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Institut
- Institut für Physik und Astronomie (20)
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In this work, some new results to exploit the recurrence properties of quasiperiodic dynamical systems are presented by means of a two dimensional visualization technique, Recurrence Plots(RPs). Quasiperiodicity is the simplest form of dynamics exhibiting nontrivial recurrences, which are common in many nonlinear systems. The concept of recurrence was introduced to study the restricted three body problem and it is very useful for the characterization of nonlinear systems. I have analyzed in detail the recurrence patterns of systems with quasiperiodic dynamics both analytically and numerically. Based on a theoretical analysis, I have proposed a new procedure to distinguish quasiperiodic dynamics from chaos. This algorithm is particular useful in the analysis of short time series. Furthermore, this approach demonstrates to be efficient in recognizing regular and chaotic trajectories of dynamical systems with mixed phase space. Regarding the application to real situations, I have shown the capability and validity of this method by analyzing time series from fluid experiments.
As land-cover conversion continues to expand into ever more remote areas in the humid tropics, montane rainforests are increasingly threatened. In the south Ecuadorian Andes, they are not only subject to man-made disturbances but also to naturally occurring landslides. I was interested in the impact of this ecosystem dynamics on a key parameter of the hydrologic cycle, the soil saturated hydraulic conductivity (synonym: permeability; Ks from here on), because it is a sensitive indicator for soil disturbances. My general objective was to quantify the effects of the regional natural and human disturbances on the saturated hydraulic conductivity and to describe the resulting spatial-temporal patterns. The main hypotheses were: 1) disturbances cause an apparent displacement of the less permeable soil layer towards the surface, either due to a loss of the permeable surface soil after land-sliding, or as a consequence of the surface soil compaction under cattle pastures; 2) ‘recovery’ from disturbance, either because of landslide re-vegetation or because of secondary succession after pasture abandonment, involves an apparent displacement of the less permeable layer back towards the original depth an 3) disturbances cause a simplification of the Ks spatial structure, i.e. the spatially dependent random variation diminishes; the subsequent recovery entails the re-establishment of the original structure. In my first study, I developed a synthesis of recent geostatistical research regarding its applicability to soil hydraulic data, including exploratory data analysis and variogram estimation techniques; I subsequently evaluated the results in terms of spatial prediction uncertainty. Concerning the exploratory data analysis, my main results were: 1) Gaussian uni- and bivariate distributions of the log-transformed data; 2) the existence of significant local trends; 3) no need for robust estimation; 4) no anisotropic variation. I found partly considerable differences in covariance parameters resulting from different variogram estimation techniques, which, in the framework of spatial prediction, were mainly reflected in the spatial connectivity of the Ks-field. Ignoring the trend component and an arbitrary use of robust estimators, however, would have the most severe consequences in this respect. Regarding variogram modeling, I encouraged restricted maximum likelihood estimation because of its accuracy and independence on the selected lags needed for experimental variograms. The second study dealt with the Ks spatial-temporal pattern in the sequences of natural and man-made disturbances characteristic for the montane rainforest study area. To investigate the disturbance effects both on global means and the spatial structure of Ks, a combined design-and model-based sampling approach was used for field-measurements at soil depths of 12.5, 20, and 50 cm (n=30-150/depth) under landslides of different ages (2 and 8 years), under actively grazed pasture, fallows following pasture abandonment (2 to 25 years of age), and under natural forest. Concerning global means, our main findings were 1) global means of the soil permeability generally decrease with increasing soil depth; 2) no significant Ks differences can be observed among landslides and compared to the natural forest; 3) a distinct permeability decrease of two orders of magnitude occurs after forest conversion to pasture at shallow soil depths, and 4) the slow regeneration process after pasture abandonment requires at least one decade. Regarding the Ks spatial structure, we found that 1) disturbances affect the Ks spatial structure in the topsoil, and 2) the largest differences in spatial patterns are associated with the subsoil permeability. In summary, the regional landslide activity seems to affect soil hydrology to a marginal extend only, which is in contrast to the pronounced drop of Ks after forest conversion. We used this spatial-temporal information combined with local rain intensities to assess the partitioning of rainfall into vertical and lateral flowpaths under undisturbed, disturbed, and regenerating land-cover types in the third study. It turned out that 1) the montane rainforest is characterized by prevailing vertical flowpaths in the topsoil, which can switch to lateral directions below 20 cm depth for a small number of rain events, which may, however, transport a high portion of the annual runoff; 2) similar hydrological flowpaths occur under the landslides except for a somewhat higher probability of impermeable layer formation in the topsoil of a young landslide, and 3) pronounced differences in runoff components can be observed for the human disturbance sequence involving the development of near-surface impeding layers for 24, 44, and 8 % of rain events for pasture, a two-year-old fallow, and a ten-year-old fallow, respectively.
The mammalian brain is, with its numerous neural elements and structured complex connectivity, one of the most complex systems in nature. Recently, large-scale corticocortical connectivities, both structural and functional, have received a great deal of research attention, especially using the approach of complex networks. Here, we try to shed some light on the relationship between structural and functional connectivities by studying synchronization dynamics in a realistic anatomical network of cat cortical connectivity. We model the cortical areas by a subnetwork of interacting excitable neurons (multilevel model) and by a neural mass model (population model). With weak couplings, the multilevel model displays biologically plausible dynamics and the synchronization patterns reveal a hierarchical cluster organization in the network structure. We can identify a group of brain areas involved in multifunctional tasks by comparing the dynamical clusters to the topological communities of the network. With strong couplings of multilevel model and by using neural mass model, the dynamics are characterized by well-defined oscillations. The synchronization patterns are mainly determined by the node intensity (total input strengths of a node); the detailed network topology is of secondary importance. The biologically improved multilevel model exhibits similar dynamical patterns in the two regimes. Thus, the study of synchronization in a multilevel complex network model of cortex can provide insights into the relationship between network topology and functional organization of complex brain networks.
The intergalactic medium is kept highly photoionised by the intergalactic UV background radiation field generated by the overall population of quasars and galaxies. In the vicinity of sources of UV photons, such as luminous high-redshift quasars, the UV radiation field is enhanced due to the local source contribution. The higher degree of ionisation is visible as a reduced line density or generally as a decreased level of absorption in the Lyman alpha forest of neutral hydrogen. This so-called proximity effect has been detected with high statistical significance towards luminous quasars. If quasars radiate rather isotropically, background quasar sightlines located near foreground quasars should show a region of decreased Lyman alpha absorption close to the foreground quasar. Despite considerable effort, such a transverse proximity effect has only been detected in a few cases. So far, studies of the transverse proximity effect were mostly limited by the small number of suitable projected pairs or groups of high-redshift quasars. With the aim to substantially increase the number of quasar groups in the vicinity of bright quasars we conduct a targeted survey for faint quasars around 18 well-studied quasars at employing slitless spectroscopy. Among the reduced and calibrated slitless spectra of 29000 objects on a total area of 4.39 square degrees we discover in total 169 previously unknown quasar candidates based on their prominent emission lines. 81 potential z>1.7 quasars are selected for confirmation by slit spectroscopy at the Very Large Telescope (VLT). We are able to confirm 80 of these. 64 of the newly discovered quasars reside at z>1.7. The high success rate of the follow-up observations implies that the majority of the remaining candidates are quasars as well. In 16 of these groups we search for a transverse proximity effect as a systematic underdensity in the HI Lyman alpha absorption. We employ a novel technique to characterise the random absorption fluctuations in the forest in order to estimate the significance of the transverse proximity effect. Neither low-resolution spectra nor high-resolution spectra of background quasars of our groups present evidence for a transverse proximity effect. However, via Monte Carlo simulations the effect should be detectable only at the 1-2sigma level near three of the foreground quasars. Thus, we cannot distinguish between the presence or absence of a weak signature of the transverse proximity effect. The systematic effects of quasar variability, quasar anisotopy and intrinsic overdensities near quasars likely explain the apparent lack of the transverse proximity effect. Even in absence of the systematic effects, we show that a statistically significant detection of the transverse proximity effect requires at least 5 medium-resolution quasar spectra of background quasars near foreground quasars whose UV flux exceeds the UV background by a factor 3. Therefore, statistical studies of the transverse proximity effect require large numbers of suitable pairs. Two sightlines towards the central quasars of our survey fields show intergalactic HeII Lyman alpha absorption. A comparison of the HeII absorption to the corresponding HI absorption yields an estimate of the spectral shape of the intergalactic UV radiation field, typically parameterised by the HeII/HI column density ratio eta. We analyse the fluctuating UV spectral shape on both lines of sight and correlate it with seven foreground quasars. On the line of sight towards Q0302-003 we find a harder radiation field near 4 foreground quasars. In the direct vicinity of the quasars eta is consistent with values of 25-100, whereas at large distances from the quasars eta>200 is required. The second line of sight towards HE2347-4342 probes lower redshifts where eta is directly measurable in the resolved HeII forest. Again we find that the radiation field near the 3 foreground quasars is significantly harder than in general. While eta still shows large fluctuations near the quasars, probably due to radiative transfer, the radiation field is on average harder near the quasars than far away from them. We interpret these discoveries as the first detections of the transverse proximity effect as a local hardness fluctuation in the UV spectral shape. No significant HI proximity effect is predicted for the 7 foreground quasars. In fact, the HI absorption near the quasars is close to or slightly above the average, suggesting that the weak signature of the transverse proximity effect is masked by intrinsic overdensities. However, we show that the UV spectral shape traces the transverse proximity effect even in overdense regions or at large distances. Therefore, the spectral hardness is a sensitive physical measure of the transverse proximity effect that is able to break the density degeneracy affecting the traditional searches.
