570 Biowissenschaften; Biologie
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- Nitrogen deposition (2)
- Northern Asia (2)
- Norway (2)
- Nostoc punctiforme (2)
- NutriAct Family Study (2)
- Nutrition (2)
- O-antigen (2)
- O-serotyping (2)
- OMICs tools (2)
- Offspring weight (2)
- Ohrid-Prespa region (2)
- Older adults (2)
- Organogenesis (2)
- Orthologous Matrix (OMA) Project (2)
- Outcrossing (2)
- Outcrossing rate (2)
- Outdoor enclosure (2)
- PBPK (2)
- PC-3 cells (2)
- PEI coating (2)
- PKS (2)
- PUFA (2)
- Palaeogenetics (2)
- Paläoökologie (2)
- Parasit (2)
- Parasitoid wasp (2)
- Partial Little Square (2)
- Partnership (2)
- Paternity analysis (2)
- Pathway design (2)
- Periphyton (2)
- Personality (2)
- Pex1 (2)
- Pex6 (2)
- Pflanze (2)
- Pflanzengemeinschaften (2)
- Pflanzenwachstum (2)
- Pflanzenökologie (2)
- Phase variation (2)
- Phosphat (2)
- Photosynthesis (2)
- Phylogenetics (2)
- Phylogenie (2)
- Phylogenomics (2)
- Pichia pastoris (2)
- Pipistrellus nathusii (2)
- Plankton (2)
- Plant community model (2)
- Plant development (2)
- Plant-soil feedback (2)
- Plants (2)
- Plasma membrane (2)
- Poecilia formosa (2)
- Poecilia latipinna (2)
- Polyadenylierung (2)
- Polyelektrolyt-Multischichten (2)
- Polysaccharide (2)
- Population dynamics (2)
- Predator-prey interactions (2)
- Pregnancy (2)
- Priming (2)
- Promiscuous enzymes (2)
- Protein (2)
- Proteinaggregation (2)
- Proteins (2)
- Pseudomonas aeruginosa (2)
- Pseudomonas syringae (2)
- Puumala virus seroprevalence (2)
- QDs (2)
- QTL mapping (2)
- R Shiny (2)
- RNA (2)
- RNA interference (2)
- RNA virus (2)
- RNA-guided Cas9 (2)
- RUNX2 (2)
- Randomized-controlled trial (2)
- Raphidiopsis (2)
- Recombination (2)
- Redox marker (2)
- Redoxreaktion (2)
- Rhizophagus irregularis (2)
- Rice (2)
- Riesenvesikel (2)
- Rodent (2)
- Roridula gorgonias (2)
- Rotifera (2)
- RpoS (2)
- RubisCO (2)
- Russia (2)
- S-XRF (2)
- SELEX (2)
- SERS enhancement factor (2)
- SFON (2)
- SIMS techniques (2)
- SPB (2)
- SWL (2)
- Saccharomyces cerevisiae (2)
- Sailfin molly (2)
- Salmonella (2)
- Salmonella Typhimurium (2)
- Saprolegnia (2)
- Saprolegniaceae (2)
- Savannas (2)
- Savanne (2)
- Schwefel (2)
- Scopoletin (2)
- Seasonality (2)
- Sediment (2)
- Senescence (2)
- Sequenzierung der nächsten Generation (2)
- Serine cycle (2)
- Sexual selection (2)
- Siberian tree line (2)
- Sibirien (2)
- Simulation (2)
- Smpd1 (2)
- Soil function (2)
- Solanaceae (2)
- Solanum lycopersicum (2)
- Solanum tuberosum (2)
- Space use (2)
- Specific wood density (2)
- Statistical Physics (2)
- Strategic growth adjustment (2)
- Stress (2)
- Sundaland (2)
- Sus scrofa (2)
- Systems Biology (2)
- Säugetiere (2)
- TEM (2)
- TMS (2)
- TTR (2)
- Tailspike protein (2)
- Tanzania (2)
- Temperate forest (2)
- Tenebrio molitor larvae (2)
- Toll and Imd pathways (2)
- Tomato (2)
- Transcription factors (2)
- Transcriptional memory (2)
- Transcriptome assembly (2)
- Transporters (2)
- Tree allometry (2)
- Turkey (2)
- TusA (2)
- Type 2 Diabetes (2)
- UV radiation (2)
- Ulcerative colitis (2)
- Urbanization (2)
- Ursus arctos (2)
- Venom proteins (2)
- Verkhoyansk mountains (2)
- Virus (2)
- Walker A motif (2)
- Wastewater (2)
- Weakly electric fish (2)
- Weißstorch (2)
- Wildschwein (2)
- Wind (2)
- Wood specific gravity (2)
- Woody aboveground biomass (2)
- X-ray structure (2)
- XMRV (2)
- Xpr1 (2)
- Yap1/Wwtr1 (Taz) (2)
- Zebrafish (2)
- Zellweger (2)
- Zellweger syndrome spectrum disorder (ZSSD) (2)
- Zinypr-1 (2)
- Zytoskelett (2)
- aberrations (2)
- accelerometer (2)
- acclimation (2)
- acid mine drainage (2)
- acoustic communication (2)
- actin polymerization (2)
- activated carbon (2)
- activator–inhibitor models (2)
- adaptive introgression (2)
- adaptive processes (2)
- adaptive radiation (2)
- adiponectin (2)
- adiposity (2)
- age (2)
- agricultural landscape (2)
- agrin (2)
- agro-infiltration (2)
- agroecology (2)
- aldehyde oxidoreductase (2)
- alignment (2)
- alignment sensitivity / specificity (2)
- alkylphospholipids (2)
- all-cause mortality (2)
- allocation (2)
- alphaherpesvirus (2)
- alternative splicing (2)
- amino acid (2)
- amino acids (2)
- amphibians (2)
- animal cognition (2)
- animal migration (2)
- anthropogenic environment (2)
- anthropogenic food subsidies (2)
- anthropometric measures (2)
- anti-oxidative response (2)
- antibody producing cell selection (2)
- antioxidant capacity (2)
- anxiety-like behavior (2)
- aphids (2)
- apis mellifera (2)
- apple (2)
- aquatic ecosystems (2)
- aqueous dispersion (2)
- aqueous-solution (2)
- arable land (2)
- arable weeds (2)
- arbuscular mycorrhizal symbiosis (2)
- archival DNA (2)
- area-based conservation (2)
- arsenic (2)
- arthropod (2)
- artificial light at night (ALAN) (2)
- ascorbate peroxidase (2)
- assembly (2)
- assembly processes (2)
- assembly rules (2)
- atomic force microscopy (2)
- autocorrelation (2)
- automated radio telemetry (2)
- axillary bud (2)
- baltic sea (2)
- basal body (2)
- base excision repair (incision activity) (2)
- bat fatalities (2)
- behavioral plasticity (2)
- behavioral type (2)
- behaviour (2)
- behavioural syndrome (2)
- beta diversity (2)
- bias (2)
- bifurcation (2)
- bifurcation theory (2)
- biodiversity conservation (2)
- biodiversity decline (2)
- biodiversity exploratories (2)
- biodiversity facets (2)
- biofortification (2)
