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We study buckling instabilities of filaments in biological systems. Filaments in a cell are the building blocks of the cytoskeleton. They are responsible for the mechanical stability of cells and play an important role in intracellular transport by molecular motors, which transport cargo such as organelles along cytoskeletal filaments. Filaments of the cytoskeleton are semiflexible polymers, i.e., their bending energy is comparable to the thermal energy such that they can be viewed as elastic rods on the nanometer scale, which exhibit pronounced thermal fluctuations. Like macroscopic elastic rods, filaments can undergo a mechanical buckling instability under a compressive load. In the first part of the thesis, we study how this buckling instability is affected by the pronounced thermal fluctuations of the filaments. In cells, compressive loads on filaments can be generated by molecular motors. This happens, for example, during cell division in the mitotic spindle. In the second part of the thesis, we investigate how the stochastic nature of such motor-generated forces influences the buckling behavior of filaments. In chapter 2 we review briefly the buckling instability problem of rods on the macroscopic scale and introduce an analytical model for buckling of filaments or elastic rods in two spatial dimensions in the presence of thermal fluctuations. We present an analytical treatment of the buckling instability in the presence of thermal fluctuations based on a renormalization-like procedure in terms of the non-linear sigma model where we integrate out short-wavelength fluctuations in order to obtain an effective theory for the mode of the longest wavelength governing the buckling instability. We calculate the resulting shift of the critical force by fluctuation effects and find that, in two spatial dimensions, thermal fluctuations increase this force. Furthermore, in the buckled state, thermal fluctuations lead to an increase in the mean projected length of the filament in the force direction. As a function of the contour length, the mean projected length exhibits a cusp at the buckling instability, which becomes rounded by thermal fluctuations. Our main result is the observation that a buckled filament is stretched by thermal fluctuations, i.e., its mean projected length in the direction of the applied force increases by thermal fluctuations. Our analytical results are confirmed by Monte Carlo simulations for buckling of semiflexible filaments in two spatial dimensions. We also perform Monte Carlo simulations in higher spatial dimensions and show that the increase in projected length by thermal fluctuations is less pronounced than in two dimensions and strongly depends on the choice of the boundary conditions. In the second part of this work, we present a model for buckling of semiflexible filaments under the action of molecular motors. We investigate a system in which a group of motors moves along a clamped filament carrying a second filament as a cargo. The cargo-filament is pushed against the wall and eventually buckles. The force-generating motors can stochastically unbind and rebind to the filament during the buckling process. We formulate a stochastic model of this system and calculate the mean first passage time for the unbinding of all linking motors which corresponds to the transition back to the unbuckled state of the cargo filament in a mean-field model. Our results show that for sufficiently short microtubules the movement of kinesin-I-motors is affected by the load force generated by the cargo filament. Our predictions could be tested in future experiments.
Stellar magnetic fields, as a crucial component of star formation and evolution, evade direct observation at least with current and near future instruments. However investigating whether magnetic fields are generated by a dynamo process or represent relics from the formation process, or whether they show a behavior similar to the sun or something very different, it is essential to investigate their structure and temporal evolution. Fortunately nature provides us with the possibility to indirectly observe surface topologies on distant stars by means of Doppler shift and polarization of light, though not without its challenges. Based on the mentioned effects, the so called Zeeman-Doppler Imaging technique is a powerful method to retrieve magnetic fields from rapid rotating stars based on measurements of spectropolarimetric observations in terms of Stokes profiles. In recent years, a large number of stellar magnetic field distributions could be reconstructed by Zeeman-Doppler Imaging (ZDI). However, the implementation of this method often relies on many approximations because, as an inversion method, it entails enormous computational requirements. The aim of this thesis is to develop methods for a ZDI, designed to invert time-resolved spectropolarimetric data of active late type stars, and to account for the expected complex and small scale magnetic fields on these stars. In order to reliably reconstruct the detailed field orientation and strength, the inversion method is employed to be able to use of all four Stokes components. Furthermore it is based on fully polarized radiative transfer calculations to account for the intricate interplay between temperature and magnetic field. Finally, the application of a newly developed ZDI code to Stokes I and V observations of II Pegasi (short: II Peg) was supposed to deliver the first magnetic surface maps for this highly active star. To accomplish the high computational burden of a radiative transfer based ZDI, we developed a novel approximation method to speed up the inversion process. It is based on Principal Component Analysis and Artificial Neural Networks. The latter approximate the functional mapping between atmospheric parameters and the corresponding local Stokes profiles. Inverse problems, as we are dealing with, are potentially ill-posed and require a regularization method. We propose a new regularization scheme, which implements a local entropy function that accounts for the peculiarities of the reconstruction of localized magnetic fields. To deal with the relatively large noise that is always present in polarimetric data, we developed a multi-line denoising technique based on Principal Component Analysis. In contrast to other multi-line techniques that extract from a large number of spectral lines a sort of mean profile, this method allows to extract individual spectral lines and thus allows for an inversion on the basis of specific lines. All these methods are incorporated in our newly developed ZDI code iMap, which is based on a conjugated gradient method. An in depth validation of our new synthesis method demonstrates the reliability and accuracy of this approach as well as a gain in computation time by almost three orders of magnitude relative to the conventional radiative transfer calculations. We investigated the influence of the different Stokes components (IV / IVQU) on the ability to reconstruct a known synthetic field configuration. In doing so we validate the capability of our inversion code, and we also assess limitations of magnetic field inversions in general. In a first application to II Peg, a K2 IV subgiant, we derived temperature and magnetic field surface distributions from spectropolarimetric data obtained in 2004 and 2007. It gives for the first time simultaneously the temporal evolution of the surface temperature and magnetic field distribution on II Peg.
