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A lamin in lower eukaryotes?
(2012)
Lamins are the major components of the nuclear lamina and serve not only as a mechanical support, but are also involved in chromatin organization, epigenetic regulation, transcription and mitotic events. Despite these universal tasks, lamins have so far been found only in metazoans. Yet, recently we have identified Dictyostelium NE81 as the first lamin-like protein in a lower eukaryote. Based on the current knowledge, we draw a model for nuclear envelope organization in Dictyostelium in this Extra View and we review the experimental data that justified this classification. Furthermore we provide unpublished data underscoring the requirement of posttranslational CaaX-box processing for proper protein localization at the nuclear envelope. Sequence comparison of NE81 sequences from four Dictyostelia with bona fide lamins illustrates the evolutional relationship between these proteins. Under certain conditions these usually unicellular social amoebae congregate to form a multicellular body. We propose that the evolution of the lamin-like NE81 went along with the invention of multicellularity.
Aus dem Inhalt:
- Die Rolle Nationaler Menschenrechtsinstitutionen bei der Umsetzung der UN-Leitprinzipien für Wirtschaft
und Menschenrechte: Paradoxien und Potenziale
- Lehrbuchbeispiel des Versagens: Die Schutzverantwortung und die Rohingya in Myanmar
- Rechtsfragen der Umsetzung von Urteilen des Europäischen Gerichtshofs für Menschenrechte
Am 25. und 26. Juni 2004 fand die sechste Konferenz des Forschungskreises Vereinte Nationen an der Universität Potsdam statt. Die Konferenz befaßte sich mit dem Thema „Integrative Konzepte in der Reform der Vereinten Nationen". Kennzeichnend für die „Potsdamer UNO-Konferenzen", die traditionell am letzten Wochenende im Juni veranstaltet werden, sind die Verbindung von Wissenschaft und Praxis auf der einen Seite und die Beteiligung unterschiedlicher Disziplinen auf der anderen. Sieben Referate beschäftigten sich mit bisher nicht oder nicht genügend in der Arbeit der Vereinten Nationen einbezogenen Aspekten bei der Struktur-Reform. Die nachstehend abgedruckten sechs Beiträge - von Dr. Jochen Prantl, der zum Thema „Informelle Staatengruppen als Instrument zur Konfliktregulierung: Auswirkungen auf die Arbeitsweise des Sicherheitsrates der Vereinten Nationen" referiert hatte, lag bei der Drucklegung der Broschüre kein Manuskript vor - und die zugehörigen Diskussionen, die hier zusammengefaßt wiedergegeben werden, geben ein anschauliches Bild von der Komplexität der Aufgabe „UN-Reform". Die damit verbundenen Fragen, die für das zukünftige Funktionieren der Vereinten Nationen, aber auch für das Klima innerhalb der internationalen Gemeinschaft sehr wichtig sind, werden in dieser Dokumentation diskutiert. Die im Forschungskreis vertretene deutschsprachige UN-Forschung machte auf der Konferenz deutlich, daß man zu kurz greift, wenn sich die Reformdiskussion auf den ständigen Sitz für die Bundesrepublik Deutschland im Sicherheitsrat beschränkt. Der Forschungskreis möchte mit dieser Broschüre allen Interessierten die Möglichkeit geben, andere, nicht minder wichtige Aspekte dieser Diskussion kennenzulernen. Der Forschungskreis dankt der Juristischen Fakultät der Universität Potsdam für die Gastfreundschaft und dem MenschenRechtsZentrum der Universität Potsdam für die Kooperation bei der Organisation der Konferenz.
Polyanion-polycation complex formation as a function of the position of the functional groups
(1996)
Background
The hypopharyngeal gland of worker bees contributes to the production of the royal jelly fed to queens and larvae. The gland consists of thousands of two-cell units that are composed of a secretory cell and a duct cell and that are arranged in sets of about 12 around a long collecting duct.
