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Hepcidin-25 (Hep-25) plays a crucial role in the control of iron homeostasis. Since the dysfunction of the hepcidin pathway leads to multiple diseases as a result of iron imbalance, hepcidin represents a potential target for the diagnosis and treatment of disorders of iron metabolism. Despite intense research in the last decade targeted at developing a selective immunoassay for iron disorder diagnosis and treatment and better understanding the ferroportin-hepcidin interaction, questions remain. The key to resolving these underlying questions is acquiring exact knowledge of the 3D structure of native Hep-25. Since it was determined that the N-terminus, which is responsible for the bioactivity of Hep-25, contains a small Cu(II)-binding site known as the ATCUN motif, it was assumed that the Hep-25-Cu(II) complex is the native, bioactive form of the hepcidin. This structure has thus far not been elucidated in detail. Owing to the lack of structural information on metal-bound Hep-25, little is known about its possible biological role in iron metabolism. Therefore, this work is focused on structurally characterizing the metal-bound Hep-25 by NMR spectroscopy and molecular dynamics simulations. For the present work, a protocol was developed to prepare and purify properly folded Hep-25 in high quantities. In order to overcome the low solubility of Hep-25 at neutral pH, we introduced the C-terminal DEDEDE solubility tag. The metal binding was investigated through a series of NMR spectroscopic experiments to identify the most affected amino acids that mediate metal coordination. Based on the obtained NMR data, a structural calculation was performed in order to generate a model structure of the Hep-25-Ni(II) complex. The DEDEDE tag was excluded from the structural calculation due to a lack of NMR restraints. The dynamic nature and fast exchange of some of the amide protons with solvent reduced the overall number of NMR restraints needed for a high-quality structure. The NMR data revealed that the 20 Cterminal Hep-25 amino acids experienced no significant conformational changes, compared to published results, as a result of a pH change from pH 3 to pH 7 and metal binding. A 3D model of the Hep-25-Ni(II) complex was constructed from NMR data recorded for the hexapeptideNi(II) complex and Hep-25-DEDEDE-Ni(II) complex in combination with the fixed conformation of 19 C-terminal amino acids. The NMR data of the Hep-25-DEDEDE-Ni(II) complex indicates that the ATCUN motif moves independently from the rest of the structure. The 3D model structure of the metal-bound Hep-25 allows for future works to elucidate hepcidin’s interaction with its receptor ferroportin and should serve as a starting point for the development of antibodies with improved selectivity.
With the emergence of the Internet of things (IoT), plenty of battery-powered and energy-harvesting devices are being deployed to fulfill sensing and actuation tasks in a variety of application areas, such as smart homes, precision agriculture, smart cities, and industrial automation. In this context, a critical issue is that of denial-of-sleep attacks. Such attacks temporarily or permanently deprive battery-powered, energy-harvesting, or otherwise energy-constrained devices of entering energy-saving sleep modes, thereby draining their charge. At the very least, a successful denial-of-sleep attack causes a long outage of the victim device. Moreover, to put battery-powered devices back into operation, their batteries have to be replaced. This is tedious and may even be infeasible, e.g., if a battery-powered device is deployed at an inaccessible location. While the research community came up with numerous defenses against denial-of-sleep attacks, most present-day IoT protocols include no denial-of-sleep defenses at all, presumably due to a lack of awareness and unsolved integration problems. After all, despite there are many denial-of-sleep defenses, effective defenses against certain kinds of denial-of-sleep attacks are yet to be found.
The overall contribution of this dissertation is to propose a denial-of-sleep-resilient medium access control (MAC) layer for IoT devices that communicate over IEEE 802.15.4 links. Internally, our MAC layer comprises two main components. The first main component is a denial-of-sleep-resilient protocol for establishing session keys among neighboring IEEE 802.15.4 nodes. The established session keys serve the dual purpose of implementing (i) basic wireless security and (ii) complementary denial-of-sleep defenses that belong to the second main component. The second main component is a denial-of-sleep-resilient MAC protocol. Notably, this MAC protocol not only incorporates novel denial-of-sleep defenses, but also state-of-the-art mechanisms for achieving low energy consumption, high throughput, and high delivery ratios. Altogether, our MAC layer resists, or at least greatly mitigates, all denial-of-sleep attacks against it we are aware of. Furthermore, our MAC layer is self-contained and thus can act as a drop-in replacement for IEEE 802.15.4-compliant MAC layers. In fact, we implemented our MAC layer in the Contiki-NG operating system, where it seamlessly integrates into an existing protocol stack.
Additive Manufacturing (AM) in terms of laser powder-bed fusion (L-PBF) offers new prospects regarding the design of parts and enables therefore the production of lattice structures. These lattice structures shall be implemented in various industrial applications (e.g. gas turbines) for reasons of material savings or cooling channels. However, internal defects, residual stress, and structural deviations from the nominal geometry are unavoidable.
In this work, the structural integrity of lattice structures manufactured by means of L-PBF was non-destructively investigated on a multiscale approach.
A workflow for quantitative 3D powder analysis in terms of particle size, particle shape, particle porosity, inter-particle distance and packing density was established. Synchrotron computed tomography (CT) was used to correlate the packing density with the particle size and particle shape. It was also observed that at least about 50% of the powder porosity was released during production of the struts.
Struts are the component of lattice structures and were investigated by means of laboratory CT. The focus was on the influence of the build angle on part porosity and surface quality. The surface topography analysis was advanced by the quantitative characterisation of re-entrant surface features. This characterisation was compared with conventional surface parameters showing their complementary information, but also the need for AM specific surface parameters.
The mechanical behaviour of the lattice structure was investigated with in-situ CT under compression and successive digital volume correlation (DVC). The deformation was found to be knot-dominated, and therefore the lattice folds unit cell layer wise.
The residual stress was determined experimentally for the first time in such lattice structures. Neutron diffraction was used for the non-destructive 3D stress investigation. The principal stress directions and values were determined in dependence of the number of measured directions. While a significant uni-axial stress state was found in the strut, a more hydrostatic stress state was found in the knot. In both cases, strut and knot, seven directions were at least needed to find reliable principal stress directions.
Advancing charge selective contacts for efficient monolithic perovskite-silicon tandem solar cells
(2019)
Hybrid organic-inorganic perovskites are one of the most promising material classes for photovoltaic energy conversion. In solar cells, the perovskite absorber is sandwiched between n- and p-type contact layers which selectively transport electrons and holes to the cell’s cathode and anode, respectively. This thesis aims to advance contact layers in perovskite solar cells and unravel the impact of interface and contact properties on the device performance. Further, the contact materials are applied in monolithic perovskite-silicon heterojunction (SHJ) tandem solar cells, which can overcome the single junction efficiency limits and attract increasing attention. Therefore, all contact layers must be highly transparent to foster light harvesting in the tandem solar cell design. Besides, the SHJ device restricts processing temperatures for the selective contacts to below 200°C.
A comparative study of various electron selective contact materials, all processed below 180°C, in n-i-p type perovskite solar cells highlights that selective contacts and their interfaces to the absorber govern the overall device performance. Combining fullerenes and metal-oxides in a TiO2/PC60BM (phenyl-C60-butyric acid methyl ester) double-layer contact allows to merge good charge extraction with minimized interface recombination. The layer sequence thereby achieved high stabilized solar cell performances up to 18.0% and negligible current-voltage hysteresis, an otherwise pronounced phenomenon in this device design. Double-layer structures are therefore emphasized as a general concept to establish efficient and highly selective contacts.
