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Molecules are often naturally embedded in a complex environment. As a consequence, characteristic properties of a molecular subsystem can be substantially altered or new properties emerge due to interactions between molecular and environmental degrees of freedom. The present thesis is concerned with the numerical study of quantum dynamical and stationary properties of molecular vibrational systems embedded in selected complex environments.
In the first part, we discuss "strong-coupling" model scenarios for molecular vibrations interacting with few quantized electromagnetic field modes of an optical Fabry-Pérot cavity. We thoroughly elaborate on properties of emerging "vibrational polariton" light-matter hybrid states and examine the relevance of the dipole self-energy. Further, we identify cavity-induced quantum effects and an emergent dynamical resonance in a cavity-altered thermal isomerization model, which lead to significant suppression of thermal reaction rates. Moreover, for a single rovibrating diatomic molecule in an optical cavity, we observe non-adiabatic signatures in dynamics due to "vibro-polaritonic conical intersections" and discuss spectroscopically accessible "rovibro-polaritonic" light-matter hybrid states.
In the second part, we study a weakly coupled but numerically challenging quantum mechanical adsorbate-surface model system comprising a few thousand surface modes. We introduce an efficient construction scheme for a "hierarchical effective mode" approach to reduce the number of surface modes in a controlled manner. In combination with the multilayer multiconfigurational time-dependent Hartree (ML-MCTDH) method, we examine the vibrational adsorbate relaxation dynamics from different excited adsorbate states by solving the full non-Markovian system-bath dynamics for the characteristic relaxation time scale. We examine half-lifetime scaling laws from vibrational populations and identify prominent non-Markovian signatures as deviations from Markovian reduced system density matrix theory in vibrational coherences, system-bath entanglement and energy transfer dynamics.
In the final part of this thesis, we approach the dynamics and spectroscopy of vibronic model systems at finite temperature by formulating the ML-MCTDH method in the non-stochastic framework of thermofield dynamics. We apply our method to thermally-altered ultrafast internal conversion in the well-known vibronic coupling model of pyrazine. Numerically beneficial representations of multilayer wave functions ("ML-trees") are identified for different temperature regimes, which allow us to access thermal effects on both electronic and vibrational dynamics as well as spectroscopic properties for several pyrazine models.
Carbohydrates are found in every living organism, where they are responsible for numerous, essential biological functions and processes. Synthetic polymers with pendant saccharides, called glycopolymers, mimic natural glycoconjugates in their special properties and functions. Employing such biomimetics furthers the understanding and controlling of biological processes. Hence, glycopolymers are valuable and interesting for applications in the medical and biological field. However, the synthesis of carbohydrate-based materials can be very challenging. In this thesis, the synthesis of biofunctional glycopolymers is presented, with the focus on aqueous-based, protecting group free and short synthesis routes to further advance in the field of glycopolymer synthesis.
A practical and versatile precursor for glycopolymers are glycosylamines. To maintain biofunctionality of the saccharides after their amination, regioselective functionalization was performed. This frequently performed synthesis was optimized for different sugars. The optimization was facilitated using a design of experiment (DoE) approach to enable a reduced number of necessary experiments and efficient procedure. Here, the utility of using DoE for optimizing the synthesis of glycosylamines is discussed.
The glycosylamines were converted to glycomonomers which were then polymerized to yield biofunctional glycopolymers. Here, the glycopolymers were aimed to be applicable as layer-by-layer (LbL) thin film coatings for drug delivery systems. To enable the LbL technique, complimentary glycopolymer electrolytes were synthesized by polymerization of the glycomonomers and subsequent modification or by post-polymerization modification. For drug delivery, liposomes were embedded into the glycopolymer coating as potential cargo carriers. The stability as well as the integrity of the glycopolymer layers and liposomes were investigated at physiological pH range.
Different glycopolymers were also synthesized to be applicable as anti-adhesion therapeutics by providing advanced architectures with multivalent presentations of saccharides, which can inhibit the binding of pathogene lectins. Here, the synthesis of glycopolymer hydrogel particles based on biocompatible poly(N-isopropylacrylamide) (NiPAm) was established using the free-radical precipitation polymerization technique. The influence of synthesis parameters on the sugar content in the gels and on the hydrogel morphology is discussed. The accessibility of the saccharides to model lectins and their enhanced, multivalent interaction were investigated.
