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Year of publication
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- Article (244)
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- Doctoral Thesis (2)
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- yes (281)
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- evolution (5)
- ancient DNA (4)
- animal movement (4)
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- home range (4)
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- Chlamydomonas (3)
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Institute
- Institut für Biochemie und Biologie (281) (remove)
Right on track?
(2019)
Hofman, Maarten P. G. ; Hayward, M. W. ; Heim, M. ; Marchand, P. ; Rolandsen, C. M. ; Mattisson, Jenny ; Urbano, F. ; Heurich, M. ; Mysterud, A. ; Melzheimer, J. ; Morellet, N. ; Voigt, Ulrich ; Allen, B. L. ; Gehr, Benedikt ; Rouco Zufiaurre, Carlos ; Ullmann, Wiebke ; Holand, O. ; Jorgensen, n H. ; Steinheim, G. ; Cagnacci, F. ; Kroeschel, M. ; Kaczensky, P. ; Buuveibaatar, B. ; Payne, J. C. ; Palmegiani, I ; Jerina, K. ; Kjellander, P. ; Johansson, O. ; LaPoint, S. ; Bayrakcismith, R. ; Linnell, J. D. C. ; Zaccaroni, M. ; Jorge, M. L. S. ; Oshima, J. E. F. ; Songhurst, A. ; Fischer, C. ; Mc Bride, R. T. ; Thompson, J. J. ; Streif, S. ; Sandfort, R. ; Bonenfant, Christophe ; Drouilly, M. ; Klapproth, M. ; Zinner, Dietmar ; Yarnell, Richard ; Stronza, A. ; Wilmott, L. ; Meisingset, E. ; Thaker, Maria ; Vanak, A. T. ; Nicoloso, S. ; Graeber, R. ; Said, S. ; Boudreau, M. R. ; Devlin, A. ; Hoogesteijn, R. ; May-Junior, J. A. ; Nifong, J. C. ; Odden, J. ; Quigley, H. B. ; Tortato, F. ; Parker, D. M. ; Caso, A. ; Perrine, J. ; Tellaeche, C. ; Zieba, F. ; Zwijacz-Kozica, T. ; Appel, C. L. ; Axsom, I ; Bean, W. T. ; Cristescu, B. ; Periquet, S. ; Teichman, K. J. ; Karpanty, S. ; Licoppe, A. ; Menges, V ; Black, K. ; Scheppers, Thomas L. ; Schai-Braun, S. C. ; Azevedo, F. C. ; Lemos, F. G. ; Payne, A. ; Swanepoel, L. H. ; Weckworth, B. ; Berger, A. ; Bertassoni, Alessandra ; McCulloch, G. ; Sustr, P. ; Athreya, V ; Bockmuhl, D. ; Casaer, J. ; Ekori, A. ; Melovski, D. ; Richard-Hansen, C. ; van de Vyver, D. ; Reyna-Hurtado, R. ; Robardet, E. ; Selva, N. ; Sergiel, A. ; Farhadinia, M. S. ; Sunde, P. ; Portas, R. ; Ambarli, Hüseyin ; Berzins, R. ; Kappeler, P. M. ; Mann, G. K. ; Pyritz, L. ; Bissett, C. ; Grant, T. ; Steinmetz, R. ; Swedell, Larissa ; Welch, R. J. ; Armenteras, D. ; Bidder, O. R. ; Gonzalez, T. M. ; Rosenblatt, A. ; Kachel, S. ; Balkenhol, N.
Satellite telemetry is an increasingly utilized technology in wildlife research, and current devices can track individual animal movements at unprecedented spatial and temporal resolutions. However, as we enter the golden age of satellite telemetry, we need an in-depth understanding of the main technological, species-specific and environmental factors that determine the success and failure of satellite tracking devices across species and habitats. Here, we assess the relative influence of such factors on the ability of satellite telemetry units to provide the expected amount and quality of data by analyzing data from over 3,000 devices deployed on 62 terrestrial species in 167 projects worldwide. We evaluate the success rate in obtaining GPS fixes as well as in transferring these fixes to the user and we evaluate failure rates. Average fix success and data transfer rates were high and were generally better predicted by species and unit characteristics, while environmental characteristics influenced the variability of performance. However, 48% of the unit deployments ended prematurely, half of them due to technical failure. Nonetheless, this study shows that the performance of satellite telemetry applications has shown improvements over time, and based on our findings, we provide further recommendations for both users and manufacturers.
