530 Physik
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- ageing (2)
- anomalous diffusion (2)
- biological physics (2)
- critical avalanche dynamics (2)
- gene regulatory networks (2)
- memory and delay (2)
- neuronal networks (2)
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Institute
The main goal of this cumulative thesis is the derivation of surface emissivity data in the infrared from radiance measurements of Venus. Since these data are diagnostic of the chemical composition and grain size of the surface material, they can help to improve knowledge of the planet’s geology. Spectrally resolved images of nightside emissions in the range 1.0-5.1 μm were recently acquired by the InfraRed Mapping channel of the Visible and InfraRed Thermal Imaging Spectrometer (VIRTIS-M-IR) aboard ESA’s Venus EXpress (VEX). Surface and deep atmospheric thermal emissions in this spectral range are strongly obscured by the extremely opaque atmosphere, but three narrow spectral windows at 1.02, 1.10, and 1.18 μm allow the sounding of the surface. Additional windows between 1.3 and 2.6 μm provide information on atmospheric parameters that is required to interpret the surface signals. Quantitative data on surface and atmosphere can be retrieved from the measured spectra by comparing them to simulated spectra. A numerical radiative transfer model is used in this work to simulate the observable radiation as a function of atmospheric, surface, and instrumental parameters. It is a line-by-line model taking into account thermal emissions by surface and atmosphere as well as absorption and multiple scattering by gases and clouds. The VIRTIS-M-IR measurements are first preprocessed to obtain an optimal data basis for the subsequent steps. In this process, a detailed detector responsivity analysis enables the optimization of the data consistency. The measurement data have a relatively low spectral information content, and different parameter vectors can describe the same measured spectrum equally well. A usual method to regularize the retrieval of the wanted parameters from a measured spectrum is to take into account a priori mean values and standard deviations of the parameters to be retrieved. This decreases the probability to obtain unreasonable parameter values. The multi-spectrum retrieval algorithm MSR is developed to additionally consider physically realistic spatial and temporal a priori correlations between retrieval parameters describing different measurements. Neglecting geologic activity, MSR also allows the retrieval of an emissivity map as a parameter vector that is common to several spectrally resolved images that cover the same surface target. Even applying MSR, it is difficult to obtain reliable emissivity maps in absolute values. A detailed retrieval error analysis based on synthetic spectra reveals that this is mainly due to interferences from parameters that cannot be derived from the spectra themselves, but that have to be set to assumed values to enable the radiative transfer simulations. The MSR retrieval of emissivity maps relative to a fixed emissivity is shown to effectively avoid most emissivity retrieval errors. Relative emissivity maps at 1.02, 1.10, and 1.18 μm are finally derived from many VIRTIS-M-IR measurements that cover a surface target at Themis Regio. They are interpreted as spatial variations relative to an assumed emissivity mean of the target. It is verified that the maps are largely independent of the choice of many interfering parameters as well as the utilized measurement data set. These are the first Venus IR emissivity data maps based on a consistent application of a full radiative transfer simulation and a retrieval algorithm that respects a priori information. The maps are sufficiently reliable for future geologic interpretations.
The subject of the present thesis is the one-dimensional Bose gas. Since long-rang order is destroyed by infra-red fluctuations in one dimension, only the formation of a quasi-condensate is possible, which exhibits suppressed density fluctuations, but whose phase fluctuates strongly. It is shown that modified mean-field theories based on a symmetry-breaking approach can even characterise phase coherence properties of such a quasi-condensate properly. A correct description of the transition from the degenerate ideal Bose gas to the quasi-condensate, which is a smooth cross-over rather than a phase transition, is not possible though. Basic conditions for the applicability of the theories are not fulfilled in this regime, such that the existence of a critical point is predicted.
The theories are compared on the basis of their excitation sprectum, equation of state, density fluctuations and related correlation functions. High-temperature expansions of the corresponding integrals are derived analytically for the numerical evaluation of the self-consistent integral equations. Apart from that, the Stochastic Gross-Pitaevskii equation (SGPE), a non-linear Langevin equation, is analysed numerically by means of Monte-Carlo simulations and the results are compared to those of the mean-field theories. In this context, a lot of attention is payed to the appropriate choice of the parameters. The simulations prove that the SGPE is capable of describing the cross-over properly, but highlight the limitations of the widely used local density approximation as well.
We define and study in detail utraslow scaled Brownian motion (USBM) characterized by a time dependent diffusion coefficient of the form . For unconfined motion the mean squared displacement (MSD) of USBM exhibits an ultraslow, logarithmic growth as function of time, in contrast to the conventional scaled Brownian motion. In a harmonic potential the MSD of USBM does not saturate but asymptotically decays inverse-proportionally to time, reflecting the highly non-stationary character of the process. We show that the process is weakly non-ergodic in the sense that the time averaged MSD does not converge to the regular MSD even at long times, and for unconfined motion combines a linear lag time dependence with a logarithmic term. The weakly non-ergodic behaviour is quantified in terms of the ergodicity breaking parameter. The USBM process is also shown to be ageing: observables of the system depend on the time gap between initiation of the test particle and start of the measurement of its motion. Our analytical results are shown to agree excellently with extensive computer simulations.