At the end of this work, the synthesis strategies for the glycopolymers are generally discussed as well as their potential application in medicine.
This thesis deals with the synthesis of protein and composite protein-mineral microcapsules by the application of high-intensity ultrasound at the oil-water interface. While one system is stabilized by BSA molecules, the other system is stabilized by different nanoparticles modified with BSA. A comprehensive study of all synthesis stages as well as of resulting capsules were carried out and a plausible explanation of the capsule formation mechanism was proposed. During the formation of BSA microcapsules, the protein molecules adsorb firstly at the O/W interface and unfold there forming an interfacial network stabilized by hydrophobic interactions and hydrogen bonds between neighboring molecules. Simultaneously, the ultrasonic treatment causes the cross-linking of the BSA molecules via the formation of intermolecular disulfide bonds. In this thesis, the experimental evidences of ultrasonically induced cross-linking of the BSA in the shells of protein-based microcapsules are demonstrated. Therefore, the concept proposed many years ago by Suslick and co-workers is confirmed by experimental evidences for the first time. Moreover, a consistent mechanism for the formation of intermolecular disulfide bonds in capsule shells is proposed that is based on the redistribution of thiol and disulfide groups in BSA under the action of high-energy ultrasound. The formation of composite protein-mineral microcapsules loaded with three different oils and shells composed of nanoparticles was also successful. The nature of the loaded oil and the type of nanoparticles in the shell, had influence on size and shape of the microcapsules. The examination of the composite capsule revealed that the BSA molecules adsorbed on the nanoparticles surface in the capsule shell are not cross-linked by intermolecular disulfide bonds. Instead, a Pickering emulsion formation takes place. The surface modification of composite microcapsules through both pre-modification of main components and also the post-modification of the surface of ready composite microcapsules was successfully demonstrated. Additionally, the mechanical properties of protein and composite protein-mineral microcapsules were compared. The results showed that the protein microcapsules are more resistant to elastic deformation.
The doctoral thesis presented provides a comprehensive view of laser-based ablation techniques promoted to new fields of operation, including, but not limited to, size, composition, and concentration analyses. It covers various applications of laser ablation techniques over a wide range of sizes, from single molecules all the way to aerosol particles. The research for this thesis started with broadening and deepening the field of application and the fundamental understanding of liquid-phase IR-MALDI. Here, the hybridization of ion mobility spectrometry and microfluidics was realized by using IR-MALDI as the coupling technique for the first time. The setup was used for monitoring the photocatalytic performance of the E-Z isomerization of olefins. Using this hybrid, measurement times were so drastically reduced that such photocatalyst screenings became a matter of minutes rather than hours. With this on hand, triple measurements screenings could not only be performed within ten minutes, but also with a minimum amount of resources highlighting its potential as a green chemistry alternative to batch-sized reactions. Along the optimizing process of the IR-MALDI source for microfluidics came its application for another liquid sample supply method, the hanging drop. This demarcated one of the first applications of IR-MALDI for the charging of sub-micron particles directly from suspensions via their gas-phase transfer, followed by their characterization with differential mobility analysis. Given the high spectral quality of the data up to octuply charged particles became experimentally accessible, this laid the foundation for deriving a new charge distribution model for IR-MALDI in that size regime. Moving on to even larger analyte sizes, LIBS and LII were employed as ablation techniques for the solid phase, namely the aerosol particles themselves. Both techniques produce light-emitting events and were used to quantify and classify different aerosols. The unique configuration of stroboscopic imaging, photoacoustics, LII, and LIBS measurements opened new realms for analytical synergies and their potential application in industry. The concept of using low fluences, below 100 J/cm2, and high repetition rates of up to 500 Hz for LIBS makes for an excellent phase-selective LIBS setup. This concept was combined with a new approach to the photoacoustic normalization of LIBS. Also, it was possible to acquire statistically relevant amounts of data in a matter of seconds, showing its potential as a real-time optimization technique. On the same time axis, but at much lower fluences, LII was used with a similar methodology to quickly quantify and classify airborne particles of different compositions. For the first time, aerosol particles were evaluated on their LII susceptibility by using a fluence screening approach.
