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The life of microorganisms is characterized by two main tasks, rapid growth under conditions permitting growth and survival under stressful conditions. The environments, in which microorganisms dwell, vary in space and time. The microorganisms innovate diverse strategies to readily adapt to the regularly fluctuating environments. Phenotypic heterogeneity is one such strategy, where an isogenic population splits into subpopulations that respond differently under identical environments. Bacterial persistence is a prime example of such phenotypic heterogeneity, whereby a population survives under an antibiotic attack, by keeping a fraction of population in a drug tolerant state, the persister state. Specifically, persister cells grow more slowly than normal cells under growth conditions, but survive longer under stress conditions such as the antibiotic administrations. Bacterial persistence is identified experimentally by examining the population survival upon an antibiotic treatment and the population resuscitation in a growth medium. The underlying population dynamics is explained with a two state model for reversible phenotype switching in a cell within the population. We study this existing model with a new theoretical approach and present analytical expressions for the time scale observed in population growth and resuscitation, that can be easily used to extract underlying model parameters of bacterial persistence. In addition, we recapitulate previously known results on the evolution of such structured population under periodically fluctuating environment using our simple approximation method. Using our analysis, we determine model parameters for Staphylococcus aureus population under several antibiotics and interpret the outcome of cross-drug treatment. Next, we consider the expansion of a population exhibiting phenotype switching in a spatially structured environment consisting of two growth permitting patches separated by an antibiotic patch. The dynamic interplay of growth, death and migration of cells in different patches leads to distinct regimes in population propagation speed as a function of migration rate. We map out the region in parameter space of phenotype switching and migration rate to observe the condition under which persistence is beneficial. Furthermore, we present an extended model that allows mutation from the two phenotypic states to a resistant state. We find that the presence of persister cells may enhance the probability of resistant mutation in a population. Using this model, we explain the experimental results showing the emergence of antibiotic resistance in a Staphylococcus aureus population upon tobramycin treatment. In summary, we identify several roles of bacterial persistence, such as help in spatial expansion, development of multidrug tolerance and emergence of antibiotic resistance. Our study provides a theoretical perspective on the dynamics of bacterial persistence in different environmental conditions. These results can be utilized to design further experiments, and to develop novel strategies to eradicate persistent infections.
The correlations between the chemical structures of the 2,5-diphenyl-1,3,4-oxadiazole compounds and their corresponding vapour deposited film structures on Si/SiO2 were systematically investigated with AFM, XSR and IR for the first time. The result shows that the film structure depends strongly on the substrate temperature (Ts). For the compounds with ether bridge group, the film periodicity depends linearly on the length of the aliphatic chain. The films based on those oxadiazols have ordered structure in the investigated substrate temperature region, while die amide bridged compounds form ordered film only at high Ts due to the formation of intermolecular H-bond. The tilt angle of most molecules is determined by the pi-pi complexes between the molecules. The intermolecular interaction between head groups leads to the structural transformation during the thermal treatment after deposition. All the ether bridged oxadiazoles form films with bilayer structure, while amide bridged oxadiazole form film bilayer structure only when the molecule has a head group.
Preparation and investigation of polymer-foam films and polymer-layer systems for ferroelectrets
(2010)
Piezoelectric materials are very useful for applications in sensors and actuators. In addition to traditional ferroelectric ceramics and ferroelectric polymers, ferroelectrets have recently become a new group of piezoelectrics. Ferroelectrets are functional polymer systems for electromechanical transduction, with elastically heterogeneous cellular structures and internal quasi-permanent dipole moments. The piezoelectricity of ferroelectrets stems from linear changes of the dipole moments in response to external mechanical or electrical stress. Over the past two decades, polypropylene (PP) foams have been investigated with the aim of ferroelectret applications, and some products are already on the market. PP-foam ferroelectrets may exhibit piezoelectric d33 coefficients of 600 pC/N and more. Their operating temperature can, however, not be much higher than 60 °C. Recently developed polyethylene-terephthalate (PET) and cyclo-olefin copolymer (COC) foam ferroelectrets show slightly better d33 thermal stabilities, but usually at the price of smaller d33 values. Therefore, the main aim of this work is the development of new thermally stable ferroelectrets with appreciable piezoelectricity. Physical foaming is a promising technique for generating polymer foams from solid films without any pollution or impurity. Supercritical carbon dioxide (CO2) or nitrogen (N2) are usually employed as foaming agents due to their good solubility in several polymers. Polyethylene propylene (PEN) is a polyester with slightly better properties than PET. A “voiding + inflation + stretching” process has been specifically developed to prepare PEN foams. Solid PEN films are saturated with supercritical CO2 at high pressure and then thermally voided at high temperatures. Controlled inflation (Gas-Diffusion Expansion or GDE) is applied in order to adjust the void dimensions. Additional biaxial stretching decreases the void heights, since it is known lens-shaped voids lead to lower elastic moduli and therefore also to stronger piezoelectricity. Both, contact