- biogenic amine (2)
- biological age (2)
- biological control (2)
- biological invasions (2)
- biological soil crusts (2)
- biomarker detection (2)
- biomaterials (2)
- biophysics (2)
- biosignatures (2)
- biostimulant (2)
- biosynthesis (2)
- biotic filtering (2)
- biotin sulfoxide reductase (2)
- bird migration (2)
- bisphosphonates (2)
- body composition (2)
- body proportions (2)
- bone mineral density (2)
- bone pathologies (2)
- brackish waters (2)
- brain insulin signaling (2)
- branched chain amino acids (2)
- branching (2)
- breeding (2)
- buffer zones (2)
- bush encroachment (2)
- cTBS (2)
- cadmium-free (2)
- caffeine (2)
- calcination (2)
- calcite (2)
- calcium (2)
- calcium carbonate inclusions (2)
- calcium influx (2)
- canalization (2)
- cancer epidemiology (2)
- capture enrichment (2)
- carbon dots (2)
- carbon isotopes (2)
- carbon labeling (2)
- cardiac development (2)
- cardiomyocyte (2)
- cardiomyogenic differentiation (2)
- carotenoid biosynthesis (2)
- carrion ecology (2)
- cascading effects (2)
- catalase (2)
- cave fish (2)
- cell shape (2)
- cells (2)
- cellular bioenergetics (2)
- cellular bioimaging (2)
- cellular signalling (2)
- cellulose polymeric organic matter (2)
- cerami-des (2)
- ceramides (2)
- cereal leaf beetle (2)
- cereal meals (2)
- child growth (2)
- chimeric transcription factors (2)
- chlamydomonas (2)
- chlorophyll a (2)
- chloroplast (2)
- chronic diseases (2)
- chytridiomycota (2)
- cis-regulatory evolution (2)
- climate adaptation (2)
- climate dynamics (2)
- climate extremes (2)
- climate warming (2)
- co-expression (2)
- co-limitation (2)
- codon usage (2)
- coefficient (2)
- coffee by-products (2)
- cold stress (2)
- collagen (2)
- colony viability (2)
- common‐garden experiment (2)
- community composition (2)
- community model (2)
- community structure (2)
- community theory (2)
- competition–defense trade‐off (2)
- comprehensive analysis (2)
- concepts (2)
- confocal microscopy (2)
- conformational change (2)
- conformational rearrangement (2)
- congeneric species (2)
- conscripts (2)
- constitutive activity (2)
- constraint-based modeling (2)
- converting factor (2)
- copper complex (2)
- copper(II) (2)
- copper-related disorders (2)
- cord blood (2)
- core shell UCNP (2)
- cori cycle (2)
- cortisol (2)
- counting (2)
- coviability analysis (2)
- crop diversity (2)
- cropping system (2)
- cross-species capture (2)
- cryolithology (2)
- cryptomycota (2)
- cyanobacterial bloom (2)
- cyanobacterial sucrose-phosphatase (2)
- cyclic AMP (2)
- cytochrome c (2)
- cytoplasmic polyadenylation (2)
- cytosine methylation (2)
- cytosolic tRNA thiolation (2)
- cytotoxicity (2)
- dark virus (2)
- data integration (2)
- ddRAD (2)
- de novo genome assembly (2)
- dead Cas9 (2)
- decline (2)
- defense against predation (2)
- defensive symbiosis (2)
- degraded DNA (2)
- dehydration (2)
- demographic noise (2)
- depressive-like behavior (2)
- design of experiment (2)
- developing brain (2)
- developmental canalization (2)
- developmental dyslexia (2)
- developmental plasticity (2)
- diacylglycerol (2)
- dietary patterns (2)
- dietary restriction (2)
- differential expression analysis (2)
- digestive enzymes quantification (2)
- dimerization of 4-nitrothiophenol (2)
- dispersal filtering (2)
- diversity profiles (2)
- dominance effect (2)
- droughts (2)
- drug delivery (2)
- drug metabolism (2)
- drug release (2)
- dynamic equilibrium (2)
- eastern continental Asia (2)
- eavesdropping (2)
- echolocation (2)
- ecophysiology (2)
- ecosystem services provisioning (2)
- effectors (2)
- egg ratio (2)
- eicosapentaenoic acid (2)
- electric fish (2)
- electroencephalography (EEG) (2)
- electronic tool integration (2)
- emotional imagery (2)
- emotions (2)
- endocardium (2)
- endotoxin (2)
- energy expenditure (2)
- enrichment experiments (2)
- entropy (2)
- environmental DNA (2)
- environmental genomics (2)
- environmental noise (2)
- enzymology (2)
- epidemiology (2)
- epigenetic variation (2)
- epiphytes (2)
- epithionitrile (2)
- epitope prediction (2)
- epizoochory (2)
- equalizing and stabilizing mechanisms (2)
- error reduction (2)
- establishment (2)
- event coincidence analysis (2)
- evolutionary ecology (2)
- evolutionary rescue (2)
- exploitation (2)
- expression profile (2)
- extinction (2)
- extinction drivers (2)
- extra-cytoplasmic pockets (2)
- extracellular DNA (2)
- extracellular enzymes (2)
- extracellular matrix (2)
- extracellular signaling (2)
- eye-tracking (2)
- facilitation (2)
- fasciation (2)
- fatty acid changes (2)
- feeding (2)
- feeding behaviour (2)
- fence interaction (2)
- fertilization (2)
- fetal origins hypothesis (2)
- fisheries (2)
- fitness gradient (2)
- fitness response (2)
- floating mat (2)
- flooded grasslands (2)
- floral scent (2)
- fluorescent probe (2)
- food frequency questionnaire (2)
- food web dynamics (2)
- food webs (2)
- forage availability (2)
- forage gaps (2)
- foraging (2)
- foraging behaviour (2)
- forebrain (2)
- forest management (2)
- forestREplot (2)
- formaldehyde assimilation (2)
- formate dehydrogenase (2)
- fractionation (2)
- fractionation factors (2)
- free zinc (2)
- freshwater algae (2)
- freshwater heterotrophic bacteria (2)
- functional complementation (2)
- functional inhibitors of acid sphin-gomyelinase (2)
- functional response (2)
- functional richness (2)