Based on this success, the concept to combine desired properties of different materials is transferred to the p-type contact. Here, a mixture of the small molecule Spiro-OMeTAD [2,2’,7,7’-tetrakis(N,N-di-p-methoxyphenylamine)-9,9’-spirobifluoren] and the doped polymer PEDOT [poly(3,4-ethylenedioxythiophene)] is presented as a novel hole selective contact. PEDOT thereby remarkably suppresses charge recombination at the perovskite surface, allowing an increase of quasi-Fermi level splitting in the absorber. Further, the addition of Spiro-OMeTAD into the PEDOT layer is shown to enhance charge extraction at the interface and allow high efficiencies up to 16.8%.
Finally, the knowledge on contact properties is applied to monolithic perovskite-SHJ tandem solar cells. The main goal is to optimize the top contact stack of doped Spiro-OMeTAD/molybdenum oxide(MoOx)/ITO towards higher transparency by two different routes. First, fine-tuning of the ITO deposition to mitigate chemical reduction of MoOx and increase the transmittance of MoOx/ITO stacks by 25%. Second, replacing Spiro-OMeTAD with the alternative hole transport materials PEDOT/Spiro-OMeTAD mixtures, CuSCN or PTAA [poly(triaryl amine)]. Experimental results determine layer thickness constrains and validate optical simulations, which subsequently allow to realistically estimate the respective tandem device performances. As a result, PTAA represents the most promising replacement for Spiro-OMeTAD, with a projected increase of the optimum tandem device efficiency for the herein used architecture by 2.9% relative to 26.5% absolute. The results also reveal general guidelines for further performance gains of the technology.
Due to advances in science and technology towards smaller and more powerful processing units, the fabrication of micrometer sized machines for different tasks becomes more and more possible. Such micro-robots could revolutionize medical treatment of diseases and shall support to work on other small machines. Nevertheless, scaling down robots and other devices is a challenging task and will probably remain limited in near future. Over the past decade the concept of bio-hybrid systems has proved to be a promising approach in order to advance the further development of micro-robots. Bio-hybrid systems combine biological cells with artificial components, thereby benefiting from the functionality of living biological cells. Cell-driven micro-transport is one of the most prominent applications in the emerging field of these systems. So far, micrometer sized cargo has been successfully transported by means of swimming bacterial cells. The potential of motile adherent cells as transport systems has largely remained unexplored.
This thesis concentrates on the social amoeba Dictyostelium discoideum as a potential candidate for an amoeboid bio-hybrid transport system. The use of this model organism comes with several advantages. Due to the unspecific properties of Dictyostelium adhesion, a wide range of different cargo materials can be used for transport. As amoeboid cells exceed bacterial cells in size by one order of magnitude, also the size of an object carried by a single cell can also be much larger for an amoeba. Finally it is possible to guide the cell-driven transport based on the chemotactic behavior of the amoeba. Since cells undergo a developmentally induced chemotactic aggregation, cargo could be assembled in a self-organized manner into a cluster. It is also possible to impose an external chemical gradient to guide the amoeboid transport system to a desired location.
To establish Dictyostelium discoideum as a possible candidate for bio-hybrid transport systems, this thesis will first investigate the movement of single cells. Secondly, the interaction of cargo and cells will be studied. Eventually, a conceptional proof will be conducted, that the cheomtactic behavior can be exploited either to transport a cargo self-organized or through an external chemical source.
Analysis of supramolecular assemblies of NE81, the first lamin protein in a non-metazoan organism
(2019)
Nuclear lamins are nucleus-specific intermediate filaments forming a network located at the inner nuclear membrane of the nuclear envelope. They form the nuclear lamina together with proteins of the inner nuclear membrane regulating nuclear shape and gene expression, among others. The amoebozoan Dictyostelium NE81 protein is a suitable candidate for an evolutionary conserved lamin protein in this non-metazoan organism. It shares the domain organization of metazoan lamins and is fulfilling major lamin functions in Dictyostelium. Moreover, field-emission scanning electron microscopy (feSEM) images of NE81 expressed on Xenopus oocytes nuclei revealed filamentous structures with an overall appearance highly reminiscent to that of metazoan Xenopus lamin B2. For the classification as a lamin-like or a bona fide lamin protein, a better understanding of the supramolecular NE81 structure was necessary. Yet, NE81 carrying a large N-terminal GFP-tag turned out as unsuitable source for protein isolation and characterization; GFP-NE81 expressed in Dictyostelium NE81 knock-out cells exhibited an abnormal distribution, which is an indicator for an inaccurate assembly of GFP-tagged NE81. Hence, a shorter 8×HisMyc construct was the tag of choice to investi-gate formation and structure of NE81 assemblies. One strategy was the structural analysis of NE81 in situ at the outer nuclear membrane in Dictyostelium cells; NE81 without a func-tional nuclear localization signal (NLS) forms assemblies at the outer face of the nucleus. Ultrastructural feSEM pictures of NE81ΔNLS nuclei showed a few filaments of the expected size but no repetitive filamentous structures. The former strategy should also be established for metazoan lamins in order to facilitate their structural analysis. However, heterologously expressed Xenopus and C. elegans lamins showed no uniform localization at the outer nucle-ar envelope of Dictyostelium and hence, no further ultrastructural analysis was undertaken. For in vitro assembly experiments a Dictyostelium mutant was generated, expressing NE81 without the NLS and the membrane-anchoring isoprenylation site (HisMyc-NE81ΔNLSΔCLIM). The cytosolic NE81 clusters were soluble at high ionic strength and were purified from Dictyostelium extracts using Ni-NTA Agarose. Widefield immunofluorescence microscopy, super-resolution light microscopy and electron microscopy images of purified NE81 showed its capability to form filamentous structures at low ionic strength, as described previously for metazoan lamins. Introduction of a phosphomimetic point mutation (S122E) into the CDK1-consensus sequence of NE81 led to disassembled NE81 protein in vivo, which could be reversibly stimulated to form supramolecular assemblies by blue light exposure.
The results of this work reveal that NE81 has to be considered a bona fide lamin, since it is able to form filamentous assemblies. Furthermore, they highlight Dictyostelium as a non-mammalian model organism with a well-characterized nuclear envelope containing all rele-vant protein components known in animal cells.
The advances in modern geodetic techniques such as the global navigation satellite system (GNSS) and synthetic aperture radar (SAR) provide surface deformation measurements with an unprecedented accuracy and temporal and spatial resolutions even at most remote volcanoes on Earth. Modelling of the high-quality geodetic data is crucial for understanding the underlying physics of volcano deformation processes. Among various approaches, mathematical models are the most effective for establishing a quantitative link between the surface displacements and the shape and strength of deformation sources. Advancing the geodetic data analyses and hence, the knowledge on the Earth’s interior processes, demands sophisticated and efficient deformation modelling approaches. Yet the majority of these models rely on simplistic assumptions for deformation source geometries and ignore complexities such as the Earth’s surface topography and interactions between multiple sources.