We define and study in detail utraslow scaled Brownian motion (USBM) characterized by a time dependent diffusion coefficient of the form . For unconfined motion the mean squared displacement (MSD) of USBM exhibits an ultraslow, logarithmic growth as function of time, in contrast to the conventional scaled Brownian motion. In a harmonic potential the MSD of USBM does not saturate but asymptotically decays inverse-proportionally to time, reflecting the highly non-stationary character of the process. We show that the process is weakly non-ergodic in the sense that the time averaged MSD does not converge to the regular MSD even at long times, and for unconfined motion combines a linear lag time dependence with a logarithmic term. The weakly non-ergodic behaviour is quantified in terms of the ergodicity breaking parameter. The USBM process is also shown to be ageing: observables of the system depend on the time gap between initiation of the test particle and start of the measurement of its motion. Our analytical results are shown to agree excellently with extensive computer simulations.
Synchronization of large ensembles of oscillators is an omnipresent phenomenon observed in different fields of science like physics, engineering, life sciences, etc. The most simple setup is that of globally coupled phase oscillators, where all the oscillators contribute to a global field which acts on all oscillators. This formulation of the problem was pioneered by Winfree and Kuramoto. Such a setup gives a possibility for the analysis of these systems in terms of global variables. In this work we describe nontrivial collective dynamics in oscillator populations coupled via mean fields in terms of global variables. We consider problems which cannot be directly reduced to standard Kuramoto and Winfree models.
In the first part of the thesis we adopt a method introduced by Watanabe and Strogatz. The main idea is that the system of identical oscillators of particular type can be described by a low-dimensional system of global equations. This approach enables us to perform a complete analytical analysis for a special but vast set of initial conditions. Furthermore, we show how the approach can be expanded for some nonidentical systems. We apply the Watanabe-Strogatz approach to arrays of Josephson junctions and systems of identical phase oscillators with leader-type coupling.
In the next parts of the thesis we consider the self-consistent mean-field theory method that can be applied to general nonidentical globally coupled systems of oscillators both with or without noise. For considered systems a regime, where the global field rotates uniformly, is the most important one. With the help of this approach such solutions of the self-consistency equation for an arbitrary distribution of frequencies and coupling parameters can be found analytically in the parametric form, both for noise-free and noisy cases.
We apply this method to deterministic Kuramoto-type model with generic coupling and an ensemble of spatially distributed oscillators with leader-type coupling. Furthermore, with the proposed self-consistent approach we fully characterize rotating wave solutions of noisy Kuramoto-type model with generic coupling and an ensemble of noisy oscillators with bi-harmonic coupling.
Whenever possible, a complete analysis of global dynamics is performed and compared with direct numerical simulations of large populations.
Many chemical reactions in biological cells occur at very low concentrations of constituent molecules. Thus, transcriptional gene-regulation is often controlled by poorly expressed transcription-factors, such as E.coli lac repressor with few tens of copies. Here we study the effects of inherent concentration fluctuations of substrate-molecules on the seminal Michaelis-Menten scheme of biochemical reactions. We present a universal correction to the Michaelis-Menten equation for the reaction-rates. The relevance and validity of this correction for enzymatic reactions and intracellular gene-regulation is demonstrated. Our analytical theory and simulation results confirm that the proposed variance-corrected Michaelis-Menten equation predicts the rate of reactions with remarkable accuracy even in the presence of large non-equilibrium concentration fluctuations. The major advantage of our approach is that it involves only the mean and variance of the substrate-molecule concentration. Our theory is therefore accessible to experiments and not specific to the exact source of the concentration fluctuations.
Biological materials, in addition to having remarkable physical properties, can also change shape and volume. These shape and volume changes allow organisms to form new tissue during growth and morphogenesis, as well as to repair and remodel old tissues. In addition shape or volume changes in an existing tissue can lead to useful motion or force generation (actuation) that may even still function in the dead organism, such as in the well known example of the hygroscopic opening or closing behaviour of the pine cone. Both growth and actuation of tissues are mediated, in addition to biochemical factors, by the physical constraints of the surrounding environment and the architecture of the underlying tissue. This habilitation thesis describes biophysical studies carried out over the past years on growth and swelling mediated shape changes in biological systems. These studies use a combination of theoretical and experimental tools to attempt to elucidate the physical mechanisms governing geometry controlled tissue growth and geometry constrained tissue swelling. It is hoped that in addition to helping understand fundamental processes of growth and morphogenesis, ideas stemming from such studies can also be used to design new materials for medicine and robotics.