Results
By fluorescent staining, we have examined the morphogenesis of the hypopharyngeal gland during pupal life, from a saccule lined by a pseudostratified epithelium to the elaborate organ of adult worker bees. The hypopharyngeal gland develops as follows. (1) Cell proliferation occurs during the first day of pupal life in the hypopharyngeal gland primordium. (2) Subsequently, the epithelium becomes organized into rosette-like units of three cells. Two of these will become the secretory cell and the duct cell of the adult secretory units; the third cell contributes only temporarily to the development of the secretory units and is eliminated by apoptosis in the second half of pupal life. (3) The three-cell units of flask-shaped cells undergo complex changes in cell morphology. Thus, by mid-pupal stage, the gland is structurally similar to the adult hypopharyngeal gland. (4) Concomitantly, the prospective secretory cell attains its characteristic subcellular organization by the invagination of a small patch of apical membrane domain, its extension to a tube of about 100 μm in length (termed a canaliculus), and the expansion of the tube to a diameter of about 3 μm. (6) Finally, the canaliculus-associated F-actin system becomes reorganized into rings of bundled actin filaments that are positioned at regular distances along the membrane tube.
Conclusions
The morphogenesis of the secretory units in the hypopharyngeal gland of the worker bee seems to be based on a developmental program that is conserved, with slight modification, among insects for the production of dermal glands. Elaboration of the secretory cell as a unicellular seamless epithelial tube occurs by invagination of the apical membrane, its extension likely by targeted exocytosis and its expansion, and finally the reorganisation of the membrane-associated F-actin system. Our work is fundamental for future studies of environmental effects on hypopharyngeal gland morphology and development.
Background
The hypopharyngeal gland of worker bees contributes to the production of the royal jelly fed to queens and larvae. The gland consists of thousands of two-cell units that are composed of a secretory cell and a duct cell and that are arranged in sets of about 12 around a long collecting duct.
Results
By fluorescent staining, we have examined the morphogenesis of the hypopharyngeal gland during pupal life, from a saccule lined by a pseudostratified epithelium to the elaborate organ of adult worker bees. The hypopharyngeal gland develops as follows. (1) Cell proliferation occurs during the first day of pupal life in the hypopharyngeal gland primordium. (2) Subsequently, the epithelium becomes organized into rosette-like units of three cells. Two of these will become the secretory cell and the duct cell of the adult secretory units; the third cell contributes only temporarily to the development of the secretory units and is eliminated by apoptosis in the second half of pupal life. (3) The three-cell units of flask-shaped cells undergo complex changes in cell morphology. Thus, by mid-pupal stage, the gland is structurally similar to the adult hypopharyngeal gland. (4) Concomitantly, the prospective secretory cell attains its characteristic subcellular organization by the invagination of a small patch of apical membrane domain, its extension to a tube of about 100 μm in length (termed a canaliculus), and the expansion of the tube to a diameter of about 3 μm. (6) Finally, the canaliculus-associated F-actin system becomes reorganized into rings of bundled actin filaments that are positioned at regular distances along the membrane tube.
Conclusions
The morphogenesis of the secretory units in the hypopharyngeal gland of the worker bee seems to be based on a developmental program that is conserved, with slight modification, among insects for the production of dermal glands. Elaboration of the secretory cell as a unicellular seamless epithelial tube occurs by invagination of the apical membrane, its extension likely by targeted exocytosis and its expansion, and finally the reorganisation of the membrane-associated F-actin system. Our work is fundamental for future studies of environmental effects on hypopharyngeal gland morphology and development.
Background: The hypopharyngeal gland of worker bees contributes to the production of the royal jelly fed to queens and larvae. The gland consists of thousands of two-cell units that are composed of a secretory cell and a duct cell and that are arranged in sets of about 12 around a long collecting duct. Results: By fluorescent staining, we have examined the morphogenesis of the hypopharyngeal gland during pupal life, from a saccule lined by a pseudostratified epithelium to the elaborate organ of adult worker bees. The hypopharyngeal gland develops as follows. (1) Cell proliferation occurs during the first day of pupal life in the hypopharyngeal gland primordium. (2) Subsequently, the epithelium becomes organized into rosette-like units of three cells. Two of these will become the secretory cell and the duct cell of the adult secretory units; the third cell contributes only temporarily to the development of the secretory units and is eliminated by apoptosis in the second half of pupal life. (3) The three-cell units of flask-shaped cells undergo complex changes in cell morphology. Thus, by mid-pupal stage, the gland is structurally similar to the adult hypopharyngeal gland. (4) Concomitantly, the prospective secretory cell attains its characteristic subcellular organization by the invagination of a small patch of apical membrane domain, its extension to a tube of about 100 mu m in length (termed a canaliculus), and the expansion of the tube to a diameter of about 3 mu m. (6) Finally, the canaliculus-associated F-actin system becomes reorganized into rings of bundled actin filaments that are positioned at regular distances along the membrane tube. Conclusions: The morphogenesis of the secretory units in the hypopharyngeal gland of the worker bee seems to be based on a developmental program that is conserved, with slight modification, among insects for the production of dermal glands. Elaboration of the secretory cell as a unicellular seamless epithelial tube occurs by invagination of the apical membrane, its extension likely by targeted exocytosis and its expansion, and finally the reorganisation of the membrane-associated F-actin system. Our work is fundamental for future studies of environmental effects on hypopharyngeal gland morphology and development.