There is already strong evidence that temperate lakes have been highly vulnerable to human induced climate warming during the last century. Hitherto climate impact studies have mainly focussed on the impacts of the recent long-term warming in winter and spring and little is known on the influence of climate warming on temperate lakes in summer. In the present thesis, I studied some aspects, which may have been strongly involved in determining the response of a lake to climate warming in summer. Thereby I have focussed on climate induced impacts on the thermal characteristics and the phenology and abundance of summer plankton in a shallow polymictic lake (Müggelsee, Germany). First, the influence of climate warming on the phenology and abundance of the lake plankton was investigated across seasons. Fast-growing spring phytoplankton and zooplankton (Daphnia) advanced largely synchronously, whereas long-term changes in the phenology of slow-growing summer zooplankton were clearly species-specific and not synchronised. The phenology and/or abundance of several summer copepod species changed according to their individual thermal requirements at decisive developmental stages such as emergence from diapause in spring. The study emphasises that not only the degree of warming, but also its timing within the annual cycle is of great ecological importance. To analyse the impact of climate change on the thermal characteristics of the lake, I examined the long-term development of the daily epilimnetic temperature extrema during summer. The study demonstrated for the first time for lakes that the daily epilimnetic minima (during nighttime) have increased more rapidly than the daily epilimnetic maxima (during daytime), resulting in a distinct decrease in the daily epilimnetic temperature range. This day-night asymmetry in epilimnetic temperature was likely caused by an increased nighttime emission of long-wave radiation from the atmosphere. This underlines that not only increases in air temperature, but also changes in other meteorological variables such as wind speed, relative humidity and cloud cover may play an important role in determining the lake temperature with respect to further climate change. Furthermore, a short-term analysis on the mixing regime of the polymictic lake was conducted to examine the frequency and duration of stratification events and their impacts on dissolved oxygen, dissolved nutrients and summer phytoplankton. Even during the longest stratification events (heatwaves in 2003 and 2006) the thermal characteristics of the lake differed from those typically found in shallow dimictic lakes, which exhibit a continuous stratification during summer. Particularly, hypolimnetic temperatures were higher, favouring the depletion of oxygen and the accumulation of dissolved nutrient in the hypolimnion. Thermal stratification will be very likely amplified in the future, thus, I conclude that polymictic lakes will be very vulnerable to alterations in the thermal regime with respect to projections of further climate change during summer. Finally, a long-term case study on the long and short-term changes in the development of the planktonic larvae of the freshwater mussel Dreissena polymorpha was performed to analyse the impacts of simultaneous changes in the thermal and in the trophic regime of the lake. Both the climate warming and the decrease in external nutrient load were important in determining the abundance of the pelagic larvae by affecting different features of the life-history of this species throughout the warm season. The long-term increase in the abundance and length of larvae was related to the decrease in external nutrient loading and the change in phytoplankton composition. However, the recent heatwaves in 2003 and 2006 have offset this positive effect on larval abundance, due to unfavourable low oxygen concentrations that had resulted from extremely long stratification events, mimicking the effects of nutrient enrichment. Climate warming may thus induce counteracting effects in productive shallow lakes that underwent lake restoration through a decrease in external nutrient loading. I conclude that not only the nature of climate change and thus the timing of climate warming throughout the seasons and the occurrence of climatic extremes as heatwaves, but also site-specific lake conditions as the thermal mixing regime and the trophic state are crucial factors governing the impacts of climate warming on internal lake processes during summer. Consequently, further climate impact research on lake functioning should focus on how the different lake types respond to the complex environmental forcing in summer, to allow for a comprehensive understanding of human induced environmental changes in lakes.
In semi-arid savannah ecosystems, the vegetation structure and composition, i.e. the architecture of trees, shrubs, grass tussocks and herbaceous plants, offer a great variety of habitats and niches to sustain animal diversity. In the last decades intensive human land use practises like livestock farming have altered the vegetation in savannah ecosystems worldwide. Extensive grazing leads to a reduction of the perennial and herbaceous vegetation cover, which results in an increased availability of bare soil. Both, the missing competition with perennial grasses and the increase of bare soils favour shrub on open ground and lead to area-wide shrub encroachment. As a consequence of the altered vegetation structure and composition, the structural diversity declines. It has been shown that with decreasing structural diversity animal diversity decline across a variety of taxa. Knowledge on the effects of overgrazing on reptiles, which are an important part of the ecosystem, are missing. Furthermore, the impact of habitat degradation on factors of a species population dynamic and life history, e.g., birth rate, survival rate, predation risk, space requirements or behavioural adaptations are poorly known. Therefore, I investigated the impact of overgrazing on the reptile community in the southern Kalahari. Secondly I analysed population dynamics and the behaviour of the Spotted Sand Lizard, Pedioplanis l. lineoocellata. All four chapters clearly demonstrate that habitat degradation caused by overgrazing had a severe negative impact upon (i) the reptile community as a whole and (ii) on population parameters of Pedioplanis l. lineoocellata. Chapter one showed a significant decline of regional reptile diversity and abundance in degraded habitats. In chapter two I demonstrated that P. lineoocellata moves more frequently, spends more time moving and covers larger distances in degraded than in non-degraded habitats. In addition, home range size of the lizard species increases in degraded habitats as shown by chapter three. Finally, chapter four showed the negative impacts of overgrazing on several population parameters of P. lineoocellata. Absolute population size of adult and juvenile lizards, survival rate and birth rate are significantly lower in degraded habitats. Furthermore, the predation risk was greatly increased in degraded habitats. A combination of a variety of aspects can explain the negative impact of habitat degradation on reptiles. First, reduced prey availability negatively affects survival rate, the birth rate and overall abundance. Second, the loss of perennial plant cover leads to a loss of niches and to a reduction of opportunities to thermoregulate. Furthermore, a loss of cover and is associated with increased predation risk. A major finding of my thesis is that the lizard P. lineoocellata can alter its foraging strategy. Species that are able to adapt and change behaviour, such as P. lineoocellata can effectively buffer against changes in their environment. Furthermore, perennial grass cover can be seen as a crucial ecological component of the vegetation in the semi-arid savannah system of the southern Kalahari. If perennial grass cover is reduced to a certain degree reptile diversity will decline and most other aspects of reptile life history will be negatively influenced. Savannah systems are characterised by a mixture of trees, shrubs and perennial grasses. These three vegetation components determine the composition and structure of the vegetation and accordingly influence the faunal diversity. Trees are viewed as keystone structures and focal points of animal activity for a variety of species. Trees supply animals with shelter, shade and food and act as safe sites, nesting sites, observation posts and foraging sites. Recent research demonstrates a positive influence of shrub patches on animal diversity. Moreover, it would seem that intermediate shrub cover can also sustain viable populations in savannah landscapes as has been demonstrated for small carnivores and rodent species. The influence of perennial grasses on faunal diversity did not receive the same attention as the influence of trees and shrubs. In my thesis I didn’t explicitly measure the direct effects of perennial grasses but my results strongly imply that it has an important role. If the perennial grass cover is significantly depleted my results suggest it will negatively influence reptile diversity and abundance and on several populations parameters of P. lineoocellata. Perennial grass cover is associated with the highest prey abundance, reptile diversity and reptile abundance. It provides reptiles both a refuge from predators and opportunities to optimise thermoregulation. The relevance of each of the three vegetation structural elements is different for each taxa and species. In conclusion, I can all three major vegetation structures in the savannah system are important for faunal diversity.
