OM dynamic in the analyzed soils as compared with OM(PY) that accounted for 1.6 to 7.5% of the SOC. The FUR analyses revealed a lower relative proportion of C=O groups in OM(ER) compared to OM(PY) indicating differences in the degree of microbial processing between these fractions. Correlation analyses suggest an increase in the stability of OM(PY) with the soil pH and contents of Na-pyrophosphate soluble Fe, Al, and Mg and an increase in the stability of OM(ER) with the soil pH and the contents of clay and oxalate-soluble Fe and Al. Despite the detected influence of soil mineral characteristics on the turnover of OM(PY) and OM(ER), the Delta C-14 signatures indicated mean residence times less than 100 years. The presence of less stabilized OM in these fractions can be derived from methodological uncertainties and/or the fast cycling compartment of mineral-associated OM. (C) 2015 Elsevier B.V. All rights reserved.
We applied a top-down systems biology approach to understand how Chlamydomonas reinhardtii acclimates to long-term heat stress (HS) and recovers from it. For this, we shifted cells from 25 to 42 degrees C for 24 h and back to 25 degrees C for >= 8 h and monitored abundances of 1856 proteins/protein groups, 99 polar and 185 lipophilic metabolites, and cytological and photosynthesis parameters. Our data indicate that acclimation of Chlamydomonas to long-term HS consists of a temporally ordered, orchestrated implementation of response elements at various system levels. These comprise (1) cell cycle arrest; (2) catabolism of larger molecules to generate compounds with roles in stress protection; (3) accumulation of molecular chaperones to restore protein homeostasis together with compatible solutes; (4) redirection of photosynthetic energy and reducing power from the Calvin cycle to the de novo synthesis of saturated fatty acids to replace polyunsaturated ones in membrane lipids, which are deposited in lipid bodies; and (5) when sinks for photosynthetic energy and reducing power are depleted, resumption of Calvin cycle activity associated with increased photorespiration, accumulation of reactive oxygen species scavengers, and throttling of linear electron flow by antenna uncoupling. During recovery from HS, cells appear to focus on processes allowing rapid resumption of growth rather than restoring pre-HS conditions.
In animals and humans, behavior can be influenced by irrelevant stimuli, a phenomenon called Pavlovian-to-instrumental transfer (PIT). In subjects with substance use disorder, PIT is even enhanced with functional activation in the nucleus accumbens (NAcc) and amygdala. While we observed enhanced behavioral and neural PIT effects in alcohol-dependent subjects, we here aimed to determine whether behavioral PIT is enhanced in young men with high-risk compared to low-risk drinking and subsequently related functional activation in an a-priori region of interest encompassing the NAcc and amygdala and related to polygenic risk for alcohol consumption. A representative sample of 18-year old men (n = 1937) was contacted: 445 were screened, 209 assessed: resulting in 191 valid behavioral, 139 imaging and 157 genetic datasets. None of the subjects fulfilled criteria for alcohol dependence according to the Diagnostic and Statistical Manual of Mental Disorders-IV-TextRevision (DSM-IV-TR). We measured how instrumental responding for rewards was influenced by background Pavlovian conditioned stimuli predicting action-independent rewards and losses. Behavioral PIT was enhanced in high-compared to low-risk drinkers (b = 0.09, SE = 0.03, z = 2.7, p < 0.009). Across all subjects, we observed PIT-related neural blood oxygen level-dependent (BOLD) signal in the right amygdala (t = 3.25, p(SVC) = 0.04, x = 26, y = -6, z = -12), but not in NAcc. The strength of the behavioral PIT effect was positively correlated with polygenic risk for alcohol consumption (r(s) = 0.17, p = 0.032). We conclude that behavioral PIT and polygenic risk for alcohol consumption might be a biomarker for a subclinical phenotype of risky alcohol consumption, even if no drug-related stimulus is present. The association between behavioral PIT effects and the amygdala might point to habitual processes related to out PIT task. In non-dependent young social drinkers, the amygdala rather than the NAcc is activated during PIT; possible different involvement in association with disease trajectory should be investigated in future studies.
Background
Non-invasive transcutaneous auricular vagus nerve stimulation (taVNS) has received tremendous attention as a potential neuromodulator of cognitive and affective functions, which likely exerts its effects via activation of the locus coeruleus-noradrenaline (LC-NA) system. Reliable effects of taVNS on markers of LC-NA system activity, however, have not been demonstrated yet.
Methods
The aim of the present study was to overcome previous limitations by pooling raw data from a large sample of ten taVNS studies (371 healthy participants) that collected salivary alpha-amylase (sAA) as a potential marker of central NA release.
Results
While a meta-analytic approach using summary statistics did not yield any significant effects, linear mixed model analyses showed that afferent stimulation of the vagus nerve via taVNS increased sAA levels compared to sham stimulation (b = 0.16, SE = 0.05, p = 0.001). When considering potential confounders of sAA, we further replicated previous findings on the diurnal trajectory of sAA activity.
Conclusion(s)
Vagal activation via taVNS increases sAA release compared to sham stimulation, which likely substantiates the assumption that taVNS triggers NA release. Moreover, our results highlight the benefits of data pooling and data sharing in order to allow stronger conclusions in research.
Background
Non-invasive transcutaneous auricular vagus nerve stimulation (taVNS) has received tremendous attention as a potential neuromodulator of cognitive and affective functions, which likely exerts its effects via activation of the locus coeruleus-noradrenaline (LC-NA) system. Reliable effects of taVNS on markers of LC-NA system activity, however, have not been demonstrated yet.
Methods
The aim of the present study was to overcome previous limitations by pooling raw data from a large sample of ten taVNS studies (371 healthy participants) that collected salivary alpha-amylase (sAA) as a potential marker of central NA release.
Results
While a meta-analytic approach using summary statistics did not yield any significant effects, linear mixed model analyses showed that afferent stimulation of the vagus nerve via taVNS increased sAA levels compared to sham stimulation (b = 0.16, SE = 0.05, p = 0.001). When considering potential confounders of sAA, we further replicated previous findings on the diurnal trajectory of sAA activity.
Conclusion(s)
Vagal activation via taVNS increases sAA release compared to sham stimulation, which likely substantiates the assumption that taVNS triggers NA release. Moreover, our results highlight the benefits of data pooling and data sharing in order to allow stronger conclusions in research.
We hypothesized that at the very beginning of terrestrial ecosystem development, airborne testate amoebae play a pivotal role in facilitating organismic colonization and related soil processes. We, therefore, analyzed size and quantity of airborne testate amoebae and immigration and colonization success of airborne testate amoebae on a new land surface (experimental site "Chicken Creek", artificial post-mining water catchment). Within an altogether 91-day exposure of 70 adhesive traps, 12 species of testate amoebae were identified to be of airborne origin. Phryganella acropodia (51% of all individuals found, diameter about 35-45 mu m) and Centropyxis sphagnicola (23% of all individuals found, longest axis about 55-68 mu m), occurred most frequently in the adhesive traps. We extrapolated an aerial amoeba deposition of 61 individuals d(-1) m(-2) (living and dead individuals combined). Although it would be necessary to have a longer sequence (some additional years), our analysis of the "target substrate" of aerial immigration (catchment site) may point to a shift from a stochastic (variable) beginning of community assembly to a more deterministic (stable) course. This shift was assigned to an age of seven years of initial soil development. Although experienced specialists are necessary to conduct these time-consuming studies, the presented data suggest that terrestrial amoebae are suitable indicators for initial ecosystem development and utilization.