Two approaches for the synthesis of prenylated isoflavones were explored: the 2,3-oxidative rearrangement/cross metathesis approach, using hypervalent iodine reagents as oxidants and the Suzuki-Miyaura cross-coupling/cross metathesis approach. Three natural prenylated isoflavones: 5-deoxy-3′-prenylbiochanin A (59), erysubin F (61) and 7-methoxyebenosin (64), and non-natural analogues: 7,4′-dimethoxy-8,3′-diprenylisoflavone (126j) and 4′-hydroxy-7-methoxy-8,3′-diprenylisoflavone (128) were synthesized for the first time via the 2,3-oxidative rearrangement/cross metathesis approach, using mono- or diallylated flavanones as key intermediates. The reaction of flavanones with hypervalent iodine reagents afforded isoflavones via a 2,3-oxidative rearrangement and the corresponding flavone isomers via a 2,3-dehydrogenation. This afforded the synthesis of 7,4′-dimethoxy-8-prenylflavone (127g), 7,4′-dimethoxy-8,3′-diprenylflavone (127j), 7,4′-dihydroxy-8,3′-diprenylflavone (129) and 4′-hydroxy-7-methoxy-8,3′-diprenylflavone (130), the non-natural regioisomers of 7-methoxyebenosin, 126j, erysubin F and 128 respectively. Three natural prenylated isoflavones: 3′-prenylbiochanin A (58), neobavaisoflavone (66) and 7-methoxyneobavaisoflavone (137) were synthesized for the first time using the Suzuki-Miyaura cross-coupling/cross metathesis approach. The structures of 3′-prenylbiochanin A (58) and 5-deoxy-3′-prenylbiochanin A (59) were confirmed by single crystal X-ray diffraction analysis. The 2,3-oxidative rearrangement approach appears to be limited to the substitution pattern on both rings A and B of the flavanone while the Suzuki-Miyaura cross-coupling approach appears to be the most suitable for the synthesis of simple isoflavones or prenylated isoflavones whose prenyl substituents or allyl groups, the substituents that are essential precursors for the prenyl side chains, can be regioselectively introduced after the construction of the isoflavone core.
The chalcone-flavanone hybrids 146, 147 and 148, hybrids of the naturally occurring bioactive flavanones liquiritigenin-7-methyl ether, liquiritigenin and liquiritigenin-4′-methyl ether respectively were also synthesized for the first time, using Matsuda-Heck arylation and allylic/benzylic oxidation as key steps.
The intermolecular interactions of 5-deoxy-3′-prenylbiochanin A (59) and its two closely related precursors 106a and 106b was investigated by single crystal and Hirshfeld surface analyses to comprehend their different physicochemical properties. The results indicate that the presence of strong intermolecular O-H···O hydrogen bonds and an increase in the number of π-stacking interactions increases the melting point and lowers the solubility of isoflavone derivatives. However, the strong intermolecular O-H···O hydrogen bonds have a greater effect than the π-stacking interactions.
5-Deoxy-3′-prenylbiochanin A (59), erysubin F (61) and 7,4′-dihydroxy-8,3′-diprenylflavone (129), were tested against three bacterial strains and one fungal pathogen. All the three compounds were inactive against Salmonella enterica subsp. enterica (NCTC 13349), Escherichia coli (ATCC 25922), and Candida albicans (ATCC 90028), with MIC values greater than 80.0 μM. The diprenylated isoflavone erysubin F (61) and its flavone isomer 129 showed in vitro activity against methicillin-resistant Staphylococcus aureus (MRSA, ATCC 43300) at MIC values of 15.4 and 20.5 μM, respectively. 5-Deoxy-3′-prenylbiochanin A (59) was inactive against this MRSA strain. Erysubin F (61) and its flavone isomer 129 could serve as lead compounds for the development of new alternative drugs for the treatment of MRSA infections.