Tiegs, Scott D. ; Costello, David M. ; Isken, Mark W. ; Woodward, Guy ; McIntyre, Peter B. ; Gessner, Mark O. ; Chauvet, Eric ; Griffiths, Natalie A. ; Flecker, Alex S. ; Acuna, Vicenc ; Albarino, Ricardo ; Allen, Daniel C. ; Alonso, Cecilia ; Andino, Patricio ; Arango, Clay ; Aroviita, Jukka ; Barbosa, Marcus V. M. ; Barmuta, Leon A. ; Baxter, Colden V. ; Bell, Thomas D. C. ; Bellinger, Brent ; Boyero, Luz ; Brown, Lee E. ; Bruder, Andreas ; Bruesewitz, Denise A. ; Burdon, Francis J. ; Callisto, Marcos ; Canhoto, Cristina ; Capps, Krista A. ; Castillo, Maria M. ; Clapcott, Joanne ; Colas, Fanny ; Colon-Gaud, Checo ; Cornut, Julien ; Crespo-Perez, Veronica ; Cross, Wyatt F. ; Culp, Joseph M. ; Danger, Michael ; Dangles, Olivier ; de Eyto, Elvira ; Derry, Alison M. ; Diaz Villanueva, Veronica ; Douglas, Michael M. ; Elosegi, Arturo ; Encalada, Andrea C. ; Entrekin, Sally ; Espinosa, Rodrigo ; Ethaiya, Diana ; Ferreira, Veronica ; Ferriol, Carmen ; Flanagan, Kyla M. ; Fleituch, Tadeusz ; Shah, Jennifer J. Follstad ; Frainer, Andre ; Friberg, Nikolai ; Frost, Paul C. ; Garcia, Erica A. ; Lago, Liliana Garcia ; Garcia Soto, Pavel Ernesto ; Ghate, Sudeep ; Giling, Darren P. ; Gilmer, Alan ; Goncalves, Jose Francisco ; Gonzales, Rosario Karina ; Graca, Manuel A. S. ; Grace, Mike ; Grossart, Hans-Peter ; Guerold, Francois ; Gulis, Vlad ; Hepp, Luiz U. ; Higgins, Scott ; Hishi, Takuo ; Huddart, Joseph ; Hudson, John ; Imberger, Samantha ; Iniguez-Armijos, Carlos ; Iwata, Tomoya ; Janetski, David J. ; Jennings, Eleanor ; Kirkwood, Andrea E. ; Koning, Aaron A. ; Kosten, Sarian ; Kuehn, Kevin A. ; Laudon, Hjalmar ; Leavitt, Peter R. ; Lemes da Silva, Aurea L. ; Leroux, Shawn J. ; Leroy, Carri J. ; Lisi, Peter J. ; MacKenzie, Richard ; Marcarelli, Amy M. ; Masese, Frank O. ; Mckie, Brendan G. ; Oliveira Medeiros, Adriana ; Meissner, Kristian ; Milisa, Marko ; Mishra, Shailendra ; Miyake, Yo ; Moerke, Ashley ; Mombrikotb, Shorok ; Mooney, Rob ; Moulton, Tim ; Muotka, Timo ; Negishi, Junjiro N. ; Neres-Lima, Vinicius ; Nieminen, Mika L. ; Nimptsch, Jorge ; Ondruch, Jakub ; Paavola, Riku ; Pardo, Isabel ; Patrick, Christopher J. ; Peeters, Edwin T. H. M. ; Pozo, Jesus ; Pringle, Catherine ; Prussian, Aaron ; Quenta, Estefania ; Quesada, Antonio ; Reid, Brian ; Richardson, John S. ; Rigosi, Anna ; Rincon, Jose ; Risnoveanu, Geta ; Robinson, Christopher T. ; Rodriguez-Gallego, Lorena ; Royer, Todd V. ; Rusak, James A. ; Santamans, Anna C. ; Selmeczy, Geza B. ; Simiyu, Gelas ; Skuja, Agnija ; Smykla, Jerzy ; Sridhar, Kandikere R. ; Sponseller, Ryan ; Stoler, Aaron ; Swan, Christopher M. ; Szlag, David ; Teixeira-de Mello, Franco ; Tonkin, Jonathan D. ; Uusheimo, Sari ; Veach, Allison M. ; Vilbaste, Sirje ; Vought, Lena B. M. ; Wang, Chiao-Ping ; Webster, Jackson R. ; Wilson, Paul B. ; Woelfl, Stefan ; Xenopoulos, Marguerite A. ; Yates, Adam G. ; Yoshimura, Chihiro ; Yule, Catherine M. ; Zhang, Yixin X. ; Zwart, Jacob A.