Mafic magmatism in the Eastern Cordillera and Putumayo Basin, Colombia : causes and consequences
(2007)
The Eastern Cordillera of Colombia is mainly composed of sedimentary rocks deposited since early Mesozoic times. Magmatic rocks are scarce. They are represented only by a few locally restricted occurrences of dykes and sills of mafic composition presumably emplaced in the Cretaceous and of volcanic rocks of Neogene age. This work is focused on the study of the Cretaceous magmatism with the intention to understand the processes causing the genesis of these rocks and their significance in the regional tectonic setting of the Northern Andes. The magmatic rocks cut the Cretaceous sedimentary succession of black shales and marlstones that crop out in both flanks of the Eastern Cordillera. The studied rocks were classified as gabbros (Cáceres, Pacho, Rodrigoque), tonalites (Cáceres, La Corona), diorites and syenodiorites (La Corona), pyroxene-hornblende gabbros (Pacho), and pyroxene-hornblendites (Pajarito). The gabbroic samples are mainly composed of plagioclase, clinopyroxene, and/or green to brown hornblende, whereas the tonalitic rocks are mainly composed of plagioclase and quartz. The samples are highly variable in crystal sizes from fine- to coarse-grained. Accessory minerals such as biotite, titanite and zircon are present. Some samples are characterized by moderate to strong alteration, and show the presence of epidote, actinolite and chlorite. Major and trace element compositions of the rocks as well as the rock-forming minerals show significant differences in the geochemical and petrological characteristics for the different localities, suggesting that this magmatism does not result from a single melting process. The wide compositional spectrum of trace elements in the intrusions is characteristic for different degrees of mantle melting and enrichment of incompatible elements. MORB- and OIB-like compositions suggest at least two different sources of magma with tholeiitic and alkaline affinity, respectively. Evidence of slab-derived fluids can be recognized in the western part of the basin reflected in higher Ba/Nb and Sr/P ratios and also in the Sr radiogenic isotope ratios, which is possible a consequence of metasomatism in the mantle due to processes related to the presence of a previously subducted slab. The trace element patterns evidence an extensional setting in the Cretaceous basin producing a continental rift, with continental crust being stretched until oceanic crust was generated in the last stages of this extension. Electron microprobe analyses (EMPA) of the major elements and synchrotron radiation micro-X-ray fluorescence (μ-SRXRF) analyses of the trace element composition of the early crystallized minerals of the intrusions (clinopyroxenes and amphiboles) reflect the same dual character that has been found in the bulk-rock analyses. Despite the observed alteration of the rocks, the mineral composition shows evidences for an enriched and a relative depleted magma source. Even the normalization of the trace element concentrations of clinopyroxenes and amphiboles to the whole rock nearly follows the pattern predicted by published partition coefficients, suggesting that the alteration did not change the original trace element compositions of the investigated minerals. Sr-Nd-Pb isotope data reveal a large isotopic variation but still suggest an initial origin of the magmas in the mantle. Samples have moderate to highly radiogenic compositions of 143Nd/144Nd and high 87Sr/86Sr ratios and follow a trend towards enriched mantle compositions, like the local South American Paleozoic crust. The melts experienced variable degrees of contamination by sediments, crust, and seawater. The age corrected Pb isotope ratios show two separated groups of samples. This suggests that the chemical composition of the mantle below the Northern Andes has been modified by the interaction with other components resulting in a heterogeneous combination of materials of diverse origins. Although previous K/Ar age dating have shown that the magmatism took place in the Cretaceous, the high error of the analyses and the altered nature of the investigated minerals did preclude reliable interpretations. In the present work 40Ar/39Ar dating was carried out. The results show a prolonged history of magmatism during the Cretaceous over more than 60 Ma, from ~136 to ~74 Ma (Hauterivian to Campanian). Pre-Cretaceous rifting phases occurred in the Triassic-Jurassic for the western part of the basin and in the Paleozoic for the eastern part. Those previous rifting phases are decisive mechanisms controlling the localization and composition of the Cretaceous magmatism. Therefore, it is the structural position and not the age of the intrusions which preconditions the kind of magmatism and the degree of melting. The divergences on ages are the consequence of the segmentation of the basin in several sub-basins which stretching, thermal evolution and subsidence rate evolved independently. The first hypothesis formulated at the beginning of this investigation was that the Cretaceous gabbroic intrusions identified in northern Ecuador could be correlated with the intrusions described in the Eastern Cordillera. The mafic occurrences should mark the location of the most subsiding places of the large Cretaceous basin in northern South America. For this reason, the gabbroic intrusions cutting the Cretaceous succession in the Putumayo Basin, southern Colombia, were investigated. The results of the studies were quite unexpected. The petrologic and geochemical character of the magmatic rocks indicates subduction-related magmatism. K/Ar dating of amphibole yields a Late Miocene to Pliocene age (6.1 ± 0.7 Ma) for the igneous event in the basin. Although there is no correlation between this magmatic event and the Cretaceous magmatic event, the data obtained has significant tectonic and economic implications. The emplacement of the Neogene gabbroic rocks coincides with the late Miocene/Pliocene Andean orogenic uplift as well as with a significant pulse of hydrocarbon generation and expulsion.
This work is concerned with the spatio-temporal structures that emerge when non-identical, diffusively coupled oscillators synchronize. It contains analytical results and their confirmation through extensive computer simulations. We use the Kuramoto model which reduces general oscillatory systems to phase dynamics. The symmetry of the coupling plays an important role for the formation of patterns. We have studied the ordering influence of an asymmetry (non-isochronicity) in the phase coupling function on the phase profile in synchronization and the intricate interplay between this asymmetry and the frequency heterogeneity in the system. The thesis is divided into three main parts. Chapter 2 and 3 introduce the basic model of Kuramoto and conditions for stable synchronization. In Chapter 4 we characterize the phase profiles in synchronization for various special cases and in an exponential approximation of the phase coupling function, which allows for an analytical treatment. Finally, in the third part (Chapter 5) we study the influence of non-isochronicity on the synchronization frequency in continuous, reaction diffusion systems and discrete networks of oscillators.
During the last decades, the global change of the environment has caused a dramatic loss of habitats and species. In Central Europe, open habitats are particularly affected. The main objective of this thesis was to experimentally test the suitability of wild megaherbivore grazing as a conservation tool to manage open habitats. We studied the effect of wild ungulates in a 160 ha game preserve in NE Germany in three successional stages (i) Corynephorus canescens-dominated grassland, (ii) ruderal tall forb vegetation dominated by Tanacetum vulgare and (iii) Pinus sylvestris-pioneer forest over three years. Our results demonstrate that wild megaherbivores considerably affected species composition and delayed successional pathways in open habitats. Grazing effects differed considerably between successional stages: species richness was higher in grazed ruderal and pioneer forest plots, but not in the Corynephorus sites. Species composition changed significantly in the Corynephorus and ruderal sites. Grazed ruderal sites had turned into sites with very short vegetation dominated by Agrostis spp. and the moss Brachythecium albicans, most species did not flower. Woody plant cover was significantly affected only in the pioneer forest sites. Young pine trees were severely damaged and tree height was considerably reduced, leading to a “Pinus-macchie”-appearance. Ecological patterns and processes are known to vary with spatial scale. Since grazing by megaherbivores has a strong spatial component, the scale of monitoring success of grazing may largely differ among and within different systems. Thus, the second aim of this thesis was to test whether grazing effects are consistent over different spatial scales, and to give recommendations for appropriate monitoring scales. For this purpose, we studied grazing effects on plant community structure using multi-scale plots that included three nested spatial scales (0.25 m2, 4 m2, and 40 m2). Over all vegetation types, the scale of observation directly affected grazing effects on woody plant cover and on floristic similarity, but not on the proportion of open soil and species richness. Grazing effects manifested at small scales regarding floristic similarity in pioneer forest and ruderal sites and regarding species richness in ruderal sites. The direction of scale-effects on similarity differed between vegetation types: Grazing effects on floristic similarity in the Corynephorus sites were significantly higher at the medium and large scale, while in the pioneer forest sites they were significantly higher at the smallest scale. Disturbances initiate vegetation changes by creating gaps and affecting colonization and extinction rates. The third intention of the thesis was to investigate the effect of small-scale disturbances on the species-level. In a sowing experiment, we studied early establishment probabilities of Corynephorus canescens, a key species of open sandy habitats. Applying two different regimes of mechanical ground disturbance (disturbed and undisturbed) in the three successional stages mentioned above, we focused on the interactive effects of small-scale disturbances, successional stage and year-to-year variation. Disturbance led to higher emergence in a humid and to lower emergence in a very dry year. Apparently, when soil moisture was sufficient, the main factor limiting C. canescens establishment was competition, while in the dry year water became the limiting factor. Survival rates were not affected by disturbance. In humid years, C. canescens emerged in higher numbers in open successional stages while in the dry year, emergence rates were higher in late stages, suggesting an important role of late successional stages for the persistence of C. canescens. We conclude that wild ungulate grazing is a useful tool to slow down succession and to preserve a species-rich, open landscape, because it does not only create disturbances, thereby supporting early successional stages, but at the same time efficiently controls woody plant cover. However, wild ungulate grazing considerably changed the overall appearance of the landscape. Additional measures like shifting exclosures might be necessary to allow vulnerable species to flower and reproduce. We further conclude that studying grazing impacts on a range of scales is crucial, since different parameters are affected at different spatial scales. Larger scales are suitable for assessing grazing impact on structural parameters like the proportion of open soil or woody plant cover, whereas species richness and floristic similarity are affected at smaller scales. Our results further indicate that the optimal strategy for promoting C. canescens is to apply disturbances just before seed dispersal and not during dry years. Further, at the landscape scale, facilitation by late successional species may be an important mechanism for the persistence of protected pioneer species.
The overall program "arborescent numbers" is to similarly perform the constructions from the natural numbers (N) to the positive fractional numbers (Q+) to positive real numbers (R+) beginning with (specific) binary trees instead of natural numbers. N can be regarded as the associative binary trees. The binary trees B and the left-commutative binary trees P allow the hassle-free definition of arbitrary high arithmetic operations (hyper ... hyperpowers). To construct the division trees the algebraic structure "coppice" is introduced which is a group with an addition over which the multiplication is right-distributive. Q+ is the initial associative coppice. The present work accomplishes one step in the program "arborescent numbers". That is the construction of the arborescent equivalent(s) of the positive fractional numbers. These equivalents are the "division binary trees" and the "fractional trees". A representation with decidable word problem for each of them is given. The set of functions f:R1->R1 generated from identity by taking powers is isomorphic to P and can be embedded into a coppice by taking inverses.