Classical semiconductor physics has been continuously improving electronic components such as diodes, light-emitting diodes, solar cells and transistors based on highly purified inorganic crystals over the past decades. Organic semiconductors, notably polymeric, are a comparatively young field of research, the first light-emitting diode based on conjugated polymers having been demonstrated in 1990. Polymeric semiconductors are of tremendous interest for high-volume, low-cost manufacturing ("printed electronics"). Due to their rather simple device structure mostly comprising only one or two functional layers, polymeric diodes are much more difficult to optimize compared to small-molecular organic devices. Usually, functions such as charge injection and transport are handled by the same material which thus needs to be highly optimized. The present work contributes to expanding the knowledge on the physical mechanisms determining device performance by analyzing the role of charge injection and transport on device efficiency for blue and white-emitting devices, based on commercially relevant spiro-linked polyfluorene derivatives. It is shown that such polymers can act as very efficient electron conductors and that interface effects such as charge trapping play the key role in determining the overall device efficiency. This work contributes to the knowledge of how charges drift through the polymer layer to finally find neutral emissive trap states and thus allows a quantitative prediction of the emission color of multichromophoric systems, compatible with the observed color shifts upon driving voltage and temperature variation as well as with electrical conditioning effects. In a more methodically oriented part, it is demonstrated that the transient device emission observed upon terminating the driving voltage can be used to monitor the decay of geminately-bound species as well as to determine trapped charge densities. This enables direct comparisons with numerical simulations based on the known properties of charge injection, transport and recombination. The method of charge extraction under linear increasing voltages (CELIV) is investigated in some detail, correcting for errors in the published approach and highlighting the role of non-idealized conditions typically present in experiments. An improved method is suggested to determine the field dependence of charge mobility in a more accurate way. Finally, it is shown that the neglect of charge recombination has led to a misunderstanding of experimental results in terms of a time-dependent mobility relaxation.
Das Strahlungsfeld in einem absorbierenden, periodischen Dielektrikum ist kanonisch quantisiert worden. Dabei wurde ein eindimensionales Modell mit punktförmigen Streuern betrachtet, deren Polarisierbarkeit den Kramers-Kronig Relationen gehorcht. Es wurde ein Quantisierungsverfahren nach Knöll, Scheel und Welsch [1] verwendet, das als eine Ergänzung zum mikroskopischen Huttner-Barnett Schema [2] aufgefaßt werden kann und in dem auf der Basis der phänomenologischen Maxwell Gleichungen eine bosonische Rauschpolarisation als die Quelle des Feldes auftritt. Das Problem reduziert sich dabei auf die Bestimmung der klassischenGreens Funktion. Die Kramers-Kronig Relationen der komplexen Polarisierbarkeit der Punktstreuer sichert die korrekte Verknüpfung zwischen Dispersion und Absorption. Der Punktstreuer ist dabei ein idealisiertes Modell, um periodische Hintergrundmedien, denen das Strahlungsfeld