River ecosystems receive and process vast quantities of terrestrial organic carbon, the fate of which depends strongly on microbial activity. Variation in and controls of processing rates, however, are poorly characterized at the global scale. In response, we used a peer-sourced research network and a highly standardized carbon processing assay to conduct a global-scale field experiment in greater than 1000 river and riparian sites. We found that Earth’s biomes have distinct carbon processing signatures. Slow processing is evident across latitudes, whereas rapid rates are restricted to lower latitudes. Both the mean rate and variability decline with latitude, suggesting temperature constraints toward the poles and greater roles for other environmental drivers (e.g., nutrient loading) toward the equator. These results and data set the stage for unprecedented “next-generation biomonitoring” by establishing baselines to help quantify environmental impacts to the functioning of ecosystems at a global scale.
Chipman, Ariel D. ; Ferrier, David E. K. ; Brena, Carlo ; Qu, Jiaxin ; Hughes, Daniel S. T. ; Schroeder, Reinhard ; Torres-Oliva, Montserrat ; Znassi, Nadia ; Jiang, Huaiyang ; Almeida, Francisca C. ; Alonso, Claudio R. ; Apostolou, Zivkos ; Aqrawi, Peshtewani ; Arthur, Wallace ; Barna, Jennifer C. J. ; Blankenburg, Kerstin P. ; Brites, Daniela ; Capella-Gutierrez, Salvador ; Coyle, Marcus ; Dearden, Peter K. ; Du Pasquier, Louis ; Duncan, Elizabeth J. ; Ebert, Dieter ; Eibner, Cornelius ; Erikson, Galina ; Evans, Peter D. ; Extavour, Cassandra G. ; Francisco, Liezl ; Gabaldon, Toni ; Gillis, William J. ; Goodwin-Horn, Elizabeth A. ; Green, Jack E. ; Griffiths-Jones, Sam ; Grimmelikhuijzen, Cornelis J. P. ; Gubbala, Sai ; Guigo, Roderic ; Han, Yi ; Hauser, Frank ; Havlak, Paul ; Hayden, Luke ; Helbing, Sophie ; Holder, Michael ; Hui, Jerome H. L. ; Hunn, Julia P. ; Hunnekuhl, Vera S. ; Jackson, LaRonda ; Javaid, Mehwish ; Jhangiani, Shalini N. ; Jiggins, Francis M. ; Jones, Tamsin E. ; Kaiser, Tobias S. ; Kalra, Divya ; Kenny, Nathan J. ; Korchina, Viktoriya ; Kovar, Christie L. ; Kraus, F. Bernhard ; Lapraz, Francois ; Lee, Sandra L. ; Lv, Jie ; Mandapat, Christigale ; Manning, Gerard ; Mariotti, Marco ; Mata, Robert ; Mathew, Tittu ; Neumann, Tobias ; Newsham, Irene ; Ngo, Dinh N. ; Ninova, Maria ; Okwuonu, Geoffrey ; Ongeri, Fiona ; Palmer, William J. ; Patil, Shobha ; Patraquim, Pedro ; Pham, Christopher ; Pu, Ling-Ling ; Putman, Nicholas H. ; Rabouille, Catherine ; Ramos, Olivia Mendivil ; Rhodes, Adelaide C. ; Robertson, Helen E. ; Robertson, Hugh M. ; Ronshaugen, Matthew ; Rozas, Julio ; Saada, Nehad ; Sanchez-Gracia, Alejandro ; Scherer, Steven E. ; Schurko, Andrew M. ; Siggens, Kenneth W. ; Simmons, DeNard ; Stief, Anna ; Stolle, Eckart ; Telford, Maximilian J. ; Tessmar-Raible, Kristin ; Thornton, Rebecca ; van der Zee, Maurijn ; von Haeseler, Arndt ; Williams, James M. ; Willis, Judith H. ; Wu, Yuanqing ; Zou, Xiaoyan ; Lawson, Daniel ; Muzny, Donna M. ; Worley, Kim C. ; Gibbs, Richard A. ; Akam, Michael ; Richards, Stephen