The influence of Pavlovian conditioned stimuli on ongoing behavior may contribute to explaining how alcohol cues stimulate drug seeking and intake. Using a Pavlovian-instrumental transfer task, we investigated the effects of alcohol-related cues on approach behavior (i.e., instrumental response behavior) and its neural correlates, and related both to the relapse after detoxification in alcohol-dependent patients. Thirty-one recently detoxified alcohol-dependent patients and 24 healthy controls underwent instrumental training, where approach or non-approach towards initially neutral stimuli was reinforced by monetary incentives. Approach behavior was tested during extinction with either alcohol-related or neutral stimuli (as Pavlovian cues) presented in the background during functional magnetic resonance imaging (fMRI). Patients were subsequently followed up for 6 months. We observed that alcohol-related background stimuli inhibited the approach behavior in detoxified alcohol-dependent patients (t = -3.86, p < .001), but not in healthy controls (t = -0.92, p = .36). This behavioral inhibition was associated with neural activation in the nucleus accumbens (NAcc) (t((30)) = 2.06, p < .05). Interestingly, both the effects were only present in subsequent abstainers, but not relapsers and in those with mild but not severe dependence. Our data show that alcohol-related cues can acquire inhibitory behavioral features typical of aversive stimuli despite being accompanied by a stronger NAcc activation, suggesting salience attribution. The fact that these findings are restricted to abstinence and milder illness suggests that they may be potential resilience factors.
In animals and humans, behavior can be influenced by irrelevant stimuli, a phenomenon called Pavlovian-to-instrumental transfer (PIT). In subjects with substance use disorder, PIT is even enhanced with functional activation in the nucleus accumbens (NAcc) and amygdala. While we observed enhanced behavioral and neural PIT effects in alcohol-dependent subjects, we here aimed to determine whether behavioral PIT is enhanced in young men with high-risk compared to low-risk drinking and subsequently related functional activation in an a-priori region of interest encompassing the NAcc and amygdala and related to polygenic risk for alcohol consumption. A representative sample of 18-year old men (n = 1937) was contacted: 445 were screened, 209 assessed: resulting in 191 valid behavioral, 139 imaging and 157 genetic datasets. None of the subjects fulfilled criteria for alcohol dependence according to the Diagnostic and Statistical Manual of Mental Disorders-IV-TextRevision (DSM-IV-TR). We measured how instrumental responding for rewards was influenced by background Pavlovian conditioned stimuli predicting action-independent rewards and losses. Behavioral PIT was enhanced in high-compared to low-risk drinkers (b = 0.09, SE = 0.03, z = 2.7, p < 0.009). Across all subjects, we observed PIT-related neural blood oxygen level-dependent (BOLD) signal in the right amygdala (t = 3.25, p(SVC) = 0.04, x = 26, y = -6, z = -12), but not in NAcc. The strength of the behavioral PIT effect was positively correlated with polygenic risk for alcohol consumption (r(s) = 0.17, p = 0.032). We conclude that behavioral PIT and polygenic risk for alcohol consumption might be a biomarker for a subclinical phenotype of risky alcohol consumption, even if no drug-related stimulus is present. The association between behavioral PIT effects and the amygdala might point to habitual processes related to out PIT task. In non-dependent young social drinkers, the amygdala rather than the NAcc is activated during PIT; possible different involvement in association with disease trajectory should be investigated in future studies.
In detoxified alcohol-dependent patients, alcohol-related stimuli can promote relapse. However, to date, the mechanisms by which contextual stimuli promote relapse have not been elucidated in detail. One hypothesis is that such contextual stimuli directly stimulate the motivation to drink via associated brain regions like the ventral striatum and thus promote alcohol seeking, intake and relapse. Pavlovian-to-Instrumental-Transfer (PIT) may be one of those behavioral phenomena contributing to relapse, capturing how Pavlovian conditioned (contextual) cues determine instrumental behavior (e.g. alcohol seeking and intake). We used a PIT paradigm during functional magnetic resonance imaging to examine the effects of classically conditioned Pavlovian stimuli on instrumental choices in n=31 detoxified patients diagnosed with alcohol dependence and n=24 healthy controls matched for age and gender. Patients were followed up over a period of 3 months. We observed that (1) there was a significant behavioral PIT effect for all participants, which was significantly more pronounced in alcohol-dependent patients; (2) PIT was significantly associated with blood oxygen level-dependent (BOLD) signals in the nucleus accumbens (NAcc) in subsequent relapsers only; and (3) PIT-related NAcc activation was associated with, and predictive of, critical outcomes (amount of alcohol intake and relapse during a 3 months follow-up period) in alcohol-dependent patients. These observations show for the first time that PIT-related BOLD signals, as a measure of the influence of Pavlovian cues on instrumental behavior, predict alcohol intake and relapse in alcohol dependence.
BACKGROUND: Addiction is supposedly characterized by a shift from goal-directed to habitual decision making, thus facilitating automatic drug intake. The two-step task allows distinguishing between these mechanisms by computationally modeling goal-directed and habitual behavior as model-based and model-free control. In addicted patients, decision making may also strongly depend upon drug-associated expectations. Therefore, we investigated model-based versus model-free decision making and its neural correlates as well as alcohol expectancies in alcohol-dependent patients and healthy controls and assessed treatment outcome in patients. METHODS: Ninety detoxified, medication-free, alcohol-dependent patients and 96 age-and gender-matched control subjects underwent functional magnetic resonance imaging during the two-step task. Alcohol expectancies were measured with the Alcohol Expectancy Questionnaire. Over a follow-up period of 48 weeks, 37 patients remained abstinent and 53 patients relapsed as indicated by the Alcohol Timeline Followback method. RESULTS: Patients who relapsed displayed reduced medial prefrontal cortex activation during model-based decision making. Furthermore, high alcohol expectancies were associated with low model-based control in relapsers, while the opposite was observed in abstainers and healthy control subjects. However, reduced model-based control per se was not associated with subsequent relapse. CONCLUSIONS: These findings suggest that poor treatment outcome in alcohol dependence does not simply result from a shift from model-based to model-free control but is instead dependent on the interaction between high drug expectancies and low model-based decision making. Reduced model-based medial prefrontal cortex signatures in those who relapse point to a neural correlate of relapse risk. These observations suggest that therapeutic interventions should target subjective alcohol expectancies.