and corona charging are suitable for the electric charging of PEN foams. The light emission from the dielectric-barrier discharges (DBDs) can be clearly observed. Corona charging in a gas of high dielectric strength such as sulfur hexafluoride (SF6) results in higher gas-breakdown strength in the voids and therefore increases the piezoelectricity. PEN foams can exhibit piezoelectric d33 coefficients as high as 500 pC/N. Dielectric-resonance spectra show elastic moduli c33 of 1 − 12 MPa, anti-resonance frequencies of 0.2 − 0.8 MHz, and electromechanical coupling factors of 0.016 − 0.069. As expected, it is found that PEN foams show better thermal stability than PP and PET. Samples charged at room temperature can be utilized up to 80 − 100 °C. Annealing after charging or charging at elevated temperatures may improve thermal stabilities. Samples charged at suitable elevated temperatures show working temperatures as high as 110 − 120 °C. Acoustic measurements at frequencies of 2 Hz − 20 kHz show that PEN foams can be well applied in this frequency range. Fluorinated ethylene-propylene (FEP) copolymers are fluoropolymers with very good physical, chemical and electrical properties. The charge-storage ability of solid FEP films can be significantly improved by adding boron nitride (BN) filler particles. FEP foams are prepared by means of a one-step procedure consisting of CO2 saturation and subsequent in-situ high-temperature voiding. Piezoelectric d33 coefficients up to 40 pC/N are measured on such FEP foams. Mechanical fatigue tests show that the as-prepared PEN and FEP foams are mechanically stable for long periods of time. Although polymer-foam ferroelectrets have a high application potential, their piezoelectric properties strongly depend on the cellular morphology, i.e. on size, shape, and distribution of the voids. On the other hand, controlled preparation of optimized cellular structures is still a technical challenge. Consequently, new ferroelectrets based on polymer-layer system (sandwiches) have been prepared from FEP. By sandwiching an FEP mesh between two solid FEP films and fusing the polymer system with a laser beam, a well-designed uniform macroscopic cellular structure can be formed. Dielectric resonance spectroscopy reveals piezoelectric d33 coefficients as high as 350 pC/N, elastic moduli of about 0.3 MPa, anti-resonance frequencies of about 30 kHz, and electromechanical coupling factors of about 0.05. Samples charged at elevated temperatures show better thermal stabilities than those charged at room temperature, and the higher the charging temperature, the better is the stability. After proper charging at 140 °C, the working temperatures can be as high as 110 − 120 °C. Acoustic measurements at frequencies of 200 Hz − 20 kHz indicate that the FEP layer systems are suitable for applications at least in this range.
We investigate the rotational and thermal properties of star-forming molecular clouds using hydrodynamic simulations. Stars form from molecular cloud cores by gravoturbulent fragmentation. Understanding the angular momentum and the thermal evolution of cloud cores thus plays a fundamental role in completing the theoretical picture of star formation. This is true not only for current star formation as observed in regions like the Orion nebula or the ρ-Ophiuchi molecular cloud but also for the formation of stars of the first or second generation in the universe. In this thesis we show how the angular momentum of prestellar and protostellar cores evolves and compare our results with observed quantities. The specific angular momentum of prestellar cores in our models agree remarkably well with observations of cloud cores. Some prestellar cores go into collapse to build up stars and stellar systems. The resulting protostellar objects have specific angular momenta that fall into the range of observed binaries. We find that collapse induced by gravoturbulent fragmentation is accompanied by a substantial loss of specific angular momentum. This eases the "angular momentum problem" in star formation even in the absence of magnetic fields. The distribution of stellar masses at birth (the initial mass function, IMF) is another aspect that any theory of star formation must explain. We focus on the influence of the thermodynamic properties of star-forming gas and address this issue by studying the effects of a piecewise polytropic equation of state on the formation of stellar clusters. We increase the polytropic exponent γ from a value below unity to a value above unity at a certain critical density. The change of the thermodynamic state at the critical density selects a characteristic mass scale for fragmentation, which we relate to the peak of the IMF observed in the solar neighborhood. Our investigation generally supports the idea that the distribution of stellar masses depends mainly on the thermodynamic state of the gas. A common assumption is that the chemical evolution of the star-forming gas can be decoupled from its dynamical evolution, with the former never affecting the latter. Although justified in some circumstances, this assumption is not true in every case. In particular, in low-metallicity gas the timescales for reaching the chemical equilibrium are comparable or larger than the dynamical timescales. In this thesis we take a first approach to combine a chemical network with a hydrodynamical code in order to study the influence of low levels of metal enrichment on the cooling and collapse of ionized gas in small protogalactic halos. Our initial conditions represent protogalaxies forming within a fossil HII region -- a previously ionized HII region which has not yet had time to cool and recombine. We show that in these regions, H2 is the dominant and most effective coolant, and that it is the amount of H2 formed that controls whether or not the gas can collapse and form stars. For metallicities Z <= 10<sup>-3 Zsun, metal line cooling alters the density and temperature evolution of the gas by less than 1% compared to the metal-free case at densities below 1 cm<sup>-3 and temperatures above 2000 K. We also find that an external ultraviolet background delays or suppresses the cooling and collapse of the gas regardless of whether it is metal-enriched or not. Finally, we study the dependence of this process on redshift and mass of the dark matter halo.