This thesis addresses this problem in the context of analytical and numerical volcano deformation modelling. In the first part, new analytical solutions for triangular dislocations (TDs) in uniform infinite and semi-infinite elastic media have been developed. Through a comprehensive investigation, the locations and causes of artefact singularities and numerical instabilities associated with TDs have been determined and these long-standing drawbacks have been addressed thoroughly. This approach has then been extended to rectangular dislocations (RDs) with full rotational degrees of freedom. Using this solution in a configuration of three orthogonal RDs a compound dislocation model (CDM) has been developed. The CDM can represent generalized volumetric and planar deformation sources efficiently. Thus, the CDM is relevant for rapid inversions in early warning systems and can also be used for detailed deformation analyses. In order to account for complex source geometries and realistic topography in the deformation models, in this thesis the boundary element method (BEM) has been applied to the new solutions for TDs. In this scheme, complex surfaces are simulated as a continuous mesh of TDs that may possess any displacement or stress boundary conditions in the BEM calculations. In the second part of this thesis, the developed modelling techniques have been applied to five different real-world deformation scenarios. As the first and second case studies the deformation sources associated with the 2015 Calbuco eruption and 2013–2016 Copahue inflation period have been constrained by using the CDM. The highly anisotropic source geometries in these two cases highlight the importance of using generalized deformation models such as the CDM, for geodetic data inversions. The other three case studies in this thesis involve high-resolution dislocation models and BEM calculations. As the third case, the 2013 pre-explosive inflation of Volcán de Colima has been simulated by using two ellipsoidal cavities, which locate zones of pressurization in the volcano’s lava dome. The fourth case study, which serves as an example for volcanotectonics interactions, the 3-D kinematics of an active ring-fault at Tendürek volcano has been investigated through modelling displacement time series over the 2003–2010 time period. As the fifth example, the deformation sources associated with North Korea’s underground nuclear test in September 2017 have been constrained. These examples demonstrate the advancement and increasing level of complexity and the general applicability of the developed dislocation modelling techniques.
This thesis establishes a unified framework for rapid and high-resolution dislocation modelling, which in addition to volcano deformations can also be applied to tectonic and humanmade deformations.
On a planetary scale human populations need to adapt to both socio-economic and environmental problems amidst rapid global change. This holds true for coupled human-environment (socio-ecological) systems in rural and urban settings alike. Two examples are drylands and urban coasts. Such socio-ecological systems have a global distribution. Therefore, advancing the knowledge base for identifying socio-ecological adaptation needs with local vulnerability assessments alone is infeasible: The systems cover vast areas, while funding, time, and human resources for local assessments are limited. They are lacking in low an middle-income countries (LICs and MICs) in particular.
But places in a specific socio-ecological system are not only unique and complex – they also exhibit similarities. A global patchwork of local rural drylands vulnerability assessments of human populations to socio-ecological and environmental problems has already been reduced to a limited number of problem structures, which typically cause vulnerability. However, the question arises whether this is also possible in urban socio-ecological systems. The question also arises whether these typologies provide added value in research beyond global change. Finally, the methodology employed for drylands needs refining and standardizing to increase its uptake in the scientific community. In this dissertation, I set out to fill these three gaps in research.
The geographical focus in my dissertation is on LICs and MICs, which generally have lower capacities to adapt, and greater adaptation needs, regarding rapid global change. Using a spatially explicit indicator-based methodology, I combine geospatial and clustering methods to identify typical configurations of key factors in case studies causing vulnerability to human populations in two specific socio-ecological systems. Then I use statistical and analytical methods to interpret and appraise both the typical configurations and the global typologies they constitute.
First, I improve the indicator-based methodology and then reanalyze typical global problem structures of socio-ecological drylands vulnerability with seven indicator datasets. The reanalysis confirms the key tenets and produces a more realistic and nuanced typology of eight spatially explicit problem structures, or vulnerability profiles: Two new profiles with typically high natural resource endowment emerge, in which overpopulation has led to medium or high soil erosion. Second, I determine whether the new drylands typology and its socio-ecological vulnerability concept advance a thematically linked scientific debate in human security studies: what drives violent conflict in drylands? The typology is a much better predictor for conflict distribution and incidence in drylands than regression models typically used in peace research. Third, I analyze global problem structures typically causing vulnerability in an urban socio-ecological system - the rapidly urbanizing coastal fringe (RUCF) – with eleven indicator datasets. The RUCF also shows a robust typology, and its seven profiles show huge asymmetries in vulnerability and adaptive capacity. The fastest population increase, lowest income, most ineffective governments, most prevalent poverty, and lowest adaptive capacity are all typically stacked in two profiles in LICs. This shows that beyond local case studies tropical cyclones and/or coastal flooding are neither stalling rapid population growth, nor urban expansion, in the RUCF. I propose entry points for scaling up successful vulnerability reduction strategies in coastal cities within the same vulnerability profile.
This dissertation shows that patchworks of local vulnerability assessments can be generalized to structure global socio-ecological vulnerabilities in both rural and urban socio-ecological systems according to typical problems. In terms of climate-related extreme events in the RUCF, conflicting problem structures and means to deal with them are threatening to widen the development gap between LICs and high-income countries unless successful vulnerability reduction measures are comprehensively scaled up. The explanatory power for human security in drylands warrants further applications of the methodology beyond global environmental change research in the future. Thus, analyzing spatially explicit global typologies of socio-ecological vulnerability is a useful complement to local assessments: The typologies provide entry points for where to consider which generic measures to reduce typical problem structures – including the countless places without local assessments. This can save limited time and financial resources for adaptation under rapid global change.
Der Porenraum eines Karbonatgesteins ist zumeist aus einer spezifischen Vergesellschaftung verschiedenster Porentypen aufgebaut, die eine unterschiedliche Herkunft aufweisen und zusätzlich in ihrer Form und Größe stark variieren können (e.g., Melim et al., 2001; Lee et al., 2009; He et al., 2014; Dernaika & Sinclair, 2017; Zhang et al., 2017). Diese für Karbonate typischen multimodalen Porensysteme entstehen sowohl durch primäre Ablagerungsprozesse, als auch durch mehrmalige Modifikation des Porenraumes nach Ablagerung des Sediments. Dies führt zu einer ungleichen Verteilung der Porenraumeigenschaften auf engstem Raum und das zeitgleiche Auftreten von effektiven und ineffektiven Poren. Diese immanenten Unterschiede in der Effektivität einzelner Porentypen sind der Hauptgrund für die häufig sehr niedrige Korellation zwischen Porosität und Permeabilität in Karbonaten (e.g., Mazzullo 2004; Ehrenberg & Nadeau, 2005; Hollis et al., 2010; He et al., 2014; Rashid et al., 2015; Dernaika & Sinclair, 2017). Durch die Extraktion von miteinander verbundenen und somit effektiven Porentypen jedoch kann das Verständnis und die Vorhersage der Permeabilität für einen gegeben Porositätswert stark verbessert werden (e.g., Melim et al., 2001; Zhang et al., 2017). Dazu wird in dieser Arbeit eine auf der digitalen Bildanalyse (DIA) beruhende Methode vorgestellt, mit der schrittweise die Effektivität von Poren aus den analysierten mittelmiozänen lakustrinen Karbonaten des Nördlinger Ries Kratersees (Süddeutschland) berechnet werden kann. Mithilfe des Porenformfaktors (sensu Anselmetti et al., 1998), der als Parameter zur Quantifizierung der Interkonnektivität zwischen Poren dient, wird der potentiellen Beitrag an Permeabilität jedes Porentyps zur Gesamtpermeabilität bestimmt. Somit können die effektivsten Porentypen innerhalb der analysierten Karbonate identifiziert werden. Desweiteren wird die digitale Bildanalyse dazu benutzt, zementierte Porenräume zu extrahieren, um den Einfluss der Zementation auf die Porenraumeigenschaften zu quantifizieren. Durch eine unabhängige Methode (Fluid-Flow-Simulation), deren Ergebnisse wiederum mit der digitalen Bildanalyse ausgewertet werden, können die vorherigen Erkentnisse bestätigt werden: Interpeloidale Poren und Lösungsporen sind die beiden effektivsten Porentypen im Porenraum der Riesseekarbonate. Die Extraktion des miteinander verbundenen (d.h. effektiven) Porennetzwerkes führt schließlich zu einer erheblich verbesserten Korrelation zwischen Porosität und Permeabilität in den analysierten Karbonaten. Die in dieser Arbeit beschriebene Methode bietet ein quantitatives petrographisches Werkzeug, mit dessen Hilfe die effektive Porosität eines Porenraumes extrahiert werden kann. Dies führt zu einem besseren Verständnis darüber, wie Porensysteme von Karbonaten Permeabilität erzeugen. Diese Dissertation zeigt auch, dass die Formkomplexität von Poren einer der wichtigsten Parameter ist, der die Interkonnektivität zwischen einzelnen Poren und somit die Entstehung von effektiver Porosität steuert. Außerdem erweist sich die digitale Bildanalyse als ausgezeichnetes Werkzeug um die Porosität und Permeabilität direkt an ihren gemeinsamen Ursprung zu knüpfen: die Gesteinstextur und die damit assoziierte Porenstruktur.