Landscapes can be viewed as spatially heterogeneous areas encompassing terrestrial and aquatic domains. To date, most landscape carbon (C) fluxes have been estimated by accounting for terrestrial ecosystems, while aquatic ecosystems have been largely neglected. However, a robust assessment of C fluxes on the landscape scale requires the estimation of fluxes within and between both landscape components. Here, we compiled data from the literature on C fluxes across the air–water interface from various landscape components. We simulated C emissions and uptake for five different scenarios which represent a gradient of increasing spatial heterogeneity within a temperate young moraine landscape: (I) a homogeneous landscape with only cropland and large lakes; (II) separation of the terrestrial domain into cropland and forest; (III) further separation into cropland, forest, and grassland; (IV) additional division of the aquatic area into large lakes and peatlands; and (V) further separation of the aquatic area into large lakes, peatlands, running waters, and small water bodies These simulations suggest that C fluxes at the landscape scale might depend on spatial heterogeneity and landscape diversity, among other factors. When we consider spatial heterogeneity and diversity alone, small inland waters appear to play a pivotal and previously underestimated role in landscape greenhouse gas emissions that may be regarded as C hot spots. Approaches focusing on the landscape scale will also enable improved projections of ecosystems’ responses to perturbations, e.g., due to global change and anthropogenic activities, and evaluations of the specific role individual landscape components play in regional C fluxes. WIREs Water 2016, 3:601–617. doi: 10.1002/wat2.1147
The ability of water to transport and transform soil materials is one of the main drivers of soil and landscape development. In turn, soil and landscape properties determine how water is distributed in soil landscapes. Understanding the complex dynamics of this co-evolution of soils, landscapes and the hydrological system is fundamental in adapting land management to changes in climate. Soil-Landscape Evolution Models (SLEMs) are used to simulate the development and evolution of soils and landscapes. However, many hydrologic processes, such as preferential flow and subsurface lateral flow, are currently absent in these models. This limits the applicability of SLEMs to improve our understanding of feedbacks in the hydro-pedo-geomorphological system. Implementation of these hydrologic processes in SLEMs faces several complications related to calculation demands, limited methods for linking pedogenic and hydrologic processes, and limited data on quantification of changes in the hydrological system over time. In this contribution, we first briefly review processes and feedbacks in soil-landscape-hydrological systems. Next, we elaborate on the development required to include these processes in SLEMs. We discuss the state-of-the-art knowledge, identify complications, give partial solutions and suggest important future development. The main requirements for incorporating hydrologic processes in SLEMs are: (1) designing a model framework that can deal with varying timescales for different sets of processes, (2) developing and implementing methods for simulating pedogenesis as a function of water flow, (3) improving and implementing knowledge on the evolution and dynamics of soil hydraulic properties over different timescales, and (4) improving the database on temporal changes and dynamics of flow paths.
The significance of phytoliths for the control of silicon (Si) fluxes from terrestrial to aquatic ecosystems has been recognized as a key factor. Humankind actively influences Si fluxes by intensified land use, i.e., agriculture and forestry, on a global scale. We hypothesized phytolith distribution and assemblages in soils of agricultural and forestry sites to be controlled by vegetation (which is directed by land use) with direct effects on extractable Si fractions driven mainly by phytolith characteristics, i.e., dissolution status (dissolution signs) and morphology (morphotype proportions). To test our hypothesis we combined different chemical extraction methods (calcium chloride, ammonium oxalate, Tiron) for the quantification of different Si fractions (plant available Si, Si adsorbed to/occluded in pedogenic oxides/hydroxides, amorphous Si) and microscopic techniques (light microscopy, confocal laser scanning microscopy, scanning electron microscopy) for detailed analyses of phytoliths extracted using gravimetric separation (physical extraction) from exemplary loess soils of agricultural (arable land and grassland/meadow) and forestry (beech and pine) sites in Poland. We found differences in dissolution signs, morphotype proportions, and vertical distribution of phytoliths in soil horizons per site. In general, dominant morphotypes of assignable phytoliths in the studied soil profiles were elongate phytoliths and short cells, both of which are typical for grass-dominated vegetation. However, the organic layers of forest soils were dominated by globular phytoliths, which are typical indicators for mosses. As expected soil horizons under different vegetation generally were characterized by differences in extractable Si fractions, especially in the upper soil horizons. However, phytogenic Si pools counter-intuitively showed no correlations with chemically extracted Si fractions and soil pH at all. Our findings indicate that it is necessary to combine microscopic analyses and Si extraction techniques for examinations of Si cycling in biogeosystems, because extractions of Si fractions alone do not allow drawing any conclusions about phytolith characteristics or interactions between phytolith pools and chemically extractable Si fractions and do not necessarily reflect phytogenic Si pool quantities in soils and vice versa.
Silicon stable isotopes have emerged as a powerful proxy to investigate weathering because Si uptake from solution by secondary minerals or by the vegetation causes significant shifts in the isotope composition. In this study, we determined the Si isotope compositions of the principle Si pools within two small catchments located on sandstone and paragneiss, respectively, in the temperate Black Forest (Germany). At both settings, clay formation is dominated by mineral transformation preserving largely the signature of parental minerals with delta Si-30 values of around -0.7%. Bulk soils rich in primary minerals are similar to bulk parental material with delta Si-30 values close to -0.4%. Topsoils are partly different because organic matter degradation has promoted intense weathering leading to delta Si-30 values as low as -1.0%. Water samples expose highly dynamic weathering processes in the soil zone: 1) after spring snowmelt, increased release of DOC and high water fluxes trigger clay mineral dissolution which leads to delta Si-30 values down to -0.7% and 2) in course of the summer, Si uptake by the vegetation and secondary mineral formation drives dissolved Si to typical positive delta Si-30 values up to 1.1%. Groundwater with delta Si-30 values of around 0.4% records steady processes in bedrock reflecting plagioclase weathering together with kaolinite precipitation. An isotope mass balance approach reveals incongruent weathering conditions where denudation of Si is largely driven by physical erosion. Erosion of phytoliths contributes 3 to 21% to the total Si export flux, which is in the same order as the dissolved Si flux. These results elucidate the Si dynamics during weathering on catchments underlain of sedimentary origin, prevailing on the Earth surface and provide therefore valuable information to interpret the isotope signature of large river systems.
To better assess ecosystem C budgets of croplands and understand their potential response to climate and management changes, detailed information on the mechanisms and environmental controls driving the individual C flux components are needed. This accounts in particular for the ecosystem respiration (R-eco) and its components, the autotrophic (R-a) and heterotrophic respiration (R-h) which vary tremendously in time and space. This study presents a method to separate R-eco into R-a [as the sum of R-a (shoot) and R-a (root)] and R-h in order to detect temporal and small-scale spatial dynamics within their relative contribution to overall R-eco. Thus, predominant environmental drivers and underlying mechanisms can be revealed. R-eco was derived during nighttime by automatic chamber CO2 flux measurements on plant covered plots. R-h was derived from CO2 efflux measurements, which were performed in parallel to R-eco measurements on a fallow plot using CO2 sampling tubes in 10 cm soil depth. R-a (root) was calculated as the difference between sampling tube CO2 efflux measurements on a plant covered plot and R-h. R-a (shoot) was calculated as R-eco - R-a (root) - R-h. Measurements were carried out for winter wheat (Triticum aestivum L.) during the crop season 2015 at an experimental plot located in the hummocky ground moraine landscape of NE Germany. R-eco varied seasonally from < 1 to 9.5 g C m(-2) d(-1), and was higher in adult (a) and reproductive (r) than juvenile (j) stands (gC m(-2) d(-1): j = 1.2, a = 4.6, r = 5.3). Observed R-a and R-h were in general smaller compared to the independently measured R-eco, contributing in average 58% and 42% to R-eco. However, both varied strongly regarding their environmental drivers and particular contribution throughout the study period, following the seasonal development of soil temperature and moisture (R-h) as well as crop development (R-a). Thus, our results consistently revealed temporal dynamics regarding the relative contribution of R-a (root) and R-a (shoot) to R-a, as well as of R-a and R-h to R-eco. Based on the observed results, implications for partitioning of R-eco in croplands are given.
