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Reproducibility is a defining feature of science, but the extent to which it characterizes current research is unknown. We conducted replications of 100 experimental and correlational studies published in three psychology journals using high-powered designs and original materials when available. Replication effects were half the magnitude of original effects, representing a substantial decline. Ninety-seven percent of original studies had statistically significant results. Thirty-six percent of replications had statistically significant results; 47% of original effect sizes were in the 95% confidence interval of the replication effect size; 39% of effects were subjectively rated to have replicated the original result; and if no bias in original results is assumed, combining original and replication results left 68% with statistically significant effects. Correlational tests suggest that replication success was better predicted by the strength of original evidence than by characteristics of the original and replication teams.
Gilbert et al. conclude that evidence from the Open Science Collaboration’s Reproducibility Project: Psychology indicates high reproducibility, given the study methodology. Their very optimistic assessment is limited by statistical misconceptions and by causal inferences from selectively interpreted, correlational data. Using the Reproducibility Project: Psychology data, both optimistic and pessimistic conclusions about reproducibility are possible, and neither are yet warranted.
The persistence of topography within ancient orogens remains one of the outstanding questions in landscape evolution. In the eastern North American Appalachians, this question is manifest in the outstanding problem of whether topographic relief is in a quasi-equilibrium state, decaying slowly over many millennia, or whether relief has increased during the late Cenozoic. Here we present quantitative geomorphic data from the nonglaciated portion of the Susquehanna River drainage basin that provide insight into these end-member models. Analysis of channel profiles draining upland catchments in the northern Valley and Ridge, Appalachian Plateau, Blue Ridge, and Piedmont provinces reveals that a large number of streams have well defined knickpoints clustered at 300-600 m elevation but not systematically associated with transitions from weak to resistant substrate. Cosmogenic Be-10 inventories of modern stream sediment indicate that erosion rates are spatially variable, ranging from similar to 5-30 m/Myr above knickpoints to similar to 50-100 m/Myr below knickpoints. Overall, channel gradients, normalized for drainage area, scale linearly with catchment-averaged erosion rates. Collectively, regionally consistent spatial relationships among erosion rate, channel steepness, and knickpoints reveal an ongoing wave of transient channel adjustment to a change in relative base level. Reconstructions of relict channel profiles above knickpoints suggest that higher rates of incision are associated with similar to 100-150 m of relative base level fall that accompanied epierogenic rock uplift rather than a change to a more erosive climate or drainage reorganization. Channel response timescales imply that the onset of relative base level change predates similar to 3.5 Ma and may have begun as early as similar to 15 Ma. We suggest that adjustment of the channel network was likely driven by changes in mantle dynamics along the eastern seaboard of North America during the Neogene.
On 12 September 2007, an M-w 8.4 earthquake occurred within the southern section of the Mentawai segment of the Sumatra subduction zone, where the subduction thrust had previously ruptured in 1833 and 1797. Traveltime data obtained from a temporary local seismic network, deployed between December 2007 and October 2008 to record the aftershocks of the 2007 event, was used to determine two-dimensional (2-D) and three-dimensional (3-D) velocity models of the Mentawai segment. The seismicity distribution reveals significant activity along the subduction interface and within two clusters in the overriding plate either side of the forearc basin. The downgoing slab is clearly distinguished by a dipping region of high Vp (8.0 km/s), which can be a traced to similar to 50 km depth, with an increased Vp/Vs ratio (1.75 to 1.90) beneath the islands and the western side of the forearc basin, suggesting hydrated oceanic crust. Above the slab, a shallow continental Moho of less than 30 km depth can be inferred, suggesting that the intersection of the continental mantle with the subducting slab is much shallower than the downdip limit of the seismogenic zone despite localized serpentinization being present at the toe of the mantle wedge. The outer arc islands are characterized by low Vp (4.5-5.8 km/s) and high Vp/Vs (greater than 2.0), suggesting that they consist of fluid saturated sediments. The very low rigidity of the outer forearc contributed to the slow rupture of the M-w 7.7 Mentawai tsunami earthquake on 25 October 2010.
Time-resolved crystallography reveals allosteric communication aligned with molecular breathing
(2019)
A comprehensive understanding of protein function demands correlating structure and dynamic changes. Using time-resolved serial synchrotron crystallography, we visualized half-of-the-sites reactivity and correlated molecular-breathing motions in the enzyme fluoroacetate dehalogenase. Eighteen time points from 30 milliseconds to 30 seconds cover four turnover cycles of the irreversible reaction. They reveal sequential substrate binding, covalent-intermediate formation, setup of a hydrolytic water molecule, and product release. Small structural changes of the protein mold and variations in the number and placement of water molecules accompany the various chemical steps of catalysis. Triggered by enzyme-ligand interactions, these repetitive changes in the protein framework’s dynamics and entropy constitute crucial components of the catalytic machinery.
We present a ‘hit-and-return’ (HARE) method for time-resolved serial synchrotron crystallography with time resolution from milliseconds to seconds or longer. Timing delays are set mechanically, using the regular pattern in fixed-target crystallography chips and a translation stage system. Optical pump-probe experiments to capture intermediate structures of fluoroacetate dehalogenase binding to its ligand demonstrated that data can be collected at short (30 ms), medium (752 ms) and long (2,052 ms) intervals.
The surface tension and dilational surface visco-elasticity of the individual solutions of the biopolymer DNA and the azobenzene-containing cationic surfactant AzoTAB, as well as their mixtures were measured using the drop profile analysis tensiometry. The negatively charged DNA molecules form complexes with the cationic surfactant AzoTAB. Mixed DNA + AzoTAB solutions exhibit high surface activity and surface layer elasticity. Extremes in the dependence of these characteristics on the AzoTAB concentration exist within the concentration range of 3 x 10(-6)-5 x 10(-5) M. The surface tension of the mixture shows a minimum with a subsequent maximum. In the same concentration range the elasticity shows first a maximum and then a subsequent minimum. A recently developed thermodynamic model was modified to account for the dependence of the adsorption equilibrium constant of the adsorbed complex on the cationic surfactant concentration. This modified theory shows good agreement with the experimental data both for the surface tension and the elasticity values over the entire range of studied AzoTAB concentrations. (C) 2016 Elsevier B.V. All rights reserved.