The electronic charge distributions of transition metal complexes fundamentally determine their chemical reactivity. Experimental access to the local valence electronic structure is therefore crucial in order to determine how frontier orbitals are delocalized between different atomic sites and electronic charge is spread throughout the transition metal complex. To that end, X-ray spectroscopies are employed in this thesis to study a series of solution-phase iron complexes with respect to the response of their local electronic charge distributions to different external influences. Using resonant inelastic X-ray scattering (RIXS) and X-ray absorption spectroscopy (XAS) at the iron L-edge, changes in local charge densities are investigated at the iron center depending on different ligand cages as well as solvent environments. A varying degree of charge delocalization from the metal center onto the ligands is observed, which is governed by the capabilities of the ligands to accept charge density into their unoccupied orbitals. Specific solvents are furthermore shown to amplify this process. Solvent molecules of strong Lewis-acids withdraw charge from the ligand allowing in turn for more metal charge to be delocalized onto the ligand. The resulting local charge deficiencies at the metal center are, however, counteracted by competing electron-donation channels from the ligand towards the iron, which are additionally revealed. This is interpreted as a compensating effect which strives to maintain local charge densities at the iron center. This mechanism of charge density preservation is found to be of general nature. Using time-resolved RIXS and XAS at the iron L-edge, an analogous interplay of electron donation and back-donation channels is also revealed for the case of charge-transfer excited states. In such transient configurations, the electronic occupation of iron-centered frontier orbitals has been altered by an optical excitation. Changes in local charge densities that are expected to follow an increased or decreased population of iron-centered orbitals are, however, again counteracted. By scaling the degree of electron donation from the ligand onto the metal, local charge densities at the iron center can be efficiently maintained. Since charge-transfer excitations, however, often constitute the initial step in many electron transfer processes, these findings challenge common notions of charge-separation in transition metal dyes.
Organic semiconductors are a promising class of materials. Their special properties are the particularly good absorption, low weight and easy processing into thin films. Therefore, intense research has been devoted to the realization of thin film organic solar cells (OPVs). Because of the low dielectric constant of organic semiconductors, primary excitations (excitons) are strongly bound and a type II heterojunction needs to be introduced to split these excitations into free charges. Therefore, most organic solar cells consist of at least an electron donor and electron acceptor material. For such donor acceptor systems mainly three states are relevant; the photoexcited exciton on the donor or acceptor material, the charge transfer state at the donor-acceptor interface and the charge separated state of a free electron and hole. The interplay between these states significantly determines the efficiency of organic solar cells. Due to the high absorption and the low charge carrier mobilities, the active layers are usually thin but also, exciton dissociation and free charge formation proceeds rapidely, which makes the study of carrier dynamics highly challenging.
Therefore, the focus of this work was first to install new experimental setups for the investigation of the charge carrier dynamics in complete devices with superior sensitivity and time resolution and, second, to apply these methods to prototypical photovoltaic materials to address specific questions in the field of organic and hybrid photovoltaics.
Regarding the first goal, a new setup combining transient absorption spectroscopy (TAS) and time delayed collection field (TDCF) was designed and installed in Potsdam. An important part of this work concerned the improvement of the electronic components with respect to time resolution and sensitivity. To this end, a highly sensitive amplifier for driving and detecting the device response in TDCF was developed. This system was then applied to selected organic and hybrid model systems with a particular focus on the understanding of the loss mechanisms that limit the fill factor and short circuit current of organic solar cells.
The first model system was a hybrid photovoltaic material comprising inorganic quantum dots decorated with organic ligands. Measurements with TDCF revealed fast free carrier recombination, in part assisted by traps, while bias-assisted charge extraction measurements showed high mobility. The measured parameters then served as input for a successful description of the device performance with an analytical model.
With a further improvement of the instrumentation, a second topic was the detailed analysis of non-geminate recombination in a disordered polymer:fullerene blend where an important question was the effect of disorder on the carrier dynamics. The measurements revealed that early time highly mobile charges undergo fast non-geminate recombination at the contacts, causing an apparent field dependence of free charge generation in TDCF experiments if not conducted properly. On the other hand, recombination the later time scale was determined by dispersive recombination in the bulk of the active layer, showing the characteristics of carrier dynamics in an exponential density of state distribution. Importantly, the comparison with steady state recombination data suggested a very weak impact of non-thermalized carriers on the recombination properties of the solar cells under application relevant illumination conditions.
Finally, temperature and field dependent studies of free charge generation were performed on three donor-acceptor combinations, with two donor polymers of the same material family blended with two different fullerene acceptor molecules. These particular material combinations were chosen to analyze the influence of the energetic and morphology of the blend on the efficiency of charge generation. To this end, activation energies for photocurrent generation were accurately determined for a wide range of excitation energies. The results prove that the formation of free charge is via thermalized charge transfer states and does not involve hot exciton splitting. Surprisingly, activation energies were of the order of thermal energy at room temperature. This led to the important conclusion that organic solar cells perform well not because of predominate high energy pathways but because the thermalized CT states are weakly bound. In addition, a model is introduced to interconnect the dissociation efficiency of the charge transfer state with its recombination observable with photoluminescence, which rules out a previously proposed two-pool model for free charge formation and recombination. Finally, based on the results, proposals for the further development of organic solar cells are formulated.