ausgesetzt ist, zu beschreiben. Er bedarf jedoch eines Kompromisses, um die entsprechenden Rauschquellen zu konstruieren. Es konnte gezeigt werden, daß der Punktstreuer dasselbe Streuverhalten wie eine dünne Potentialschwelle besitzt und damit die technischen Schwierigkeiten für den Fall eines absorptiven Punktstreuers überwunden werden können. An Hand dieses Beispiels konnte das Quantisierungsschema nach Knöll, Scheel und Welsch auf periodische und absorbierende Strukturen angewendet werden. Es ist bekannt, daß die Bestimmung der Modenstruktur für den Fall der Modenzerlegung des Strahlungsfeldes ein rein klassisches Problem darstellt. Mit Ausnahme des Vakuums ist eine zweckmäßige Modenzerlegung nur dann durchführbar, wenn mit einer reellen Polarisierbarkeit die Absorption vernachlässigt werden kann. Aus den Kramers-Kronig Relationen wird klar, daß solch eine Annahme nur in bestimmten Intervallen des Frequenzspektrums gerechtfertigt werden kann. Es wurde gezeigt, daß auch das quantisierte Strahlungsfeld in Anwesenheit der Punktstreuer in eben solchen Intervallen in Quasimoden entwickelt werden kann, wenn man neue Quasioperatoren als Erzeuger und Vernichter einführt. Die bosonischen Vertauschungsrelationen dieser Operatoren konnten bestätigt werden. Die allgemeine Vertauschungsrelation kanonisch konjugierter Variablen im Sinne der kanonischen Quantisierung kann für das elektrische Feld und das Vektorpotential beibehalten werden. In der Greens Funktion sind sämtliche Informationen über die dispersiven und absorptiven Eigenschaften des Dielektrikums sowie über die räumliche Struktur enthalten. Die wesentlichen Merkmale werden dabei durch den Reflexionskoeffizienten nach Boedecker und Henkel [3] bestimmt, der das Reflexionsverhalten an einem unendlich ausgedehnten Halbraum aus periodisch angeordneten Punktstreuern beschreibt. Mit Hilfe des Transfermatrixformalismus war es möglich einen allgemeinen Zugang zum Reflexionsverhalten zunächst endlicher Strukturen zu erhalten. Die Ausdehnung auf den Halbraum mit Hilfe der Klassifizierung in Untergruppen der Transfermatrizen nach ermöglichte es, den Reflexionskoeffizienten nach Boedecker und Henkel [3] auch geometrisch plausibel zu machen. Ein wesentlicher Aspekt von periodischen Systemen ist die Translationssymmetrie, die im Fall unendlich ausgedehnter, verlustfreier Systeme auf eine ideale Bandstruktur führt. Mit Hilfe der Untergruppenklassifizierung kann im verlustfreien Fall die Geometrie der Anordnung indirekt mit der Bandstruktur verknüpft werden. Es konnte nachgewiesen werden, daß auch der einzelne Punktstreuer immer in einer dieser Untergruppen zu finden ist. Dabei besitzt die Bandstruktur der unendlich periodischen Anordnung dieser Streuer immer eine von der Polarisierbarkeit abhängige Bandkante und eine von der Polarisierbarkeit unabhängige Bandkante. Die Bandstruktur, die mit den verlustbehafteten Feldern einhergeht, ist eine doppelt komplexe. Alternativ zu dieser nur schwer zu interpretierenden Bandstruktur wurden die Feldfluktuationen selektiv nach reellen Frequenzen und Wellenzahlen sondiert. Es zeigt sich, daß Absorption besonders in der Nähe der Bandkanten die Bänder verbreitert. Die Ergebnisse, die mit Hilfe der lokalen Zustandsdichtefunktion gewonnen wurden, konnten dabei bestätigt werden. [1] S. Scheel, L. Knöll and D. G. Welsch, Phys.Rev. A 58, 700 (1998). [2] B. Huttner and S. M. Barnett, Phys. Rev. A 46, 4306 (1992). [3] G. Boedecker and C. Henkel, OPTICS EXPRESS 11, 1590 (2003).