One aspect of achieving a more sustainable chemical industry is the minimization of the usage of solvents and chemicals. Thus, optimization and development of chemical processes for large-scale production is favourably performed in small batches. The critical step in this approach is upscaling the batches from the small reaction systems to the large reactors mandatory for cost efficient production in an industrial environment. Scaling up the bulk volume always goes along with increasing the surface where the reaction medium is in contact with the confining vessel. Since volume scales proportional with the cubic dimension while the surface scales quadratic, their ratio is size-dependent. The influence of reaction vessel walls can change the reaction performance. A number of phenomena occurring at the surface-liquid interface can affect reaction rates and yields, resulting in possible difficulties in predicting and extrapolating from small size production scale to large industrial processes. The application of levitated droplets as a containerless reaction vessels provides a promising possibility to avoid the above-mentioned issues.
In the presented work, an efficient coupling of acoustically levitated droplets to an ion mobility (IM) spectrometer, operating at ambient conditions, was designed for real-time monitoring of chemical reactions. The design of the system comprises noncontact sampling and ionization of the droplet realised by laser desorption/ionization at 2,94 µm. The scope of the work includes fundamental studies covering understanding of laser irradiation of droplets enclosed in an acoustical field. Understanding of this phenomenon is crucial to comprehending the effects of temporal and spatial resolution of the generated ion plume that influence the resolution of the system.
The set-up includes an acoustic trap, laser irradiation and ion manipulation electrostatic lenses operating at high voltage at ambient pressure. The complexity of the design needs to fully be considered for an effective ion transfer at the interface region between the levitated droplet and IM spectrometer. For sampling and ionization, two distinct laser pulse lengths were evaluated, ns and µs. Irradiation via µs laser pulses provides several advantages: i) the droplet volume is not extensively impinged, as in case of ns laser pulses, allowing the sampling of only the small volume of the droplet; ii) the lower fluence results in less pronounced oscillations of the droplet confined in the acoustic field. The droplet will not be dissipated out of the acoustic field leading to loss of the sample; iii) the mild laser irradiation results in better spatial and temporal ion plume confinement, leading to better resolution of the detected ion packets. Finally, this knowledge allows the application of ion optics necessary to induce ion flow between the droplet suspended in the acoustic field and the IM spectrometer. The ion optics, composed of 2 electrostatic lenses placed in the near vicinity of the droplet, allow effective focusing of the ion plume and its redirection directly to the IM spectrometer entrance. This novel coupling has proved to be successful for detection of some simple molecules ionizable at the 2.94 µm wavelength. To further demonstrate the applicability of the system, a proof-of-principle reaction was selected, fulfilling the requirements of the system, and was subjected to comprehensive investigation of its performance. Herein, the reaction between N-Boc cysteine methyl ester and allyl alcohol has been performed in a batch reactor and on-line monitored via 1H NMR to establish reaction propagation. With the additional assessment, it was confirmed that the thiol-ene coupling can be performed within first 20 minutes of the irradiation with a reaction yield above 50%, proving that the reaction can be applied as a study case to assess the possibilities of the developed system.
The numerous applications of rare earth elements (REE) has lead to a growing global demand and to the search for new REE deposits. One promising technique for exploration of these deposits is laser-induced breakdown spectroscopy (LIBS). Among a number of advantages of the technique is the possibility to perform on-site measurements without sample preparation. Since the exploration of a deposit is based on the analysis of various geological compartments of the surrounding area, REE-bearing rock and soil samples were analyzed in this work. The field samples are from three European REE deposits in Sweden and Norway. The focus is on the REE cerium, lanthanum, neodymium and yttrium. Two different approaches of data analysis were used for the evaluation. The first approach is univariate regression (UVR). While this approach was successful for the analysis of synthetic REE samples, the quantitative analysis of field samples from different sites was influenced by matrix effects. Principal component analysis (PCA) can be used to determine the origin of the samples from the three deposits. The second approach is based on multivariate regression methods, in particular interval PLS (iPLS) regression. In comparison to UVR, this method is better suited for the determination of REE contents in heterogeneous field samples. View Full-Text
The development of novel programmable materials aiming to control friction in real-time holds potential to facilitate innovative lubrication solutions for reducing wear and energy losses. This work describes the integration of light-responsiveness into two lubricating materials, silicon oils and polymer brush surfaces.