Neutrophil granulocytes are essential for the first host defense. After leaving the blood circulation they migrate efficiently towards sites of inflammation. They are guided by chemoattractants released from cells within the inflammatory foci. On a cellular level, directional migration is a consequence of cellular front-rear asymmetry which is induced by the concentration gradient of the chemoattractants. The generation and maintenance of this asymmetry, however, is not yet fully understood. Here we analyzed the paths of chemotacting neutrophils with different stochastic models to gain further insight into the underlying mechanisms. Wildtype chemotacting neutrophils show an anomalous superdiffusive behavior. CXCR2 blockade and TRPC6-knockout cause the tempering of temporal correlations and a reduction of chemotaxis. Importantly, such tempering is found both in vitro and in vivo. These findings indicate that the maintenance of anomalous dynamics is crucial for chemotactic behavior and the search efficiency of neutrophils.
The motility of neutrophils and their ability to sense and to react to chemoattractants in their environment are of central importance for the innate immunity. Neutrophils are guided towards sites of inflammation following the activation of G-protein coupled chemoattractant receptors such as CXCR2 whose signaling strongly depends on the activity of Ca2+ permeable TRPC6 channels. It is the aim of this study to analyze data sets obtained in vitro (murine neutrophils) and in vivo (zebrafish neutrophils) with a stochastic mathematical model to gain deeper insight into the underlying mechanisms. The model is based on the analysis of trajectories of individual neutrophils. Bayesian data analysis, including the covariances of positions for fractional Brownian motion as well as for exponentially and power-law tempered model variants, allows the estimation of parameters and model selection. Our model-based analysis reveals that wildtype neutrophils show pure superdiffusive fractional Brownian motion. This so-called anomalous dynamics is characterized by temporal long-range correlations for the movement into the direction of the chemotactic CXCL1 gradient. Pure superdiffusion is absent vertically to this gradient. This points to an asymmetric 'memory' of the migratory machinery, which is found both in vitro and in vivo. CXCR2 blockade and TRPC6-knockout cause tempering of temporal correlations in the chemotactic gradient. This can be interpreted as a progressive loss of memory, which leads to a marked reduction of chemotaxis and search efficiency of neutrophils. In summary, our findings indicate that spatially differential regulation of anomalous dynamics appears to play a central role in guiding efficient chemotactic behavior.