Magnetorotational instability (MRI) is one of the most important and most common instabilities in astrophysics. Today it is widely accepted that it serves as a major source of turbulent viscosity in accretion disks, the most energy efficient objects in the universe. The importance of the MRI for astrophysics has been realized only in recent fifteen years. However, originally it was discovered much earlier, in 1959, in a very different context. Theoretical flow of a conducting liquid confined between differentially rotating cylinders in the presence of an external magnetic field was analyzed. The central conclusion is that the additional magnetic field parallel to the axis of rotation can destabilize otherwise stable flow. Theory of non-magnetized fluid motion between rotating cylinders has much longer history, though. It has been studied already in 1888 and today such setup is usually referred as a Taylor-Couette flow. To prove experimentally the existence of MRI in a magnetized Taylor-Couette flow is a demanding task and different MHD groups around the world try to achieve it. The main problem lies in the fact that laboratory liquid metals which are used in such experiments are characterized by small magnetic Prandtl number. Consequently rotation rates of the cylinders must be extremely large and vast amount of technical problems emerge. One of the most important difficulties is an influence of plates enclosing the cylinders in any experiment. For fast rotation the plates tend to dominate the whole flow and the MRI can not be observed. In this thesis we discuss a special helical configuration of the applied magnetic field which allows the critical rotation rates to be much smaller. If only the axial magnetic field is present, the cylinders must rotate with angular velocities corresponding to Reynolds numbers of order Re ≈ 10^6. With the helical field this number is dramatically reduced to Re ≈ 10^3. The azimuthal component of the magnetic field can be easily generated by letting an electric current through the axis of rotation, In a Taylor-Couette flow the (primary) instability manifests itself as Taylor vortices. The specific geometry of the helical magnetic field leads to a traveling wave solution and the vortices are drifting in a direction determined by rotation and the magnetic field. In an idealized study for infinitely long cylinders this is not a problem. However, if the cylinders have finite length and are bounded vertically by the plates the situation is different. In this dissertation it is shown, with use of numerical methods, that the traveling wave solution also exists for MHD Taylor-Couette flow at finite aspect ratio H/D, H being height of the cylinders, D width of the gap between them. The nonlinear simulations provide amplitudes of fluid velocity which are helpful in designing an experiment. Although the plates disturb the flow, parameters like the drift velocity indicate that the helical MRI operates in this case. The idea of the helical MRI was implemented in a very recent experiment PROMISE. The results provided, for the first time, an evidence that the (helical) MRI indeed exists. Nevertheless, the influence of the vertical endplates was evident and the experiment can be, in principle, improved. Exemplary methods of reduction of the end-effect are here proposed. Near the vertical boundaries develops an Ekman-Hartmann layer. Study of this layer for the MHD Taylor-Couette system as well as its impact on the global flow properties is presented. It is shown that the plates, especially if they are conducting, can disturb the flow far more then previously thought also for relatively slow rotation rates.
The solar tachocline is a thin transition layer between the solar radiative zone rotating uniformly and the solar convection zone, which has a mainly latitudinal differential rotation profile. This layer has a thickness of less than $0.05R_{\sun}$ and is subject to extreme radial as well as latitudinal shears. Helioseismological estimates put this layer at roughly $0.7R_{\sun}$. The tachocline mostly resides in the sub-adiabatic, non-turbulent radiative interior, except for a small overlap with the convection zone on the top. Many proposed dynamo mechanisms involve strong toroidal magnetic fields in this transition region. The exact mechanisms behind the formation of such a thin layer is still disputed. A very plausible mechanism is the one involving a weak, relic poloidal magnetic field trapped inside the radiative zone, which is responsible for expelling differential rotation outwards. This was first proposed by \citet{RK97}. The present work develops this idea with numerical simulations including additional effects like meridional circulation. It is shown that a relic field of 1~Gauss or smaller would be sufficient to explain the observed thickness of the tachocline. The stability of the solar tachocline is addressed as the next part of the problem. It is shown that the tachocline is stable up to a differential rotation of 52\% in the absence of magnetic fields. This is a new finding as compared to the earlier two dimensional models which estimated the solar differential rotation (about 28\%) to be marginally stable or even unstable. The changed stability limit is attributed to the changed stability criterion of the 3-dimensional model which also involves radial gradients of the angular velocity. In the presence of toroidal magnetic field belts, the lowest non-axisymmetric mode is shown to be the most unstable one for the radiative part of the tachocline. It is estimated that the tachocline would become unstable for toroidal fields exceeding about 100~Gauss. With both formation and stability questions satisfactorily addressed, this work presents the most comprehensive analysis of the physical processes in the solar tachocline to date.
Aim The aim of the present study was to examine young female volleyballers’ body build, physical abilities, technical skills and psychophysiological properties in relation to their performance at competitions. The sample consisted of 46 female volleyballers aged 13-16 years. 49 basic anthropometric measurements were measured and 65 proportions and body composition characteristics were calculated. 9 physical ability tests, 9 volleyball technical skills tests and 21 psychophysiological tests were carried out. The game performance was recorded by the computer program Game. The program enabled to fix the performance of technical elements in case of each player. The computer program Game calculated the index of proficiency in case of each girl for each element. The first control group consisted of 74 female volleyballers aged 13–15 years with whom reduced anthropometry was provided and 28 games were recorded. The second control group consisted of 586 ordinary schoolgirls aged 13–16 years with whom full anthropometry was provided. Results In order to systematize all anthropometric characteristics, we first studied the essence of the anthropometric structure of the body as a whole. It turned out to be a characteristic system where all variables are in significant correlation between one another and where the leading characteristics are height and weight. Therefore we based the classification on the mean height and weight of the whole sample. We formed a 5 class SD classification. There are three classes of concordance between height and weight: small height – small weight, medium height – medium height, big height – big weight. The other two classes were classes of disconcordance between height and weight- pycnomorphs and leptomorphs. We managed to show that gradual increase in height and weight brought about statistically significant increase in length, breadth and depth measurements, circumferences, bone thicknesses and skinfolds. There were also systematic changes in indeces and body composition characteristics. Pycnomorphs and leptomorphs also showed differences specific to their body types in body measurements and body composition. The results of all tests were submitted to basic statistical analysis and all correlations were found between all the tests (volleyball technical skills, psychophysiological abilities, physical abilities), and all basic anthropometric variables (n = 49) and all proportions and body composition characteristics (n = 65). All anthropometric measurements and test results were correlated with the index of proficiency for all elements of the game. The best linear regression models were calculated for predicting proficiency in different elements of the game. We can see that body build and all kind of tests took part in predicting the proficiency of the game. The most essential for performing attack, block and feint were anthropometric and psychophysiological models. The studied complex of body build characteristics and tests results determine the players’ proficiency at competitions, are an important tool for testing the player’s individual development, enable to choose volleyballers from among schoolgirls and represent the whole body constitutional model of a young female volleyballer. Outlook Our outlook for the future is to continue recording of all Estonian championship games with the computer program Game, to continue the players’ anthropometric measuring and psychophysiological testing at competitions and to compile a national register for assessment of development of individual players and teams.
Functional analysis of selected DOF transcription factors in the model plant Arabidopsis thaliana
(2007)
Transcription factors (TFs) are global regulators of gene expression playing essential roles in almost all biological processes, and are therefore of great scientific and biotechnological interest. This project focused on functional characterisation of three DNA-binding-with-one-zinc-finger (DOF) TFs from the genetic model plant Arabidopsis thaliana, namely OBP1, OBP2 and AtDOF4;2. These genes were selected due to severe growth phenotypes conferred upon their constitutive over-expression. To identify biological processes regulated by OBP1, OBP2 and AtDOF4;2 in detail molecular and physiological characterization of transgenic plants with modified levels of OBP1, OBP2 and AtDOF4;2 expression (constitutive and inducible over-expression, RNAi) was performed using both targeted and profiling technologies. Additionally expression patterns of studied TFs and their target genes were analyzed using promoter-GUS lines and publicly available microarray data. Finally selected target genes were confirmed by chromatin immuno-precipitation and electrophoretic-mobility shift assays. This combinatorial approach revealed distinct biological functions of OBP1, OBP2 and AtDOF4;2. Specifically OBP2 controls indole glucosinolate / auxin homeostasis by directly regulating the enzyme at the branch of these pathways; CYP83B1 (Skirycz et al., 2006). Glucosinolates are secondary compounds important for defence against herbivores and pathogens in the plants order Caparales (e.g. Arabidopsis, canola and broccoli) whilst auxin is an essential plant hormone. Hence OBP2 is important for both response to biotic stress and plant growth. Similarly to OBP2 also AtDOF4;2 is involved in the regulation of plant secondary metabolism and affects production of various phenylpropanoid compounds in a tissue and environmental specific manner. It was found that under certain stress conditions AtDOF4;2 negatively regulates flavonoid biosynthetic genes whilst in certain tissues it activates hydroxycinnamic acid production. It was hypothesized that this dual function is most likely related to specific interactions with other proteins; perhaps other TFs (Skirycz et al., 2007). Finally OBP1 regulates both cell proliferation and cell expansion. It was shown that OBP1 controls cell cycle activity by directly targeting the expression of core cell cycle genes (CYCD3;3 and KRP7), other TFs and components of the replication machinery. Evidence for OBP1 mediated activation of cell cycle during embryogenesis and germination will be presented. Additionally and independently on its effects on cell proliferation OBP1 negatively affects cell expansion via reduced expression of cell wall loosening enzymes. Summing up this work provides an important input into our knowledge on DOF TFs function. Future work will concentrate on establishing exact regulatory networks of OBP1, OBP2 and AtDOF4;2 and their possible biotechnological applications.