Understanding the changes that follow UV-excitation in thionucleobases is of great importance for the study of light-induced DNA lesions and, in a broader context, for their applications in medicine and biochemistry. Their ultrafast photophysical reactions can alter the chemical structure of DNA - leading to damages to the genetic code - as proven by the increased skin cancer risk observed for patients treated with thiouracil for its immunosuppressant properties.
In this thesis, I present four research papers that result from an investigation of the ultrafast dynamics of 2-thiouracil by means of ultrafast x-ray probing combined with electron spectroscopy. A molecular jet in the gas phase is excited with a uv pulse and then ionized with x-ray radiation from a Free Electron Laser. The kinetic energy of the emitted electrons is measured in a magnetic bottle spectrometer. The spectra of the measured photo and Auger electrons are used to derive a picture of the changes in the geometrical and electronic configurations. The results allow us to look at the dynamical processes from a new perspective, thanks to the element- and site- sensitivity of x-rays. The custom-built URSA-PQ apparatus used in the experiment is described. It has been commissioned and used at the FL24 beamline of the FLASH2 FEL, showing an electron kinetic energy resolution of ∆E/E ~ 40 and a pump-probe timing resolution of 190 f s. X-ray only photoelectron and Auger spectra of 2-thiouracil are extracted from the data and used as reference. Photoelectrons following the formation a 2p core hole are identified, as well as resonant and non-resonant Auger electrons. At the L 1 edge, Coster-Kronig decay is observed from the 2s core hole.
The UV-induced changes in the 2p photoline allow the study the electronic-state dynamics. With the use of an Excited-State Chemical Shift (ESCS) model, we observe a ultrafast ground-state relaxation within 250 f s. Furthermore, an oscillation with a 250 f s period is observed in the 2p binding energy, showing a coherent population exchange between electronic states. Auger electrons from the 2p core hole are analyzed and used to deduce a ultrafast C −S bond expansion on a sub 100 f s scale. A simple Coulomb-model, coupled to quantum chemical calculations, can be used to infer the geometrical changes in the molecular structure.
The Lyman-𝛼 (Ly𝛼) line commonly assists in the detection of high-redshift galaxies, the so-called Lyman-alpha emitters (LAEs). LAEs are useful tools to study the baryonic matter distribution of the high-redshift universe. Exploring their spatial distribution not only reveals the large-scale structure of the universe at early epochs, but it also provides an insight into the early formation and evolution of the galaxies we observe today. Because dark matter halos (DMHs) serve as sites of galaxy formation, the LAE distribution also traces that of the underlying dark matter. However, the details of this relation and their co-evolution over time remain unclear. Moreover, theoretical studies predict that the spatial distribution of LAEs also impacts their own circumgalactic medium (CGM) by influencing their extended Ly𝛼 gaseous halos (LAHs), whose origin is still under investigation. In this thesis, I make several contributions to improve the knowledge on these fields using samples of LAEs observed with the Multi Unit Spectroscopic Explorer (MUSE) at redshifts of 3 < 𝑧 < 6.
Stars are born in turbulent molecular clouds that fragment and collapse under the influence of their own gravity, forming a cluster of hundred or more stars. The star formation process is controlled by the interplay between supersonic turbulence and gravity. In this work, the properties of stellar clusters created by numerical simulations of gravoturbulent fragmentation are compared to those from observations. This includes the analysis of properties of individual protostars as well as statistical properties of the entire cluster. It is demonstrated that protostellar mass accretion is a highly dynamical and time-variant process. The peak accretion rate is reached shortly after the formation of the protostellar core. It is about one order of magnitude higher than the constant accretion rate predicted by the collapse of a classical singular isothermal sphere, in agreement with the observations. For a more reasonable comparison, the model accretion rates are converted to the observables bolometric temperature, bolometric luminosity, and envelope mass. The accretion rates from the simulations are used as input for an evolutionary scheme. The resulting distribution in the Tbol-Lbol-Menv parameter space is then compared to observational data by means of a 3D Kolmogorov-Smirnov test. The highest probability found that the distributions of model tracks and observational data points are drawn from the same population is 70%. The ratios of objects belonging to different evolutionary classes in observed star-forming clusters are compared to the temporal evolution of the gravoturbulent models in order to estimate the evolutionary stage of a cluster. While it is difficult to estimate absolute ages, the realtive numbers of young stars reveal the evolutionary status of a cluster with respect to other clusters. The sequence shows Serpens as the youngest and IC 348 as the most evolved of the investigated clusters. Finally the structures of young star clusters are investigated by applying different statistical methods like the normalised mean correlation length and the minimum spanning tree technique and by a newly defined measure for the cluster elongation. The clustering parameters of the model clusters correspond in many cases well to those from observed ones. The temporal evolution of the clustering parameters shows that the star cluster builds up from several subclusters and evolves to a more centrally concentrated cluster, while the cluster expands slower than new stars are formed.