Ciboria ploettneriana, Schroeteria decaisneana, and S. poeltii produce morphologically very similar apothecia emerging from fallen stromatized seeds of Veronica spp., the former two on V. hederifolia agg. in temperate central Europe and S. poeltii on V. cymbalaria in mediterranean southern Europe. They are described and illustrated in detail based on fresh collections or moist chamber cultures of infected seeds. A key is provided to differentiate the three species from their teleomorphs. For the first time, connections between two teleomorphs and two Schroeteria anamorphs are reported. Members of the anamorph-typified genus Schroeteria are known as host-specific plant parasites that infect seeds of different Veronica spp. In earlier times, they were classified in the Ustilaginales (Basidiomycota), but since more than 30 years, they are referred to as false smut fungi producing smut-like chlamydospores, based on light microscopic and ultrastructural studies which referred them to the Sclerotiniaceae (Helotiales). During the present study, rDNA sequences were obtained for the first time from chlamydospores of Schroeteria bornmuelleri (on V. rubrifolia), S. decaisneana (on V. hederifolia), S. delastrina (generic type, on V. arvensis), and S. poeltii (on V. cymbalaria) and from apothecia of C. ploettneriana, S. decaisneana, and S. poeltii. As a result, the anamorph-teleomorph connection could be established for S. decaisneana and S. poeltii by a 100% ITS similarity, whereas C. ploettneriana could not be connected to a smut-like anamorph. Ciboria ploettneriana in the here-redefined sense clustered in our combined phylogenetic analyses of ITS and LSU in relationship of Sclerotinia s.l., Botrytis, and Myriosclerotinia rather than Ciboria, but its placement was not supported. Its affiliation in Ciboria was retained until a better solution is found. Also Schroeteria poeltii clustered unresolved in this relationship but with a much higher molecular distance. The remaining three Schroeteria spp. formed a strongly supported monophyletic group, here referred to as "Schroeteria core clade", which clustered with medium to high support as a sister clade of Monilinia jezoensis, a member of the Monilinia alpina group of section Disjunctoriae. We observed ITS distances of 5-6.3% among members of the Schroeteria core clade, but 13.8-14.7% between this clade and S. poeltii, which appears to be correlated with the deviating chlamydospore morphology of S. poeltii. Despite its apparent paraphyly, Schroeteria is accepted here in a wide sense as a genus distinct from Monilinia, particularly because of its very special anamorphs. A comparable heterogeneity in rDNA analyses was observed in Monilinia and other genera of Sclerotiniaceae. Such apparent heterogeneity should be met with skepticism, however, because the inclusion of protein-coding genes in phylogenetic analyses resulted in a monophyletic genus Monilinia. More sclerotiniaceous taxa should be analysed for protein-coding genes in the future, including Schroeteria. Four syntype specimens of Ciboria ploettneriana in B were reexamined in the present study, revealing a mixture of the two species growing on V. hederifolia agg. Based on its larger ascospores in comparison with S. decaisneana, a lectotype is proposed for C. ploettneriana.
Städte sind aufgrund ihrer Agglomeration von Bevölkerung, Sachwerten und Infrastrukturen in besonderem Maße von extremen Wetterereignissen wie Starkregen und Hitze betroffen. Zahlreiche Überflutungsereignisse infolge von Starkregen traten in den letzten Jahren in verschiedenen Regionen Deutschlands auf und führten nicht nur zu Schäden in zwei- bis dreistelliger Millionenhöhe, sondern auch zu Todesopfern. Und auch Hitzewellen, wie sie in den vergangenen Jahren vermehrt aufgetreten sind, bergen gesundheitliche Risiken, welche sich auch in verschiedenen Schätzungen zu Hitzetodesfällen wiederfinden.
Um diesen Risiken zu begegnen und Schäden infolge von Wetterextremen zu reduzieren, entwickeln viele Kommunen bereits Strategien und Konzepte im Kontext der Klimaanpassung und/oder setzen Anpassungsmaßnahmen um. Neben der Entwicklung und Umsetzung eigener Ideen orientieren sich Städte dabei u. a. an Leitfäden und Beispielen aus der Literatur, Erfahrungen aus anderen Städten oder an Ergebnissen aus Forschungsprojekten. Dieser Lern- und Transferprozess, der eine Übertragung von Maßnahmen oder Instrumenten der Klimaanpassung von einem Ort auf einen anderen beinhaltet, ist bislang noch unzureichend erforscht und verstanden.
Der vorliegende Bericht untersucht deshalb ebendiesen Lern- und Transferprozess zwischen sowie innerhalb von Städten sowie das Transferpotenzial konkreter Wissenstransfer-Medien, Instrumente und Maßnahmen. Damit wird das Ziel verfolgt, ein besseres Verständnis dieser Prozesse zu entwickeln und einen Beitrag zur Verbesserung des Transfers von kommunalen Klimaanpassungsaktivitäten zu leisten. Der vorliegende Inhalt baut dabei auf einer vorangegangenen Analyse des Forschungsstands zum Transfer von Policies durch Haupt et al. (2021) auf und versucht, den bereits generierten Wissensstand auf der Ebene von Policies nun um die Ebene konkreter Instrumente und Maßnahmen zu ergänzen sowie durch empirische Befunde zu ausgewählten Maßnahmen zu untermauern. Die Wissens- und Datengrundlage dieses Berichts umfasst einen Mix aus verschiedenen (Online)-Befragungen und Interviews mit Vertreter:innen relevanter Akteursgruppen, vor allem Vertreter:innen von Stadtverwaltungen, sowie den Erfahrungswerten der drei ExTrass-Fallstudienstädte Potsdam, Remscheid und Würzburg.
