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Conformational and Phase Transitions in DNA-Photosensitive Surfactant Solutions: Experiment and Modeling

  • DNA binding to trans- and cis-isomers of azobenzene containing cationic surfactant in 5 mM NaCl solution was investigated by the methods of dynamic light scattering (DLS), low-gradient viscometry (LGV), atomic force microscopy (AFM), circular dichroism (CD), gel electrophoresis (GE), flow birefringence (FB), UV-Vis spectrophotometry. Light-responsive conformational transitions of DNA in complex with photosensitive surfactant, changes in DNA optical anisotropy and persistent length, phase transition of DNA into nanoparticles induced by high surfactant concentration, as well as transformation of surfactant conformation under its binding to macromolecule were studied. Computer simulations of micelles formation for cis- and trans-isomers of azobenzene containing surfactant, as well as DNA-surfactant interaction, were carried out. Phase diagram for DNA-surfactant solutions was designed. The possibility to reverse the DNA packaging induced by surfactant binding with the dilution and light irradiation was shown. (c) 2014 Wiley Periodicals,DNA binding to trans- and cis-isomers of azobenzene containing cationic surfactant in 5 mM NaCl solution was investigated by the methods of dynamic light scattering (DLS), low-gradient viscometry (LGV), atomic force microscopy (AFM), circular dichroism (CD), gel electrophoresis (GE), flow birefringence (FB), UV-Vis spectrophotometry. Light-responsive conformational transitions of DNA in complex with photosensitive surfactant, changes in DNA optical anisotropy and persistent length, phase transition of DNA into nanoparticles induced by high surfactant concentration, as well as transformation of surfactant conformation under its binding to macromolecule were studied. Computer simulations of micelles formation for cis- and trans-isomers of azobenzene containing surfactant, as well as DNA-surfactant interaction, were carried out. Phase diagram for DNA-surfactant solutions was designed. The possibility to reverse the DNA packaging induced by surfactant binding with the dilution and light irradiation was shown. (c) 2014 Wiley Periodicals, Inc. Biopolymers 103: 109-122, 2015.zeige mehrzeige weniger

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Metadaten
Verfasserangaben:Nina Kasyanenko, Liudmila LysyakovaORCiDGND, Ruslan Ramazanov, Alexey Nesterenko, Igor Yaroshevich, Evgenii TitovORCiDGND, G. Alexeev, Andrey Lezov, I. Unksov
DOI:https://doi.org/10.1002/bip.22575
ISSN:0006-3525
ISSN:1097-0282
Pubmed ID:https://pubmed.ncbi.nlm.nih.gov/25302479
Titel des übergeordneten Werks (Englisch):Biopolymers
Verlag:Wiley-Blackwell
Verlagsort:Hoboken
Publikationstyp:Wissenschaftlicher Artikel
Sprache:Englisch
Jahr der Erstveröffentlichung:2015
Erscheinungsjahr:2015
Datum der Freischaltung:27.03.2017
Freies Schlagwort / Tag:DNA volume and persistent length; DNA-surfactant complexes; light-induced DNA de-compaction; phase diagram
Band:103
Ausgabe:2
Seitenanzahl:14
Erste Seite:109
Letzte Seite:122
Fördernde Institution:RFBR, G-RISC, DAAD [13-03-01192 a]; Saint Petersburg State University [11.38.644.2013, 11.50.1589.2013, 11.38.267.2014]
Organisationseinheiten:Mathematisch-Naturwissenschaftliche Fakultät / Institut für Physik und Astronomie
Peer Review:Referiert
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