Agricultural soil landscapes of hummocky ground moraines are characterized by 3D spatial patterns of soil types that result from profile modifications due to the combined effect of water and tillage erosion. We hypothesize that crops reflect such soil landscape patterns by increased or reduced plant and root growth. Root development may depend on the thickness and vertical sequence of soil horizons as well as on the structural development state of these horizons at different landscape positions. The hypotheses were tested using field data of the root density (RD) and the root lengths (RL) of winter wheat using the minirhizotron technique. We compared data from plots at the CarboZALF-D site (NE Germany) that are representing a non-eroded reference soil profile (Albic Luvisol) at a plateau position, a strongly eroded profile at steep slope (Calcaric Regosol), and a depositional profile at the footslope (Anocolluvic Regosol). At each of these plots, three Plexiglas access tubes were installed down to approx. 1.5 m soil depth. Root measurements were carried out during the growing season of winter wheat (September 2014-August 2015) on six dates. The root length density (RLD) and the root biomass density were derived from RD values assuming a mean specific root length of 100 m g(-1). Values of RD and RLD were highest for the Anocolluvic Regosol and lowest for the Calcaric Regosol. The maximum root penetration depth was lower in the Anocolluvic Regosol because of a relatively high and fluctuating water table at this landscape position. Results revealed positive relations between below-ground (root) and above-ground crop parameters (i.e., leaf area index, plant height, biomass, and yield) for the three soil types. Observed root densities and root lengths in soils at the three landscape positions corroborated the hypothesis that the root system was reflecting erosion-induced soil profile modifications. Soil landscape position dependent root growth should be considered when attempting to quantify landscape scale water and element balances as well as agricultural productivity.
Cells and organelles are not homogeneous but include microcompartments that alter the spatiotemporal characteristics of cellular processes. The effects of microcompartmentation on metabolic pathways are however difficult to study experimentally. The pyrenoid is a microcompartment that is essential for a carbon concentrating mechanism (CCM) that improves the photosynthetic performance of eukaryotic algae. Using Chlamydomonas reinhardtii, we obtained experimental data on photosynthesis, metabolites, and proteins in CCM-induced and CCM-suppressed cells. We then employed a computational strategy to estimate how fluxes through the Calvin-Benson cycle are compartmented between the pyrenoid and the stroma. Our model predicts that ribulose-1,5-bisphosphate (RuBP), the substrate of Rubisco, and 3-phosphoglycerate (3PGA), its product, diffuse in and out of the pyrenoid, respectively, with higher fluxes in CCM-induced cells. It also indicates that there is no major diffusional barrier to metabolic flux between the pyrenoid and stroma. Our computational approach represents a stepping stone to understanding microcompartmentalized CCM in other organisms.
The dataset in the present article provides information on protozoic silicon (Si) pools represented by euglyphid testate amoebae (TA) in soils of initial and forested biogeosystems. Protozoic Si pools were calculated from densities of euglyphid TA shells and corresponding Si contents. The article also includes data on potential annual biosilicification rates of euglyphid TA at the examined sites. Furthermore, data on selected soil parameters (e.g., readily-available Si, soil pH) and site characteristics (e.g., soil groups, climate data) can be found. The data might be interesting for researchers focusing on biological processes in Si cycling in general and euglyphid TA and corresponding protozoic Si pools in particular.
Carbon (C) sequestration in soils plays a key role in the global C cycle. It is therefore crucial to adequately monitor dynamics in soil organic carbon (Delta SOC) stocks when aiming to reveal underlying processes and potential drivers. However, small-scale spatial (10-30 m) and temporal changes in SOC stocks, particularly pronounced in arable lands, are hard to assess. The main reasons for this are limitations of the well-established methods. On the one hand, repeated soil inventories, often used in long-term field trials, reveal spatial patterns and trends in Delta SOC but require a longer observation period and a sufficient number of repetitions. On the other hand, eddy covariance measurements of C fluxes towards a complete C budget of the soil-plant-atmosphere system may help to obtain temporal Delta SOC patterns but lack small-scale spatial resolution. To overcome these limitations, this study presents a reliable method to detect both short-term temporal dynamics as well as small-scale spatial differences of Delta SOC using measurements of the net ecosystem carbon balance (NECB) as a proxy. To estimate the NECB, a combination of automatic chamber (AC) measurements of CO2 exchange and empirically modeled aboveground biomass development (NPPshoot / were used. To verify our method, results were compared with Delta SOC observed by soil resampling. Soil resampling and AC measurements were performed from 2010 to 2014 at a colluvial depression located in the hummocky ground moraine landscape of northeastern Germany. The measurement site is characterized by a variable groundwater level (GWL) and pronounced small-scale spatial heterogeneity regarding SOC and nitrogen (Nt) stocks. Tendencies and magnitude of Delta SOC values derived by AC measurements and repeated soil inventories corresponded well. The period of maximum plant growth was identified as being most important for the development of spatial differences in annual Delta SOC. Hence, we were able to confirm that AC-based C budgets are able to reveal small-scale spatial differences and short-term temporal dynamics of Delta SOC.
Processes driving the production, transformation and transport of methane (CH4 / in wetland ecosystems are highly complex. We present a simple calculation algorithm to separate open-water CH4 fluxes measured with automatic chambers into diffusion-and ebullition-derived components. This helps to reveal underlying dynamics, to identify potential environmental drivers and, thus, to calculate reliable CH4 emission estimates. The flux separation is based on identification of ebullition-related sudden concentration changes during single measurements. Therefore, a variable ebullition filter is applied, using the lower and upper quartile and the interquartile range (IQR). Automation of data processing is achieved by using an established R script, adjusted for the purpose of CH4 flux calculation. The algorithm was validated by performing a laboratory experiment and tested using flux measurement data (July to September 2013) from a former fen grassland site, which converted into a shallow lake as a result of rewetting. Ebullition and diffusion contributed equally (46 and 55 %) to total CH4 emissions, which is comparable to ratios given in the literature. Moreover, the separation algorithm revealed a concealed shift in the diurnal trend of diffusive fluxes throughout the measurement period. The water temperature gradient was identified as one of the major drivers of diffusive CH4 emissions, whereas no significant driver was found in the case of erratic CH4 ebullition events.
Subsurface lateral flow in hillslope soils depends on lower permeability or texture-contrasting soil horizons. In the arable hummocky soil landscape, erosion processes caused glacial till appearance closer to the soil surface at upslope positions. The objective of this work was to quantify the potential for subsurface lateral flow depending on the erosion-affected spatial hydropedological complexity. The eroded Haplic Luvisol profile was studied due to the presence of a relatively dense C horizon that varied in depth, thickness, and sloping angle. A two-dimensional numerical modeling and sensitivity analysis for the saturated hydraulic conductivity (K-s) of the C horizon and the depth to C horizon (i.e., soil solum thickness) was performed for rainstorms in 2011 and 2012 using HYDRUS-2D. A K-s value of <2.5 cm d(-1) for the C horizon was required for lateral flow initiation. Lateral flow was (i) increasing with decreasing solum thickness, indicating an erosion-induced feedback on subsurface lateral flow, and (ii) dependent on the soil moisture regime prior to rainstorms. The effect of lateral flow on the movement of a conservative tracer was simulated in the form of a "virtual experiment". Simulation scenarios revealed only a relatively small lateral shift of the tracer plume caused by a local decoupling of water (already lateral) from subsequent tracer movement (still vertical). Longer term simulations suggested that, for the present conditions, lateral flow was limited mostly to occasional summer storm events. Even without considering preferential flow contribution to lateral flow, highly complex hydropedologic interactions are present in erosion-affected heterogeneous soil profiles.