The main goal of this thesis is to explore the feasibility of using cross-lingual annotation projection as a method of alleviating the task of manual coreference annotation.
To reach our goal, we build a first trilingual parallel coreference corpus that encompasses multiple genres. For the annotation of the corpus, we develop common coreference annotation guidelines that are applicable to three languages (English, German, Russian) and include a novel domain-independent typology of bridging relations as well as state-of-the-art near-identity categories.
Thereafter, we design and perform several annotation projection experiments. In the first experiment, we implement a direct projection method with only one source language. Our results indicate that, already in a knowledge-lean scenario, our projection approach is superior to the most closely related work of Postolache et al. (2006). Since the quality of the resulting annotations is to a high degree dependent on the word alignment, we demonstrate how using limited syntactic information helps to further improve mention extraction on the target side. As a next step, in our second experiment, we show how exploiting two source languages helps to improve the quality of target annotations for both language pairs by concatenating annotations projected from two source languages. Finally, we assess the projection quality in a fully automatic scenario (using automatically produced source annotations), and propose a pilot experiment on manual projection of bridging pairs.
For each of the experiments, we carry out an in-depth error analysis, and we conclude that noisy word alignments, translation divergences and morphological and syntactic differences between languages are responsible for projection errors. We systematically compare and evaluate our projection methods, and we investigate the errors both qualitatively and quantitatively in order to identify problematic cases. Finally, we discuss the applicability of our method to coreference annotations and propose several avenues of future research.
Risiken für Cyberressourcen können durch unbeabsichtigte oder absichtliche Bedrohungen entstehen. Dazu gehören Insider-Bedrohungen von unzufriedenen oder nachlässigen Mitarbeitern und Partnern, eskalierende und aufkommende Bedrohungen aus aller Welt, die stetige Weiterentwicklung der Angriffstechnologien und die Entstehung neuer und zerstörerischer Angriffe. Informationstechnik spielt mittlerweile in allen Bereichen des Lebens eine entscheidende Rolle, u. a. auch im Bereich des Militärs. Ein ineffektiver Schutz von Cyberressourcen kann hier Sicherheitsvorfälle und Cyberattacken erleichtern, welche die kritischen Vorgänge stören, zu unangemessenem Zugriff, Offenlegung, Änderung oder Zerstörung sensibler Informationen führen und somit die nationale Sicherheit, das wirtschaftliche Wohlergehen sowie die öffentliche Gesundheit und Sicherheit gefährden. Oftmals ist allerdings nicht klar, welche Bedrohungen konkret vorhanden sind und welche der kritischen Systemressourcen besonders gefährdet ist.
In dieser Dissertation werden verschiedene Analyseverfahren für Bedrohungen in militärischer Informationstechnik vorgeschlagen und in realen Umgebungen getestet. Dies bezieht sich auf Infrastrukturen, IT-Systeme, Netze und Anwendungen, welche Verschlusssachen (VS)/Staatsgeheimnisse verarbeiten, wie zum Beispiel bei militärischen oder Regierungsorganisationen. Die Besonderheit an diesen Organisationen ist das Konzept der Informationsräume, in denen verschiedene Datenelemente, wie z. B. Papierdokumente und Computerdateien, entsprechend ihrer Sicherheitsempfindlichkeit eingestuft werden, z. B. „STRENG GEHEIM“, „GEHEIM“, „VS-VERTRAULICH“, „VS-NUR-FÜR-DEN-DIENSTGEBRAUCH“ oder „OFFEN“.
Die Besonderheit dieser Arbeit ist der Zugang zu eingestuften Informationen aus verschiedenen Informationsräumen und der Prozess der Freigabe dieser. Jede in der Arbeit entstandene Veröffentlichung wurde mit Angehörigen in der Organisation besprochen, gegengelesen und freigegeben, so dass keine eingestuften Informationen an die Öffentlichkeit gelangen.
Die Dissertation beschreibt zunächst Bedrohungsklassifikationsschemen und Angreiferstrategien, um daraus ein ganzheitliches, strategiebasiertes Bedrohungsmodell für Organisationen abzuleiten. Im weiteren Verlauf wird die Erstellung und Analyse eines Sicherheitsdatenflussdiagramms definiert, welches genutzt wird, um in eingestuften Informationsräumen operationelle Netzknoten zu identifizieren, die aufgrund der Bedrohungen besonders gefährdet sind. Die spezielle, neuartige Darstellung ermöglicht es, erlaubte und verbotene Informationsflüsse innerhalb und zwischen diesen Informationsräumen zu verstehen.
Aufbauend auf der Bedrohungsanalyse werden im weiteren Verlauf die Nachrichtenflüsse der operationellen Netzknoten auf Verstöße gegen Sicherheitsrichtlinien analysiert und die Ergebnisse mit Hilfe des Sicherheitsdatenflussdiagramms anonymisiert dargestellt. Durch Anonymisierung der Sicherheitsdatenflussdiagramme ist ein Austausch mit externen Experten zur Diskussion von Sicherheitsproblematiken möglich.
Der dritte Teil der Arbeit zeigt, wie umfangreiche Protokolldaten der Nachrichtenflüsse dahingehend untersucht werden können, ob eine Reduzierung der Menge an Daten möglich ist. Dazu wird die Theorie der groben Mengen aus der Unsicherheitstheorie genutzt. Dieser Ansatz wird in einer Fallstudie, auch unter Berücksichtigung von möglichen auftretenden Anomalien getestet und ermittelt, welche Attribute in Protokolldaten am ehesten redundant sind.