This PhD thesis presents the spatio-temporal distribution of terrestrial carbon fluxes for the time period of 1982 to 2002 simulated by a combination of the process-based dynamic global vegetation model LPJ and a 21-year time series of global AVHRR-fPAR data (fPAR – fraction of photosynthetically active radiation). Assimilation of the satellite data into the model allows improved simulations of carbon fluxes on global as well as on regional scales. As it is based on observed data and includes agricultural regions, the model combined with satellite data produces more realistic carbon fluxes of net primary production (NPP), soil respiration, carbon released by fire and the net land-atmosphere flux than the potential vegetation model. It also produces a good fit to the interannual variability of the CO2 growth rate. Compared to the original model, the model with satellite data constraint produces generally smaller carbon fluxes than the purely climate-based stand-alone simulation of potential natural vegetation, now comparing better to literature estimates. The lower net fluxes are a result of a combination of several effects: reduction in vegetation cover, consideration of human influence and agricultural areas, an improved seasonality, changes in vegetation distribution and species composition. This study presents a way to assess terrestrial carbon fluxes and elucidates the processes contributing to interannual variability of the terrestrial carbon exchange. Process-based terrestrial modelling and satellite-observed vegetation data are successfully combined to improve estimates of vegetation carbon fluxes and stocks. As net ecosystem exchange is the most interesting and most sensitive factor in carbon cycle modelling and highly uncertain, the presented results complementary contribute to the current knowledge, supporting the understanding of the terrestrial carbon budget.
Characterisation of silica in Equisetum hyemale and its transformation into biomorphous ceramics
(2007)
Equisetum spp. (horsetail / “Schachtelhalm”) is the only surviving genus of the primitive Sphenopsids vascular plants which reached their zenith during the Carboniferous era. It is an herbaceous plant and is distinguished by jointed stems with fused whorl of nodal leaves. The plant has been used for scouring kitchen utensils and polishing wood during the past time due to its high silica encrustations in the epidermis. Equisetum hyemale (scouring rush) can accumulate silica up to 16% dry weight in its tissue, which makes this plant an interesting candidate as a renewable resource of silica for the synthesis of biomorphous ceramics. The thesis comprises a comprehensive experimental study of silica accumulations in E.hyemale using different characterisation techniques at all hierarchical levels. The obtained results shed light on the local distribution, chemical form, crystallinity, and nanostructure of biogenic silica in E.hyemale which were quite unclear until now. Furthermore, isolation of biogenic silica from E.hyemale to obtain high grade mesoporous silica with high purity is investigated. Finally, syntheses of silicon carbide (b-SiC) by a direct thermoconversion process of E.hyemale is attempted, which is a promising material for high performance ceramics. It is found that silica is deposited continuously on the entire epidermal layer with the highest concentration on the knobs. The highest silicon content is at the knob tips (≈ 33%), followed by epidermal flank (≈ 17%), and inner lower knob (≈ 6%), whereas there is almost no silicon found in the interior parts. Raman spectroscopy reveals the presence of at least two silica modifications in E.hyemale. The first type is pure hydrated amorphous silica restricted to the knob tips. The second type is accumulated on the entire continuous outer layer adjacent to the epidermis cell walls. It is lacking silanol groups and is intimately associated with polysaccharides (cellulose, hemicellulose, pectin) and inorganic compounds. Silica deposited in E.hyemale is found to be mostly amorphous with almost negligible amounts of crystalline silica in the form of a-quartz (< 7%). The silica primary particles have a plate-like shape with a thickness of about 2 nm. Pure mesoporous amorphous silica with an open surface area up to 400 m2/g can be obtained from E.hyemale after leaching the plant with HCl to remove the inorganic impurities followed by a calcination treatment. The optimum calcination temperature appears to be around 500°C. Calcination of untreated E.hyemale causes a collapse of the biogenic silica structure which is mainly attributed to the detrimental action of alkali ions present in the native plant. Finally, pure b-SiC with a surface area of about 12 m2/g is obtained upon direct pyrolysis of HCl-treated E.hyemale samples in argon atmosphere. The original structure of native E.hyemale is substantially retained in the biomorphous b-SiC. The results of this thesis lead to a better understanding of the silicification process and allow to draw conclusions about the role of silica in E.hyemale. In particular, a templating role of the plant biopolymers for the synthesis of the nanostructured silica within the plant body can be deduced. Moreover, the high grade ultrafine amorphous silica isolated from E.hyemale promises applications as adsorbent and catalyst support and as silica source for the fabrication of silica-based composites. The synthesis of biomorphous b-SiC from sustainable and low-cost E.hyemale is still in its initial stage. The present thesis demonstrates the principal possibility of carbothermal synthesis of SiC from E.hyemale with the prospect of potential applications, for instance as refractory materials, catalyst supports, or high performance advanced ceramics.
It is desirable to reduce the potential threats that result from the variability of nature, such as droughts or heat waves that lead to food shortage, or the other extreme, floods that lead to severe damage. To prevent such catastrophic events, it is necessary to understand, and to be capable of characterising, nature's variability. Typically one aims to describe the underlying dynamics of geophysical records with differential equations. There are, however, situations where this does not support the objectives, or is not feasible, e.g., when little is known about the system, or it is too complex for the model parameters to be identified. In such situations it is beneficial to regard certain influences as random, and describe them with stochastic processes. In this thesis I focus on such a description with linear stochastic processes of the FARIMA type and concentrate on the detection of long-range dependence. Long-range dependent processes show an algebraic (i.e. slow) decay of the autocorrelation function. Detection of the latter is important with respect to, e.g. trend tests and uncertainty analysis. Aiming to provide a reliable and powerful strategy for the detection of long-range dependence, I suggest a way of addressing the problem which is somewhat different from standard approaches. Commonly used methods are based either on investigating the asymptotic behaviour (e.g., log-periodogram regression), or on finding a suitable potentially long-range dependent model (e.g., FARIMA[p,d,q]) and test the fractional difference parameter d for compatibility with zero. Here, I suggest to rephrase the problem as a model selection task, i.e.comparing the most suitable long-range dependent and the most suitable short-range dependent model. Approaching the task this way requires a) a suitable class of long-range and short-range dependent models along with suitable means for parameter estimation and b) a reliable model selection strategy, capable of discriminating also non-nested models. With the flexible FARIMA model class together with the Whittle estimator the first requirement is fulfilled. Standard model selection strategies, e.g., the likelihood-ratio test, is for a comparison of non-nested models frequently not powerful enough. Thus, I suggest to extend this strategy with a simulation based model selection approach suitable for such a direct comparison. The approach follows the procedure of a statistical test, with the likelihood-ratio as the test statistic. Its distribution is obtained via simulations using the two models under consideration. For two simple models and different parameter values, I investigate the reliability of p-value and power estimates obtained from the simulated distributions. The result turned out to be dependent on the model parameters. However, in many cases the estimates allow an adequate model selection to be established. An important feature of this approach is that it immediately reveals the ability or inability to discriminate between the two models under consideration. Two applications, a trend detection problem in temperature records and an uncertainty analysis for flood return level estimation, accentuate the importance of having reliable methods at hand for the detection of long-range dependence. In the case of trend detection, falsely concluding long-range dependence implies an underestimation of a trend and possibly leads to a delay of measures needed to take in order to counteract the trend. Ignoring long-range dependence, although present, leads to an underestimation of confidence intervals and thus to an unjustified belief in safety, as it is the case for the return level uncertainty analysis. A reliable detection of long-range dependence is thus highly relevant in practical applications. Examples related to extreme value analysis are not limited to hydrological applications. The increased uncertainty of return level estimates is a potentially problem for all records from autocorrelated processes, an interesting examples in this respect is the assessment of the maximum strength of wind gusts, which is important for designing wind turbines. The detection of long-range dependence is also a relevant problem in the exploration of financial market volatility. With rephrasing the detection problem as a model selection task and suggesting refined methods for model comparison, this thesis contributes to the discussion on and development of methods for the detection of long-range dependence.
