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In biological cells, the long-range intracellular traffic is powered by molecular motors which transport various cargos along microtubule filaments. The microtubules possess an intrinsic direction, having a 'plus' and a 'minus' end. Some molecular motors such as cytoplasmic dynein walk to the minus end, while others such as conventional kinesin walk to the plus end. Cells typically have an isopolar microtubule network. This is most pronounced in neuronal axons or fungal hyphae. In these long and thin tubular protrusions, the microtubules are arranged parallel to the tube axis with the minus ends pointing to the cell body and the plus ends pointing to the tip. In such a tubular compartment, transport by only one motor type leads to 'motor traffic jams'. Kinesin-driven cargos accumulate at the tip, while dynein-driven cargos accumulate near the cell body. We identify the relevant length scales and characterize the jamming behaviour in these tube geometries by using both Monte Carlo simulations and analytical calculations. A possible solution to this jamming problem is to transport cargos with a team of plus and a team of minus motors simultaneously, so that they can travel bidirectionally, as observed in cells. The presumably simplest mechanism for such bidirectional transport is provided by a 'tug-of-war' between the two motor teams which is governed by mechanical motor interactions only. We develop a stochastic tug-of-war model and study it with numerical and analytical calculations. We find a surprisingly complex cooperative motility behaviour. We compare our results to the available experimental data, which we reproduce qualitatively and quantitatively.
For the first time stabilizer-free vinylidene fluoride (VDF) polymerizations were carried out in homogeneous phase with supercritical CO₂. Polymerizations were carried out at 140°C, 1500 bar and were initiated with di-tert-butyl peroxide (DTBP). In-line FT-NIR (Fourier Transform- Near Infrared) spectroscopy showed that complete monomer conversion may be obtained. Molecular weights were determined via size-exclusion chromatography (SEC) and polymer end group analysis by 1H-NMR spectroscopy. The number average molecular weights were below 104 g∙mol−1 and polydispersities ranged from 3.1 to 5.7 depending on DTBP and VDF concentration. To allow for isothermal reactions high CO₂ contents ranging from 61 to 83 wt.% were used. The high-temperature, high-pressure conditions were required for homogeneous phase polymerization. These conditions did not alter the amount of defects in VDF chaining. Scanning electron microscopy (SEM) indicated that regular stack-type particles were obtained upon expansion of the homogeneous polymerization mixture. To reduce the required amount of initiator, further VDF polymerizations using chain transfer agents (CTAs) to control molecular weights were carried out in homogeneous phase with supercritical carbon dioxide (scCO₂) at 120 °C and 1500 bar. Using perfluorinated hexyl iodide as CTA, polymers of low polydispersity ranging from 1.5 to 1.2 at the highest iodide concentration of 0.25 mol·L-1 were obtained. Electrospray ionization- mass spectroscopy (ESI-MS) indicates the absence of initiator derived end groups, supporting livingness of the system. The “livingness” is based on the labile C-I bond. However, due to the weakness of the C-I bond perfluorinated hexyl iodide also contributes to initiation. To allow for kinetic analyses of VDF polymerizations the CTA should not contribute to initiation. Therefore, additional CTAs were applied: BrCCl3, C6F13Br and C6F13H. It was found that C6F13H does not contribute to initiation. At 120°C and 1500 bar kp/kt0.5~ 0.64 (L·mol−1·s−1)0.5 was derived. The chain transfer constant (CT) at 120°C has been determined to be 8·10−1, 9·10−2 and 2·10−4 for C6F13I, C6F13Br and C6F13H, respectively. These CT values are associated with the bond energy of the C-X bond. Moreover, the labile C-I bond allows for functionalization of the polymer to triazole end groups applying click reactions. After substitution of the iodide end group by an azide group 1,3 dipolar cycloadditions with alkynes yield polymers with 1,2,3 triazole end groups. Using symmetrical alkynes the reactions may be carried out in the absence of any catalyst. This end-functionalized poly (vinylidene