The non-linear behaviour of the atmospheric dynamics is not well understood and makes the evaluation and usage of regional climate models (RCMs) difficult. Due to these non-linearities, chaos and internal variability (IV) within the RCMs are induced, leading to a sensitivity of RCMs to their initial conditions (IC). The IV is the ability of RCMs to realise different solutions of simulations that differ in their IC, but have the same lower and lateral boundary conditions (LBC), hence can be defined as the across-member spread between the ensemble members.
For the investigation of the IV and the dynamical and diabatic contributions generating the IV four ensembles of RCM simulations are performed with the atmospheric regional model HIRHAM5. The integration area is the Arctic and each ensemble consists of 20 members. The ensembles cover the time period from July to September for the years 2006, 2007, 2009 and 2012. The ensemble members have the same LBC and differ in their IC only. The different IC are arranged by an initialisation time that shifts successively by six hours. Within each ensemble the first simulation starts on 1st July at 00 UTC and the last simulation starts on 5th July at 18 UTC and each simulation runs until 30th September. The analysed time period ranges from 6th July to 30th September, the time period that is covered by all ensemble members. The model runs without any nudging to allow a free development of each simulation to get the full internal variability within the HIRHAM5.
As a measure of the model generated IV, the across-member standard deviation and the across-member variance is used and the dynamical and diabatic processes influencing the IV are estimated by applying a diagnostic budget study for the IV tendency of the potential temperature developed by Nikiema and Laprise [2010] and Nikiema and Laprise [2011]. The diagnostic budget study is based on the first law of thermodynamics for potential temperature and the mass-continuity equation. The resulting budget equation reveals seven contributions to the potential temperature IV tendency.
As a first study, this work analyses the IV within the HIRHAM5. Therefore, atmospheric circulation parameters and the potential temperature for all four ensemble years are investigated. Similar to previous studies, the IV fluctuates strongly in time. Further, due to the fact that all ensemble members are forced with the same LBC, the IV depends on the vertical level within the troposphere, with high values in the lower troposphere and at 500 hPa and low values in the upper troposphere and at the surface. By the same reason, the spatial distribution shows low values of IV at the boundaries of the model domain.
The diagnostic budget study for the IV tendency of potential temperature reveals that the seven contributions fluctuate in time like the IV. However, the individual terms reach different absolute magnitudes. The budget study identifies the horizontal and vertical ‘baroclinic’ terms as the main contributors to the IV tendency, with the horizontal ‘baroclinic’ term producing and the vertical ‘baroclinic’ term reducing the IV. The other terms fluctuate around zero, because they are small in general or are balanced due to the domain average.
The comparison of the results obtained for the four different ensembles (summers 2006, 2007, 2009 and 2012) reveals that on average the findings for each ensemble are quite similar concerning the magnitude and the general pattern of IV and its contributions. However, near the surface a weaker IV is produced with decreasing sea ice extent. This is caused by a smaller impact of the horizontal 'baroclinic' term over some regions and by the changing diabatic processes, particularly a more intense reducing tendency of the IV due to condensative heating. However, it has to be emphasised that the behaviour of the IV and its dynamical and diabatic contributions are influenced mainly by complex atmospheric feedbacks and large-scale processes and not by the sea ice distribution.
Additionally, a comparison with a second RCM covering the Arctic and using the same LBCs and IC is performed. For both models very similar results concerning the IV and its dynamical and diabatic contributions are found. Hence, this investigation leads to the conclusion that the IV is a natural phenomenon and is independent from the applied RCM.
The purpose of Probabilistic Seismic Hazard Assessment (PSHA) at a construction site is to provide the engineers with a probabilistic estimate of ground-motion level that could be equaled or exceeded at least once in the structure’s design lifetime. A certainty on the predicted ground-motion allows the engineers to confidently optimize structural design and mitigate the risk of extensive damage, or in worst case, a collapse. It is therefore in interest of engineering, insurance, disaster mitigation, and security of society at large, to reduce uncertainties in prediction of design ground-motion levels.
In this study, I am concerned with quantifying and reducing the prediction uncertainty of regression-based Ground-Motion Prediction Equations (GMPEs). Essentially, GMPEs are regressed best-fit formulae relating event, path, and site parameters (predictor variables) to observed ground-motion values at the site (prediction variable). GMPEs are characterized by a parametric median (μ) and a non-parametric variance (σ) of prediction. μ captures the known ground-motion physics i.e., scaling with earthquake rupture properties (event), attenuation with distance from source (region/path), and amplification due to local soil conditions (site); while σ quantifies the natural variability of data that eludes μ. In a broad sense, the GMPE prediction uncertainty is cumulative of 1) uncertainty on estimated regression coefficients (uncertainty on μ,σ_μ), and 2) the inherent natural randomness of data (σ). The extent of μ parametrization, the quantity, and quality of ground-motion data used in a regression, govern the size of its prediction uncertainty: σ_μ and σ.
In the first step, I present the impact of μ parametrization on the size of σ_μ and σ. Over-parametrization appears to increase the σ_μ, because of the large number of regression coefficients (in μ) to be estimated with insufficient data. Under-parametrization mitigates σ_μ, but the reduced explanatory strength of μ is reflected in inflated σ. For an optimally parametrized GMPE, a ~10% reduction in σ is attained by discarding the low-quality data from pan-European events with incorrect parametric values (of predictor variables).