Nach einer Einleitung beschäftigt sich Kapitel 2 mit übergeordneten Faktoren der Übertragbarkeit bzw. des Transfers. Kapitel 2.1 bietet hierbei eine Zusammenfassung zum aktuellen Wissensstand hinsichtlich des Transfers von Policies im Bereich der städtischen Klimapolitik gemäß Haupt et al. (2021). Hier werden zentrale Kriterien für einen erfolgreichen Transfer herausgearbeitet, um einen Anknüpfungspunkt für die folgenden Inhalte und empirischen Befunde auf der Ebene konkreter Instrumente und Maßnahmen zu bieten. Kapitel 2.2 schließt hieran an und präsentiert Erkenntnisse aus einer weitreichenden Kommunalbefragung. Hierbei wurde untersucht ob und welche Klimaanpassungsmaßnahmen in den Städten bereits umgesetzt werden, welche fördernden und hemmenden Aspekte es dabei gibt und welche Erfahrungen beim Transfer von Wissen und Ideen bereits vorliegen.
Kapitel 3 untersucht die Rolle verschiedener Medien des Wissenstransfers und widmet sich dabei beispielhaft Leitfäden zur Klimaanpassung und Maßnahmensteckbriefen. Kapitel 3.1 beantwortet dabei Fragen nach der Relevanz und Zugänglichkeit von Leitfäden, deren Stärken und Schwächen, sowie konkreten Anforderungen vonseiten befragter Personen. Außerdem werden acht ausgewählte Leitfäden vorgestellt und komprimiert auf ihre Transferpotenziale hin eingeschätzt. Kapitel 3.2 betrachtet Maßnahmensteckbriefe als Medien des Wissenstransfers und arbeitet zentrale Aspekte für einen praxisrelevanten inhaltlichen Aufbau heraus, um basierend darauf einen Muster-Maßnahmensteckbrief für Klimaanpassungsmaßnahmen zu entwickeln und vorzuschlagen.
Kapitel 4 beschäftigt sich mit sehr konkreten kommunalen Erfahrungen rund um den Transfer von sieben ausgewählten Instrumenten und Maßnahmen und bietet zahlreiche empirische Befunde aus den Kommunen, basierend auf der Kommunalbefragung, verschiedenen Interviews und den Erfahrungen aus der Projektarbeit. Die folgenden sieben Instrumente und Maßnahmen wurden ausgewählt, um eine große Breite städtischer Klimaanpassungsaktivitäten zu betrachten: 1) Klimafunktionskarten (Stadtklimakarten), 2) Starkregengefahrenkarten, 3) Checklisten zur Klimaanpassung in der Bauleitplanung, 4) Verbot von Schottergärten in Bebauungsplänen, 5) Fassadenbegrünungen, 6) klimaangepasste Gestaltung von Grün- und Freiflächen sowie 7) Handlungsempfehlungen für Betreuungseinrichtungen zum Umgang mit Hitze und Starkregen. Für jede dieser Klimaanpassungsaktivitäten wird auf Ebene der Kommunen Ziel, Verbreitung und Erscheinungsformen, Umsetzung anhand konkreter Beispiele, fördernde und hemmende Faktoren sowievorliegende Erfahrungen zu und Hinweisen auf Transfer dargestellt.
Kapitel 5 schließt den vorliegenden Bericht ab, indem zentrale Transfer-Barrieren aus den gewonnenen Erkenntnissen aufgegriffen und entsprechende Empfehlungen an verschiedene Ebenen der Politik ausgesprochen werden. Diese Empfehlungen zur Verbesserung des Transfers von klimaanpassungsrelevanten Instrumenten, Strategien und Maßnahmen umfassen 1) die Verbesserung des Austauschs zwischen verschiedenen Städten, 2) die Verbesserung der Zugänglichkeit von Wissen und Erfahrungen, 3) die Schaffung von Vernetzungsstrukturen innerhalb von Städten sowie 4) bestehende Wissenslücken zu schließen.