- fungal diversity (2)
- fungal pathogens (2)
- funktionelle Diversität (2)
- gamma diversity (2)
- gas-production (2)
- gene delivery (2)
- gene regulation (2)
- generalized dissimilarity modelling (2)
- genetic accommodation (2)
- genetic adaptation (2)
- genetic rescue (2)
- genetic screen (2)
- genetischer Screen (2)
- genome (2)
- genome scan (2)
- genomic prediction (2)
- geo-bio interaction (2)
- geographic distribution (2)
- glacial maximum (2)
- global and regional change (2)
- glucocorticoid receptor (2)
- glucose (2)
- glucosinolate hydrolysis (2)
- glutathione (2)
- glutathione peroxidase (2)
- glycine cleavage system (2)
- governance (2)
- grazing (2)
- gross primary production (2)
- groundwater (2)
- groundwater recharge (2)
- growth behavior (2)
- growth restriction (2)
- guard cell (2)
- gwas (2)
- habitat (2)
- habitat use (2)
- habituation (2)
- hantavirus (2)
- heart regeneration (2)
- heat (2)
- heat shock protein (2)
- heliozoa (2)
- hepcidin-25 (2)
- hilly loes plateau (2)
- histone modification (2)
- holding capability (2)
- holding isometric muscle action (HIMA) (2)
- holocene (2)
- hoverflies (2)
- human aldehyde oxidase (2)
- human endotoxemia (2)
- human excised skin (2)
- human introduction (2)
- human-wildlife conflict (2)
- hybridoma (2)
- hydrogels (2)
- hyena (2)
- hyperoxia (2)
- hypertension (2)
- hyperthermia (2)
- hypoxia (2)
- identification (2)
- immunoassay (2)
- immunogenicity (2)
- in silico (2)
- in vitro intestinal model (2)
- in-vitro-synthesis (2)
- inbreeding depression (2)
- indirect facilitation (2)
- individual based modeling (2)
- individual-based modeling (2)
- individual-based modelling (2)
- inducible defense (2)
- infancy (2)
- infiltration (2)
- influenza A virus (2)
- inhibition (2)
- inner-mongolia (2)
- insects (2)
- integrated assessments (2)
- inter-brain synchronization (2)
- inter-muscle-brain synchronization (2)
- interpersonal muscle action (2)
- interspecific interactions (2)
- intestinal mucins (2)
- intestinal zinc resorption (2)
- intra-organ-communication (2)
- intraguild predation (2)
- intraspecific variation (2)
- invasibility (2)
- invasion success (2)
- invasive species (2)
- ion mobility spectrometry (2)
- ion-exchange chromatography (2)
- ionic liquid (2)
- ionic strength (2)
- ionogel (2)
- iron (2)
- iron-sulfur clusters (2)
- island biogeography (2)
- island disharmony (2)
- island syndromes (2)
- islands (2)
- isomerization (2)
- jasmonate (2)
- kelp (2)
- l-cysteine desulfurase (2)
- lake monitoring (2)
- lake periphyton (2)
- land sharing vs. land sparing (2)
- land use change (2)
- land-use change (2)
- landscape diversity (2)
- landscape generator (2)
- landscape homogenization (2)
- late pleistocene (2)
- later health (2)
- lichens (2)
- life cycle (2)
- life‐history traits (2)
- ligand exchange (2)
- light adaptation (2)
- light variability (2)
- limits (2)
- lipid classes (2)
- lipid limitation thresholds (2)
- lipid membranes (2)
- lipidomics (2)
- lipid–lipid interactions (2)
- lipoplexes (2)
- loci (2)
- lokale Anpassung (2)
- longitudinal (2)
- low-energy electrons (2)
- luminescence (2)
- lysosomal hydrolases (2)
- lysosomal storage disorders (2)
- lysosome (2)
- mRNA degradation (2)
- magnitude estimation (2)
- maintenance (2)
- maintenance of functional diversity (2)
- maintenance of genomic integrity (2)
- major histocompatibility complex (2)
- male Daphnia (2)
- maltooligosaccharides (2)
- mammalian-cells (2)
- manganese (2)
- manual muscle test (2)
- many-to-one genotype–phenotype map (2)
- mass conservation (2)
- mass index (2)
- mate-pairs (2)
- mathematical modelling (2)
- mathematical precursor (2)
- maturation (2)
- meal timing (2)
- mechanical (2)
- mechanical strength (2)
- mechanisms (2)
- mechanomyography (MMG) (2)
- mediated delivery (2)
- membrane biophysics (2)
- membrane fluidity (2)
- membrane fusion (2)
- membrane microdomains (2)
- membrane protein (2)
- membrane stabilization (2)
- memory (2)
- mercaptocarboxylic acids (2)
- mesenchymal stem cells (2)
- mesophyll cell (2)
- messenger-rna polyadenylation (2)
- meta-analysis (2)
- metabolic regulation (2)
- metabolic syndrome (2)
- metabolic-profiling (2)
- metabolische Netzwerke (2)
- metagenomic analysis (2)
- metagenomics 2.0 (2)
- metal complex (2)
- metal peptide (2)
- metallopeptide (2)
- metalloprotein (2)
- methane (2)
- methane oxidation (2)
- methylotrophy (2)
- microarrays (2)
- microbial activity (2)
- microbial communities (2)
- microbiota (2)
- microclimate (2)
- microcomputed tomography (2)
- microeukaryotes (2)
- microfluidics (2)
- microstructure (2)
- microtubule-organization (2)
- mining lakes (2)
- mitochondrial genome (mtDNA) (2)
- mitogenomes (2)
- mixed cultures (2)
- model (2)
- model integration (2)
- model limitations (2)
- models (2)
- modern coexistence theory (2)
- mojave desert (2)
- molecular dynamics simulations (2)
- molecular evolution (2)
- molecular species identification (2)
- molybdoenzyme (2)
- molybdopterin synthase (2)
- morphology (2)
- mouse (2)
- movement speed (2)
- mowing (2)
- mucus layer (2)
- multidrug resistance (2)
- multiple sclerosis (2)
- multishell (2)
- multivalence (2)
- multi‐ year flooding cycle (2)
- musicality (2)
- mutagenesis (2)
- mutation (2)
- mutual information (2)
- myocardial infarction (2)
- myocardium (2)
- myoglobin (2)