The non-linear behaviour of the atmospheric dynamics is not well understood and makes the evaluation and usage of regional climate models (RCMs) difficult. Due to these non-linearities, chaos and internal variability (IV) within the RCMs are induced, leading to a sensitivity of RCMs to their initial conditions (IC). The IV is the ability of RCMs to realise different solutions of simulations that differ in their IC, but have the same lower and lateral boundary conditions (LBC), hence can be defined as the across-member spread between the ensemble members.
For the investigation of the IV and the dynamical and diabatic contributions generating the IV four ensembles of RCM simulations are performed with the atmospheric regional model HIRHAM5. The integration area is the Arctic and each ensemble consists of 20 members. The ensembles cover the time period from July to September for the years 2006, 2007, 2009 and 2012. The ensemble members have the same LBC and differ in their IC only. The different IC are arranged by an initialisation time that shifts successively by six hours. Within each ensemble the first simulation starts on 1st July at 00 UTC and the last simulation starts on 5th July at 18 UTC and each simulation runs until 30th September. The analysed time period ranges from 6th July to 30th September, the time period that is covered by all ensemble members. The model runs without any nudging to allow a free development of each simulation to get the full internal variability within the HIRHAM5.
As a measure of the model generated IV, the across-member standard deviation and the across-member variance is used and the dynamical and diabatic processes influencing the IV are estimated by applying a diagnostic budget study for the IV tendency of the potential temperature developed by Nikiema and Laprise [2010] and Nikiema and Laprise [2011]. The diagnostic budget study is based on the first law of thermodynamics for potential temperature and the mass-continuity equation. The resulting budget equation reveals seven contributions to the potential temperature IV tendency.
As a first study, this work analyses the IV within the HIRHAM5. Therefore, atmospheric circulation parameters and the potential temperature for all four ensemble years are investigated. Similar to previous studies, the IV fluctuates strongly in time. Further, due to the fact that all ensemble members are forced with the same LBC, the IV depends on the vertical level within the troposphere, with high values in the lower troposphere and at 500 hPa and low values in the upper troposphere and at the surface. By the same reason, the spatial distribution shows low values of IV at the boundaries of the model domain.
The diagnostic budget study for the IV tendency of potential temperature reveals that the seven contributions fluctuate in time like the IV. However, the individual terms reach different absolute magnitudes. The budget study identifies the horizontal and vertical ‘baroclinic’ terms as the main contributors to the IV tendency, with the horizontal ‘baroclinic’ term producing and the vertical ‘baroclinic’ term reducing the IV. The other terms fluctuate around zero, because they are small in general or are balanced due to the domain average.
The comparison of the results obtained for the four different ensembles (summers 2006, 2007, 2009 and 2012) reveals that on average the findings for each ensemble are quite similar concerning the magnitude and the general pattern of IV and its contributions. However, near the surface a weaker IV is produced with decreasing sea ice extent. This is caused by a smaller impact of the horizontal 'baroclinic' term over some regions and by the changing diabatic processes, particularly a more intense reducing tendency of the IV due to condensative heating. However, it has to be emphasised that the behaviour of the IV and its dynamical and diabatic contributions are influenced mainly by complex atmospheric feedbacks and large-scale processes and not by the sea ice distribution.
Additionally, a comparison with a second RCM covering the Arctic and using the same LBCs and IC is performed. For both models very similar results concerning the IV and its dynamical and diabatic contributions are found. Hence, this investigation leads to the conclusion that the IV is a natural phenomenon and is independent from the applied RCM.
We have investigated the electrochemical, spectroscopic and electroluminescent properties of a family of aza-aromatic complexes of ruthenium of type [RuII(bpy/phen)2(L)]2+ (4d6) with three isomeric L ligands, where, bpy = 2,2′-bipyridine, phen = 1,10-phenanthroline and the L ligands are 3-(2-pyridyl)[1,2,4]triazolo[1,5-a]pyridine (L1), 3-(2-pyridyl[1,2,3])triazolo[1,5-a]pyridine (L2) and 2-(2-pyridyl)[1,2,4]triazolo[1,5-a]pyridine (L3). The complexes display two bands in the visible region near 410–420 and 440–450 nm. The complexes are diamagnetic and show well defined 1H NMR lines. They are electroactive in acetonitrile solution and exhibit a well defined RuII/RuIII couple near 1.20 to 1.30 V and −1.40 to −1.50 V due to ligand reduction versus Saturated Calomel Electrode (SCE). The solutions are also luminescent, with peaks are near 600 nm. All the complexes are electroluminescent in nature with peaks lying near 580 nm. L1 and L3 ligated complexes with two bpy co-ligands show weak photoluminescence (PL) but stronger electroluminescence (EL) compared to corresponding L2 ligated analogues.