In case of regions with scarce ground-motion recordings, without under-parametrization, the only way to mitigate σ_μ is to substitute long-term earthquake data at a location with short-term samples of data across several locations – the Ergodic Assumption. However, the price of ergodic assumption is an increased σ, due to the region-to-region and site-to-site differences in ground-motion physics. σ of an ergodic GMPE developed from generic ergodic dataset is much larger than that of non-ergodic GMPEs developed from region- and site-specific non-ergodic subsets - which were too sparse to produce their specific GMPEs. Fortunately, with the dramatic increase in recorded ground-motion data at several sites across Europe and Middle-East, I could quantify the region- and site-specific differences in ground-motion scaling and upgrade the GMPEs with 1) substantially more accurate region- and site-specific μ for sites in Italy and Turkey, and 2) significantly smaller prediction variance σ. The benefit of such enhancements to GMPEs is quite evident in my comparison of PSHA estimates from ergodic versus region- and site-specific GMPEs; where the differences in predicted design ground-motion levels, at several sites in Europe and Middle-Eastern regions, are as large as ~50%.
Resolving the ergodic assumption with mixed-effects regressions is feasible when the quantified region- and site-specific effects are physically meaningful, and the non-ergodic subsets (regions and sites) are defined a priori through expert knowledge. In absence of expert definitions, I demonstrate the potential of machine learning techniques in identifying efficient clusters of site-specific non-ergodic subsets, based on latent similarities in their ground-motion data. Clustered site-specific GMPEs bridge the gap between site-specific and fully ergodic GMPEs, with their partially non-ergodic μ and, σ ~15% smaller than the ergodic variance.
The methodological refinements to GMPE development produced in this study are applicable to new ground-motion datasets, to further enhance certainty of ground-motion prediction and thereby, seismic hazard assessment. Advanced statistical tools show great potential in improving the predictive capabilities of GMPEs, but the fundamental requirement remains: large quantity of high-quality ground-motion data from several sites for an extended time-period.
The Thesis is focused on the properties of self-organized nanostructures. Atomic and electronic properties of different systems have been investigated using methods of electron diffraction, scanning tunneling microscopy and photoelectron spectroscopy. Implementation of the STM technique (including design, construction, and tuning of the UHV experimental set-up) has been done in the framework of present work. This time-consuming work is reported to greater detail in the experimental part of this Thesis. The scientific part starts from the study of quantum-size effects in the electronic structure of a two-dimensional Ag film on the supporting substrate Ni(111). Distinct quantum well states in the sp-band of Ag were observed in photoelectron spectra. Analysis of thickness- and angle-dependent photoemission supplies novel information on the properties of the interface. For the first time the Ni(111) relative band gap was indirectly probed in the ground-state through the electronic structure of quantum well states in the adlayer. This is particularly important for Ni where valence electrons are strongly correlated. Comparison of the experiment with calculations performed in the formalism of the extended phase accumulation model gives the substrate gap which is fully consistent with the one obtained by ab-initio LDA calculations. It is, however, in controversy to the band structure of Ni measured directly by photoemission. These results lend credit to the simplest view of photoemission from Ni, assigning early observed contradictions between theory and experiments to electron correlation effects in the final state of photoemission. Further, nanosystems of lower dimensionality have been studied. Stepped surfaces W(331) and W(551) were used as one-dimensional model systems and as templates for self-organization of Au nanoclusters. Photon energy dependent photoemission revealed a surface resonance which was never observed before on W(110) which is the base plane of the terrace microsurfaces. The dispersion E(k) of this state measured on stepped W(331) and W(551) with angle-resolved photoelectron spectroscopy is modified by a strong umklapp effect. It appears as two parabolas shifted symmetrically relative to the microsurface normal by half of the Brillouin zone of the step superlattice. The reported results are very important for understanding of the electronic properties of low-dimensional nanostructures. It was also established that W(331) and W(551) can serve as templates for self-organization of metallic nanostructures. A combined study of electronic and atomic properties of sub-monolayer amounts of gold deposited on these templates have shown that if the substrate is slightly pre-oxidized and the temperature is elevated, then Au can alloy with the first monolayer of W. As a result, a nanostructure of uniform clusters of a surface alloy is produced all over the steps. Such clusters feature a novel sp-band in the vicinity of the Fermi level, which appears split into constant energy levels due to effects of lateral quantization. The last and main part of this work is devoted to large-scale reconstructions on surfaces and nanostructures self-assembled on top. The two-dimensional surface carbide W(110)/C-R(15x3) has been extensively investigated. Photoemission studies of quantum size effects in the electronic structure of this reconstruction, combined with an investigation of its surface geometry, lead to an advanced structural model of the carbide overlayer. It was discovered that W(110)/C-R(15x3) can control self-organization of adlayers into nanostructures with extremely different electronic and structural properties. Thus, it was established that at elevated temperature the R(15x3) superstructure controls the self-assembly of sub-monolayer amounts of Au into nm-wide nanostripes. Based on the results of core level photoemission, the R(15x3)-induced surface alloying which takes place between Au and W can be claimed as driving force of self-organization. The observed stripes exhibit a characteristic one-dimensional electronic structure with laterally quantized d-bands. Obviously, these are very important for applications, since dimensions of electronic devices have already stepped into the nm-range, where quantum-size phenomena must undoubtedly be considered. Moreover, formation of perfectly uniform molecular clusters of C60 was demonstrated and described in terms of the van der Waals formalism. It is the first experimental observation of two-dimensional fullerene nanoclusters with "magic numbers". Calculations of the cluster potentials using the static approach have revealed characteristic minima in the interaction energy. They are achieved for 4 and 7 molecules per cluster. The obtained "magic numbers" and the corresponding cluster structures are fully consistent with the results of the STM measurements.