- n-alkanes (2)
- n-oxide reductase (2)
- nachhaltige Landnutzung (2)
- nanoelectrodes (2)
- nanogels (2)
- native American ancestry (2)
- nature conservation (2)
- necrobiome (2)
- neophilia (2)
- neophobia (2)
- net primary productivity (2)
- network analysis (2)
- network reconstruction (2)
- neurodegeneration (2)
- neurodegenerative diseases (2)
- neuroendocrine (2)
- neuromuscular adaptation (2)
- niche and fitness differences (2)
- niche width (2)
- nickel (2)
- nitrile (2)
- nitrogen fixation (2)
- nitrogen limitation (2)
- nitrous-oxide (2)
- noise color (2)
- non-linear dynamics (2)
- nonlinear waves (2)
- nuclear pore complex (2)
- nucleolus (2)
- nucleoporins (2)
- nucleus-associated body (2)
- number knowledge (2)
- nutrient (2)
- nutrient availability (2)
- nutrient cycling (2)
- nutrient spike (2)
- nutrient transport (2)
- octopamine (2)
- odd chain fatty acids (2)
- oil palm (2)
- omics (2)
- ontogeny (2)
- ordinary differential equation (2)
- organ size (2)
- organic compounds adsorption (2)
- organic matter (2)
- organic–inorganic hybrid (2)
- organisches Material (2)
- osmotic-pressure (2)
- osteoporosis (2)
- other-race effect (2)
- outbreeding depression (2)
- overhunting (2)
- overweight (2)
- oxidase (2)
- oxidative stress tolerance (2)
- pH (2)
- pace-of-life syndrome (2)
- paleoenvironmental records (2)
- parameter estimation (2)
- parameters (2)
- paraquat (2)
- parasites (2)
- parasitoid (2)
- parchment (2)
- parentage (2)
- partial correlation (2)
- participatory research (2)
- pathogens (2)
- pathway engineering (2)
- pattern formation (2)
- performance (2)
- perialpine lakes (2)
- periphyton (2)
- periplasmic nitrate reductase (2)
- phagocytosis (2)
- phase transfer (2)
- phenotypic phase plane (2)
- phloem (2)
- phloem proteins (2)
- phonotaxis (2)
- phosphate (2)
- phosphatidylserine (2)
- phosphoglucan (2)
- photoresponse (2)
- physical and physiological dormancy (2)
- physiology (2)
- phytoplankton host (2)
- plant Mediator (2)
- plant adaptation (2)
- plant clonality (2)
- plant ecology (2)
- plant invasion (2)
- plant macro-fossils (2)
- plant macrofossil data (2)
- plant naturalization (2)
- plant strategies (2)
- plant–soil feedback (2)
- plasma measurements (2)
- plastic-associated biofilms (2)
- plastid transformation (2)
- plastidial phosphorylase (2)
- platelets (2)
- playback (2)
- pleasant and unpleasant imagery (2)
- polarization (2)
- poly(ADP-ribosyl)ation (2)
- poly(a)-binding protein (2)
- polyadenylation (2)
- polyamide (2)
- polyethylene (2)
- polymer degradation (2)
- polyphenols (2)
- polysulfide (2)
- population delimitation (2)
- population genetics (2)
- population viability analysis (2)
- population-specific risk marker (2)
- positive selection (2)
- postglacial recolonization (2)
- potential-functions (2)
- pre-school (2)
- preadaptation (2)
- precuneus (2)
- predator (2)
- predator–prey cycles (2)
- pregnancy (2)
- preterm infants (2)
- primary metabolism (2)
- prior knowledge (2)
- probiotics (2)
- production (2)
- progenitor cells (2)
- proline (2)
- promiscuous (2)
- properties (2)
- prostaglandin E2 (2)
- protein aggregation (2)
- protein restriction (2)
- protein-carbohydrate interactions (2)
- protein-protein interaction (2)
- proteostasis (2)
- provitamin A (2)
- psychosocial stress (2)
- pubertal timing (2)
- public health (2)
- pulse perturbation (2)
- purifying selection (2)
- purity (2)
- pushing isometric muscle action (PIMA) (2)
- pyridoxal-50-phosphate (2)
- pyruvate (2)
- quality (2)
- quantification (2)
- quantum dots (2)
- questioning solutions (2)
- racemization (2)
- radiocarbon (2)
- radiocarbon dating (2)
- rain event depth (2)
- random forest (2)
- range size (2)
- rat (2)
- reaction norms (2)
- reciprocal transplant experiment (2)
- recombinant inbred line population (2)
- redfield ratio (2)
- redox (2)
- redox polymer (2)
- reference material (2)
- regime shift (2)
- regulate gene expression (2)
- reliability (2)
- repetition (2)
- repetitive elements (2)
- reproducibility (2)
- reserve design (2)
- resistin (2)
- resonance energy transfer (2)
- resource-tracking (2)
- respiration (2)
- responses (2)
- reveals (2)
- reversed-phase chromatography (2)
- reversible shape-memory actuator (2)
- rhizopods (2)
- rhodobacter-capsulatus (2)
- rhythm perception (2)
- rhythmic grouping (2)
- risk management cycle (2)
- robustness (2)
- rodent (2)
- rooting depth (2)
- salicylic-acid (2)
- saliva (2)
- sarcopenia (2)
- scaffolding (2)
- scale-dependency (2)
- scaled mass index (2)
- scaling (2)
- school mathematics (2)
- seawater (2)
- secondary metabolites (2)
- secular changes (2)
- seed mass (2)
- selection (2)
- selenium (2)
- selenoneine (2)
- selfing syndrome (2)
- semi-closed mitosis (2)