Stochastic Wilson
(2015)
We consider a simple Markovian class of the stochastic Wilson–Cowan type models of neuronal network dynamics, which incorporates stochastic delay caused by the existence of a refractory period of neurons. From the point of view of the dynamics of the individual elements, we are dealing with a network of non-Markovian stochastic two-state oscillators with memory, which are coupled globally in a mean-field fashion. This interrelation of a higher-dimensional Markovian and lower-dimensional non-Markovian dynamics is discussed in its relevance to the general problem of the network dynamics of complex elements possessing memory. The simplest model of this class is provided by a three-state Markovian neuron with one refractory state, which causes firing delay with an exponentially decaying memory within the two-state reduced model. This basic model is used to study critical avalanche dynamics (the noise sustained criticality) in a balanced feedforward network consisting of the excitatory and inhibitory neurons. Such avalanches emerge due to the network size dependent noise (mesoscopic noise). Numerical simulations reveal an intermediate power law in the distribution of avalanche sizes with the critical exponent around −1.16. We show that this power law is robust upon a variation of the refractory time over several orders of magnitude. However, the avalanche time distribution is biexponential. It does not reflect any genuine power law dependence.
For the calculation of the work in an irreversible pressure-volume change, we propose approxima-tions, which in contrast to the usual representation in the literature reflect the work performed during expansion and compression symmetrically. The calculations are based on the Reversible-Share-Theorem: Is used the force to overcome for calculating the work, so it captures only the configurational reversible work share.
Stochastic Wilson
(2015)
We consider a simple Markovian class of the stochastic Wilson–Cowan type models of neuronal network dynamics, which incorporates stochastic delay caused by the existence of a refractory period of neurons. From the point of view of the dynamics of the individual elements, we are dealing with a network of non-Markovian stochastic two-state oscillators with memory, which are coupled globally in a mean-field fashion. This interrelation of a higher-dimensional Markovian and lower-dimensional non-Markovian dynamics is discussed in its relevance to the general problem of the network dynamics of complex elements possessing memory. The simplest model of this class is provided by a three-state Markovian neuron with one refractory state, which causes firing delay with an exponentially decaying memory within the two-state reduced model. This basic model is used to study critical avalanche dynamics (the noise sustained criticality) in a balanced feedforward network consisting of the excitatory and inhibitory neurons. Such avalanches emerge due to the network size dependent noise (mesoscopic noise). Numerical simulations reveal an intermediate power law in the distribution of avalanche sizes with the critical exponent around −1.16. We show that this power law is robust upon a variation of the refractory time over several orders of magnitude. However, the avalanche time distribution is biexponential. It does not reflect any genuine power law dependence.
The origin of cosmic rays was the subject of several studies for over a century. The investigations done within this dissertation are one small step to shed some more light on this mystery.
Locating the sources of cosmic rays is not trivial due to the interstellar magnetic field. However, the Hillas criterion allows us to arrive at the conclusion that supernova remnants are our main suspect for the origin of galactic cosmic rays. The mechanism by which they are accelerating particles is found within the field of shock physics as diffusive shock acceleration. To allow particles to enter this process also known as Fermi acceleration pre-acceleration processes like shock surfing acceleration and shock drift acceleration are necessary. Investigating the processes happening in the plasma shocks of supernova remnants is possible by utilising a simplified model which can be simulated on a computer using Particle-in-Cell simulations.
We developed a new and clean setup to simulate the formation of a double shock, i.e., consisting of a forward and a reverse shock and a contact discontinuity, by the collision of two counter-streaming plasmas, in which a magnetic field can be woven into. In a previous work, we investigated the processes at unmagnetised and at magnetised parallel shocks, whereas in the current work, we move our investigation on to magnetised perpendicular shocks.
Due to a much stronger confinement of the particles to the collision region the perpendicular shock develops much faster than the parallel shock. On the other hand, this leads to much weaker turbulence. We are able to find indications for shock surfing acceleration and shock drift acceleration happening at the two shocks leading to populations of pre-accelerated particles that are suitable as a seed population to be injected into further diffusive shock acceleration to be accelerated to even higher energies. We observe the development of filamentary structures in the shock ramp of the forward shock, but not at the reverse shock. This leads to the conclusion that the development of such structures in the shock ramp of quasi-perpendicular collisionless shocks might not necessarily be determined by the existence of a critical sonic Mach number but by a critical shock speed.
The results of the investigations done within this dissertation might be useful for further studies of oblique shocks and for studies using hybrid or magnetohydrodynamic simulations. Together with more sophisticated observational methods, these studies will help to bring us closer to an answer as to how particles can be accelerated in supernova remnants and eventually become cosmic rays that can be detected on Earth.