Microsaccades are an important component of the small eye movements that constitute fixation, the basis of visual perception. The specific function of microsaccades has been a long-standing research problem. Only recently, conclusive evidence emerged, showing that microsaccades aid both visual perception and oculomotor control. The main goal of this thesis was to improve our understanding of the implementation of microsaccade generation within the circuitry of saccade control, an unsolved issue in oculomotor research. We make a case for a model according to which microsaccades and saccades result from mutually dependent motor plans, competing for expression. The model consists of an activation field, coding for fixation at its center and for saccades at peripheral locations; saccade amplitude increases with eccentricity. Activity during fixation spreads to slightly peripheral locations in the field and, thus, may result in the generation of microsaccades. Inhibition of remote and excitation of neighbouring locations govern the dynamics of the field, resulting in a strong competition between fixation and saccade generation. We propose that this common-field model of microsaccade and saccade generation finds a neurophysiological counterpart in the motor map of the superior colliculus (SC), a key brainstem structure involved in the generation of saccades. In a series of five behavioral experiments, we tested implications of the model. Predictions were derived concerning (1) the behavior of microsaccades in a given task (microsaccade rate, amplitude, and direction), (2) the interactions of microsaccades and subsequent saccades, and (3) the relationship between microsaccadic behavior and neurophysiological processes at the level of the SC. The results yielded strong support for the model at all three levels of analysis, suggesting that microsaccade statistics are indicative of the state of the fixation-related part of the SC motor map.
Nowadays, colloidal rods can be synthesized in large amounts. The rods are typically cylindrically and their length ranges from several nanometers to a few micrometers. In solution, systems of colloidal rodlike molecules or aggregates can form liquid-crystalline phases with long-range orientational and spatial order. In the present work, we investigate structure formation and fractionation in systems of rodlike colloids with the help of Monte Carlo simulations in the NPT ensemble. Repulsive interactions can successfully be mimicked by the hard rod model, which has been studied extensively in the past. In many cases, attractive interactions like van der Waals or depletion forces cannot be neglected, however. In the first part of this work, the phase behavior of monodisperse attractive rods is characterized for different interaction strengths. Phase diagrams as a function of rod length and pressure are presented. Most systems of synthesized mesoscopic rods have a polydisperse length distribution as a consequence of the longitudinal growth process of the rods. For many technical and research applications, a rather small polydispersity is desired in order to have well defined material properties. The polydispersity can be reduced by a spatial demixing (fractionation) of long and short rods. Fractionation and structure formation is studied in a tridisperse and a polydisperse bulk suspension of rods. We observe that the resulting structures depend distinctly on the interaction strength. The fractionation in the system is strongly enhanced with increasing interaction strength. Suspensions are typically confined in a container. We also examine the influence of adjacent substrates in systems of tridisperse and polydisperse rod suspensions. Three different substrate types are studied in detail: a planar wall, a corrugated substrate, and a substrate with rectangular cavities. We analyze the fluid structure close to the substrate and substrate controlled fractionation. The spatial arrangement of long and short rods in front of the substrate depends sensitively on the substrate structure and the pressure. Rods with a predefined length are segregated at substrates with rectangular cavities.
Nature has always served as a model for mimicking and inspiration to humans in their efforts to improve their life. Researchers have been inspired by nature to produce biomimetic materials with molecular recognition properties by design rather than evolution. Molecular imprinting is one way to prepare such materials. Such smart materials with new functionalities are at the forefront of the development of a relevant number of ongoing and perspective applications ranging from consumer to space industry. Molecularly imprinted polymers were developed by mimicking the natural enzymes or antibodies that serve as host for binding target molecules. These imprints were used as a recognition element to substitute natural biomolecules in biosensors. The concept behind molecular imprinting is to mold a material (with the desired chemical properties) around individual molecules. Upon removal of the molecular templates, one is left with regions in the molded material that fit the shape of the template molecules. Thus, molecular imprinting results in materials that can selectively bind to molecules of interest. Imprinted materials resulted in applications ranging from chemical separation to bioanalytics. In this work attempts were made particularly in the development of molecularly imprinted polymer based thermometric sensors. The main effort was focused towards the development of an covalently imprinted polymer that would be able to selectively bind fructosyl valine (Fru-Val), the N-terminal constituent of hemoglobin A1c ß-chains. Taking into account the known advantages of imprinted polymers, e.g. robustness, thermal and chemical stability, imprinted materials were successfully used as a recognition element in the sensor. One of the serious problems associated with the development of MIP sensors and which lies in the absence of a generic procedure for the transformation of the polymer-template binding event into a detectable signal has been addressed by developing the "thermometric" approach. In general the developed approach gives a new insight on MIP/Analyte interactions.
This work introduces novel internal and external memory algorithms for computing voxel skeletons of massive voxel objects with complex network-like architecture and for converting these voxel skeletons to piecewise linear geometry, that is triangle meshes and piecewise straight lines. The presented techniques help to tackle the challenge of visualizing and analyzing 3d images of increasing size and complexity, which are becoming more and more important in, for example, biological and medical research. Section 2.3.1 contributes to the theoretical foundations of thinning algorithms with a discussion of homotopic thinning in the grid cell model. The grid cell model explicitly represents a cell complex built of faces, edges, and vertices shared between voxels. A characterization of pairs of cells to be deleted is much simpler than characterizations of simple voxels were before. The grid cell model resolves topologically unclear voxel configurations at junctions and locked voxel configurations causing, for example, interior voxels in sets of non-simple voxels. A general conclusion is that the grid cell model is superior to indecomposable voxels for algorithms that need detailed control of topology. Section 2.3.2 introduces a noise-insensitive measure based on the geodesic distance along the boundary to compute two-dimensional skeletons. The measure is able to retain thin object structures if they are geometrically important while ignoring noise on the object's boundary. This combination of properties is not known of other measures. The measure is also used to guide erosion in a thinning process from the boundary towards lines centered within plate-like structures. Geodesic distance based quantities seem to be well suited to robustly identify one- and two-dimensional skeletons. Chapter 6 applies the method to visualization of bone micro-architecture. Chapter 3 describes a novel geometry generation scheme for representing voxel skeletons, which retracts voxel skeletons to piecewise linear geometry per dual cube. The generated triangle meshes and graphs provide a link to geometry processing and efficient rendering of voxel skeletons. The scheme creates non-closed surfaces with boundaries, which contain fewer triangles than a representation of voxel skeletons using closed surfaces like small cubes or iso-surfaces. A conclusion is that thinking specifically about voxel skeleton configurations instead of generic voxel configurations helps to deal with the topological implications. The geometry generation is one foundation of the applications presented in Chapter 6. Chapter 5 presents a novel external memory algorithm for distance ordered homotopic thinning. The presented method extends known algorithms for computing chamfer distance transformations and thinning to execute I/O-efficiently when input is larger than the available main memory. The applied block-wise decomposition schemes are quite simple. Yet it was necessary to carefully analyze effects of block boundaries to devise globally correct external memory variants of known algorithms. In general, doing so is superior to naive block-wise processing ignoring boundary effects. Chapter 6 applies the algorithms in a novel method based on confocal microscopy for quantitative study of micro-vascular networks in the field of microcirculation.
The need to develop sustainable resource management strategies for semi-arid and arid rangelands is acute as non-adapted grazing strategies lead to irreversible environmental problems such as desertification and associated loss of economic support to society. In such vulnerable ecosystems, successful implementation of sustainable management strategies depends on well-founded under-standing of processes at different scales that underlay the complex system dynamic. There is ample evidence that, in contrast to traditional sectoral approaches, only interdisciplinary research does work for resolving problems in conservation and natural resource management. In this thesis I combined a range of modeling approaches that integrate different disciplines and spatial scales in order to contribute to basic guidelines for sustainable management of semi-arid and arid range-lands. Since water availability and livestock management are seen as most potent determinants for the dynamics of semi-arid and arid ecosystems I focused on (i) the interaction of ecological and hydro-logical processes and (ii) the effect of farming strategies. First, I developed a grid-based and small-scaled model simulating vegetation dynamics and inter-linked hydrological processes. The simulation results suggest that ecohydrological interactions gain importance in rangelands with ascending slope where vegetation cover serves to obstruct run-off and decreases evaporation from the soil. Disturbances like overgrazing influence these positive feedback mechanisms by affecting vegetation cover and composition. In the second part, I present a modeling approach that has the power to transfer and integrate ecological information from the small scale vegetation model to the landscape scale, most relevant for the conservation of biodiversity and sustainable management of natural resources. I combined techniques of stochastic modeling with remotely sensed data and GIS to investigate to which ex-tent spatial interactions, like the movement of surface water by run-off in water limited environments, affect ecosystem functioning at the landscape scale. My simulation experiments show that overgrazing decreases the number of vegetation patches that act as hydrological sinks and run-off increases. The results of both simulation models implicate that different vegetation types should not only be regarded as provider of forage production but also as regulator of ecosystem functioning. Vegetation patches with good cover of perennial vegetation are capable to catch and conserve surface run-off from degraded surrounding areas. Therefore, downstream out of the simulated system is prevented and efficient use of water resources is guaranteed at all times. This consequence also applies to commercial rotational grazing strategies for semi-arid and arid rangelands with ascending slope where non-degraded paddocks act as hydrological sinks. Finally, by the help of an integrated ecological-economic modeling approach, I analyzed the relevance of farmers’ ecological knowledge for longterm functioning of semi-arid and arid grazing systems under current and future climatic conditions. The modeling approach consists of an ecological and an economic module and combines relevant processes on either level. Again, vegetation dynamics and forage productivity is derived by the small-scaled vegetation model. I showed that sustainable management of semi-arid and arid rangelands relies strongly on the farmers’ knowledge on how the ecosystem works. Furthermore, my simulation results indicate that the projected lower annual rainfall due to climate change in combination with non-adapted grazing strategies adds an additional layer of risk to these ecosystems that are already prone to land degradation. All simulation models focus on the most essential factors and ignore specific details. Therefore, even though all simulation models are parameterized for a specific dwarf shrub savanna in arid southern Namibia, the conclusions drawn are applicable for semi-arid and arid rangelands in general.