Reconstructing rates and patterns of colluvial soil redistribution in agrarian (hummocky) landscapes
(2019)
Humans have triggered or accelerated erosion processes since prehistoric times through agricultural practices. Optically stimulated luminescence (OSL) is widely used to quantify phases and rates of the corresponding landscape change, by measuring the last moment of daylight exposure of sediments. However, natural and anthropogenic mixing processes, such as bioturbation and tillage, complicate the use of OSL as grains of different depositional ages become mixed, and grains become exposed to light even long after the depositional event of interest. Instead, OSL determines the stabilization age, indicating when sediments were buried below the active mixing zone. These stabilization ages can cause systematic underestimation when calculating deposition rates. Our focus is on colluvial deposition in a kettle hole in the Uckermark region, northeastern Germany. We took 32 samples from five locations in the colluvium filling the kettle hole to study both spatial and temporal patterns in colluviation. We combined OSL dating with advanced age modelling to determine the stabilization age of colluvial sediments. These ages were combined with an archaeological reconstruction of historical ploughing depths to derive the levels of the soil surface at the moment of stabilization; the deposition depths, which were then used to calculate unbiased deposition rates. We identified two phases of colluvial deposition. The oldest deposits (similar to 5 ka) were located at the fringe of the kettle hole and accumulated relatively slowly, whereas the youngest deposits (<0.3 ka) rapidly filled the central kettle hole with rates of two orders of magnitude higher. We suggest that the latter phase is related to artificial drainage, facilitating accessibility in the central depression for agricultural practices. Our results show the need for numerical dating techniques that take archaeological and soil-geomorphological information into account to identify spatiotemporal patterns of landscape change, and to correctly interpret landscape dynamics in anthropogenically influenced hilly landscapes. (c) 2019 The Authors. Earth Surface Processes and Landforms Published by John Wiley & Sons Ltd.
The dataset in the present article provides information on protozoic silicon (Si) pools represented by euglyphid testate amoebae (TA) in soils of initial and forested biogeosystems. Protozoic Si pools were calculated from densities of euglyphid TA shells and corresponding Si contents. The article also includes data on potential annual biosilicification rates of euglyphid TA at the examined sites. Furthermore, data on selected soil parameters (e.g., readily-available Si, soil pH) and site characteristics (e.g., soil groups, climate data) can be found. The data might be interesting for researchers focusing on biological processes in Si cycling in general and euglyphid TA and corresponding protozoic Si pools in particular.
Soil landscape research is faced with wide-ranging questions of soil erosion, precision farming, and agricultural risk management. Digital Soil Morphometrics is a powerful tool to provide respective answers or recommendations but requires soil data from the pedon-to-field scale with high horizontal and vertical resolutions, including the subsoil. We present an efficient sampling and measurement method for easily obtainable soil driving cores with low-destructive preparation. Elemental contents and soil organic and mineral matter composition were measured rapidly and in large numbers using a multi-sensor approach, i.e., visible and near infrared (Vis-NIR), diffuse reflectance infrared Fourier transform (DRIFT), and X-ray fluorescence (XRF) spectroscopy. The suitability of the approach with respect to three-dimensional soil landscape models was tested using soils along a slope representing different stages of erosion and deposition in a hummocky landscape under arable land use (Calcaric Regosols, Calcic Luvisols, Luvic Stagnosols, Gleyic-Colluvic Regosols). The combination of soil core sampling, pedological description, and three spectroscopic techniques enabled rapid determination and interpretation of horizontal and vertical spatial distributions of soil organic carbon (SOC), soil organic and mineral matter composition, as well as CaCO3, Fe, and Mn contents. Depth profiles for SOC, CaCO3, and Fe contents were suitable indicators for site-specific degrees of erosion and matter transport processes at the pedon-to-field scale. Fe and Mn profiles helped identifying zones of reductive and oxic domains in subsoils (gleyzation). Further methodical developments should implement plant-availability of nutrients, characterization of Fe oxides, and calibration of the spectroscopic techniques to field-moist samples.
Silicon (Si) is considered as a quasiessential element for higher plants as its uptake increases plant growth and resistance against abiotic as well as biotic stresses. Foliar application of fertilizers generally is assumed to be a comparably environment-friendly form of fertilization because only small quantities are needed. The interest in foliar fertilization and the use of Si as a fertilizer in general increased significantly within the last decades, but there are only few publications dealing with the foliar application of Si at all. In the present review, the effects of Si foliar fertilization, including nano-Si fertilizers, on the three most important crops on a global scale, that is, maize, rice, and wheat, are summarized. Additionally, different pathways (i.e., cuticular pathways, stomata, and trichomes) of foliar uptake and functioning of Si foliar fertilizers against biotic (i.e., fungal diseases and harmful insects), as well as abiotic (i.e., water stress, macronutrient imbalance, and heavy metal toxicity) stressors are discussed. Future research should especially focus on (1) the gathering of empirical data from field and greenhouse experiments, (2) the intensification of co-operations between practitioners and scientists, (3) interdisciplinary research, and (4) the analysis of results from multiple studies (meta-analysis, big data) to fully understand effects, uptake, and functioning of Si foliar fertilizers and to evaluate their potential in modern sustainable agriculture concepts.
Carbon (C) stored in soils represents the largest C pool of terrestrial ecosystems and consequently plays a crucial role in the global C cycle. So far, it is widely unclear to what extent different land uses and land use change influence soil C storage. The hummocky ground moraine landscape of northeastern Germany is characterized by distinct small-scale soil heterogeneity on the one hand, and intensive energy crop cultivation on the other. Both factors are assumed to significantly influence gaseous C exchange; as such, they likely drive soil organic carbon (SOC) stock dynamics in terrestrial agricultural ecosystems. To date, it is not clear to what extent N fertilization forms, which are associated with energy crop cultivation (e.g., application of biogas fermentation residues) and soil type relative to soil erosion state, influence soil C dynamics, nor is it clear whether one of these factors is more important than the other. To investigate the influence of soil erosion state and N fertilization form on soil C dynamics, we present dynamic and seasonal net ecosystem carbon balances (NECB) as a proxy for changes in soil organic carbon stocks. Measurements were conducted for maize (Zea mays L.) at five sites in the "CarboZALF-D" experimental field during the 2011 growing season. Measurement sites represent different soil erosion states (non-eroded Albic Luvisols, extremely eroded Calcaric Regosols and depositional Endogleyic Colluvic Regosols) and N fertilization forms (100% mineral fertilizer, 50% mineral and 50% organic fertilizer, and 100% organic fertilizer). Fertilization treatments were established on the Albic Luvisol. Net ecosystem CO2 exchange (NEE) and ecosystem respiration (R-eco) were measured every four weeks using a dynamic flow-through non-steady-state closed manual chamber system. Gap filling was performed based on empirical temperature and PAR dependency functions and was used to derive daily NEE values. In parallel, daily above-ground biomass production (NPFshoot) was estimated using a logistic growth equation, fitted on periodic biomass samples. Finally, C dynamics were calculated as the balance of daily NEE and NPPshoot based on the initial C input due to organic fertilization. Resulting NECB varied from pronounced soil C losses at the Endogleyic Colluvic Regosol (592 g C m(-2)) to soil C gains at the Calcaric Regosol (-124 g C m(-2)). Minor to modest C losses were observed for the Albic Luvisol. Compared to N fertilization forms, soil erosion states generally had a stronger impact on derived NECB. However, interannual variations in plant phonology and interactions between soil erosion states and fertilization forms might result in different NECB values over multiple years. Hence, long-term measurements of different fertilization treatments on characteristic soil landscape elements are needed.