This thesis investigates the Casimir effect between plates made of normal and superconducting metals over a broad range of temperatures, as well as the Casimir-Polder interaction of an atom to such a surface. Numerical and asymptotical calculations have been the main tools in order to do so. The optical properties of the surfaces are described by dielectric functions or optical conductivities, which are reviewed for common models and have been analyzed with special weight on distributional properties and causality. The calculation of the Casimir energy between two normally conducting plates (cavity) is reviewed and previous work on the contribution to the Casimir energy due to the surface plasmons, present in all metallic cavities, has been generalized to finite temperatures for the first time. In the field of superconductivity, a new analytical continuation of the BCS conductivity to to purely imaginary frequencies has been obtained both inside and outside the extremely dirty limit of vanishing mean free path. The Casimir free energy calculated from this description was shown to coincide well with the values obtained from the two fluid model of superconductivity in certain regimes of the material parameters. The Casimir entropy in a superconducting cavity fulfills the third law of thermodynamics and features a characteristic discontinuity at the phase transition temperature. These effects were equally encountered in the Casimir-Polder interaction of an atom with a superconducting wall. The magnetic dipole coupling of an atom to a metal was shown to be highly sensible to dissipation and especially to the surface currents. This leads to a strong quenching of the magnetic Casimir-Polder energy at finite temperature. Violations of the third law of thermodynamics are encountered in special models, similar to phenomena in the Casimir-effect between two plates, that are debated controversely. None of these effects occurs in the analog electric dipole interaction. The results of this work suggest to reestablish the well-known plasma model as the low temperature limit of a superconductor as in London theory rather than use it for the description of normal metals. Superconductors offer the opportunity to control the dissipation of surface currents to a great extent. This could be used to access experimentally the low frequency optical response of metals, which is strongly connected to the thermal Casimir-effect. Here, differently from corresponding microwave experiments, energy and momentum are independent quantities. A measurement of the total Casimir-Polder interaction of atoms with superconductors seems to be in reach in today’s microchip-based atom-traps and the contribution due to magnetic coupling might be accessed by spectroscopic techniques
In this thesis, the properties of nonlinear disordered one dimensional lattices is investigated. Part I gives an introduction to the phenomenon of Anderson Localization, the Discrete Nonlinear Schroedinger Equation and its properties as well as the generalization of this model by introducing the nonlinear index α. In Part II, the spreading behavior of initially localized states in large, disordered chains due to nonlinearity is studied. Therefore, different methods to measure localization are discussed and the structural entropy as a measure for the peak structure of probability distributions is introduced. Finally, the spreading exponent for several nonlinear indices is determined numerically and compared with analytical approximations. Part III deals with the thermalization in short disordered chains. First, the term thermalization and its application to the system in use is explained. Then, results of numerical simulations on this topic are presented where the focus lies especially on the energy dependence of the thermalization properties. A connection with so-called breathers is drawn.
In normal everyday viewing, we perform large eye movements (saccades) and miniature or fixational eye movements. Most of our visual perception occurs while we are fixating. However, our eyes are perpetually in motion. Properties of these fixational eye movements, which are partly controlled by the brainstem, change depending on the task and the visual conditions. Currently, fixational eye movements are poorly understood because they serve the two contradictory functions of gaze stabilization and counteraction of retinal fatigue. In this dissertation, we investigate the spatial and temporal properties of time series of eye position acquired from participants staring at a tiny fixation dot or at a completely dark screen (with the instruction to fixate a remembered stimulus); these time series were acquired with high spatial and temporal resolution. First, we suggest an advanced algorithm to separate the slow phases (named drift) and fast phases (named microsaccades) of these movements, which are considered to play different roles in perception. On the basis of this identification, we investigate and compare the temporal scaling properties of the complete time series and those time series where the microsaccades are removed. For the time series obtained during fixations on a stimulus, we were able to show that they deviate from Brownian motion. On short time scales, eye movements are governed by persistent behavior and on a longer time scales, by anti-persistent behavior. The crossover point between these two regimes remains unchanged by the removal of microsaccades but is different in the horizontal and the vertical components of the eyes. Other analyses target the properties of the microsaccades, e.g., the rate and amplitude distributions, and we investigate, whether microsaccades are triggered dynamically, as a result of earlier events in the drift, or completely randomly. The results obtained from using a simple box-count measure contradict the hypothesis of a purely random generation of microsaccades (Poisson process). Second, we set up a model for the slow part of the fixational eye movements. The model is based on a delayed random walk approach within the velocity related equation, which allows us to use the data to determine control loop durations; these durations appear to be different for the vertical and horizontal components of the eye movements. The model is also motivated by the known physiological representation of saccade generation; the difference between horizontal and vertical components concurs with the spatially separated representation of saccade generating regions. Furthermore, the control loop durations in the model suggest an external feedback loop for the horizontal but not for the vertical component, which is consistent with the fact that an internal feedback loop in the neurophysiology has only been identified for the vertical component. Finally, we confirmed the scaling properties of the model by semi-analytical calculations. In conclusion, we were able to identify several properties of the different parts of fixational eye movements and propose a model approach that is in accordance with the described neurophysiology and described limitations of fixational eye movement control.