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We previously showed that purified 1-methoxy-3-indolylmethyl (1-MIM) glucosinolate, a secondary plant metabolite in Brassica species, is mutagenic in various in vitro systems and forms DNA and protein adducts in mouse models. In the present study, we administered 1-MIM glucosinolate in a natural matrix to mice, by feeding a diet containing pak choi powder and extract. Groups of animals were killed after 1, 2, 4 and 8 days of pak choi diet, directly or, in the case of the 8-day treatment, after 0, 8 and 16 days of recovery with pak choi-free diet. DNA adducts [N-2-(1-MIM)-dG, N-6-(1-MIM)-dA] in six tissues, as well as protein adducts [tau N-(1-MIM)-His] in serum albumin (SA) and hemoglobin (Hb) were determined using UPLC-MS/MS with isotopically labeled internal standards. None of the samples from the 12 control animals under standard diet contained any 1-MIM adducts. All groups receiving pak choi diet showed DNA adducts in all six tissues (exception: lung of mice treated for a single day) as well as SA and Hb adducts. During the feeding period, all adduct levels continuously increased until day 8 (in the jejunum until day 4). During the 14-day recovery period, N-2-(1-MIM)-dG in liver, kidney, lung, jejunum, cecum and colon decreased to 52, 41, 59, 11, 7 and 2%, respectively, of the peak level. The time course of N-6-(1-MIM)-dA was similar. Immunohistochemical analyses indicated that cell turnover is a major mechanism of DNA adduct elimination in the intestine. In the same recovery period, protein adducts decreased more rapidly in SA than in Hb, to 0.7 and 37%, respectively, of the peak level, consistent with the differential turnover of these proteins. In conclusion, the pak choi diet lead to the formation of high levels of adducts in mice. Cell and protein turnover was a major mechanism of adduct elimination, at least in gut and blood.
A bacterial effector counteracts host autophagy by promoting degradation of an autophagy component
(2022)
Beyond its role in cellular homeostasis, autophagy plays anti- and promicrobial roles in host-microbe interactions, both in animals and plants.
One prominent role of antimicrobial autophagy is to degrade intracellular pathogens or microbial molecules, in a process termed xenophagy.
Consequently, microbes evolved mechanisms to hijack or modulate autophagy to escape elimination.
Although well-described in animals, the extent to which xenophagy contributes to plant-bacteria interactions remains unknown.
Here, we provide evidence that Xanthomonas campestris pv. vesicatoria (Xcv) suppresses host autophagy by utilizing type-III effector XopL. XopL interacts with and degrades the autophagy component SH3P2 via its E3 ligase activity to promote infection.
Intriguingly, XopL is targeted for degradation by defense-related selective autophagy mediated by NBR1/Joka2, revealing a complex antagonistic interplay between XopL and the host autophagy machinery.
Our results implicate plant antimicrobial autophagy in the depletion of a bacterial virulence factor and unravel an unprecedented pathogen strategy to counteract defense-related autophagy in plant-bacteria interactions.
A balance to death
(2018)
Leaf senescence plays a crucial role in nutrient recovery in late-stage plant development and requires vast transcriptional reprogramming by transcription factors such as ORESARA1 (ORE1). A proteolytic mechanism is now found to control ORE1 degradation, and thus senescence, during nitrogen starvation.
Ecological communities are complex adaptive systems that exhibit remarkable feedbacks between their biomass and trait dynamics. Trait-based aggregate models cope with this complexity by focusing on the temporal development of the community’s aggregate properties such as its total biomass, mean trait and trait variance. They are based on particular assumptions about the shape of the underlying trait distribution, which is commonly assumed to be normal. However, ecologically important traits are usually restricted to a finite range, and empirical trait distributions are often skewed or multimodal. As a result, normal distribution-based aggregate models may fail to adequately represent the biomass and trait dynamics of natural communities. We resolve this mismatch by developing a new moment closure approach assuming the trait values to be beta-distributed. We show that the beta distribution captures important shape properties of both observed and simulated trait distributions, which cannot be captured by a Gaussian. We further demonstrate that a beta distribution-based moment closure can strongly enhance the reliability of trait-based aggregate models. We compare the biomass, mean trait and variance dynamics of a full trait distribution (FD) model to the ones of beta (BA) and normal (NA) distribution-based aggregate models, under different selection regimes. This way, we demonstrate under which general conditions (stabilizing, fluctuating or disruptive selection) different aggregate models are reliable tools. All three models predicted very similar biomass and trait dynamics under stabilizing selection yielding unimodal trait distributions with small standing trait variation. We also obtained an almost perfect match between the results of the FD and BA models under fluctuating selection, promoting skewed trait distributions and ongoing oscillations in the biomass and trait dynamics. In contrast, the NA model showed unrealistic trait dynamics and exhibited different alternative stable states, and thus a high sensitivity to initial conditions under fluctuating selection. Under disruptive selection, both aggregate models failed to reproduce the results of the FD model with the mean trait values remaining within their ecologically feasible ranges in the BA model but not in the NA model. Overall, a beta distribution-based moment closure strongly improved the realism of trait-based aggregate models.