Silicon is a beneficial element for many plants and is deposited in plant tissue as amorphous bio-opal called phytoliths. The biochemical processes of silicon uptake and precipitation induce isotope fractionation: the mass-dependent shift in the relative abundances of the stable isotopes of silicon. At the bulk scale, delta Si-30 ratios span from -2 to +6 parts per thousand. To further constrain these variations in situ, at the scale of individual phytolith fragments, we used femtosecond laser ablation multi-collector inductively coupled plasma-mass spectrometry (fsLA-MC-ICP-MS). A variety of phytoliths from grasses, trees and ferns were prepared from plant tissue or extracted from soil. Good agreement between phytolith delta Si-30 ratios obtained by bulk solution MC-ICP-MS analysis and in situ isotope ratios from fsLA-MC-ICP-MS validates the method. Bulk solution analyses result in at least twofold better precision for delta Si-30 (2s on reference materials <= 0.11 parts per thousand) over that found for the means of in situ analyses (2s typically <= 0.24 parts per thousand). We find that bushgrass, common reed and horsetail show large internal variations up to 2 parts per thousand in delta Si-30, reflecting the various pathways of silicon from soil to deposition. Femtosecond laser ablation provides a means to identify the underlying processes involved in the formation of phytoliths using silicon isotope ratios.
For bare soil conditions, the most important process driving and initiating splash and interrill erosion is the detachment of soil particles via raindrop impact. The kinetic energy of a rainfall event is controlled by the drop size and fall velocity distribution, which is often directly or indirectly implemented in erosion models. Therefore, numerous theoretical functions have been developed for the estimation of rainfall kinetic energy from available rainfall intensity measurements. The aim of this study is to assess differences inherent in a wide number of kinetic energy-rainfall intensity (KE-I) relations and their role in soil erosion modelling. Therefore, 32 KE-I relations are compared against measured rainfall energies based on optical distrometer measurements carried out at five stations of two substantially different rainfall regimes. These allow for continuous high-resolution (1-min) direct measurements of rainfall kinetic energies from a detailed spectrum of measured drop sizes and corresponding fall velocities. To quantify the effect of different KE-I relations on sediment delivery, we apply the erosion model WATEM/SEDEM in an experimental setup to four catchments of NE-Germany. The distrometer data shows substantial differences between measured and theoretical models of drop size and fall velocity distributions. For low intensities the number of small drops is overestimated by the Marshall and Palmer (1948; MP) drop size distribution, while for high intensities the proportion of large drops is overestimated by the MP distribution. The distrometer measurements show a considerable proportion of large drops falling at slower velocities than predicted by the Gunn and Kinzer (1949) terminal velocity model. For almost all rainfall events at all stations, the KE-I relations predicted higher cumulative kinetic energy sums compared to the direct measurements of the optical distrometers. The different KE-I relations show individual characteristics over the course of rainfall intensity levels. Our results indicate a high sensitivity (up to a range from 10 to 27 t ha(-1)) of the simulated sediment delivery related to different KE-I relations. Hence, the uncertainty associated with KE-I relations for soil erosion modelling is of critical importance.
Large-scale crop yield failures are increasingly associated with food price spikes and food insecurity and are a large source of income risk for farmers. While the evidence linking extreme weather to yield failures is clear, consensus on the broader set of weather drivers and conditions responsible for recent yield failures is lacking. We investigate this for the case of four major crops in Germany over the past 20 years using a combination of machine learning and process-based modelling. Our results confirm that years associated with widespread yield failures across crops were generally associated with severe drought, such as in 2018 and to a lesser extent 2003. However, for years with more localized yield failures and large differences in spatial patterns of yield failures between crops, no single driver or combination of drivers was identified. Relatively large residuals of unexplained variation likely indicate the importance of non-weather related factors, such as management (pest, weed and nutrient management and possible interactions with weather) explaining yield failures. Models to inform adaptation planning at farm, market or policy levels are here suggested to require consideration of cumulative resource capture and use, as well as effects of extreme events, the latter largely missing in process-based models. However, increasingly novel combinations of weather events under climate change may limit the extent to which data driven methods can replace process-based models in risk assessments.
Cells and organelles are not homogeneous but include microcompartments that alter the spatiotemporal characteristics of cellular processes. The effects of microcompartmentation on metabolic pathways are however difficult to study experimentally. The pyrenoid is a microcompartment that is essential for a carbon concentrating mechanism (CCM) that improves the photosynthetic performance of eukaryotic algae. Using Chlamydomonas reinhardtii, we obtained experimental data on photosynthesis, metabolites, and proteins in CCM-induced and CCM-suppressed cells. We then employed a computational strategy to estimate how fluxes through the Calvin-Benson cycle are compartmented between the pyrenoid and the stroma. Our model predicts that ribulose-1,5-bisphosphate (RuBP), the substrate of Rubisco, and 3-phosphoglycerate (3PGA), its product, diffuse in and out of the pyrenoid, respectively, with higher fluxes in CCM-induced cells. It also indicates that there is no major diffusional barrier to metabolic flux between the pyrenoid and stroma. Our computational approach represents a stepping stone to understanding microcompartmentalized CCM in other organisms.