Bildungsort Familie
(2019)
In der Bildungs- und Familienforschung wird die intergenerationale Weitergabe von Bildung innerhalb der Familie hauptsächlich unter dem Blickwinkel des schulischen Erfolges der nachwachsenden Generation thematisiert. „Wie“ aber bildungsbezogene Transferprozesse innerhalb der Familie konkret ablaufen, bleibt jedoch in der deutschen Forschungslandschaft weitestgehend unbearbeitet. An dieser Stelle setzt diese qualitativ angelegte Arbeit an. Ziel dieser Arbeit ist, bildungsbezogene Transferprozesse innerhalb von russischen Dreigenerationenfamilien, die aus der ehemaligen Sowjetunion nach Berlin seit 1989 ausgewandert sind und zwischen der Großeltern-, Elterngeneration und der Enkelgeneration ablaufen, zu untersuchen. Hinter diesen Transferprozessen verbergen sich im Sinne Bourdieus bewusste und unbewusste Bildungsstrategien der interviewten Familienmitglieder. Im Rahmen dieser Arbeit wurden zwei Spätaussiedlerfamilien – zu diesen zählen Familie Hoffmann und Familie Popow, sowie zwei russisch-jüdische Familien – zu diesen zählen Familie Rosenthal und Familie Buchbinder, interviewt. Es wurden mit den einzelnen Mitgliedern der vier untersuchten Dreigenerationenfamilien Gruppendiskussionen sowie mit je einem Vertreter einer Generation leitfadengestützte Einzelinterviews geführt. Die Erhebungsphase fand in Berlin im Zeitraum von 2010 bis 2012 statt. Das auf diese Weise gewonnene empirische Material wurde mithilfe der dokumentarischen Methode nach Bohnsack ausgewertet. Hierdurch wurde es möglich die implizite Selbstverständlichkeit, mit der sich Bildung in Familien nach Bourdieu habituell vollzieht, einzufangen und rekonstruierbar zu machen. In der Arbeit wurden eine habitustheoretische Interpretation der russischen Dreigenerationenfamilien und die entsprechende Feldanalyse nach Bourdieu vorgenommen. In diesem Zusammenhang wurde der soziale Raum der untersuchten Familien in der Ankunftsgesellschaft bezüglich ihres Vergleichshorizontes der Herkunftsgesellschaft rekonstruiert. Weiter wurde der Bildungstransfer vor dem jeweiligen Erlebnishintergrund der einzelnen Familien untersucht und diesbezüglich eine Typisierung vorgenommen.
Im Rahmen dieser Untersuchung konnten neue Erkenntnisse zum bisher unerforschten Feld des Bildungstransfers russischer Dreigenerationenfamilien in Berlin gewonnen werden. Ein wesentliches Ergebnis dieser Arbeit ist, dass die Anwendung von Bourdieus Klassentheorie auch auf Gruppen, die in einer sozialistischen Gesellschaft sozialisiert wurden und in eine kapitalistisch orientierte Gesellschaft ausgewandert sind, produktiv sein kann. Ein weiteres zentrales Ergebnis der Studie ist, dass bei zwei der vier untersuchten Familien die Migration den intergenerationalen Bildungstransfer beeinflusste. In diesem Zusammenhang weist Familie Rosenthal durch die Migration einen „gespaltenen“ Habitus auf. Dieser ist darauf zurückzuführen, dass diese Familie bei der Planung des Berufes für die Enkelin in Berlin sich am Praktischen und Notwendigen orientierte. Während die bewusste Bildungsstrategie der Großeltern- und Elterngeneration für die Enkelgeneration im Ankunftsland dem Habitus der Notwendigkeit, den Bourdieu der Arbeiterklasse zuschreibt, zugeordnet werden kann, lässt sich hingegen das Freizeitverhalten der Familie Rosenthal dem Habitus der Distinktion zuordnen, der typisch für die herrschende Klasse ist. Ein weiterer Befund dieser Untersuchung ist, dass im Vergleich zur Enkelin Rosenthal bei der Enkelin Popow eine sogenannte Sphärendiskrepanz rekonstruiert wurde. So ist die Enkelin Popow in der äußeren Sphäre der Schule auf sich gestellt, da die Großeltern- und Elterngeneration zum deutschen Schulsystem nur über einen geringen Informationsstand verfügen. Die Enkelin grenzt sich einerseits von ihrer Familie (innere Sphäre) und deutschen Schulabbrechern (äußere Sphäre) ab, orientiert sich aber andererseits beim Versuch sozial aufzusteigen an russischsprachigen Peers, die die gymnasiale Oberstufe besuchen (dritte Sphäre). Bei Enkelin Popow fungiert demzufolge die Peergruppe und nicht die Familie als zentraler Bildungsort. An dieser Stelle sei angemerkt, dass sowohl bei einer russisch-jüdischen Familie als auch bei einer Spätaussiedlerfamilie der intergenerationale Bildungstransfer durch die Migration beeinflusst wurde. Während Familie Rosenthal in der Herkunftsgesellschaft der Intelligenzija zuzuordnen ist, gehört Familie Popow der Arbeiterschaft an. Daraus folgt, dass der intergenerationale Bildungstransfer der untersuchten Familien sowohl unabhängig vom Spätaussiedler- und Kontingentflüchtlingsstatus als auch vom herkunftsortspezifischen sozialen Status abläuft. Demnach kann geschlussfolgert werden, dass im Rahmen dieser Studie die Migration ein zentraler Faktor für den intergenerationalen Bildungstransfer ist.
C-Arylglykoside und Chalkone
(2019)
Im bis heute andauernden Zeitalter der wissenschaftlichen Medizin, konnte ein breites Spektrum von Wirkstoffen zur Behandlung diverser Krankheiten zusammengetragen werden. Dennoch hat es sich die organische Synthesechemie zur Aufgabe gemacht, dieses Spektrum auf neuen oder bekannten Wegen und aus verschiedenen Gründen zu erweitern. Zum einen ist das Vorkommen bestimmter Verbindungen in der Natur häufig limitiert, sodass synthetische Methoden immer öfter an Stelle eines weniger nachhaltigen Abbaus treten. Zum anderen kann durch Derivatisierung und Wirkstoffanpassung die physiologische Wirkung oder die Bioverfügbarkeit eines Wirkstoffes erhöht werden. In dieser Arbeit konnten einige Vertreter der bekannten Wirkstoffklassen C-Arylglykoside und Chalkone durch den Schlüsselschritt der Palladium-katalysierten MATSUDA-HECK-Reaktion synthetisiert werden.
Dazu wurden im Fall der C-Arylglykoside zunächst ungesättigte Kohlenhydrate (Glykale) über eine Ruthenium-katalysierte Zyklisierungsreaktion dargestellt. Diese wurden im Anschluss mit unterschiedlich substituierten Diazoniumsalzen in der oben erwähnten Palladium-katalysierten Kupplungsreaktion zur Reaktion gebracht. Bei der Auswertung der analytischen Daten konnte festgestellt werden, dass stets die trans-Diastereomere gebildet wurden. Im Anschluss konnte gezeigt werden, dass die Doppelbindungen dieser Verbindungen durch Hydrierung, Dihydroxylierung oder Epoxidierung funktionalisiert werden können. Auf diesem Wege konnte u. a. eine dem Diabetesmedikament Dapagliflozin ähnliche Verbindung hergestellt werden.
Im zweiten Teil der Arbeit wurden Arylallylchromanone durch die MATSUDA-HECK-Reaktion von verschiedenen 8-Allylchromanonen mit Diazoniumsalzen dargestellt. Dabei konnte beobachtet werden, dass eine MOM-Schutzgruppe in 7-Position der Moleküle die Darstellung von Produktgemischen unterdrückt und jeweils nur eine der möglichen Verbindungen gebildet wird. Die Lage der Doppelbindung konnte mittels 2D-NMR-Untersuchungen lokalisiert werden. In Kooperation mit der theoretischen Chemie sollte durch Berechnungen untersucht werden, wie die beobachteten Verbindungen entstehen. Durch eine auftretende Wechselwirkung innerhalb des Moleküls konnte allerdings keine explizite Aussage getroffen werden.
Im Anschluss sollten die erhaltenen Verbindungen in einer allylischen Oxidation zu Chalkonen umgesetzt werden. Die Ruthenium-katalysierten Methoden zeigten u. a. keine Eignung. Es konnte allerdings eine metallfreie, Mikrowellen-unterstützte Methode erfolgreich erprobt werden, sodass die Darstellung einiger Vertreter dieser physiologisch aktiven Stoffklasse gelang.