fluoride) (PVDF) has higher thermal stability as compared to the normal PVDF. PVDF samples from homogeneous phase polymerizations in supercritical CO₂ and subsequent expansion to ambient conditions were analyzed with respect to polymer end groups, crystallinity, type of polymorphs and morphology. Upon expansion the polymer was obtained as white powder. Scanning electron microscopy (SEM) showed that DTBP derived polymer end groups led to stack-type particles whereas sponge- or rose-type particles were obtained in case of CTA fragments as end groups. Fourier-Transform Infrared spectroscopy and wide angle X-ray diffraction indicated that the type of polymorph, α or β crystal phase was significantly affected by the type of end group. The content of β-phase material, which is responsible for piezoelectricity of PVDF, is the highest for polymer with DTBP-derived end groups. In addition, the crystallinity of the material, as determined via differential scanning calorimetry is affected by the end groups and polymer molecular weights. For example, crystallinity ranges from around 26 % for DTBP-derived end groups to a maximum of 62 % for end groups originating from perfluorinated hexyl iodide for polymers with Mn ~2200 g·mol–1. Expansion of the homogeneous polymerization mixture results in particle formation by a non-optimized RESS (Rapid Expansion from Supercritical Solution) process. Thus, it was tested how polymer end groups affect the particles size distribution obtained from RESS process under controlled conditions (T = 50°C and P = 200 bar). In all RESS experiments, small primary PVDF with diameters less than 100 nm without the use of liquid solvents, surfactants, or other additives were produced. A strong correlation between particle size and particle size distribution with polymer end groups and molecular weight of the original material was observed. The smallest particles were found for RESS of PVDF with Mn~ 4000 g·mol–1 and PFHI (C6F13I) - derived end groups.
The effect of moderate rates of nitrogen deposition on ground floor vegetation is poorly predicted by uncontrolled surveys or fertilization experiments using high rates of nitrogen (N) addition. We compared the temporal trends of ground floor vegetation in permanent plots with moderate (7–13 kg ha−1 year−1) and lower bulk N deposition (4–6 kg ha−1 year−1) in southern Sweden during 1982–1998. We examined whether trends differed between growth forms (vascular plants and bryophytes) and vegetation types (three types of coniferous forest, deciduous forest, and bog). Trends of site-standardized cover and richness varied among growth forms, vegetation types, and deposition regions. Cover in spruce forests decreased at the same rate with both moderate and low deposition. In pine forests cover decreased faster with moderate deposition and in bogs cover decreased faster with low deposition. Cover of bryophytes in spruce forests increased at the same rate with both moderate and low deposition. In pine forests cover decreased faster with moderate deposition and in bogs and deciduous forests there was a strong non-linear increase with moderate deposition. The trend of number of vascular plants was constant with moderate and decreased with low deposition. We found no trend in the number of bryophyte species. We propose that the decrease of cover and number with low deposition was related to normal ecosystem development (increased shading), suggesting that N deposition maintained or increased the competitiveness of some species in the moderate-deposition region. Deposition had no consistent negative effect on vegetation suggesting that it is less important than normal successional processes.
The emergence of information extraction (IE) oriented pattern engines has been observed during the last decade. Most of them exploit heavily finite-state devices. This paper introduces ExPRESS – a new extraction pattern engine, whose rules are regular expressions over flat feature structures. The underlying pattern language is a blend of two previously introduced IE oriented pattern formalisms, namely, JAPE, used in the widely known GATE system, and the unificationbased XTDL formalism used in SProUT. A brief and technical overview of ExPRESS, its pattern language and the pool of its native linguistic components is given. Furthermore, the implementation of the grammar interpreter is addressed too.