Percolation process, which is intrinsically a phase transition process near the critical point, is ubiquitous in nature. Many of its applications embrace a wide spectrum of natural phenomena ranging from the forest fires, spread of contagious diseases, social behaviour dynamics to mathematical finance, formation of bedrocks and biological systems. The topology generated by the percolation process near the critical point is a random (stochastic) fractal. It is fundamental to the percolation theory that near the critical point, a unique infinite fractal structure, namely the infinite cluster, would emerge. As de Gennes suggested, the properties of the infinite cluster could be deduced by studying the dynamical behaviour of the random walk process taking place on it. He coined the term the ant in the labyrinth. The random walk process on such an infinite fractal cluster exhibits a subdiffusive dynamics in the sense that the mean squared displacement grows as ~t2/dw, where dw, called the fractal dimension of the random walk path, is greater than 2. Thus, the random walk process on the infinite cluster is classified as a process exhibiting the properties of anomalous diffusions. Yet near the critical point, the infinite cluster is not the sole emergent topology, but it coexists with other clusters whose size is finite. Though finite, on specific length scales these finite clusters exhibit fractal properties as well. In this work, it is assumed that the random walk process could take place on these finite size objects as well. Bearing this assumption in mind requires one address the non-equilibrium initial condition. Due to the lack of knowledge on the propagator of the random walk process in stochastic random environments, a phenomenological correspondence between the renowned Ornstein-Uhlenbeck process and the random walk process on finite size clusters is established. It is elucidated that when an ensemble of these finite size clusters and the infinite cluster is considered, the anisotropy and size of these finite clusters effects the mean squared displacement and its time averaged counterpart to grow in time as ~t(d+df (t-2))/dw, where d is the embedding Euclidean dimension, df is the fractal dimension of the infinite cluster, and , called the Fisher exponent, is a critical exponent governing the power-law distribution of the finite size clusters. Moreover, it is demonstrated that, even though the random walk process on a specific finite size cluster is ergodic, it exhibits a persistent non-ergodic behaviour when an ensemble of finite size and the infinite clusters is considered.
Over the last decades, the Arctic regions of the earth have warmed at a rate 2–3 times faster than the global average– a phenomenon called Arctic Amplification. A complex, non-linear interplay of physical processes and unique pecularities in the Arctic climate system is responsible for this, but the relative role of individual processes remains to be debated. This thesis focuses on the climate change and related processes on Svalbard, an archipelago in the North Atlantic sector of the Arctic, which is shown to be a "hotspot" for the amplified recent warming during winter. In this highly dynamical region, both oceanic and atmospheric large-scale transports of heat and moisture interfere with spatially inhomogenous surface conditions, and the corresponding energy exchange strongly shapes the atmospheric boundary layer. In the first part, Pan-Svalbard gradients in the surface air temperature (SAT) and sea ice extent (SIE) in the fjords are quantified and characterized. This analysis is based on observational data from meteorological stations, operational sea ice charts, and hydrographic observations from the adjacent ocean, which cover the 1980–2016 period. It is revealed that typical estimates of SIE during late winter range from 40–50% (80–90%) in the western (eastern) parts of Svalbard. However, strong SAT warming during winter of the order of 2–3K per decade dictates excessive ice loss, leaving fjords in the western parts essentially ice-free in recent winters. It is further demostrated that warm water currents on the west coast of Svalbard, as well as meridional winds contribute to regional differences in the SIE evolution. In particular, the proximity to warm water masses of the West Spitsbergen Current can explain 20–37% of SIE variability in fjords on west Svalbard, while meridional winds and associated ice drift may regionally explain 20–50% of SIE variability in the north and northeast. Strong SAT warming has overruled these impacts in recent years, though.
In the next part of the analysis, the contribution of large-scale atmospheric circulation changes to the Svalbard temperature development over the last 20 years is investigated. A study employing kinematic air-back trajectories for Ny-Ålesund reveals a shift in the source regions of lower-troposheric air over time for both the winter and the summer season. In winter, air in the recent decade is more often of lower-latitude Atlantic origin, and less frequent of Arctic origin. This affects heat- and moisture advection towards Svalbard, potentially manipulating clouds and longwave downward radiation in that region. A closer investigation indicates that this shift during winter is associated with a strengthened Ural blocking high and Icelandic low, and contributes about 25% to the observed winter warming on Svalbard over the last 20 years. Conversely, circulation changes during summer include a strengthened Greenland blocking high which leads to more frequent cold air advection from the central Arctic towards Svalbard, and less frequent air mass origins in the lower latitudes of the North Atlantic. Hence, circulation changes during winter are shown to have an amplifying effect on the recent warming on Svalbard, while summer circulation changes tend to mask warming.