Cellulose derived polymers
(2019)
Plastics, such as polyethylene, polypropylene, and polyethylene terephthalate are part of our everyday lives in the form of packaging, household goods, electrical insulation, etc. These polymers are non-degradable and create many environmental problems and public health concerns. Additionally, these polymers are produced from finite fossils resources. With the continuous utilization of these limited resources, it is important to look towards renewable sources along with biodegradation of the produced polymers, ideally. Although many bio-based polymers are known, such as polylactic acid, polybutylene succinate adipate or polybutylene succinate, none have yet shown the promise of replacing conventional polymers like polyethylene, polypropylene and polyethylene terephthalate. Cellulose is one of the most abundant renewable resources produced in nature. It can be transformed into various small molecules, such as sugars, furans, and levoglucosenone. The aim of this research is to use the cellulose derived molecules for the synthesis of polymers.
Acid-treated cellulose was subjected to thermal pyrolysis to obtain levoglucosenone, which was reduced to levoglucosenol. Levoglucosenol was polymerized, for the first time, by ring-opening metathesis polymerization (ROMP) yielding high molar mass polymers of up to ~150 kg/mol. The poly(levoglucosenol) is thermally stable up to ~220 ℃, amorphous, and is exhibiting a relatively high glass transition temperature of ~100 ℃. The poly(levoglucosenol) can be converted to a transparent film, resembling common plastic, and was found to degrade in a moist acidic environment. This means that poly(levoglucosenol) may find its use as an alternative to conventional plastic, for instance, polystyrene.
Levoglucosenol was also converted into levoglucosenyl methyl ether, which was polymerized by cationic ring-opening metathesis polymerization (CROP). Polymers were obtained with molar masses up to ~36 kg/mol. These polymers are thermally stable up to ~220 ℃ and are semi-crystalline thermoplastics, having a glass transition temperature of ~35 ℃ and melting transition of 70-100 ℃. Additionally, the polymers underwent cross-linking, hydrogenation and thiol-ene click chemistry.
Floods are among the most costly natural hazards that affect Europe and Germany, demanding a continuous adaptation of flood risk management. While social and economic development in recent years altered the flood risk patterns mainly with regard to an increase in flood exposure, different flood events are further expected to increase in frequency and severity in certain European regions due to climate change. As a result of recent major flood events in Germany, the German flood risk management shifted to more integrated approaches that include private precaution and preparation to reduce the damage on exposed assets. Yet, detailed insights into the preparedness decisions of flood-prone households remain scarce, especially in connection to mental impacts and individual coping strategies after being affected by different flood types.
This thesis aims to gain insights into flash floods as a costly hazard in certain German regions and compares the damage driving factors to the damage driving factors of river floods. Furthermore, psychological impacts as well as the effects on coping and mitigation behaviour of flood-affected households are assessed. In this context, psychological models such as the Protection Motivation Theory (PMT) and methods such as regressions and Bayesian statistics are used to evaluate influencing factors on the mental coping after an event and to identify psychological variables that are connected to intended private flood mitigation. The database consists of surveys that were conducted among affected households after major river floods in 2013 and flash floods in 2016.
The main conclusions that can be drawn from this thesis reveal that the damage patterns and damage driving factors of strong flash floods differ significantly from those of river floods due to a rapid flow origination process, higher flow velocities and flow forces. However, the effects on mental coping of people that have been affected by flood events appear to be weakly influenced by different flood types, but yet show a coherence to the event severity, where often thinking of the respective event is pronounced and also connected to a higher mitigation motivation. The mental coping and preparation after floods is further influenced by a good information provision and a social environment, which encourages a positive attitude towards private mitigation.
As an overall recommendation, approaches for an integrated flood risk management in Germany should be followed that also take flash floods into account and consider psychological characteristics of affected households to support and promote private flood mitigation. Targeted information campaigns that concern coping options and discuss current flood risks are important to better prepare for future flood hazards in Germany.
The central motivation of the thesis was to provide possible solutions and concepts to improve the performance (e.g. activity and selectivity) of electrochemical N2 reduction reaction (NRR). Given that porous carbon-based materials usually exhibit a broad range of structural properties, they could be promising NRR catalysts. Therefore, the advanced design of novel porous carbon-based materials and the investigation of their application in electrocatalytic NRR including the particular reaction mechanisms are the most crucial points to be addressed. In this regard, three main topics were investigated. All of them are related to the functionalization of porous carbon for electrochemical NRR or other electrocatalytic reactions.
In chapter 3, a novel C-TixOy/C nanocomposite has been described that has been obtained via simple pyrolysis of MIL-125(Ti). A novel mode for N2 activation is achieved by doping carbon atoms from nearby porous carbon into the anion lattice of TixOy. By comparing the NRR performance of M-Ts and by carrying out DFT calculations, it is found that the existence of (O-)Ti-C bonds in C-doped TixOy can largely improve the ability to activate and reduce N2 as compared to unoccupied OVs in TiO2. The strategy of rationally doping heteroatoms into the anion lattice of transition metal oxides to create active centers may open many new opportunities beyond the use of noble metal-based catalysts also for other reactions that require the activation of small molecules as well.
In chapter 4, a novel catalyst construction composed of Au single atoms decorated on the surface of NDPCs was reported. The introduction of Au single atoms leads to active reaction sites, which are stabilized by the N species present in NDPCs. Thus, the interaction within as-prepared AuSAs-NDPCs catalysts enabled promising performance for electrochemical NRR. For the reaction mechanism, Au single sites and N or C species can act as Frustrated Lewis pairs (FLPs) to enhance the electron donation and back-donation process to activate N2 molecules. This work provides new opportunities for catalyst design in order to achieve efficient N2 fixation at ambient conditions by utilizing recycled electric energy.
The last topic described in chapter 5 mainly focused on the synthesis of dual heteroatom-doped porous carbon from simple precursors. The introduction of N and B heteroatoms leads to the construction of N-B motives and Frustrated Lewis pairs in a microporous architecture which is also rich in point defects. This can improve the strength of adsorption of different reactants (N2 and HMF) and thus their activation. As a result, BNC-2 exhibits a desirable electrochemical NRR and HMF oxidation performance. Gas adsorption experiments have been used as a simple tool to elucidate the relationship between the structure and catalytic activity. This work provides novel and deep insights into the rational design and the origin of activity in metal-free electrocatalysts and enables a physically viable discussion of the active motives, as well as the search for their further applications.
Throughout this thesis, the ubiquitous problems of low selectivity and activity of electrochemical NRR are tackled by designing porous carbon-based catalysts with high efficiency and exploring their catalytic mechanisms. The structure-performance relationships and mechanisms of activation of the relatively inert N2 molecules are revealed by either experimental results or DFT calculations. These fundamental understandings pave way for a future optimal design and targeted promotion of NRR catalysts with porous carbon-based structure, as well as study of new N2 activation modes.
The natural abundance of Coiled Coil (CC) motifs in cytoskeleton and extracellular matrix proteins suggests that CCs play an important role as passive (structural) and active (regulatory) mechanical building blocks. CCs are self-assembled superhelical structures consisting of 2-7 α-helices. Self-assembly is driven by hydrophobic and ionic interactions, while the helix propensity of the individual helices contributes additional stability to the structure. As a direct result of this simple sequence-structure relationship, CCs serve as templates for protein design and sequences with a pre-defined thermodynamic stability have been synthesized de novo. Despite this quickly increasing knowledge and the vast number of possible CC applications, the mechanical function of CCs has been largely overlooked and little is known about how different CC design parameters determine the mechanical stability of CCs. Once available, this knowledge will open up new applications for CCs as nanomechanical building blocks, e.g. in biomaterials and nanobiotechnology.