Auszug: Seit langem ist bekannt, dass Kinder mit Sprachentwicklungsstörungen meist schon in einem frühen Stadium ihrer Sprachentwicklung auffallen: die ersten Wörter werden verspätet produziert, der Wortschatz wächst langsamer an, der Vokabularspurt setzt verzögert ein oder bleibt aus, so dass das produktive Vokabular mit zwei Jahren weniger als 50 Wörter umfasst. Außerdem treten keine Wortkombinationen auf. Obwohl bei nahezu jeder Sprachentwicklungs-störung retrospektiv derartige frühe Anzeichen auszumachen sind, mündet andererseits nicht jede frühe Verzögerung in eine anhaltende Störung. Diese Beobachtung hat Anlass zu einer regen Forschungstätigkeit gegeben. Im Zentrum steht die Frage, anhand welcher Kriterien sich der weitere Entwicklungsverlauf eines sprachlich verzögerten Kindes prognostizieren lässt. Der Forschungsstand zu diesem Bereich wurde an anderer Stelle bereits ausführlich beschrieben (z. B. in Kauschke 2000, 2003, 2006a). In diesem Beitrag möchte ich die Entwicklungswege dieser Population anhand aktueller Studien skizzieren, die Problematik der Prädiktion ansprechen und eine Studie über Sprachentwicklungsverläufe im dritten Lebensjahr vorstellen, in der ungestörte Kinder und sprachlich verzögerte längsschnittlich beobachtet wurden. Es folgen Überlegungen zur Therapienotwendigkeit und Therapiekonzeption, die durch die Darstellung eines exemplarischen Therapieverlaufs bei einem Einzelfall illustriert werden. [...]
Auszug: Etwa zwei Drittel aller Ausgaben der Krankenkassen für das Heilmittel Sprachtherapie betreffen ein Klientel in der Altersgruppe der 0- bis 15-jährigen (GVK-HIS Bundesrepublik 2007). Spracherwerbsstörungen stellen das häufigste Entwicklungsrisiko bei Kindern dar. Ca. 18% der einzuschulenden Kinder weisen einen Förderbedarf im Entwicklungsbereich Sprache auf (Tollkühn 2001) und ca. 18% der 6-jährigen Jungen erhalten nach dem Heilmittelbericht 2006 Sprachtherapieverordnungen (Schröder & Waltersbacher 2006). Die überwiegende Mehrheit erhält diese Verordnung aufgrund der Zuweisung des Indikationsschlüssels „Störungen der Sprache vor Abschluss der Sprachentwicklung“. Darunter fallen v.a. Kinder mit einer primären Spracherwerbsstörung, für deren Art und Ausmaß keine Hörstörung, keine Intelligenzbeeinträchtigung, keine neurologische Schädigung oder soziale Deprivation verantwortlich gemacht werden kann. Für diese besondere Entwicklungssituation wird die Diagnose „Spezifische Spracherwerbsstörung (SSES)“ vergeben (Grimm 2003; Dannenbauer 2002). [...]
Auszug: Aphasien sind variable Sprachstörungen, die auf umschriebene Hirnläsionen zurückführbar sind und die Produktion und Verständnis separat oder kombiniert betreffen (Weniger 2003). Hierbei wird das klinische Syndrom oft mit der Lokalisation der morphologischen Gehirndefekte (z. B. durch Hirn-infarkte oder -blutungen oder Tumoren) korreliert. Sprachkompetenz gilt in erster Linie als eine Leistung des Kortex, jedoch wurden v. a. im Zuge sich verbessernder bildgebender Verfahren aphasische Syndrome auch nach Läsionen subkortikaler Hirnregionen, insbesondere der Basalganglien und des Thalamus nachgewiesen (Wallesch & Papagno 1988; Friston et al. 1993; Nadeau & Crosson 1997; Zoppelt & Daum 2003; DeWitte et al. 2006; Wahl in Druck). Diese Strukturen liegen in der Tiefe des Gehirns und kommunizieren über weit gefächerte Faserverbindungen mit dem Kortex. In erster Linie werden den Basalganglien senso-motorische Kontrollfunktionen zugewiesen (Alexander et al. 1986). Diverse Erkrankungen, die durch Störungen physiologischer Bewegungsabläufe gekennzeichnet sind (z. B. Morbus Parkinson, Chorea Huntington), werden auf Funktionsdefekte dieser Strukturen zurückgeführt. Hierbei wurde der Thalamus häufig als Relais-Station des Informationsaustauschs zwischen anatomisch entfernten Arealen des Nervensystems aufgefasst. Basalganglien und Thalamus jedoch können darüber hinausgehende Funktionen, z. B. zur Bereitstellung, Aufrechterhaltung und Auslenkung von Aufmerksamkeit bei der Bearbeitung kognitiver Aufgaben, zugesprochen werden (Cavedini et al. 2006; Piguet et al. 2006; Klostermann et al. 2006; Marzinzik et al. 2008). [...]