Abiotic stresses cause oxidative damage in plants. Here, we demonstrate that foliar application of an extract from the seaweed Ascophyllum nodosum, SuperFifty (SF), largely prevents paraquat (PQ)-induced oxidative stress in Arabidopsis thaliana. While PQ-stressed plants develop necrotic lesions, plants pre-treated with SF (i.e., primed plants) were unaffected by PQ. Transcriptome analysis revealed induction of reactive oxygen species (ROS) marker genes, genes involved in ROS-induced programmed cell death, and autophagy-related genes after PQ treatment. These changes did not occur in PQ-stressed plants primed with SF. In contrast, upregulation of several carbohydrate metabolism genes, growth, and hormone signaling as well as antioxidant-related genes were specific to SF-primed plants. Metabolomic analyses revealed accumulation of the stress-protective metabolite maltose and the tricarboxylic acid cycle intermediates fumarate and malate in SF-primed plants. Lipidome analysis indicated that those lipids associated with oxidative stress-induced cell death and chloroplast degradation, such as triacylglycerols (TAGs), declined upon SF priming. Our study demonstrated that SF confers tolerance to PQ-induced oxidative stress in A. thaliana, an effect achieved by modulating a range of processes at the transcriptomic, metabolic, and lipid levels.
Abiotic stresses cause oxidative damage in plants. Here, we demonstrate that foliar application of an extract from the seaweed Ascophyllum nodosum, SuperFifty (SF), largely prevents paraquat (PQ)-induced oxidative stress in Arabidopsis thaliana. While PQ-stressed plants develop necrotic lesions, plants pre-treated with SF (i.e., primed plants) were unaffected by PQ. Transcriptome analysis revealed induction of reactive oxygen species (ROS) marker genes, genes involved in ROS-induced programmed cell death, and autophagy-related genes after PQ treatment. These changes did not occur in PQ-stressed plants primed with SF. In contrast, upregulation of several carbohydrate metabolism genes, growth, and hormone signaling as well as antioxidant-related genes were specific to SF-primed plants. Metabolomic analyses revealed accumulation of the stress-protective metabolite maltose and the tricarboxylic acid cycle intermediates fumarate and malate in SF-primed plants. Lipidome analysis indicated that those lipids associated with oxidative stress-induced cell death and chloroplast degradation, such as triacylglycerols (TAGs), declined upon SF priming. Our study demonstrated that SF confers tolerance to PQ-induced oxidative stress in A. thaliana, an effect achieved by modulating a range of processes at the transcriptomic, metabolic, and lipid levels.
Abdominal and general adiposity are independently associated with mortality, but there is no consensus on how best to assess abdominal adiposity. We compared the ability of alternative waist indices to complement body mass index (BMI) when assessing all-cause mortality. We used data from 352,985 participants in the European Prospective Investigation into Cancer and Nutrition (EPIC) and Cox proportional hazards models adjusted for other risk factors. During a mean follow-up of 16.1 years, 38,178 participants died. Combining in one model BMI and a strongly correlated waist index altered the association patterns with mortality, to a predominantly negative association for BMI and a stronger positive association for the waist index, while combining BMI with the uncorrelated A Body Shape Index (ABSI) preserved the association patterns. Sex-specific cohort-wide quartiles of waist indices correlated with BMI could not separate high-risk from low-risk individuals within underweight (BMI<18.5 kg/m(2)) or obese (BMI30 kg/m(2)) categories, while the highest quartile of ABSI separated 18-39% of the individuals within each BMI category, which had 22-55% higher risk of death. In conclusion, only a waist index independent of BMI by design, such as ABSI, complements BMI and enables efficient risk stratification, which could facilitate personalisation of screening, treatment and monitoring.
Abdominal and general adiposity are independently associated with mortality, but there is no consensus on how best to assess abdominal adiposity. We compared the ability of alternative waist indices to complement body mass index (BMI) when assessing all-cause mortality. We used data from 352,985 participants in the European Prospective Investigation into Cancer and Nutrition (EPIC) and Cox proportional hazards models adjusted for other risk factors. During a mean follow-up of 16.1 years, 38,178 participants died. Combining in one model BMI and a strongly correlated waist index altered the association patterns with mortality, to a predominantly negative association for BMI and a stronger positive association for the waist index, while combining BMI with the uncorrelated A Body Shape Index (ABSI) preserved the association patterns. Sex-specific cohort-wide quartiles of waist indices correlated with BMI could not separate high-risk from low-risk individuals within underweight (BMI<18.5 kg/m(2)) or obese (BMI30 kg/m(2)) categories, while the highest quartile of ABSI separated 18-39% of the individuals within each BMI category, which had 22-55% higher risk of death. In conclusion, only a waist index independent of BMI by design, such as ABSI, complements BMI and enables efficient risk stratification, which could facilitate personalisation of screening, treatment and monitoring.