With the goal of shedding light on the sequence-structure-mechanics relationship of CCs, a well-characterized heterodimeric CC was utilized as a model system. The sequence of this model system was systematically modified to investigate how different design parameters affect the CC response when the force is applied to opposing termini in a shear geometry or separated in a zipper-like fashion from the same termini (unzip geometry). The force was applied using an atomic force microscope set-up and dynamic single-molecule force spectroscopy was performed to determine the rupture forces and energy landscape properties of the CC heterodimers under study. Using force as a denaturant, CC chain separation is initiated by helix uncoiling from the force application points. In the shear geometry, this allows uncoiling-assisted sliding parallel to the force vector or dissociation perpendicular to the force vector. Both competing processes involve the opening of stabilizing hydrophobic (and ionic) interactions. Also in the unzip geometry, helix uncoiling precedes the rupture of hydrophobic contacts.
In a first series of experiments, the focus was placed on canonical modifications in the hydrophobic core and the helix propensity. Using the shear geometry, it was shown that both a reduced core packing and helix propensity lower the thermodynamic and mechanical stability of the CC; however, with different effects on the energy landscape of the system. A less tightly packed hydrophobic core increases the distance to the transition state, with only a small effect on the barrier height. This originates from a more dynamic and less tightly packed core, which provides more degrees of freedom to respond to the applied force in the direction of the force vector. In contrast, a reduced helix propensity decreases both the distance to the transition state and the barrier height. The helices are ‘easier’ to unfold and the remaining structure is less thermodynamically stable so that dissociation perpendicular to the force axis can occur at smaller deformations.
Having elucidated how canonical sequence modifications influence CC mechanics, the pulling geometry was investigated in the next step. Using one and the same sequence, the force application points were exchanged and two different shear and one unzipping geometry were compared. It was shown that the pulling geometry determines the mechanical stability of the CC. Different rupture forces were observed in the different shear as well as in the unzipping geometries, suggesting that chain separation follows different pathways on the energy landscape. Whereas the difference between CC shearing and unzipping was anticipated and has also been observed for other biological structures, the observed difference for the two shear geometries was less expected. It can be explained with the structural asymmetry of the CC heterodimer. It is proposed that the direction of the α-helices, the different local helix propensities and the position of a polar asparagine in the hydrophobic core are responsible for the observed difference in the chain separation pathways. In combination, these factors are considered to influence the interplay between processes parallel and perpendicular to the force axis.
To obtain more detailed insights into the role of helix stability, helical turns were reinforced locally using artificial constraints in the form of covalent and dynamic ‘staples’. A covalent staple bridges to adjacent helical turns, thus protecting them against uncoiling. The staple was inserted directly at the point of force application in one helix or in the same terminus of the other helix, which did not experience the force directly. It was shown that preventing helix uncoiling at the point of force application reduces the distance to the transition state while slightly increasing the barrier height. This confirms that helix uncoiling is critically important for CC chain separation. When inserted into the second helix, this stabilizing effect is transferred across the hydrophobic core and protects the force-loaded turns against uncoiling. If both helices were stapled, no additional increase in mechanical stability was observed. When replacing the covalent staple with a dynamic metal-coordination bond, a smaller decrease in the distance to the transition was observed, suggesting that the staple opens up while the CC is under load.
Using fluorinated amino acids as another type of non-natural modification, it was investigated how the enhanced hydrophobicity and the altered packing at the interface influences CC mechanics. The fluorinated amino acid was inserted into one central heptad of one or both α-helices. It was shown that this substitution destabilized the CC thermodynamically and mechanically. Specifically, the barrier height was decreased and the distance to the transition state increased. This suggests that a possible stabilizing effect of the increased hydrophobicity is overruled by a disturbed packing, which originates from a bad fit of the fluorinated amino acid into the local environment. This in turn increases the flexibility at the interface, as also observed for the hydrophobic core substitution described above. In combination, this confirms that the arrangement of the hydrophobic side chains is an additional crucial factor determining the mechanical stability of CCs.
In conclusion, this work shows that knowledge of the thermodynamic stability alone is not sufficient to predict the mechanical stability of CCs. It is the interplay between helix propensity and hydrophobic core packing that defines the sequence-structure-mechanics relationship. In combination, both parameters determine the relative contribution of processes parallel and perpendicular to the force axis, i.e. helix uncoiling and uncoiling-assisted sliding as well as dissociation. This new mechanistic knowledge provides insight into the mechanical function of CCs in tissues and opens up the road for designing CCs with pre-defined mechanical properties. The library of mechanically characterized CCs developed in this work is a powerful starting point for a wide spectrum of applications, ranging from molecular force sensors to mechanosensitive crosslinks in protein nanostructures and synthetic extracellular matrix mimics.
Force plays a fundamental role in the regulation of biological processes. Cells can sense the mechanical properties of the extracellular matrix (ECM) by applying forces and transmitting mechanical signals. They further use mechanical information for regulating a wide range of cellular functions, including adhesion, migration, proliferation, as well as differentiation and apoptosis. Even though it is well understood that mechanical signals play a crucial role in directing cell fate, surprisingly little is known about the range of forces that define cell-ECM interactions at the molecular level.
Recently, synthetic molecular force sensor (MFS) designs have been established for measuring the molecular forces acting at the cell-ECM interface. MFSs detect the traction forces generated by cells and convert this mechanical input into an optical readout. They are composed of calibrated mechanoresponsive building blocks and are usually equipped with a fluorescence reporter system. Up to date, many different MFS designs have been introduced and successfully used for measuring forces involved in the adhesion of mammalian cells. These MFSs utilize different molecular building blocks, such as double-stranded deoxyribonucleic acid (dsDNA) molecules, DNA hairpins and synthetic polymers like polyethylene glycol (PEG). These currently available MFS designs lack ECM mimicking properties.
In this work, I introduce a new MFS building block for cell biology applications, derived from the natural ECM. It combines mechanical tunability with the ability to mimic the native cellular microenvironment. Inspired by structural ECM proteins with load bearing function, this new MFS design utilizes coiled coil (CC)-forming peptides. CCs are involved in structural and mechanical tasks in the cellular microenvironment and many of the key protein components of the cytoskeleton and the ECM contain CC structures. The well-known folding motif of CC structures, an easy synthesis via solid phase methods and the many roles CCs play in biological processes have inspired studies to use CCs as tunable model systems for protein design and assembly. All these properties make CCs ideal candidates as building blocks for MFSs. In this work, a series of heterodimeric CCs were designed, characterized and further used as molecular building blocks for establishing a novel, next-generation MFS prototype.
A mechanistic molecular understanding of their structural response to mechanical load is essential for revealing the sequence-structure-mechanics relationships of CCs. Here, synthetic heterodimeric CCs of different length were loaded in shear geometry and their mechanical response was investigated using a combination of atomic force microscope (AFM)-based single-molecule force spectroscopy (SMFS) and steered molecular dynamics (SMD) simulations. SMFS showed that the rupture forces of short heterodimeric CCs (3-5 heptads) lie in the range of 20-50 pN, depending on CC length, pulling geometry and the applied loading rate (dF/dt). Upon shearing, an initial rise in the force, followed by a force plateau and ultimately strand separation was observed in SMD simulations. A detailed structural analysis revealed that CC response to shear load depends on the loading rate and involves helix uncoiling, uncoiling-assisted sliding in the direction of the applied force and uncoiling-assisted dissociation perpendicular to the force axis.