Krise in Pakistan
(2008)
Atomare, biologische und chemische Waffen bedrohen das Überleben der Menschheit. Friedens- und Konfliktforscher Wolfgang Kötter aus Potsdam untersucht die differenzierten Ergebnisse bei der Beseitigung dieser Gefahr. Während die chemische Abrüstung, wenn auch mit Verzögerungen, voran kommt, fehlt dem Verbot der B-Waffen ein wirksames Kontrollinstrument. Atomare Waffen erleben sogar eine Renaissance und das nukleare Nichtverbreitungsregime droht zu zerbrechen.
Die Arbeit beschreibt die Analyse von Beobachtungen zweier Sonnenflecken in zweidimensionaler Spektro-Polarimetrie. Die Daten wurden mit dem Fabry-Pérot-Interferometer der Universität Göttingen am Vakuum-Turm-Teleskop auf Teneriffa erfasst. Von der aktiven Region NOAA 9516 wurde der volle Stokes-Vektor des polarisierten Lichts in der Absorptionslinie bei 630,249 nm in Einzelaufnahmen beobachtet, und von der aktiven Region NOAA 9036 wurde bei 617,3 nm Wellenlänge eine 90-minütige Zeitserie des zirkular polarisierten Lichts aufgezeichnet. Aus den reduzierten Daten werden Ergebniswerte für Intensität, Geschwindigkeit in Beobachtungsrichtung, magnetische Feldstärke sowie verschiedene weitere Plasmaparameter abgeleitet. Mehrere Ansätze zur Inversion solarer Modellatmosphären werden angewendet und verglichen. Die teilweise erheblichen Fehlereinflüsse werden ausführlich diskutiert. Das Frequenzverhalten der Ergebnisse und Abhängigkeiten nach Ort und Zeit werden mit Hilfe der Fourier- und Wavelet-Transformation weiter analysiert. Als Resultat lässt sich die Existenz eines hochfrequenten Bandes für Geschwindigkeitsoszillationen mit einer zentralen Frequenz von 75 Sekunden (13 mHz) bestätigen. In größeren photosphärischen Höhen von etwa 500 km entstammt die Mehrheit der damit zusammenhängenden Schockwellen den dunklen Anteilen der Granulen, im Unterschied zu anderen Frequenzbereichen. Die 75-Sekunden-Oszillationen werden ebenfalls in der aktiven Region beobachtet, vor allem in der Lichtbrücke. In den identifizierten Bändern oszillatorischer Power der Geschwindigkeit sind in einer dunklen, penumbralen Struktur sowie in der Lichtbrücke ausgeprägte Strukturen erkennbar, die sich mit einer Horizontalgeschwindigkeit von 5-8 km/s in die ruhige Sonne bewegen. Diese zeigen einen deutlichen Anstieg der Power, vor allem im 5-Minuten-Band, und stehen möglicherweise in Zusammenhang mit dem Phänomen der „Evershed-clouds“. Eingeschränkt durch ein sehr geringes Signal-Rausch-Verhältnis und hohe Fehlereinflüsse werden auch Magnetfeldvariationen mit einer Periode von sechs Minuten am Übergang von Umbra zu Penumbra in der Nähe einer Lichtbrücke beobachtet. Um die beschriebenen Resultate zu erzielen, wurden bestehende Visualisierungsverfahren der Frequenzanalyse verbessert oder neu entwickelt, insbesondere für Ergebnisse der Wavelet-Transformation.
