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Bridging metabolomics with plant phenotypic responses is challenging. Multivariate analyses account for the existing dependencies among metabolites, and regression models in particular capture such dependencies in search for association with a given trait. However, special care should be undertaken with metabolomics data. Here we propose a modeling workflow that considers all caveats imposed by such large data sets.
The soft error rate (SER) due to heavy-ion irradiation of a clock tree is investigated in this paper. A method for clock tree SER prediction is developed, which employs a dedicated soft error analysis tool to characterize the single-event transient (SET) sensitivities of clock inverters and other commercial tools to calculate the SER through fault-injection simulations. A test circuit including a flip-flop chain and clock tree in a 65 nm CMOS technology is developed through the automatic ASIC design flow. This circuit is analyzed with the developed method to calculate its clock tree SER. In addition, this circuit is implemented in a 65 nm test chip and irradiated by heavy ions to measure its SER resulting from the SETs in the clock tree. The experimental and calculation results of this case study present good correlation, which verifies the effectiveness of the developed method.
In near-surface geophysics, small portable loop-loop electro-magnetic induction (EMI) sensors using harmonic sources with a constant and rather small frequency are increasingly used to investigate the electrical properties of the subsurface. For such sensors, the influence of electrical conductivity and magnetic permeability on the EMI response is well-understood. Typically, data analysis focuses on reconstructing an electrical conductivity model by inverting the out-of-phase response. However, in a variety of near-surface applications, magnetic permeability (or susceptibility) models derived from the in-phase (IP) response may provide important additional information. In view of developing a fast 3D inversion procedure of the IP response for a dense grid of measurement points, we first analyze the 3D sensitivity functions associated with a homogeneous permeable half-space. Then, we compare synthetic data computed using a linear forward-modeling method based on these sensitivity functions with synthetic data computed using full nonlinear forward-modeling methods. The results indicate the correctness and applicability of our linear forward-modeling approach. Furthermore, we determine the advantages of converting IP data into apparent permeability, which, for example, allows us to extend the applicability of the linear forward-modeling method to high-magnetic environments. Finally, we compute synthetic data with the linear theory for a model consisting of a controlled magnetic target and compare the results with field data collected with a four-configuration loop-loop EMI sensor. With this field-scale experiment, we determine that our linear forward-modeling approach can reproduce measured data with sufficiently small error, and, thus, it represents the basis for developing efficient inversion approaches.
A challenge for eco-evolutionary research is to better understand the effect of climate and landscape changes on species and their distribution. Populations of species can respond to changes in their environment through local genetic adaptation or plasticity, dispersal, or local extinction. The individual-based modeling (IBM) approach has been repeatedly applied to assess organismic responses to environmental changes. IBMs simulate emerging adaptive behaviors from the basic entities upon which both ecological and evolutionary mechanisms act. The objective of this review is to summarize the state of the art of eco-evolutionary IBMs and to explore to what degree they already address the key responses of organisms to environmental change. In this, we identify promising approaches and potential knowledge gaps in the implementation of eco-evolutionary mechanisms to motivate future research. Using mainly the ISI Web of Science, we reveal that most of the progress in eco-evolutionary IBMs in the last decades was achieved for genetic adaptation to novel local environmental conditions. There is, however, not a single eco-evolutionary IBM addressing the three potential adaptive responses simultaneously. Additionally, IBMs implementing adaptive phenotypic plasticity are rare. Most commonly, plasticity was implemented as random noise or reaction norms. Our review further identifies a current lack of models where plasticity is an evolving trait. Future eco-evolutionary models should consider dispersal and plasticity as evolving traits with their associated costs and benefits. Such an integrated approach could help to identify conditions promoting population persistence depending on the life history strategy of organisms and the environment they experience.