An observational case study using upper air soundings from the AWIPEV research station in Ny-Ålesund during May–June 2017 underlines that such circulation changes during summer are associated with tropospheric anomalies in temperature, humidity and boundary layer height.
In the last part of the analysis, the regional representativeness of the above described changes around Svalbard for the broader Arctic is investigated. Therefore, the terms in the diagnostic temperature equation in the Arctic-wide lower troposphere are examined for the Era-Interim atmospheric reanalysis product. Significant positive trends in diabatic heating rates, consistent with latent heat transfer to the atmosphere over regions of increasing ice melt, are found for all seasons over the Barents/Kara Seas, and in individual months in the vicinity of Svalbard. The above introduced warm (cold) advection trends during winter (summer) on Svalbard are successfully reproduced. Regarding winter, they are regionally confined to the Barents Sea and Fram Strait, between 70°–80°N, resembling a unique feature in the whole Arctic. Summer cold advection trends are confined to the area between eastern Greenland and Franz Josef Land, enclosing Svalbard.
Transport processes in and of cells are of major importance for the survival of the organism. Muscles have to be able to contract, chromosomes have to be moved to opposing ends of the cell during mitosis, and organelles, which are compartments enclosed by membranes, have to be transported along molecular tracks. Molecular motors are proteins whose main task is moving other molecules.For that purpose they transform the chemical energy released in the hydrolysis of ATP into mechanical work. The motors of the cytoskeleton belong to the three super families myosin, kinesin and dynein. Their tracks are filaments of the cytoskeleton, namely actin and the microtubuli. Here, we examine stochastic models which are used for describing the movements of these linear molecular motors. The scale of the movements comprises the regime of single steps of a motor protein up to the directed walk along a filament. A single step bridges around 10 nm, depending on the protein, and takes about 10 ms, if there is enough ATP available. Our models comprise M states or conformations the motor can attain during its movement along a one-dimensional track. At K locations along the track transitions between the states are possible. The velocity of the protein depending on the transition rates between the single states can be determined analytically. We calculate this velocity for systems of up to four states and locations and are able to derive a number of rules which are helpful in estimating the behaviour of an arbitrary given system. Beyond that we have a look at decoupled subsystems, i.e., one or a couple of states which have no connection to the remaining system. With a certain probability a motor undergoes a cycle of conformational changes, with another probability an independent other cycle. Active elements in real transport processes by molecular motors will not be limited to the transitions between the states. In distorted networks or starting from the discrete Master equation of the system, it is possible to specify horizontal rates, too, which furthermore no longer have to fulfill the conditions of detailed balance. Doing so, we obtain unique, complete paths through the respective network and rules for the dependence of the total current on all the rates of the system. Besides, we view the time evolutions for given initial distributions. In enzymatic reactions there is the idea of a main pathway these reactions follow preferably. We determine optimal paths and the maximal flow for given networks. In order to specify the dependence of the motor's velocity on its fuel ATP, we have a look at possible reaction kinetics determining the connection between unbalanced transitions rates and ATP-concentration. Depending on the type of reaction kinetics and the number of unbalanced rates, we obtain qualitatively different curves connecting the velocity to the ATP-concentration. The molecular interaction potentials the motor experiences on its way along its track are unknown. We compare different simple potentials and the effects the localization of the vertical rates in the network model has on the transport coefficients in comparison to other models.
Recurrence plots, a rather promising tool of data analysis, have been introduced by Eckman et al. in 1987. They visualise recurrences in phase space and give an overview about the system's dynamics. Two features have made the method rather popular. Firstly they are rather simple to compute and secondly they are putatively easy to interpret. However, the straightforward interpretation of recurrence plots for some systems yields rather surprising results. For example indications of low dimensional chaos have been reported for stock marked data, based on recurrence plots. In this work we exploit recurrences or ``naturally occurring analogues'' as they were termed by E. Lorenz, to obtain three key results. One of which is that the most striking structures which are found in recurrence plots are hinged to the correlation entropy and the correlation dimension of the underlying system. Even though an eventual embedding changes the structures in recurrence plots considerably these dynamical invariants can be estimated independently of the special parameters used for the computation. The second key result is that the attractor can be reconstructed from the recurrence plot. This means that it contains all topological information of the system under question in the limit of long time series. The graphical representation of the recurrences can also help to develop new algorithms and exploit specific structures. This feature has helped to obtain the third key result of this study. Based on recurrences to points which have the same ``recurrence structure'', it is possible to generate surrogates of the system which capture all relevant dynamical characteristics, such as entropies, dimensions and characteristic frequencies of the system. These so generated surrogates are shadowed by a trajectory of the system which starts at different initial conditions than the time series in question. They can be used then to test for complex synchronisation.