The application potential of these mechanically characterized CCs as building blocks for MFSs has been tested in 2D cell culture applications with the goal of determining the threshold force for cell adhesion. Fully calibrated, 4- to 5-heptad long, CC motifs (CC-A4B4 and CC-A5B5) were used for functionalizing glass surfaces with MFSs. 3T3 fibroblasts and endothelial cells carrying mutations in a signaling pathway linked to cell adhesion and mechanotransduction processes were used as model systems for time-dependent adhesion experiments. A5B5-MFS efficiently supported cell attachment to the functionalized surfaces for both cell types, while A4B4-MFS failed to maintain attachment of 3T3 fibroblasts after the first 2 hours of initial cell adhesion. This difference in cell adhesion behavior demonstrates that the magnitude of cell-ECM forces varies depending on the cell type and further supports the application potential of CCs as mechanoresponsive and tunable molecular building blocks for the development of next-generation protein-based MFSs.This novel CC-based MFS design is expected to provide a powerful new tool for observing cellular mechanosensing processes at the molecular level and to deliver new insights into the mechanisms and forces involved. This MFS design, utilizing mechanically tunable CC building blocks, will not only allow for measuring the molecular forces acting at the cell-ECM interface, but also yield a new platform for the development of mechanically controlled materials for a large number of biological and medical applications.
Emotions are a central element of human experience. They occur with high frequency in everyday life and play an important role in decision making. However, currently there is no consensus among researchers on what constitutes an emotion and on how emotions should be investigated. This dissertation identifies three problems of current emotion research: the problem of ground truth, the problem of incomplete constructs and the problem of optimal representation. I argue for a focus on the detailed measurement of emotion manifestations with computer-aided methods to solve these problems. This approach is demonstrated in three research projects, which describe the development of methods specific to these problems as well as their application to concrete research questions.
The problem of ground truth describes the practice to presuppose a certain structure of emotions as the a priori ground truth. This determines the range of emotion descriptions and sets a standard for the correct assignment of these descriptions. The first project illustrates how this problem can be circumvented with a multidimensional emotion perception paradigm which stands in contrast to the emotion recognition paradigm typically employed in emotion research. This paradigm allows to calculate an objective difficulty measure and to collect subjective difficulty ratings for the perception of emotional stimuli. Moreover, it enables the use of an arbitrary number of emotion stimuli categories as compared to the commonly used six basic emotion categories. Accordingly, we collected data from 441 participants using dynamic facial expression stimuli from 40 emotion categories. Our findings suggest an increase in emotion perception difficulty with increasing actor age and provide evidence to suggest that young adults, the elderly and men underestimate their emotion perception difficulty. While these effects were predicted from the literature, we also found unexpected and novel results. In particular, the increased difficulty on the objective difficulty measure for female actors and observers stood in contrast to reported findings. Exploratory analyses revealed low relevance of person-specific variables for the prediction of emotion perception difficulty, but highlighted the importance of a general pleasure dimension for the ease of emotion perception.
The second project targets the problem of incomplete constructs which relates to vaguely defined psychological constructs on emotion with insufficient ties to tangible manifestations. The project exemplifies how a modern data collection method such as face tracking data can be used to sharpen these constructs on the example of arousal, a long-standing but fuzzy construct in emotion research. It describes how measures of distance, speed and magnitude of acceleration can be computed from face tracking data and investigates their intercorrelations. We find moderate to strong correlations among all measures of static information on one hand and all measures of dynamic information on the other. The project then investigates how self-rated arousal is tied to these measures in 401 neurotypical individuals and 19 individuals with autism. Distance to the neutral face was predictive of arousal ratings in both groups. Lower mean arousal ratings were found for the autistic group, but no difference in correlation of the measures and arousal ratings could be found between groups. Results were replicated in a high autistic traits group consisting of 41 participants. The findings suggest a qualitatively similar perception of arousal for individuals with and without autism. No correlations between valence ratings and any of the measures could be found which emphasizes the specificity of our tested measures for the construct of arousal.
The problem of optimal representation refers to the search for the best representation of emotions and the assumption that there is a one-fits-all solution. In the third project we introduce partial least squares analysis as a general method to find an optimal representation to relate two high-dimensional data sets to each other. The project demonstrates its applicability to emotion research on the question of emotion perception differences between men and women. The method was used with emotion rating data from 441 participants and face tracking data computed on 306 videos. We found quantitative as well as qualitative differences in the perception of emotional facial expressions between these groups. We showed that women’s emotional perception systematically captured more of the variance in facial expressions. Additionally, we could show that significant differences exist in the way that women and men perceive some facial expressions which could be visualized as concrete facial expression sequences. These expressions suggest differing perceptions of masked and ambiguous facial expressions between the sexes. In order to facilitate use of the developed method by the research community, a package for the statistical environment R was written. Furthermore, to call attention to the method and its usefulness for emotion research, a website was designed that allows users to explore a model of emotion ratings and facial expression data in an interactive fashion.
This dissertation combines field and geochemical observations and analyses with numerical modeling to understand the formation of vein-hosted Sn-W ore in the Panasqueira deposit of Portugal, which is among the ten largest worldwide. The deposit is located above a granite body that is altered by magmatic-hydrothermal fluids in its upper part (greisen). These fluids are thought to be the source of metals, but that was still under debate. The goal of this study is to determine the composition and temperature of hydrothermal fluids at Panasqueira, and with that information to construct a numerical model of the hydrothermal system. The focus is on analysis of the minerals tourmaline and white mica, which formed during mineralization and are widespread throughout the deposit. Tourmaline occurs mainly in alteration zones around mineralized veins and is less abundant in the vein margins. White mica is more widespread. It is abundant in vein margins as well as alteration zones, and also occurs in the granite greisen. The laboratory work involved in-situ microanalysis of major- and trace elements in tourmaline and white mica, and boron-isotope analysis in both minerals by secondary ion mass spectrometry (SIMS).
The boron-isotope composition of tourmaline and white mica suggests a magmatic source. Comparison of hydrothermally-altered and unaltered rocks from drill cores shows that the ore metals (W, Sn, Cu, and Zn) and As, F, Li, Rb, and Cs were introduced during the alteration. Most of these elements are also enriched in tourmaline and mica, which confirms their potential value as exploration guides to Sn-W ores elsewhere.
The thermal evolution of the hydrothermal system was estimated by B-isotope exchange thermometry and the Ti-in-quartz method. Both methods yielded similar temperatures for the early hydrothermal phase: 430° to 460°C for B-isotopes and 503° ± 24°C for Ti-in-quartz. Mineral pairs from a late fault zone yield significantly lower median temperatures of 250°C. The combined results of thermometry with variations in chemical and B-isotope composition of tourmaline and mica suggest that a similar magmatic-hydrothermal fluid was active at all stages of mineralization. Mineralization in the late stage shows the same B-isotope composition as in the main stage despite a ca. 250°C cooling, which supports a multiple injection model of magmatic-hydrothermal fluids.
Two-dimensional numerical simulations of convection in a multiphase NaCl hydrothermal system were conducted: (a) in order to test a new approach (lower dimensional elements) for flow through fractures and faults and (b) in order to identify conditions for horizontal fluid flow as observed in the flat-lying veins at Panasqueira. The results show that fluid flow over an intrusion (heat and fluid source) develops a horizontal component if there is sufficient fracture connectivity. Late, steep fault zones have been identified in the deposit area, which locally contain low-temperature Zn-Pb mineralization. The model results confirm that the presence of subvertical faults with enhanced permeability play a crucial role in the ascent of magmatic fluids to the surface and the recharge of meteoric waters. Finally, our model results suggest that recharge of meteoric fluids and mixing processes may be important at later stages, while flow of magmatic fluids dominate the early stages of the hydrothermal fluid circulation.