In nature one commonly finds interacting complex oscillators which by the coupling scheme form small and large networks, e.g. neural networks. Surprisingly, the oscillators can synchronize, still preserving the complex behavior. Synchronization is a fundamental phenomenon in coupled nonlinear oscillators. Synchronization can be enhanced at different levels, that is, the constraints on which the synchronization appears. Those can be in the trajectory amplitude, requiring the amplitudes of both oscillators to be equal, giving place to complete synchronization. Conversely, the constraint could also be in a function of the trajectory, e.g. the phase, giving place to phase synchronization (PS). In this case, one requires the phase difference between both oscillators to be finite for all times, while the trajectory amplitude may be uncorrelated. The study of PS has shown its relevance to important technological problems, e.g. communication, collective behavior in neural networks, pattern formation, Parkinson disease, epilepsy, as well as behavioral activities. It has been reported that it mediates processes of information transmission and collective behavior in neural and active networks and communication processes in the Human brain. In this work, we have pursed a general way to analyze the onset of PS in small and large networks. Firstly, we have analyzed many phase coordinates for compact attractors. We have shown that for a broad class of attractors the PS phenomenon is invariant under the phase definition. Our method enables to state about the existence of phase synchronization in coupled chaotic oscillators without having to measure the phase. This is done by observing the oscillators at special times, and analyzing whether this set of points is localized. We have show that this approach is fruitful to analyze the onset of phase synchronization in chaotic attractors whose phases are not well defined, as well as, in networks of non-identical spiking/bursting neurons connected by chemical synapses. Moreover, we have also related the synchronization and the information transmission through the conditional observations. In particular, we have found that inside a network clusters may appear. These can be used to transmit more than one information, which provides a multi-processing of information. Furthermore, These clusters provide a multichannel communication, that is, one can integrate a large number of neurons into a single communication system, and information can arrive simultaneously at different places of the network.
The interaction between neuronal cells can be identified as the computing mechanism of the brain. Neurons are complex cells that do not operate in isolation, but they are organized in a highly connected network structure. There is experimental evidence that groups of neurons dynamically synchronize their activity and process brain functions at all levels of complexity. A fundamental step to prove this hypothesis is to analyze large sets of single neurons recorded in parallel. Techniques to obtain these data are meanwhile available, but advancements are needed in the pre-processing of the large volumes of acquired data and in data analysis techniques. Major issues include extracting the signal of single neurons from the noisy recordings (referred to as spike sorting) and assessing the significance of the synchrony. This dissertation addresses these issues with two complementary strategies, both founded on the manipulation of point processes under rigorous analytical control. On the one hand I modeled the effect of spike sorting errors on correlated spike trains by corrupting them with realistic failures, and studied the corresponding impact on correlation analysis. The results show that correlations between multiple parallel spike trains are severely affected by spike sorting, especially by erroneously missing spikes. When this happens sorting strategies characterized by classifying only good'' spikes (conservative strategies) lead to less accurate results than tolerant'' strategies. On the other hand, I investigated the effectiveness of methods for assessing significance that create surrogate data by displacing spikes around their original position (referred to as dithering). I provide analytical expressions of the probability of coincidence detection after dithering. The effectiveness of spike dithering in creating surrogate data strongly depends on the dithering method and on the method of counting coincidences. Closed-form expressions and bounds are derived for the case where the dither equals the allowed coincidence interval. This work provides new insights into the methodologies of identifying synchrony in large-scale neuronal recordings, and of assessing its significance.
The predictability problem
(2007)
We try to determine whether it is possible to approximate the subjective Cloze predictability measure with two types of objective measures, semantic and word n-gram measures, based on the statistical properties of text corpora. The semantic measures are constructed either by querying Internet search engines or by applying Latent Semantic Analysis, while the word n-gram measures solely depend on the results of Internet search engines. We also analyse the role of Cloze predictability in the SWIFT eye movement model, and evaluate whether other parameters might be able to take the place of predictability. Our results suggest that a computational model that generates predictability values not only needs to use measures that can determine the relatedness of a word to its context; the presence of measures that assert unrelatedness is just as important. In spite of the fact, however, that we only have similarity measures, we predict that SWIFT should perform just as well when we replace Cloze predictability with our measures.
Our dynamic Sun manifests its activity by different phenomena: from the 11-year cyclic sunspot pattern to the unpredictable and violent explosions in the case of solar flares. During flares, a huge amount of the stored magnetic energy is suddenly released and a substantial part of this energy is carried by the energetic electrons, considered to be the source of the nonthermal radio and X-ray radiation. One of the most important and still open question in solar physics is how the electrons are accelerated up to high energies within (the observed in the radio emission) short time scales. Because the acceleration site is extremely small in spatial extent as well (compared to the solar radius), the electron acceleration is regarded as a local process. The search for localized wave structures in the solar corona that are able to accelerate electrons together with the theoretical and numerical description of the conditions and requirements for this process, is the aim of the dissertation. Two models of electron acceleration in the solar corona are proposed in the dissertation: I. Electron acceleration due to the solar jet interaction with the background coronal plasma (the jet--plasma interaction) A jet is formed when the newly reconnected and highly curved magnetic field lines are relaxed by shooting plasma away from the reconnection site. Such jets, as observed in soft X-rays with the Yohkoh satellite, are spatially and temporally associated with beams of nonthermal electrons (in terms of the so-called type III metric radio bursts) propagating through the corona. A model that attempts to give an explanation for such observational facts is developed here. Initially, the interaction of such jets with the background plasma leads to an (ion-acoustic) instability associated with growing of electrostatic fluctuations in time for certain range of the jet initial velocity. During this process, any test electron that happen to feel this electrostatic wave field is drawn to co-move with the wave, gaining energy from it. When the jet speed has a value greater or lower than the one, required by the instability range, such wave excitation cannot be sustained and the process of electron energization (acceleration and/or heating) ceases. Hence, the electrons can propagate further in the corona and be detected as type III radio burst, for example. II. Electron acceleration due to attached whistler waves in the upstream region of coronal shocks (the electron--whistler--shock interaction) Coronal shocks are also able to accelerate electrons, as observed by the so-called type II metric radio bursts (the radio signature of a shock wave in the corona). From in-situ observations in space, e.g., at shocks related to co-rotating interaction regions, it is known that nonthermal electrons are produced preferably at shocks with attached whistler wave packets in their upstream regions. Motivated by these observations and assuming that the physical processes at shocks are the same in the corona as in the interplanetary medium, a new model of electron acceleration at coronal shocks is presented in the dissertation, where the electrons are accelerated by their interaction with such whistlers. The protons inflowing toward the shock are reflected there by nearly conserving their magnetic moment, so that they get a substantial velocity gain in the case of a quasi-perpendicular shock geometry, i.e, the angle between the shock normal and the upstream magnetic field is in the range 50--80 degrees. The so-accelerated protons are able to excite whistler waves in a certain frequency range in the upstream region. When these whistlers (comprising the localized wave structure in this case) are formed, only the incoming electrons are now able to interact resonantly with them. But only a part of these electrons fulfill the the electron--whistler wave resonance condition. Due to such resonant interaction (i.e., of these electrons with the whistlers), the electrons are accelerated in the electric and magnetic wave field within just several whistler periods. While gaining energy from the whistler wave field, the electrons reach the shock front and, subsequently, a major part of them are reflected back into the upstream region, since the shock accompanied with a jump of the magnetic field acts as a magnetic mirror. Co-moving with the whistlers now, the reflected electrons are out of resonance and hence can propagate undisturbed into the far upstream region, where they are detected in terms of type II metric radio bursts. In summary, the kinetic energy of protons is transfered into electrons by the action of localized wave structures in both cases, i.e., at jets outflowing from the magnetic reconnection site and at shock waves in the corona.