Myriapods (e. g., centipedes and millipedes) display a simple homonomous body plan relative to other arthropods. All members of the class are terrestrial, but they attained terrestriality independently of insects. Myriapoda is the only arthropod class not represented by a sequenced genome. We present an analysis of the genome of the centipede Strigamia maritima. It retains a compact genome that has undergone less gene loss and shuffling than previously sequenced arthropods, and many orthologues of genes conserved from the bilaterian ancestor that have been lost in insects. Our analysis locates many genes in conserved macro-synteny contexts, and many small-scale examples of gene clustering. We describe several examples where S. maritima shows different solutions from insects to similar problems. The insect olfactory receptor gene family is absent from S. maritima, and olfaction in air is likely effected by expansion of other receptor gene families. For some genes S. maritima has evolved paralogues to generate coding sequence diversity, where insects use alternate splicing. This is most striking for the Dscam gene, which in Drosophila generates more than 100,000 alternate splice forms, but in S. maritima is encoded by over 100 paralogues. We see an intriguing linkage between the absence of any known photosensory proteins in a blind organism and the additional absence of canonical circadian clock genes. The phylogenetic position of myriapods allows us to identify where in arthropod phylogeny several particular molecular mechanisms and traits emerged. For example, we conclude that juvenile hormone signalling evolved with the emergence of the exoskeleton in the arthropods and that RR-1 containing cuticle proteins evolved in the lineage leading to Mandibulata. We also identify when various gene expansions and losses occurred. The genome of S. maritima offers us a unique glimpse into the ancestral arthropod genome, while also displaying many adaptations to its specific life history.
Moving in the Anthropocene
(2018)
Tucker, Marlee A. ; Boehning-Gaese, Katrin ; Fagan, William F. ; Fryxell, John M. ; Van Moorter, Bram ; Alberts, Susan C. ; Ali, Abdullahi H. ; Allen, Andrew M. ; Attias, Nina ; Avgar, Tal ; Bartlam-Brooks, Hattie ; Bayarbaatar, Buuveibaatar ; Belant, Jerrold L. ; Bertassoni, Alessandra ; Beyer, Dean ; Bidner, Laura ; van Beest, Floris M. ; Blake, Stephen ; Blaum, Niels ; Bracis, Chloe ; Brown, Danielle ; de Bruyn, P. J. Nico ; Cagnacci, Francesca ; Calabrese, Justin M. ; Camilo-Alves, Constanca ; Chamaille-Jammes, Simon ; Chiaradia, Andre ; Davidson, Sarah C. ; Dennis, Todd ; DeStefano, Stephen ; Diefenbach, Duane ; Douglas-Hamilton, Iain ; Fennessy, Julian ; Fichtel, Claudia ; Fiedler, Wolfgang ; Fischer, Christina ; Fischhoff, Ilya ; Fleming, Christen H. ; Ford, Adam T. ; Fritz, Susanne A. ; Gehr, Benedikt ; Goheen, Jacob R. ; Gurarie, Eliezer ; Hebblewhite, Mark ; Heurich, Marco ; Hewison, A. J. Mark ; Hof, Christian ; Hurme, Edward ; Isbell, Lynne A. ; Janssen, Rene ; Jeltsch, Florian ; Kaczensky, Petra ; Kane, Adam ; Kappeler, Peter M. ; Kauffman, Matthew ; Kays, Roland ; Kimuyu, Duncan ; Koch, Flavia ; Kranstauber, Bart ; LaPoint, Scott ; Leimgruber, Peter ; Linnell, John D. C. ; Lopez-Lopez, Pascual ; Markham, A. Catherine ; Mattisson, Jenny ; Medici, Emilia Patricia ; Mellone, Ugo ; Merrill, Evelyn ; Mourao, Guilherme de Miranda ; Morato, Ronaldo G. ; Morellet, Nicolas ; Morrison, Thomas A. ; Diaz-Munoz, Samuel L. ; Mysterud, Atle ; Nandintsetseg, Dejid ; Nathan, Ran ; Niamir, Aidin ; Odden, John ; Oliveira-Santos, Luiz Gustavo R. ; Olson, Kirk A. ; Patterson, Bruce D. ; de Paula, Rogerio