Die Autor:innen des vorliegenden Berichts hoffen, durch die vielfältigen Untersuchungsaspekte einen Beitrag zum besseren Verständnis der Lern- und Transferprozesse und zur Verbesserung des Transfers kommunaler Klimaanpassungsaktivitäten zu leisten.
Aufgrund der hohen Konzentration von Bevölkerung, ökonomischen Werten und Infrastrukturen können Städte stark von extremen Wetterereignissen getroffen werden. Insbesondere Hitzewellen und Überflutungen in Folge von Starkregen verursachen in Städten immense gesundheitliche und finanzielle Schäden. Um Schäden zu verringern oder gar zu vermeiden, ist es notwendig, entsprechende Vorsorge- und Klimaanpassungsmaßnahmen zu implementieren.
Im Projekt „Urbane Resilienz gegenüber extremen Wetterereignissen – Typologien und Transfer von Anpassungsstrategien in kleinen Großstädten und Mittelstädten” (ExTrass) lag der Fokus auf den beiden extremen Wetterereignissen Hitze und Starkregen sowie auf kleineren Großstädten (100.000 bis 500.000 Einwohner:innen) und kreisfreien Mittelstädten mit mehr als 50.000 Einwohner:innen. Im Projekt wurde die Stärkung der Klimaresilienz als Verbesserung der Fähigkeiten von Städten, aus vergangenen Ereignissen zu lernen sowie sich an antizipierte Gefahren anzupassen, verstanden. Klimaanpassung wurde demnach als ein Prozess aufgefasst, der durch die Umsetzung von potenziell schadensreduzierenden Maßnahmen beschreib- und operationalisierbar wird.
Das Projekt hatte zwei Ziele: Erstens sollte die Klimaresilienz in den drei Fallstudienstädten Potsdam, Remscheid und Würzburg messbar gestärkt werden. Zweitens sollten Transferpotenziale zwischen Groß- und Mittelstädten in Deutschland identifiziert und besser nutzbar gemacht werden, damit die Wirkung von Pilotvorhaben über die direkt involvierten Städte hinausgehen kann. Im Projekt standen folgende vier Leitfragen im Fokus:
• Wie verbreitet sind Klimaanpassungsaktivitäten in Großstädten und größeren kreisfreien Mittelstädten in Deutschland?
• Welche hemmenden und begünstigenden Faktoren beeinflussen die Klimaanpassung?
• Welche Maßnahmen der Klimaanpassung werden tatsächlich umgesetzt, und wie kann die Umsetzung verbessert werden? Was behindert?
• Inwiefern lassen sich Beispiele guter Praxis auf andere Städte übertragen, adaptieren oder weiterentwickeln?
Die Hauptergebnisse zu diesen Fragestellungen sind im vorliegenden Bericht zusammengefasst.
Insight into how environmental change determines the production and distribution of cyanobacterial toxins is necessary for risk assessment. Management guidelines currently focus on hepatotoxins (microcystins). Increasing attention is given to other classes, such as neurotoxins (e.g., anatoxin-a) and cytotoxins (e.g., cylindrospermopsin) due to their potency. Most studies examine the relationship between individual toxin variants and environmental factors, such as nutrients, temperature and light. In summer 2015, we collected samples across Europe to investigate the effect of nutrient and temperature gradients on the variability of toxin production at a continental scale. Direct and indirect effects of temperature were the main drivers of the spatial distribution in the toxins produced by the cyanobacterial community, the toxin concentrations and toxin quota. Generalized linear models showed that a Toxin Diversity Index (TDI) increased with latitude, while it decreased with water stability. Increases in TDI were explained through a significant increase in toxin variants such as MC-YR, anatoxin and cylindrospermopsin, accompanied by a decreasing presence of MC-LR. While global warming continues, the direct and indirect effects of increased lake temperatures will drive changes in the distribution of cyanobacterial toxins in Europe, potentially promoting selection of a few highly toxic species or strains.