A Cell-free Expression Pipeline for the Generation and Functional Characterization of Nanobodies
(2022)
Cell-free systems are well-established platforms for the rapid synthesis, screening, engineering and modification of all kinds of recombinant proteins ranging from membrane proteins to soluble proteins, enzymes and even toxins. Also within the antibody field the cell-free technology has gained considerable attention with respect to the clinical research pipeline including antibody discovery and production. Besides the classical full-length monoclonal antibodies (mAbs), so-called "nanobodies" (Nbs) have come into focus. A Nb is the smallest naturally-derived functional antibody fragment known and represents the variable domain (VHH, similar to 15 kDa) of a camelid heavy-chain-only antibody (HCAb). Based on their nanoscale and their special structure, Nbs display striking advantages concerning their production, but also their characteristics as binders, such as high stability, diversity, improved tissue penetration and reaching of cavity-like epitopes. The classical way to produce Nbs depends on the use of living cells as production host. Though cell-based production is well-established, it is still time-consuming, laborious and hardly amenable for high-throughput applications. Here, we present for the first time to our knowledge the synthesis of functional Nbs in a standardized mammalian cell-free system based on Chinese hamster ovary (CHO) cell lysates. Cell-free reactions were shown to be time-efficient and easy-to-handle allowing for the "on demand" synthesis of Nbs. Taken together, we complement available methods and demonstrate a promising new system for Nb selection and validation.
Incorporation of noncanonical amino acids (ncAAs) with bioorthogonal reactive groups by amber suppression allows the generation of synthetic proteins with desired novel properties. Such modified molecules are in high demand for basic research and therapeutic applications such as cancer treatment and in vivo imaging. The positioning of the ncAA-responsive codon within the protein's coding sequence is critical in order to maintain protein function, achieve high yields of ncAA-containing protein, and allow effective conjugation. Cell-free ncAA incorporation is of particular interest due to the open nature of cell-free systems and their concurrent ease of manipulation. In this study, we report a straightforward workflow to inquire ncAA positions in regard to incorporation efficiency and protein functionality in a Chinese hamster ovary (CHO) cell-free system. As a model, the well-established orthogonal translation components Escherichia coli tyrosyl-tRNA synthetase (TyrRS) and tRNATyr(CUA) were used to site-specifically incorporate the ncAA p-azido-l-phenylalanine (AzF) in response to UAG codons. A total of seven ncAA sites within an anti-epidermal growth factor receptor (EGFR) single-chain variable fragment (scFv) N-terminally fused to the red fluorescent protein mRFP1 and C-terminally fused to the green fluorescent protein sfGFP were investigated for ncAA incorporation efficiency and impact on antigen binding. The characterized cell-free dual fluorescence reporter system allows screening for ncAA incorporation sites with high incorporation efficiency that maintain protein activity. It is parallelizable, scalable, and easy to operate. We propose that the established CHO-based cell-free dual fluorescence reporter system can be of particular interest for the development of antibody-drug conjugates (ADCs).
Next-generation sequencing methods provide comprehensive data for the analysis of structural and functional analysis of the genome. The draft genomes with low contig number and high N50 value can give insight into the structure of the genome as well as provide information on the annotation of the genome. In this study, we designed a pipeline that can be used to assemble prokaryotic draft genomes with low number of contigs and high N50 value. We aimed to use combination of two de novo assembly tools (SPAdes and IDBA-Hybrid) and evaluate the impact of this approach on the quality metrics of the assemblies. The followed pipeline was tested with the raw sequence data with short reads (< 300) for a total of 10 species from four different genera. To obtain the final draft genomes, we firstly assembled the sequences using SPAdes to find closely related organism using the extracted 16 s rRNA from it. IDBA-Hybrid assembler was used to obtain the second assembly data using the closely related organism genome. SPAdes assembler tool was implemented using the second assembly, produced by IDBA-hybrid as a hint. The results were evaluated using QUAST and BUSCO. The pipeline was successful for the reduction of the contig numbers and increasing the N50 statistical values in the draft genome assemblies while preserving the coverage of the draft genomes.
Genomic prediction has revolutionized crop breeding despite remaining issues of transferability of models to unseen environmental conditions and environments. Usage of endophenotypes rather than genomic markers leads to the possibility of building phenomic prediction models that can account, in part, for this challenge. Here, we compare and contrast genomic prediction and phenomic prediction models for 3 growth-related traits, namely, leaf count, tree height, and trunk diameter, from 2 coffee 3-way hybrid populations exposed to a series of treatment-inducing environmental conditions. The models are based on 7 different statistical methods built with genomic markers and ChlF data used as predictors. This comparative analysis demonstrates that the best-performing phenomic prediction models show higher predictability than the best genomic prediction models for the considered traits and environments in the vast majority of comparisons within 3-way hybrid populations. In addition, we show that phenomic prediction models are transferrable between conditions but to a lower extent between populations and we conclude that chlorophyll a fluorescence data can serve as alternative predictors in statistical models of coffee hybrid performance. Future directions will explore their combination with other endophenotypes to further improve the prediction of growth-related traits for crops.
A comparative whole-genome approach identifies bacterial traits for marine microbial interactions
(2022)
Luca Zoccarato, Daniel Sher et al. leverage publicly available bacterial genomes from marine and other environments to examine traits underlying microbial interactions.
Their results provide a valuable resource to investigate clusters of functional and linked traits to better understand marine bacteria community assembly and dynamics.
Microbial interactions shape the structure and function of microbial communities with profound consequences for biogeochemical cycles and ecosystem health. Yet, most interaction mechanisms are studied only in model systems and their prevalence is unknown. To systematically explore the functional and interaction potential of sequenced marine bacteria, we developed a trait-based approach, and applied it to 473 complete genomes (248 genera), representing a substantial fraction of marine microbial communities.
We identified genome functional clusters (GFCs) which group bacterial taxa with common ecology and life history. Most GFCs revealed unique combinations of interaction traits, including the production of siderophores (10% of genomes), phytohormones (3-8%) and different B vitamins (57-70%). Specific GFCs, comprising Alpha- and Gammaproteobacteria, displayed more interaction traits than expected by chance, and are thus predicted to preferentially interact synergistically and/or antagonistically with bacteria and phytoplankton. Linked trait clusters (LTCs) identify traits that may have evolved to act together (e.g., secretion systems, nitrogen metabolism regulation and B vitamin transporters), providing testable hypotheses for complex mechanisms of microbial interactions.