The first part focusses on the assessment on 9-anthracene ester-terminated polydimethylsiloxanes (PDMS-A) and, in particular, on the variability of rheological properties and the implications that arise with UV-light as external trigger. The applied rheometer setup contains an UV-transparent quartz-plate, which enables radiation and simultaneous measurement of the dynamic moduli. UV-A radiation (354 nm) triggers the cycloaddition reaction between the terminal functionalities of linear PDMS, resulting in chain extension. The newly-formed anthracene dimers cleave by UV-C radiation (254 nm) or at elevated temperatures (T > 130 °C). The sequential UV-A radiation and thermal reprogramming over three cycles demonstrate high conversions and reproducible programming of rheological properties. In contrast, the photochemical back reaction by UV-C is incomplete and can only partially restore the initial rheological properties. The dynamic moduli increase with each cycle in photochemical programming, presumably resulting from a chain segment re-arrangement as a result of the repeated partial photocleavage and subsequent chain length-dependent dimerization. In addition, long periods of radiation cause photooxidative degradation, which damages photo-responsive functions and consequently reduces the programming range. The absence of oxygen, however, reduces undesired side reactions. Anthracene-functionalized PDMS and native PDMS mix depending on the anthracene ester content and chain length, respectively, and allow fine-tuning of programmable rheological properties. The work shows the influence of mixing conditions during the photoprogramming step on the rheological properties, indicating that material property gradients induced by light attenuation along the beam have to be considered. Accordingly, thin lubricant films are suggested as potential application for light-programmable silicon fluids.
The second part compares strategies for the grafting of spiropyran (SP) containing copolymer brushes from Si wafers and evaluates the light-responsiveness of the surfaces. Pre-experiments on the kinetics of the thermally initiated RAFT copolymerization of 2-hydroxyethyl acrylate (HEA) and spiropyran acrylate (SPA) in solution show, first, a strong retardation by SP and, second, the dependence of SPA polymerization on light. Surprisingly, the copolymerization of SPA is inhibited in the dark. These findings contribute to improve the synthesis of polar, spiropyran-containing copolymers. The comparison between initiator systems for the grafting-from approach indicates PET-RAFT superior to thermally initiated RAFT, suggesting a more efficient initiation of surface-bound CTA by light. Surface-initiated polymerization via PET-RAFT with an initiator system of EosinY (EoY) and ascorbic acid (AscA) facilitates copolymer synthesis from HEA and 5-25 mol% SPA. The resulting polymer film with a thickness of a few nanometers was detected by atomic force microscopy (AFM) and ellipsometry. Water contact angle (CA) measurements demonstrate photo-switchable surface polarity, which is attributed to the photoisomerization between non-polar spiropyran and zwitterionic merocyanine isomer. Furthermore, the obtained spiropyran brushes show potential for further studies on light-programmable properties. In this context, it would be interesting to investigate whether swollen spiropyran-containing polymers change their configuration and thus their film thickness under the influence of light. In addition, further experiments using an AFM or microtribometer should evaluate whether light-programmable solvation enables a change in frictional properties between polymer brush surfaces.