Die Zukunft Osteuropas entscheidet sich im Spannungsfeld zwischen Russland und der EU. Die dortigen Staaten lösen sich aus der einseitigen Abhängigkeit eines erstarkten und seine Interessen im postsowjetischen Raum verteidigenden Russland. Ob die EU diese Chance in Osteuropa nutzen kann, hängt davon ab, ob sich die Mitgliedstaaten bereitfinden, ihre wirtschaftlichen und geopolitischen Interessen in der Region gemeinsam zu verfolgen.
This paper describes a two-level formalism where feature structures are used in contextual rules. Whereas usual two-level grammars describe rational sets over symbol pairs, this new formalism uses tree structured regular expressions. They allow an explicit and precise definition of the scope of feature structures. A given surface form may be described using several feature structures. Feature unification is expressed in contextual rules using variables, like in a unification grammar. Grammars are compiled in finite state multi-tape transducers.
Since Harris’ parser in the late 50s, multiword units have been progressively integrated in parsers. Nevertheless, in the most part, they are still restricted to compound words, that are more stable and less numerous. Actually, language is full of semi-fixed expressions that also form basic semantic units: semi-fixed adverbial expressions (e.g. time), collocations. Like compounds, the identification of these structures limits the combinatorial complexity induced by lexical ambiguity. In this paper, we detail an experiment that largely integrates these notions in a finite-state procedure of segmentation into super-chunks, preliminary to a parser.We show that the chunker, developped for French, reaches 92.9% precision and 98.7% recall. Moreover, multiword units realize 36.6% of the attachments within nominal and prepositional phrases.
Finite state methods for natural language processing often require the construction and the intersection of several automata. In this paper, we investigate the question of determining the best order in which these intersections should be performed. We take as an example lexical disambiguation in polarity grammars. We show that there is no efficient way to minimize the state complexity of these intersections.
We present an algorithm that computes a function that assigns consecutive integers to trees recognized by a deterministic, acyclic, finite-state, bottom-up tree automaton. Such function is called minimal perfect hashing. It can be used to identify trees recognized by the automaton. Its value may be seen as an index in some other data structures. We also present an algorithm for inverted hashing.
In this work an extension of CSSR algorithm using Maximum Entropy Models is introduced. Preliminary experiments to perform Named Entity Recognition with this new system are presented.
Chloroplasts as bioreactors : high-yield production of active bacteriolytic protein antibiotics
(2008)
Plants, more precisely their chloroplasts with their bacterial-like expression machinery inherited from their cyanobacterial ancestors, can potentially offer a cheap expression system for proteinaceous pharmaceuticals. This system would be easily scalable and provides appropriate safety due to chloroplasts maternal inheritance. In this work, it was shown that three phage lytic enzymes (Pal, Cpl-1 and PlyGBS) could be successfully expressed at very high levels and with high stability in tobacco chloroplasts. PlyGBS expression reached an amount of foreign protein accumulation (> 70% TSP) that has never been obtained before. Although the high expression levels of PlyGBS caused a pale green phenotype with retarded growth, presumably due to exhaustion of plastid protein synthesis capacity, development and seed production were not impaired under greenhouse conditions. Since Pal and Cpl-1 showed toxic effects when expressed in E. coli, a special plastid transformation vector (pTox) was constructed to allow DNA amplification in bacteria. The construction of the pTox transformation vector allowing a recombinase-mediated deletion of an E. coli transcription block in the chloroplast, leading to an increase of foreign protein accumulation to up to 40% of TSP for Pal and 20% of TSP for Cpl-1. High dose-dependent bactericidal efficiency was shown for all three plant-derived lytic enzymes using their pathogenic target bacteria S. pyogenes and S. pneumoniae. Confirmation of specificity was obtained for the endotoxic proteins Pal and Cpl-1 by application to E. coli cultures. These results establish tobacco chloroplasts as a new cost-efficient and convenient production platform for phage lytic enzymes and address the greatest obstacle for clinical application. The present study is the first report of lysin production in a non-bacterial system. The properties of chloroplast-produced lysins described in this work, their stability, high accumulation rate and biological activity make them highly attractive candidates for future antibiotics.