Cunha ; Pedrotti, Luca ; Reineking, Bjorn ; Rimmler, Martin ; Rogers, Tracey L. ; Rolandsen, Christer Moe ; Rosenberry, Christopher S. ; Rubenstein, Daniel I. ; Safi, Kamran ; Said, Sonia ; Sapir, Nir ; Sawyer, Hall ; Schmidt, Niels Martin ; Selva, Nuria ; Sergiel, Agnieszka ; Shiilegdamba, Enkhtuvshin ; Silva, Joao Paulo ; Singh, Navinder ; Solberg, Erling J. ; Spiegel, Orr ; Strand, Olav ; Sundaresan, Siva ; Ullmann, Wiebke ; Voigt, Ulrich ; Wall, Jake ; Wattles, David ; Wikelski, Martin ; Wilmers, Christopher C. ; Wilson, John W. ; Wittemyer, George ; Zieba, Filip ; Zwijacz-Kozica, Tomasz ; Mueller, Thomas
Animal movement is fundamental for ecosystem functioning and species survival, yet the effects of the anthropogenic footprint on animal movements have not been estimated across species. Using a unique GPS-tracking database of 803 individuals across 57 species, we found that movements of mammals in areas with a comparatively high human footprint were on average one-half to one-third the extent of their movements in areas with a low human footprint. We attribute this reduction to behavioral changes of individual animals and to the exclusion of species with long-range movements from areas with higher human impact. Global loss of vagility alters a key ecological trait of animals that affects not only population persistence but also ecosystem processes such as predator-prey interactions, nutrient cycling, and disease transmission.
Computational brain maps as opposed to maps of receptor surfaces strongly reflect functional neuronal design principles. In echolocating bats, computational maps are established that topographically represent the distance of objects. These target range maps are derived from the temporal delay between emitted call and returning echo and constitute a regular representation of time (chronotopy). Basic features of these maps are innate, and in different bat species the map size and precision varies. An inherent advantage of target range maps is the implementation of mechanisms for lateral inhibition and excitatory feedback. Both can help to focus target ranging depending on the actual echolocation situation. However, these maps are not absolutely necessary for bat echolocation since there are bat species without cortical target-distance maps, which use alternative ensemble computation mechanisms.
The Early Growth Genetics (EGG) and EArly Genetics and Lifecourse Epidemiology (EAGLE) consortia
(2019)
Middeldorp, Christel M. ; Mahajan, Anubha ; Horikoshi, Momoko ; Robertson, Neil R. ; Beaumont, Robin N. ; Bradfield, Jonathan P. ; Bustamante, Mariona ; Cousminer, Diana L. ; Day, Felix R. ; De Silva, N. Maneka ; Guxens, Monica ; Mook-Kanamori, Dennis O. ; St Pourcain, Beate ; Warrington, Nicole M. ; Adair, Linda S. ; Ahlqvist, Emma ; Ahluwalia, Tarunveer Singh ; Almgren, Peter ; Ang, Wei ; Atalay, Mustafa ; Auvinen, Juha ; Bartels, Meike ; Beckmann, Jacques S. ; Bilbao, Jose Ramon ; Bond, Tom ; Borja, Judith B. ; Cavadino, Alana ; Charoen, Pimphen ; Chen, Zhanghua ; Coin, Lachlan ; Cooper, Cyrus ; Curtin, John A. ; Custovic, Adnan ; Das, Shikta ; Davies, Gareth E. ; Dedoussis, George V. ; Duijts, Liesbeth ; Eastwood, Peter R. ; Eliasen, Anders U. ; Elliott, Paul ; Eriksson, Johan G. ; Estivill, Xavier ; Fadista, Joao ; Fedko, Iryna O. ; Frayling, Timothy M. ; Gaillard, Romy ; Gauderman, W. James ; Geller, Frank ; Gilliland, Frank ; Gilsanz, Vincente ; Granell, Raquel ; Grarup, Niels ; Groop, Leif ; Hadley, Dexter ; Hakonarson, Hakon ; Hansen, Torben ; Hartman, Catharina A. ; Hattersley, Andrew T. ; Hayes, M. Geoffrey ; Hebebrand, Johannes ; Heinrich, Joachim ; Helgeland, Oyvind ; Henders, Anjali K. ; Henderson, John ; Henriksen, Tine B. ; Hirschhorn, Joel N. ; Hivert, Marie-France ; Hocher, Berthold ; Holloway, John W. ; Holt, Patrick ; Hottenga, Jouke-Jan ; Hypponen, Elina ; Iniguez, Carmen ; Johansson, Stefan ; Jugessur, Astanand ; Kahonen, Mika ; Kalkwarf, Heidi J. ; Kaprio, Jaakko ; Karhunen, Ville ; Kemp, John P. ; Kerkhof, Marjan ; Koppelman, Gerard H. ; Korner, Antje ; Kotecha, Sailesh ; Kreiner-Moller, Eskil ; Kulohoma, Benard ; Kumar, Ashish ; Kutalik, Zoltan ; Lahti, Jari ; Lappe, Joan M. ; Larsson, Henrik ; Lehtimaki, Terho ; Lewin, Alexandra M. ; Li, Jin ; Lichtenstein, Paul ; Lindgren, Cecilia M. ; Lindi, Virpi ; Linneberg, Allan ; Liu, Xueping ; Liu, Jun ; Lowe, William L. ; Lundstrom, Sebastian ; Lyytikainen, Leo-Pekka ; Ma, Ronald C. W. ; Mace, Aurelien ; Magi, Reedik ; Magnus, Per ; Mamun, Abdullah A. ; Mannikko, Minna ; Martin, Nicholas G. ; Mbarek, Hamdi ; McCarthy, Nina S. ; Medland, Sarah E. ; Melbye, Mads ; Melen, Erik ; Mohlke, Karen L. ; Monnereau, Claire ; Morgen, Camilla S. ; Morris, Andrew P. ; Murray, Jeffrey C. ; Myhre, Ronny ; Najman, Jackob M. ; Nivard, Michel G. ; Nohr, Ellen A. ; Nolte, Ilja M. ; Ntalla, Ioanna ; Oberfield, Sharon E. ; Oken, Emily ; Oldehinkel, Albertine J. ; Pahkala, Katja ; Palviainen, Teemu ; Panoutsopoulou, Kalliope ; Pedersen, Oluf ; Pennell, Craig E. ; Pershagen, Goran ; Pitkanen, Niina ; Plomin, Robert ; Power, Christine ; Prasad, Rashmi B. ; Prokopenko, Inga ; Pulkkinen, Lea ; Raikkonen, Katri ; Raitakari, Olli T. ; Reynolds, Rebecca M. ; Richmond, Rebecca C. ; Rivadeneira, Fernando ; Rodriguez, Alina ; Rose, Richard J. ; Salem, Rany ; Santa-Marina, Loreto ; Saw, Seang-Mei ; Schnurr, Theresia M. ; Scott, James G. ; Selzam, Saskia ; Shepherd, John A. ; Simpson, Angela ; Skotte, Line ; Sleiman, Patrick M. A. ; Snieder, Harold ; Sorensen, Thorkild I. A. ; Standl, Marie ; Steegers, Eric A. P. ; Strachan, David P. ; Straker, Leon ; Strandberg, Timo ; Taylor, Michelle ; Teo, Yik-Ying ; Thiering, Elisabeth ; Torrent, Maties ; Tyrrell, Jessica ; Uitterlinden, Andre G. ; van Beijsterveldt, Toos ; van der Most, Peter J. ; van Duijn, Cornelia M. ; Viikari, Jorma ; Vilor-Tejedor, Natalia ; Vogelezang, Suzanne ; Vonk, Judith M. ; Vrijkotte, Tanja G. M. ; Vuoksimaa, Eero ; Wang, Carol A. ; Watkins, William J. ; Wichmann, H-Erich ; Willemsen, Gonneke ; Williams, Gail M. ; Wilson, James F. ; Wray, Naomi R. ; Xu, Shujing ; Xu, Cheng-Jian ; Yaghootkar, Hanieh ; Yi, Lu ; Zafarmand, Mohammad Hadi ; Zeggini, Eleftheria ; Zemel, Babette S. ; Hinney, Anke ; Lakka, Timo A. ; Whitehouse, Andrew J. O. ; Sunyer, Jordi ; Widen, Elisabeth E. ; Feenstra, Bjarke ; Sebert, Sylvain ; Jacobsson, Bo ; Njolstad, Pal R. ; Stoltenberg, Camilla ; Smith, George Davey ; Lawlor, Debbie A. ; Paternoster, Lavinia ; Timpson, Nicholas J. ; Ong, Ken K. ; Bisgaard, Hans ; Bonnelykke, Klaus ; Jaddoe, Vincent W. V. ; Tiemeier, Henning ; Jarvelin, Marjo-Riitta ; Evans, David M. ; Perry, John R. B. ; Grant, Struan F. A. ; Boomsma, Dorret I. ; Freathy, Rachel M. ; McCarthy, Mark I. ; Felix, Janine F.
