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Floodplain soil and its bacterial composition are strongly affected by depth

  • We studied bacterial abundance and community structure of five soil cores using high-throughput sequencing of the 16S rRNA gene. Shifts in the soil bacterial composition were more pronounced within a vertical profile than across the landscape. Soil organic carbon (SOC) and nitrogen (N) concentrations decreased exponentially with soil depth and revealed a buried carbon-rich horizon between 0.8 and 1.3 m across all soil cores. This buried horizon was phylogenetically similar to its surrounding subsoils supporting the idea that the type of carbon, not necessarily the amount of carbon was driving the apparent similarities. In contrast to other studies, Nitrospirae was one of our major phyla with relatively high abundances throughout the soil profile except for the surface soil. Although depth is the major driver shaping soil bacterial community structure, positive correlations with SOC and N concentrations, however, were revealed with the bacterial abundance of Acidobacteria, one of the major, and Gemmatimonadetes, one of the minor phylaWe studied bacterial abundance and community structure of five soil cores using high-throughput sequencing of the 16S rRNA gene. Shifts in the soil bacterial composition were more pronounced within a vertical profile than across the landscape. Soil organic carbon (SOC) and nitrogen (N) concentrations decreased exponentially with soil depth and revealed a buried carbon-rich horizon between 0.8 and 1.3 m across all soil cores. This buried horizon was phylogenetically similar to its surrounding subsoils supporting the idea that the type of carbon, not necessarily the amount of carbon was driving the apparent similarities. In contrast to other studies, Nitrospirae was one of our major phyla with relatively high abundances throughout the soil profile except for the surface soil. Although depth is the major driver shaping soil bacterial community structure, positive correlations with SOC and N concentrations, however, were revealed with the bacterial abundance of Acidobacteria, one of the major, and Gemmatimonadetes, one of the minor phyla in our study. Our study showed that bacterial diversity in soils below 2.0 m can be still as high if not higher than in the above laying subsurface soil suggesting that various bacteria throughout the soil profile influence major biogeochemical processes in floodplain soils.show moreshow less

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Author details:Kristin StegerORCiD, Amy Taeyen Kim, Lars GanzertORCiD, Hans-Peter GrossartORCiDGND, David R. Smart
DOI:https://doi.org/10.1093/femsec/fiz014
ISSN:0168-6496
ISSN:1574-6941
Pubmed ID:https://pubmed.ncbi.nlm.nih.gov/30690447
Title of parent work (English):FEMS microbiology ecology
Publisher:Oxford Univ. Press
Place of publishing:Oxford
Publication type:Article
Language:English
Date of first publication:2019/01/24
Publication year:2019
Release date:2021/03/18
Tag:16S rRNA gene sequencing; Nitrospirae; SOC; alluvial soil; buried horizon; soil bacterial diversity
Volume:95
Issue:3
Number of pages:11
Funding institution:German Science FoundationGerman Research Foundation (DFG) [GR 1540/23-1]; project Mycolink - Leibniz Association; The Nature Conservancy [E1120001]; State of California Department of Fish and Wildlife [E1120001]; University of California (UC) Office of the Water, the University of California Water Security and Sustainability Research Initiative [MR-15-328473]
Organizational units:Mathematisch-Naturwissenschaftliche Fakultät / Institut für Biochemie und Biologie
DDC classification:5 Naturwissenschaften und Mathematik / 55 Geowissenschaften, Geologie / 550 Geowissenschaften
Peer review:Referiert
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