Silicon (Si) is the second-most abundant element in the earth's crust. In the pedosphere, however, huge spans of Si contents occur mainly caused by Si redistribution in soil profiles and landscapes. Here, we summarize the current knowledge on the different pools and fluxes of Si in soils and terrestrial biogeosystems. Weathering and subsequent release of soluble Si may lead to (1) secondarily bound Si in newly formed Al silicates, (2) amorphous silica precipitation on surfaces of other minerals, (3) plant uptake, formation of phytogenic Si, and subsequent retranslocation to soils, (4) translocation within soil profiles and formation of new horizons, or (5) translocation out of soils (desilication). The research carried out hitherto focused on the participation of Si in weathering processes, especially in clay neoformation, buffering mechanisms for acids in soils or chemical denudation of landscapes. There are, however, only few investigations on the characteristics and controls of the low-crystalline, almost pure silica compounds formed during pedogenesis. Further, there is strong demand to improve the knowledge of (micro)biological and rhizosphere processes contributing to Si mobilization, plant uptake, and formation of phytogenic Si in plants, and release due to microbial decomposition. The contribution of the biogenic Si sources to Si redistribution within soil profiles and desilication remains unknown concerning the pools, rates, processes, and driving forces. Comprehensive studies considering soil hydrological, chemical, and biological processes as well as their interactions at the scale of pedons and landscapes are necessary to make up and model the Si balance and to couple terrestrial processes with Si cycle of limnic, fluvial, or marine biogeosystems
Precision farming needs management rules to apply spatially differentiated treatments in agricultural fields. Digital soil mapping (DSM) tools, for example apparent soil electrical conductivity, corrected to 25A degrees C (EC25), and digital elevation models, try to explain the spatial variation in soil type, soil properties (e.g. clay content), site and crop that are determined by landscape characteristics such as terrain, geology and geomorphology. We examined the use of EC25 maps to delineate management zones, and identified the main factors affecting the spatial pattern of EC25 at the regional scale in a study area in eastern Germany. Data of different types were compared: EC25 maps for 11 fields, soil properties measured in the laboratory, terrain attributes, geological maps and the description of 75 soil profiles. We identified the factors that influence EC25 in the presence of spatial autocorrelation and field-specific random effects with spatial linear mixed-effects models. The variation in EC25 could be explained to a large degree (R (2) of up to 61%). Primarily, soil organic matter and CaCO3, and secondarily clay and the presence of gleyic horizons were significantly related to EC25. Terrain attributes, however, had no significant effect on EC25. The geological map unit showed a significant relationship to EC25, and it was possible to determine the most important soil properties affecting EC25 by interpreting the geological maps. Including information on geology in precision agriculture could improve understanding of EC25 maps. The EC25 maps of fields should not be assumed to represent a map of clay content to form a basis for deriving management zones because other factors appeared to have a more important effect on EC25.
The hummocky post-glacial soil landscapes with kettle holes as internal drainage systems are characterized by ponds that trap lateral fluxes in topographic depressions. A quantitative description is mostly limited by the unknown complexity of hydraulically relevant soil and sediment structures. This paper is focussing on a structure-based approach to identify relevant field-scale flow and transport processes. Illustrative examples demonstrate extreme variations in water table fluctuation for adjoining kettle holes. Explanations require a pedohydrologic concept of the arable soil landscape. Identification of structures is based on geophysical methods and soil hydraulic measurements. Electrical resistivity imaging yields 0.5 m-scale spatial structures that correspond with soil texture distributions. Electromagnetic induction provides larger-scale field maps that reflect major soil and sediment features. Results of both methods correspond within the limits of the different spatial resolutions. With geophysical exploration methods, colluvial areas with textural differences between upper and deeper soil layers, coarse-textured sediment lenses, and stony colluvial regions around kettle holes are identified as potentially relevant flow structures. The colluvial fringe around the pond seems to be a sensitive area with important lateral exchange fluxes. Tensiometer measurements perpendicular to this boundary indicate hydraulic gradients directed from the pond towards the partially saturated soil. The localized infiltration of trapped water in kettle holes can control large fractions of ground water recharge and may have implications for the fate of agricultural chemicals in post-glacial landscapes. While surface and subsurface hydraulic structures may be inferred using minimal-invasive techniques, better understanding of processes and properties governing lateral exchange fluxes between pond and surrounding soil are required.
Content and binding forms of heavy metals, aluminium and phosphorus in bog iron ores from Poland
(2009)
Bog iron ores are widespread in Polish wetland soils used as meadows or pastures. They are suspected to contain high concentrations of heavy metals, which are precipitated together with Fe along a redox gradient. Therefore, soils with bog iron ore might be important sources for a heavy metal transfer from meadow plants into the food chain. However, this transfer depends on the different binding forms of heavy metals. The binding forms were quantified by sequential extraction analysis of heavy metals (Fe, Mn, Cr, Co, Ni, Cd, Pb) as well as Al and P on 13 representative samples of bog iron ores from central and southwestern Poland. Our results showed total contents of Cr, Co, Ni, Zn, Cd, and Pb not to exceed the natural values for sandy soils from Poland. Only the total Mn was slightly higher. The highest contents of all heavy metals have,been obtained in iron oxide fractions V (occluded in noncrystalline and poorly crystalline Fe oxides) and VI (occluded in crystalline Fe oxides). The results show a distinct relationship between the content of Fe and the quantity of Zn and Pb as well R Water soluble as well as plant available fractions were below the detection limit in most cases. From this we concluded bog iron ores not to be an actual, important source of heavy metals in the food chain. However, a remobilization of heavy metals might occur due to any reduction of iron oxides in bog iron ores, for example, by rising groundwater levels.
Soilscapes of the post-glacial morainic regions of the youngest glaciation are characterized by small hydrological kettle hole catchments forming hummocky soil landscapes. The spatial heterogeneity of subsurface structures as well as erosion-controlled pedogenesis under arable land use may complicate hydrological modeling. Our aim was to generate a soil landscape model for a small representative kettle hole catchment based on geoelectrical exploration and soil profile information. For a 1-ha catchment located in the northeastern German lowlands near the town of Prenzlau, electrical resistivity transects were determined by a multi electrode system (IMPETUS 12 Fs) and electrical conductivity (ECa) was mapped by using the electromagnetic induction (EMI) device EM38DD in both the vertical and horizontal modes. The 1-m digital elevation model (DEM) was obtained by kriging from high resolution manual elevation data determined with a leveling device (ZEISS Ni 40). Soil profile data from 26 boreholes distributed radially around the central pond were used to identify boundaries between soil horizons. The soil is characterized by varying topography and morphology of diagnostic horizons such as M- (colluvium), Bt- (clay illuviation), and C- (parent glacial till). By EMI mapping we identified (i) the boundary between erosive and colluvial areas around the kettle hole, and modeled (ii) the subsurface morphology of loamy horizons. Electrical resistivity tomography results coincide with these findings and allow for distinguishing between sandy and loamy dominated areas both in vertical and horizontal direction, respectively. This soil model of soil textural properties could be used for hydrological modeling.
Silicon (Si), although not considered essential, has beneficial effects on plant growth which are mostly associated with the ability to accumulate amorphous (phytogenic) Si, e.g., as phytoliths. Phytogenic Si is the most active Si pool in the soil-plant system because of its great surface-to-volume ratio, amorphous structure, and high water solubility. Despite the high abundance of Si in terrestrial biogeosystems and its importance, e.g., for the global C cycle, little is known about Si fluxes between soil and plants and Si pools used by plants. This study aims at elucidating the contribution of various soil Si pools to Si uptake by wheat. As pH affects dissolution of Si pools and Si uptake by plants, the effect of pH (4.5 and 7) was evaluated. Wheat was grown on Si-free pellets mixed with one of the following Si pools: quartz sand (crystalline), anorthite powder (crystalline), or silica gel (amorphous). Silicon content was measured in aboveground biomass, roots, and soil solution 4 times in intervals of 7 d. At pH 4.5, plants grew best on anorthite, but pH did not significantly affect Si-uptake rates. Total Si contents in plant biomass were significantly higher in the silica-gel treatment compared to all other treatments, with up to 26 mg g(-1) in aboveground biomass and up to 17 mg g(-1) in roots. Thus, Si uptake depends on the conversion of Si into plant-available silicic acid. This conversion occurs too slowly for crystalline Si phases, therefore Si uptake from treatments with quartz sand and anorthite did not differ from the control. For plants grown on silica gel, real Si-uptake rates were higher than the theoretical value calculated based on water transpiration. This implies that Si uptake by wheat is driven not only by passive water flux but also by active transporters, depending on Si concentration in the aqueous phase, thus on type of Si pool. These results show that Si uptake by plants as well as plant growth are significantly affected by the type of Si pool and factors controlling its solubility.