The impact of many unfavorable childhood traits or diseases, such as low birth weight and mental disorders, is not limited to childhood and adolescence, as they are also associated with poor outcomes in adulthood, such as cardiovascular disease. Insight into the genetic etiology of childhood and adolescent traits and disorders may therefore provide new perspectives, not only on how to improve wellbeing during childhood, but also how to prevent later adverse outcomes. To achieve the sample sizes required for genetic research, the Early Growth Genetics (EGG) and EArly Genetics and Lifecourse Epidemiology (EAGLE) consortia were established. The majority of the participating cohorts are longitudinal population-based samples, but other cohorts with data on early childhood phenotypes are also involved. Cohorts often have a broad focus and collect(ed) data on various somatic and psychiatric traits as well as environmental factors. Genetic variants have been successfully identified for multiple traits, for example, birth weight, atopic dermatitis, childhood BMI, allergic sensitization, and pubertal growth. Furthermore, the results have shown that genetic factors also partly underlie the association with adult traits. As sample sizes are still increasing, it is expected that future analyses will identify additional variants. This, in combination with the development of innovative statistical methods, will provide detailed insight on the mechanisms underlying the transition from childhood to adult disorders. Both consortia welcome new collaborations. Policies and contact details are available from the corresponding authors of this manuscript and/or the consortium websites.
Gonzalez-Fortes, Gloria M. ; Tassi, F. ; Trucchi, E. ; Henneberger, K. ; Paijmans, Johanna L. A. ; Diez-del-Molino, D. ; Schroeder, H. ; Susca, R. R. ; Barroso-Ruiz, C. ; Bermudez, F. J. ; Barroso-Medina, C. ; Bettencourt, A. M. S. ; Sampaio, H. A. ; Salas, A. ; de Lombera-Hermida, A. ; Fabregas Valcarce, Ramón ; Vaquero, M. ; Alonso, S. ; Lozano, Marina ; Rodriguez-Alvarez, Xose Pedro ; Fernandez-Rodriguez, C. ; Manica, Andrea ; Hofreiter, Michael ; Barbujani, Guido
Being at the western fringe of Europe, Iberia had a peculiar prehistory and a complex pattern of Neolithization. A few studies, all based on modern populations, reported the presence of DNA of likely African origin in this region, generally concluding it was the result of recent gene flow, probably during the Islamic period. Here, we provide evidence of much older gene flow from Africa to Iberia by sequencing whole genomes from four human remains from northern Portugal and southern Spain dated around 4000 years BP (from the Middle Neolithic to the Bronze Age). We found one of them to carry an unequivocal sub-Saharan mitogenome of most probably West or West-Central African origin, to our knowledge never reported before in prehistoric remains outside Africa. Our analyses of ancient nuclear genomes show small but significant levels of sub-Saharan African affinity in several ancient Iberian samples, which indicates that what we detected was not an occasional individual phenomenon, but an admixture event recognizable at the population level. We interpret this result as evidence of an early migration process from Africa into the Iberian Peninsula through a western route, possibly across the Strait of Gibraltar.
Tree size and herbivory determine below-canopy grass quality and species composition in savannahs
(2009)
Large single-standing trees are rapidly declining in savannahs, ecosystems supporting a high diversity of large herbivorous mammals. Savannah trees are important as they support both a unique flora and fauna. The herbaceous layer in particular responds to the structural and functional properties of a tree. As shrubland expands stem thickening occurs and large trees are replaced by smaller trees. Here we examine whether small trees are as effective in providing advantages for grasses growing beneath their crowns as large trees are. The role of herbivory in this positive tree- grass interaction is also investigated. We assessed soil and grass nutrient content, structural properties, and herbaceous species composition beneath trees of three size classes and under two grazing regimes in a South African savannah. We found that grass leaf content (N and P) beneath the crowns of particularly large (ca. 3.5 m) and very large trees (ca. 9 m) was as much as 40% greater than the same grass species not growing under a tree canopy, whereas nutrient contents of grasses did not differ beneath small trees (< 2.3 m). Moderate herbivory enhanced these effects slightly. Grass species composition differed beneath and beyond the tree canopy but not between tree size classes. As large trees significantly improve the grass nutrient quality for grazers in contrast to smaller trees, the decline of the former should be halted. The presence of trees further increases grass species diversity and patchiness by favouring shade- tolerant species. Both grazing wildlife and livestock will benefit from the presence of large trees because of their structural and functional importance for savannahs.