The Sun is a star, which due to its proximity has a tremendous influence on Earth. Since its very first days mankind tried to "understand the Sun", and especially in the 20th century science has uncovered many of the Sun's secrets by using high resolution observations and describing the Sun by means of models. As an active star the Sun's activity, as expressed in its magnetic cycle, is closely related to the sunspot numbers. Flares play a special role, because they release large energies on very short time scales. They are correlated with enhanced electromagnetic emissions all over the spectrum. Furthermore, flares are sources of energetic particles. Hard X-ray observations (e.g., by NASA's RHESSI spacecraft) reveal that a large fraction of the energy released during a flare is transferred into the kinetic energy of electrons. However the mechanism that accelerates a large number of electrons to high energies (beyond 20 keV) within fractions of a second is not understood yet. The thesis at hand presents a model for the generation of energetic electrons during flares that explains the electron acceleration based on real parameters obtained by real ground and space based observations. According to this model photospheric plasma flows build up electric potentials in the active regions in the photosphere. Usually these electric potentials are associated with electric currents closed within the photosphere. However as a result of magnetic reconnection, a magnetic connection between the regions of different magnetic polarity on the photosphere can establish through the corona. Due to the significantly higher electric conductivity in the corona, the photospheric electric power supply can be closed via the corona. Subsequently a high electric current is formed, which leads to the generation of hard X-ray radiation in the dense chromosphere. The previously described idea is modelled and investigated by means of electric circuits. For this the microscopic plasma parameters, the magnetic field geometry and hard X-ray observations are used to obtain parameters for modelling macroscopic electric components, such as electric resistors, which are connected with each other. This model demonstrates that such a coronal electric current is correlated with large scale electric fields, which can accelerate the electrons quickly up to relativistic energies. The results of these calculations are encouraging. The electron fluxes predicted by the model are in agreement with the electron fluxes deduced from the measured photon fluxes. Additionally the model developed in this thesis proposes a new way to understand the observed double footpoint hard X-ray sources.
Giant vesicles may contain several spatial compartments formed by phase separation within their enclosed aqueous solution. This phenomenon might be related to molecular crowding, fractionation and protein sorting in cells. To elucidate this process we used two chemically dissimilar polymers, polyethylene glycol (PEG) and dextran, encapsulated in giant vesicles. The dynamics of the phase separation of this polymer solution enclosed in vesicles is studied by concentration quench, i.e. exposing the vesicles to hypertonic solutions. The excess membrane area, produced by dehydration, can either form tubular structures (also known as tethers) or be utilized to perform morphological changes of the vesicle, depending on the interfacial tension between the coexisting phases and those between the membrane and the two phases. Membrane tube formation is coupled to the phase separation process. Apparently, the energy released from the phase separation is utilized to overcome the energy barrier for tube formation. The tubes may be absorbed at the interface to form a 2-demensional structure. The membrane stored in the form of tubes can be retracted under small tension perturbation. Furthermore, a wetting transition, which has been reported only in a few experimental systems, was discovered in this system. By increasing the polymer concentration, the PEG-rich phase changed from complete wetting to partial wetting of the membrane. If sufficient excess membrane area is available in the vesicle where both phases wet the membrane, one of the phases will bud off from the vesicle body, which leads to the separation of the two phases. This wetting-induced budding is governed by the surface energy and modulated by the membrane tension. This was demonstrated by micropipette aspiration experiments on vesicles encapsulating two phases. The budding of one phase can significantly decrease the surface energy by decreasing the contact area between the coexisting phases. The elasticity of the membrane allows it to adjust its tension automatically to balance the pulling force exerted by the interfacial tension of the two liquid phases at the three-phase contact line. The budding of the phase enriched with one polymer may be relevant to the selective protein transportation among lumens by means of vesicle in cells.
Supernovae are known to be the dominant energy source for driving turbulence in the interstellar medium. Yet, their effect on magnetic field amplification in spiral galaxies is still poorly understood. Analytical models based on the uncorrelated-ensemble approach predicted that any created field will be expelled from the disk before a significant amplification can occur. By means of direct simulations of supernova-driven turbulence, we demonstrate that this is not the case. Accounting for vertical stratification and galactic differential rotation, we find an exponential amplification of the mean field on timescales of 100Myr. The self-consistent numerical verification of such a “fast dynamo” is highly beneficial in explaining the observed strong magnetic fields in young galaxies. We, furthermore, highlight the importance of rotation in the generation of helicity by showing that a similar mechanism based on Cartesian shear does not lead to a sustained amplification of the mean magnetic field. This finding impressively confirms the classical picture of a dynamo based on cyclonic turbulence.