Proteine erfüllen bei einer Vielzahl von Prozessen eine essenzielle Rolle. Um diese Funktionsweisen zu verstehen, bedarf es der Aufklärung derer Struktur und deren Bindungsverhaltens mit anderen Molekülen wie Proteinen, Peptiden, Kohlenhydraten oder kleinen Molekülen. Im ersten Teil dieser Arbeit wurden der Wildtyp und die Punktmutante N126W eines Kohlenhydrat-bindenden Proteins aus dem hitzestabilen Bakterium C. thermocellum untersucht, welches Teil eines Komplexes ist, der Kohlenhydrate wie Cellulose erkennen, binden und abbauen kann. Dazu wurde dieses Protein mit E.coli Bakterien hergestellt und durch Metallchelat- und Größenausschlusschromatographie gereinigt. Die Proteine konnten isotopenmarkiert mittels Kernspinresonanz-Spektroskopie (NMR) untersucht werden. H/D-Austauschexperimente zeigten leicht und schwer zugängliche Stellen im Protein für eine mögliche Ligandenwechselwirkung. Anschließend konnte eine Interaktion beider Proteine mit Cellulosefragmenten festgestellt werden. Diese interagieren über zwischenmolekulare Kräfte mit den Seitenketten von aromatischen Aminosäuren und über Wasserstoffbrückenbindungen mit anderen Resten. Weiterhin wurde die Calcium-Bindestelle analysiert und es konnte gezeigt werden, das diese nach der Proteinherstellung mit einem Calcium-Ion besetzt ist und dieses mit dem Komplexbildner EDTA entfernbar ist, jedoch wieder reversibel besetzt werden kann. Zum Schluss wurde mittels zweier Methoden versucht (grafting from und grafting to), das Protein mit einem temperatursensorischen Polymer (Poly-N-Isopropylacrylamid) zu koppeln, um so Eigenschaften wie Löslichkeit oder Stabilität zu beeinflussen. Es zeigte sich, das während die grafting from Methode (Polymer wächst direkt vom Protein) zu einer teilweisen Entfaltung und Destabilisierung des Proteins führte, bei der grafting to Methode (Polymer wird separat hergestellt und dann an das Protein gekoppelt) das Protein seine Stabilität behielt und nur wenige Polymerketten angebaut waren. Der zweite Teil dieser Arbeit beschäftigte sich mit der Interaktion von zwei LIM-Domänen des Proteins Paxillin und der zytoplasmatischen Domäne der Peptide Integrin-β1 und Integrin-β3. Diese spielen eine wichtige Rolle bei der Bewegung von Zellen. Dabei interagieren sie mit einer Vielzahl an anderen Proteinen, um fokale Adhäsionen (Multiproteinkomplexe) zu bilden. Bei der Herstellung des Peptids Integrin-β3 zeigte sich durch Größenausschlusschromatographie und Massenspektrometrie ein Abbau, bei dem verschiedene Aminosäuregruppen abgespalten werden. Dieser konnte durch eine Zugabe des Serinprotease-Inhibitors AEBSF verhindert werden. Anschließend wurde die direkte Interaktion der Proteine untereinander mittels NMR untersucht. Dabei zeigte sich, das Integrin-β1 und Integrin-β3 an die gleiche Position binden, nämlich an den flexiblen Loop der LIM3-Domäne von Paxillin. Die Dissoziationskonstanten zeigten, dass Integrin-β1 mit einer zirka zehnfach höheren Affinität im Vergleich zu Integrin-β3 an Paxillin bindet. Während Paxillins Bindestelle an Integrin-β1 in der Mitte des Peptids liegt, ist bei Integrin-β3 der C-Terminus essenziell. Daher wurden die drei C-terminalen Aminosäuren entfernt und erneut Bindungsstudien durchgeführt, welche gezeigt haben, das die Affinität dadurch fast vollständig unterbunden wurde. Final wurde der flexible Loop der LIM3-Domäne in zwei andere Aminosäuresequenzen mutiert, um die Bindung auf der Paxillin-Seite auszulöschen. Jedoch zeigten sowohl Zirkulardichroismus-Spektroskopie als auch NMR-Spektroskopie, dass die Mutationen zu einer teilweisen Entfaltung der Domäne geführt haben und somit nicht als geeignete Kandidaten für diese Studien identifiziert werden konnten.
Janus droplets were prepared by vortex mixing of three non-mixable liquids, i.e., olive oil, silicone oil and water, in the presence of gold nanoparticles (AuNPs) in the aqueous phase and magnetite nanoparticles (MNPs) in the olive oil. The resulting Pickering emulsions were stabilized by a red-colored AuNP layer at the olive oil/water interface and MNPs at the oil/oil interface. The core–shell droplets can be stimulated by an external magnetic field. Surprisingly, an inner rotation of the silicon droplet is observed when MNPs are fixed at the inner silicon droplet interface. This is the first example of a controlled movement of the inner parts of complex double emulsions by magnetic manipulation via interfacially confined magnetic nanoparticles.