Under ongoing climate change and increasing anthropogenic activity, which continuously challenge ecosystem resilience, an in-depth understanding of ecological processes is urgently needed. Lakes, as providers of numerous ecosystem services, face multiple stressors that threaten their functioning. Harmful cyanobacterial blooms are a persistent problem resulting from nutrient pollution and climate-change induced stressors, like poor transparency, increased water temperature and enhanced stratification. Consistency in data collection and analysis methods is necessary to achieve fully comparable datasets and for statistical validity, avoiding issues linked to disparate data sources. The European Multi Lake Survey (EMLS) in summer 2015 was an initiative among scientists from 27 countries to collect and analyse lake physical, chemical and biological variables in a fully standardized manner. This database includes in-situ lake variables along with nutrient, pigment and cyanotoxin data of 369 lakes in Europe, which were centrally analysed in dedicated laboratories. Publishing the EMLS methods and dataset might inspire similar initiatives to study across large geographic areas that will contribute to better understanding lake responses in a changing environment.
Insight into how environmental change determines the production and distribution of cyanobacterial toxins is necessary for risk assessment. Management guidelines currently focus on hepatotoxins (microcystins). Increasing attention is given to other classes, such as neurotoxins (e.g., anatoxin-a) and cytotoxins (e.g., cylindrospermopsin) due to their potency. Most studies examine the relationship between individual toxin variants and environmental factors, such as nutrients, temperature and light. In summer 2015, we collected samples across Europe to investigate the effect of nutrient and temperature gradients on the variability of toxin production at a continental scale. Direct and indirect effects of temperature were the main drivers of the spatial distribution in the toxins produced by the cyanobacterial community, the toxin concentrations and toxin quota. Generalized linear models showed that a Toxin Diversity Index (TDI) increased with latitude, while it decreased with water stability. Increases in TDI were explained through a significant increase in toxin variants such as MC-YR, anatoxin and cylindrospermopsin, accompanied by a decreasing presence of MC-LR. While global warming continues, the direct and indirect effects of increased lake temperatures will drive changes in the distribution of cyanobacterial toxins in Europe, potentially promoting selection of a few highly toxic species or strains.
The active global SARS-CoV-2 pandemic caused more than 426 million cases and 5.8 million deaths worldwide. The development of completely new drugs for such a novel disease is a challenging, time intensive process. Despite researchers around the world working on this task, no effective treatments have been developed yet. This emphasizes the importance of drug repurposing, where treatments are found among existing drugs that are meant for different diseases. A common approach to this is based on knowledge graphs, that condense relationships between entities like drugs, diseases and genes. Graph neural networks (GNNs) can then be used for the task at hand by predicting links in such knowledge graphs. Expanding on state-of-the-art GNN research, Doshi et al. recently developed the Dr-COVID model. We further extend their work using additional output interpretation strategies. The best aggregation strategy derives a top-100 ranking of 8,070 candidate drugs, 32 of which are currently being tested in COVID-19-related clinical trials. Moreover, we present an alternative application for the model, the generation of additional candidates based on a given pre-selection of drug candidates using collaborative filtering. In addition, we improved the implementation of the Dr-COVID model by significantly shortening the inference and pre-processing time by exploiting data-parallelism. As drug repurposing is a task that requires high computation and memory resources, we further accelerate the post-processing phase using a new emerging hardware-we propose a new approach to leverage the use of high-capacity Non-Volatile Memory for aggregate drug ranking.
Ranking local climate policy
(2021)
Climate mitigation and climate adaptation are crucial tasks for urban areas and can involve synergies as well as trade-offs. However, few studies have examined how mitigation and adaptation efforts relate to each other in a large number of differently sized cities, and therefore we know little about whether forerunners in mitigation are also leading in adaptation or if cities tend to focus on just one policy field. This article develops an internationally applicable approach to rank cities on climate policy that incorporates multiple indicators related to (1) local commitments on mitigation and adaptation, (2) urban mitigation and adaptation plans and (3) climate adaptation and mitigation ambitions. We apply this method to rank 104 differently sized German cities and identify six clusters: climate policy leaders, climate adaptation leaders, climate mitigation leaders, climate policy followers, climate policy latecomers and climate policy laggards. The article seeks explanations for particular cities' positions and shows that coping with climate change in a balanced way on a high level depends on structural factors, in particular city size, the pathways of local climate policies since the 1990s and funding programmes for both climate mitigation and adaptation.