The development of theories and computational models of reading requires an understanding of processing constraints, in particular of timelines related to word recognition and oculomotor control. Timelines of word recognition are usually determined with event-related potentials (ERPs) recorded under conditions of serial visual presentation (SVP) of words; timelines of oculomotor control are derived from parameters of eye movements (EMs) during natural reading. We describe two strategies to integrate these approaches. One is to collect ERPs and EMs in separate SVP and natural reading experiments for the same experimental material (but different subjects). The other strategy is to co-register EMs and ERPs during natural reading from the same subjects. Both strategies yield data that allow us to determine how lexical properties influence ERPs (e.g., the N400 component) and EMs (e.g., fixation durations) across neighboring words. We review our recent research on the effects of frequency and predictability of words on both EM and ERP measures with reference to current models of eye-movement control during reading. Results are in support of the proposition that lexical access is distributed across several fixations and across brain-electric potentials measured on neighboring words.
The vesicle-inducing protein in plastids (VIPP1) was suggested to play a role in thylakoid membrane formation via membrane vesicles. As this functional assignment is under debate, we investigated the function of VIPP1 in Chlamydomonas reinhardtii. Using immunofluorescence, we localized VIPP1 to distinct spots within the chloroplast. In VIPP1-RNA interference/artificial microRNA cells, we consistently observed aberrant, prolamellar body-like structures at the origin of multiple thylakoid membrane layers, which appear to coincide with the immunofluorescent VIPP1 spots and suggest a defect in thylakoid membrane biogenesis. Accordingly, using quantitative shotgun proteomics, we found that unstressed vipp1 mutant cells accumulate 14 to 20% less photosystems, cytochrome b(6)f complex, and ATP synthase but 30% more light-harvesting complex II than control cells, while complex assembly, thylakoid membrane ultrastructure, and bulk lipid composition appeared unaltered. Photosystems in vipp1 mutants are sensitive to high light, which coincides with a lowered midpoint potential of the Q(A)/Q(A)(-) redox couple and increased thermosensitivity of photosystem II (PSII), suggesting structural defects in PSII. Moreover, swollen thylakoids, despite reduced membrane energization, in vipp1 mutants grown on ammonium suggest defects in the supermolecular organization of thylakoid membrane complexes. Overall, our data suggest a role of VIPP1 in the biogenesis/assembly of thylakoid membrane core complexes, most likely by supplying structural lipids.
Site-specific soil moisture and groundwater levels are key input parameters for ecological modeling. Obtaining such information in a comprehensive manner is difficult for large regions. We studied a floodplain region in the Federal State of Brandenburg, Germany, to examine the degree to which the average depth of groundwater tables can be derived from surface temperatures obtained by the ASTER radiospectrometer (spatial resolution of 90 m per pixel). A floristic ecological indicator representing the site-specific moisture level was applied to develop a proxy between the thermal satellite data and groundwater table depth. The use of spring scenes (late April to early May) from 2 years proved to be well suited for minimizing the effects of weather and land use. Vegetation surveys along transects that were 2 m wide across the pixel diagonals allowed for the calculation of average ecological moisture values of pixel-sites by applying Ellenberg-numbers. These values were used to calibrate the satellite data locally. There was a close relationship between surface temperature and the average ecological moisture value (R2 = 0.73). Average ecological moisture values were highly indicative of the average groundwater levels during a 7-year measurement series (R2 = 0.93). Satellite-supported thermal data from spring were suitable for estimating the average groundwater levels of low-lying grasslands on a larger scale. Ecological moisture values from the transect surveys effectively allowed the incorporation of relief heterogeneity within the thermal grid and the establishment of the correlation between thermal data and average groundwater table depth. Regression functions were used to produce a map of groundwater levels at the study site.
The global warming potential of nitrous oxide (N2O) and its long atmospheric lifetime mean its presence in the atmosphere is of major concern, and that methods are required to measure and reduce emissions. Large spatial and temporal variations means, however, that simple extrapolation of measured data is inappropriate, and that other methods of quantification are required. Although process-based models have been developed to simulate these emissions, they often require a large amount of input data that is not available at a regional scale, making regional and global emission estimates difficult to achieve. The spatial extent of organic soils means that quantification of emissions from these soil types is also required, but will not be achievable using a process-based model that has not been developed to simulate soil water contents above field capacity or organic soils. The ECOSSE model was developed to overcome these limitations, and with a requirement for only input data that is readily available at a regional scale, it can be used to quantify regional emissions and directly inform land-use change decisions. ECOSSE includes the major processes of nitrogen (N) turnover, with material being exchanged between pools of SOM at rates modified by temperature, soil moisture, soil pH and crop cover. Evaluation of its performance at site-scale is presented to demonstrate its ability to adequately simulate soil N contents and N2O emissions from cropland soils in Europe. Mitigation scenarios and sensitivity analyses are also presented to demonstrate how ECOSSE can be used to estimate the impact of future climate and land-use change on N2O emissions.
This study presents the first Si isotope data of the principle Si pools in soils determined by a UV femtosecond laser ablation system coupled to a multicollector inductively coupled plasma mass spectrometer (MC-ICP-MS). This method reveals accurate and precise Si isotope data on bulk materials, and at high spatial resolution, on the mineral scale. The following Si pools have been investigated: a) the Si source to soils on all major silicate minerals on thin sections from bedrock fragments in the soil profiles; b) bulk soils (particle size <2 mm) after fusion to glass beads with an iridium-strip heater or pressed into powder pellets: c) separated clay fractions as pressed powder pellets and e) separated phytoliths as pressed powder pellets. Multiple analyses of three rock standards, BHVO-2, AGV-1 and RGM-1 as fused glass beads and as pressed powder pellets, reveal delta(30)Si values within the expected range of igneous rocks. The MPI-DING reference glass KL2-G exhibits the same Si isotope composition after remelting by an iridium-strip heater showing that this technique does not alter the isotope composition of the glass.
We used this approach to investigated two immature Cambisols developed on sandstone and paragneiss in the Black Forest (Germany), respectively. Bulk soils show a largely uniform Si isotope signature for different horizons and locations, which is close to those of primary quartz and feldspar with delta(30)Si values around -0.4 parts per thousand. Soil clay formation is associated with limited Si mobility, which preserves initial Si isotope signatures of parental minerals. An exception is the organic horizon of the paragneiss catchment where intense weathering leads to a high mobility of Si and significant negative isotope signatures as low as to -1.00 parts per thousand in bulk soils. Biogenic opal in the form of phytoliths, exhibits negative Si isotope signatures of about -0.4 parts per thousand. These results demonstrate that UV femtosecond laser ablation MC-ICP-MS provides a tool to characterize the Si isotope signature of the principle Si pools left behind after weathering and Si transport have altered soils. These results can now serve as a fingerprint of the residual solids that can be used to explain the isotope composition of dissolved Si in soil solutions and river water, which is mostly enriched in the heavy isotopes.