Arnison, Paul G. ; Bibb, Mervyn J. ; Bierbaum, Gabriele ; Bowers, Albert A. ; Bugni, Tim S. ; Bulaj, Grzegorz ; Camarero, Julio A. ; Campopiano, Dominic J. ; Challis, Gregory L. ; Clardy, Jon ; Cotter, Paul D. ; Craik, David J. ; Dawson, Michael ; Dittmann-Thünemann, Elke ; Donadio, Stefano ; Dorrestein, Pieter C. ; Entian, Karl-Dieter ; Fischbach, Michael A. ; Garavelli, John S. ; Goeransson, Ulf ; Gruber, Christian W. ; Haft, Daniel H. ; Hemscheidt, Thomas K. ; Hertweck, Christian ; Hill, Colin ; Horswill, Alexander R. ; Jaspars, Marcel ; Kelly, Wendy L. ; Klinman, Judith P. ; Kuipers, Oscar P. ; Link, A. James ; Liu, Wen ; Marahiel, Mohamed A. ; Mitchell, Douglas A. ; Moll, Gert N. ; Moore, Bradley S. ; Mueller, Rolf ; Nair, Satish K. ; Nes, Ingolf F. ; Norris, Gillian E. ; Olivera, Baldomero M. ; Onaka, Hiroyasu ; Patchett, Mark L. ; Piel, Jörn ; Reaney, Martin J. T. ; Rebuffat, Sylvie ; Ross, R. Paul ; Sahl, Hans-Georg ; Schmidt, Eric W. ; Selsted, Michael E. ; Severinov, Konstantin ; Shen, Ben ; Sivonen, Kaarina ; Smith, Leif ; Stein, Torsten ; Suessmuth, Roderich D. ; Tagg, John R. ; Tang, Gong-Li ; Truman, Andrew W. ; Vederas, John C. ; Walsh, Christopher T. ; Walton, Jonathan D. ; Wenzel, Silke C. ; Willey, Joanne M. ; van der Donk, Wilfred A.
This review presents recommended nomenclature for the biosynthesis of ribosomally synthesized and post-translationally modified peptides (RiPPs), a rapidly growing class of natural products. The current knowledge regarding the biosynthesis of the >20 distinct compound classes is also reviewed, and commonalities are discussed.
Soliveres, Santiago ; van der Plas, Fons ; Manning, Peter ; Prati, Daniel ; Gossner, Martin M. ; Renner, Swen C. ; Alt, Fabian ; Arndt, Hartmut ; Baumgartner, Vanessa ; Binkenstein, Julia ; Birkhofer, Klaus ; Blaser, Stefan ; Blüthgen, Nico ; Boch, Steffen ; Böhm, Stefan ; Börschig, Carmen ; Buscot, Francois ; Diekötter, Tim ; Heinze, Johannes ; Hölzel, Norbert ; Jung, Kirsten ; Klaus, Valentin H. ; Kleinebecker, Till ; Klemmer, Sandra ; Krauss, Jochen ; Lange, Markus ; Morris, E. Kathryn ; Müller, Jörg ; Oelmann, Yvonne ; Overmann, Jörg ; Pasalic, Esther ; Rillig, Matthias C. ; Schaefer, H. Martin ; Schloter, Michael ; Schmitt, Barbara ; Schöning, Ingo ; Schrumpf, Marion ; Sikorski, Johannes ; Socher, Stephanie A. ; Solly, Emily F. ; Sonnemann, Ilja ; Sorkau, Elisabeth ; Steckel, Juliane ; Steffan-Dewenter, Ingolf ; Stempfhuber, Barbara ; Tschapka, Marco ; Türke, Manfred ; Venter, Paul C. ; Weiner, Christiane N. ; Weisser, Wolfgang W. ; Werner, Michael ; Westphal, Catrin ; Wilcke, Wolfgang ; Wolters, Volkmar ; Wubet, Tesfaye ; Wurst, Susanne ; Fischer, Markus ; Allan, Eric