Our approach translates multidimensional genomic information into an atlas of marine bacteria and their putative functions, relevant for understanding the fundamental rules that govern community assembly and dynamics.
Home range estimation is routine practice in ecological research. While advances in animal tracking technology have increased our capacity to collect data to support home range analysis, these same advances have also resulted in increasingly autocorrelated data. Consequently, the question of which home range estimator to use on modern, highly autocorrelated tracking data remains open. This question is particularly relevant given that most estimators assume independently sampled data. Here, we provide a comprehensive evaluation of the effects of autocorrelation on home range estimation. We base our study on an extensive data set of GPS locations from 369 individuals representing 27 species distributed across five continents. We first assemble a broad array of home range estimators, including Kernel Density Estimation (KDE) with four bandwidth optimizers (Gaussian reference function, autocorrelated‐Gaussian reference function [AKDE], Silverman's rule of thumb, and least squares cross‐validation), Minimum Convex Polygon, and Local Convex Hull methods. Notably, all of these estimators except AKDE assume independent and identically distributed (IID) data. We then employ half‐sample cross‐validation to objectively quantify estimator performance, and the recently introduced effective sample size for home range area estimation ( N̂ area
) to quantify the information content of each data set. We found that AKDE 95% area estimates were larger than conventional IID‐based estimates by a mean factor of 2. The median number of cross‐validated locations included in the hold‐out sets by AKDE 95% (or 50%) estimates was 95.3% (or 50.1%), confirming the larger AKDE ranges were appropriately selective at the specified quantile. Conversely, conventional estimates exhibited negative bias that increased with decreasing N̂ area. To contextualize our empirical results, we performed a detailed simulation study to tease apart how sampling frequency, sampling duration, and the focal animal's movement conspire to affect range estimates. Paralleling our empirical results, the simulation study demonstrated that AKDE was generally more accurate than conventional methods, particularly for small N̂ area. While 72% of the 369 empirical data sets had >1,000 total observations, only 4% had an N̂ area >1,000, where 30% had an N̂ area <30. In this frequently encountered scenario of small N̂ area, AKDE was the only estimator capable of producing an accurate home range estimate on autocorrelated data.
Apoptotic death of cells damaged by genotoxic stress requires regulatory input from surrounding tissues. The C. elegans scaffold protein KRI-1, ortholog of mammalian KRIT1/CCM1, permits DNA damage-induced apoptosis of cells in the germline by an unknown cell non-autonomous mechanism. We reveal that KRI-1 exists in a complex with CCM-2 in the intestine to negatively regulate the ERK-5/MAPK pathway. This allows the KLF-3 transcription factor to facilitate expression of the SLC39 zinc transporter gene zipt-2.3, which functions to sequester zinc in the intestine. Ablation of KRI-1 results in reduced zinc sequestration in the intestine, inhibition of IR-induced MPK-1/ERK1 activation, and apoptosis in the germline. Zinc localization is also perturbed in the vasculature of krit1(-/-) zebrafish, and SLC39 zinc transporters are mis-expressed in Cerebral Cavernous Malformations (CCM) patient tissues. This study provides new insights into the regulation of apoptosis by cross-tissue communication, and suggests a link between zinc localization and CCM disease.
Exendin-4 is a pharmaceutical peptide used in the control of insulin secretion. Structural information on exendin-4 and related peptides especially on the level of quaternary structure is scarce. We present the first published association equilibria of exendin-4 directly measured by static and dynamic light scattering. We show that exendin-4 oligomerization is pH dependent and that these oligomers are of low compactness. We relate our experimental results to a structural hypothesis to describe molecular details of exendin-4 oligomers. Discussion of the validity of this hypothesis is based on NMR, circular dichroism and fluorescence spectroscopy, and light scattering data on exendin-4 and a set of exendin-4 derived peptides. The essential forces driving oligomerization of exendin-4 are helix–helix interactions and interactions of a conserved hydrophobic moiety. Our structural hypothesis suggests that key interactions of exendin-4 monomers in the experimentally supported trimer take place between a defined helical segment and a hydrophobic triangle constituted by the Phe22 residues of the three monomeric subunits. Our data rationalize that Val19 might function as an anchor in the N-terminus of the interacting helix-region and that Trp25 is partially shielded in the oligomer by C-terminal amino acids of the same monomer. Our structural hypothesis suggests that the Trp25 residues do not interact with each other, but with C-terminal Pro residues of their own monomers.
Exendin-4 is a pharmaceutical peptide used in the control of insulin secretion. Structural information on exendin-4 and related peptides especially on the level of quaternary structure is scarce. We present the first published association equilibria of exendin-4 directly measured by static and dynamic light scattering. We show that exendin-4 oligomerization is pH dependent and that these oligomers are of low compactness. We relate our experimental results to a structural hypothesis to describe molecular details of exendin-4 oligomers. Discussion of the validity of this hypothesis is based on NMR, circular dichroism and fluorescence spectroscopy, and light scattering data on exendin-4 and a set of exendin-4 derived peptides. The essential forces driving oligomerization of exendin-4 are helix–helix interactions and interactions of a conserved hydrophobic moiety. Our structural hypothesis suggests that key interactions of exendin-4 monomers in the experimentally supported trimer take place between a defined helical segment and a hydrophobic triangle constituted by the Phe22 residues of the three monomeric subunits. Our data rationalize that Val19 might function as an anchor in the N-terminus of the interacting helix-region and that Trp25 is partially shielded in the oligomer by C-terminal amino acids of the same monomer. Our structural hypothesis suggests that the Trp25 residues do not interact with each other, but with C-terminal Pro residues of their own monomers.