The Andean orogen is the most outstanding example of mountain building caused by the subduction of oceanic below continental lithosphere. The Andes formed by the subduction of the Nazca and Antarctic oceanic plates under the South American continent over at least ~200 million years. Tectonic and climatic conditions vary markedly along this north-south–oriented plate boundary, which thus represents an ideal natural laboratory to study tectonic and climatic segmentation processes and their possible feedbacks. Most of the seismic energy on Earth is released by earthquakes in subduction zones, like the giant 1960, Mw 9.5 event in south-central Chile. However, the segmentation mechanisms of surface deformation during and between these giant events have remained poorly understood. The Andean margin is a key area to study seismotectonic processes because of its along-strike variability under similar plate kinematic boundary conditions. Active deformation has been widely studied in the central part of the Andes, but the south-central sector of the orogen has gathered less research efforts. This study focuses on tectonics at the Neogene and late Quaternary time scales in the Main Cordillera and coastal forearc of the south-central Andes. For both domains I document the existence of previously unrecognized active faults and present estimates of deformation rates and fault kinematics. Furthermore these data are correlated to address fundamental mountain building processes like strain partitioning and large-scale segmentation. In the Main Cordillera domain and at the Neogene timescale, I integrate structural and stratigraphic field observations with published isotopic ages to propose four main phases of coupled styles of tectonics and distribution of volcanism and magmatism. These phases can be related to the geometry and kinematics of plate convergence. At the late Pleistocene timescale, I integrate field observations with lake seismic and bathymetric profiles from the Lago Laja region, located near the Andean drainage divide. These data reveal Holocene extensional faults, which define the Lago Laja fault system. This fault system has no significant strike-slip component, contrasting with the Liquiñe-Ofqui dextral intra-arc system to the south, where Holocene strike-slip markers are ubiquitous. This contrast in structural style along the arc is coincident with a marked change in along-strike fault geometries in the forearc, across the Arauco Peninsula. Thereon I propose that a net gradient in the degree of partitioning of oblique subduction occurs across the Arauco transition zone. To the north, the margin parallel component of oblique convergence is distributed in a wide zone of diffuse deformation, while to the south it is partitioned along an intra-arc, margin-parallel strike-slip fault zone. In the coastal forearc domain and at the Neogene timescale, I integrate structural and stratigraphic data from field observations, industry reflection-seismic profiles and boreholes to emphasize the influence of climate-driven filling of the trench on the mechanics and kinematics of the margin. I show that forearc basins in the 34-45°S segment record Eocene to early Pliocene extension and subsidence followed by ongoing uplift and contraction since the late Pliocene. I interpret the first stage as caused by tectonic erosion due to high plate convergence rates and reduced trench fill. The subsequent stage, in turn, is related to accretion caused by low convergence rates and the rapid increase in trench fill after the onset of Patagonian glaciations and climate-driven exhumation at ~6-5 Ma. On the late Quaternary timescale, I integrate off-shore seismic profiles with the distribution of deformed marine terraces from Isla Santa María, dated by the radiocarbon method, to show that inverted reverse faulting controls the coastal geomorphology and segmentation of surface deformation. There, a cluster of microearthquakes illuminates one of these reverse faults, which presumingly reaches the plate interface. Furthermore, I use accounts of coseismic uplift during the 1835 M>8 earthquake made by Charles Darwin, to propose that this active reverse fault has been mechanically coupled to the megathrust. This has important implications on the assessment of seismic hazards in this, and other similar regions. These results underscore the need to study plate-boundary deformation processes at various temporal and spatial scales and to integrate geomorphologic, structural, stratigraphic, and geophysical data sets in order to understand the present distribution and causes of tectonic segmentation.
Our Solar system contains a large amount of dust, containing valuable information about our close cosmic environment. If created in a planet's system, the particles stay predominantly in its vicinity and can form extended dust envelopes, tori or rings around them. A fascinating example of these complexes are Saturnian rings containing a wide range of particles sizes from house-size objects in the main rings up to micron-sized grains constituting the E ring. Other example are ring systems in general, containing a large fraction of dust or also the putative dust-tori surrounding the planet Mars. The dynamical life'' of such circumplanetary dust populations is the main subject of our study. In this thesis a general model of creation, dynamics and death'' of circumplanetary dust is developed. Endogenic and exogenic processes creating dust at atmosphereless bodies are presented. Then, we describe the main forces influencing the particle dynamics and study dynamical responses induced by stochastic fluctuations. In order to estimate the properties of steady-state population of considered dust complex, the grain mean lifetime as a result of a balance of dust creation, life'' and loss mechanisms is determined. The latter strongly depends on the surrounding environment, the particle properties and its dynamical history. The presented model can be readily applied to study any circumplanetary dust complex. As an example we study dynamics of two dust populations in the Solar system. First we explore the dynamics of particles, ejected from Martian moon Deimos by impacts of micrometeoroids, which should form a putative tori along the orbit of the moon. The long-term influence of indirect component of radiation pressure, the Poynting-Robertson drag gives rise in significant change of torus geometry. Furthermore, the action of radiation pressure on rotating non-spherical dust particles results in stochastic dispersion of initially confined ensemble of particles, which causes decrease of particle number densities and corresponding optical depth of the torus. Second, we investigate the dust dynamics in the vicinity of Saturnian moon Enceladus. During three flybys of the Cassini spacecraft with Enceladus, the on-board dust detector registered a micron-sized dust population around the moon. Surprisingly, the peak of the measured impact rate occurred 1 minute before the closest approach of the spacecraft to the moon. This asymmetry of the measured rate can be associated with locally enhanced dust production near Enceladus south pole. Other Cassini instruments also detected evidence of geophysical activity in the south polar region of the moon: high surface temperature and extended plumes of gas and dust leaving the surface. Comparison of our results with this in situ measurements reveals that the south polar ejecta may provide the dominant source of particles sustaining the Saturn's E ring.
The objective of this thesis is to improve the knowledge of control mechanisms of hydrological induced mass movements. To this end, detailed hydrological process studies and physically-based hydrological modelling were applied. The study site is a hillslope in the Dornbirn Ache valley near Bregenz, Austria. This so called Heumös slope features a deep-seated translational shear zone and surface near creep movements of up to 10 cm a year. The Cretaceous marlstones of the Austrian Helveticum have a high susceptibility for weathering and might form clay-rich cohesive sediments. In addition, glacial and post-glacial processes formed an unstable hillslope. High yearly precipitation depths of about 2100 mm and rainstorms with both high intensities and precipitation depths govern surface and subsurface hydrological processes. Pressure propagation induced in hydrological active areas influences laterally the groundwater reactions of the moving mass. A complex three-dimensional subsurface pressure system is the cause for fast groundwater reactions despite low hydraulic conductivities. To understand hillslope scale variability, hydrotopes representing specific dominating processes were mapped using vegetation association distribution and soil core analysis. Detailed small-scale soil investigations followed to refine the understanding of these hydrotopes. A perceptional model was developed from the hydrotope distribution and was corroborated by these detailed investigations. The moving hillslope is dominated by surface-runoff generation. Infiltration and deep percolation of water is inhibited through clay-rich gleysols; the yearly average soil moisture is close to saturation. Steep slopes adjacent to the moving hillslope are far more active concerning infiltration, preferential flow and groundwater fluctuations. Spring discharge observations at the toe of the steep slopes are in close relation to groundwater table observations on the moving hillslope body. Evidence of pressure propagation from the steep slopes towards the hillslope body is gathered by comparison of dominating structures and processes. The application of the physically-based hydrological model CATFLOW substantiates the idea of pressure propagation as a key process for groundwater reactions and as a possible trigger for movement in the hillslope.
In my dissertation on 'Security Cooperation as a Way to Stop the Spread of Nu-clear Weapons? Nuclear Nonproliferation Policies of the United States towards the Federal Republic of Germany and Israel, 1945-1968', I study the use of security assistance as nonproliferation policy. I use insights of the Structural Realist and the Rational Institutionalist theories of International Relations to explain, respectively, important foreign policy goals and the basic orientation of policies, on the one hand, and the practical workings and effects of security cooperation on states’ behavior, on the other hand. Moreover, I consider the relations of the United States (US) with the two states in light of bargaining theory to explain the level of US ability to press other states to its preferred courses of action. The study is thus a combination of theory proposing and testing and historic description and explanation. It is also policy-relevant as I seek general lessons regarding the use of security cooperation as nonproliferation policy. I show that the US sought to keep the Federal Republic of Germany (FRG) from acquiring nuclear weapons in order to avoid crises with Moscow and threats to the cohesion of NATO. But the US also saw it as necessary to credibly guarantee the security of the FRG and treat it well in order to ensure that it would remain satisfied as an ally and without own nuclear weapons. Through various institutionalized security cooperation schemes, the US succeeded in this – though the FRG did acquire an option to produce nuclear weapons. The US opposed Israel’s nuclear weapon ambitions in turn because of an expectation that Arab states’ reactions could otherwise result in greater tension and risks of escalation and a worse balance-of-power in the area. But as also a US-Israel alliance could have led to stronger Arab-Soviet ties and thus a worse balance-of-power, and as it was not in US in-terest to be tied to Israel’s side in all regional issues, the US was not prepared to guarantee Israel’s security in a formal, credible way like it did in West Germany’s case. The US failed to persuade Israel to forgo producing nuclear weapons but gradually, an opaque nu-clear status combined with US arms sales that helped Israel to maintain a conventional military advantage over Arabs emerged as a solution to Israel’s security strategy. Because of perceptions that Israel and the FRG had also other options than cooperation with the US, and because the US ability to punish them for unwanted action was limited, these states were able to offer resistance when the US pressed its nonproliferation stance on them.
Each organ of a multicellular organism is unique at the level of its tissues and cells. Furthermore, responses to environmental stimuli or developmental signals occur differentially at the single cell or tissue level. This underlines the necessity of precise investigation of the “building block of life” -the individual cell. Although recently large amount of data concerning different aspects of single cell performance was accumulated, our knowledge about development and differentiation of individual cell within specialized tissue are still far from being complete. To get more insight into processes that occur in certain individual cell during its development and differentiation changes in gene expression during life cycle of A. thaliana leaf hair cell (trichome) were explored in this work. After onset of trichome development this cell changes its cell cycle: it starts endoreduplication (a modified cell cycle in which DNA replication continues in the absence of mitosis and cytokinesis). This makes trichomes a suitable model for studying cell cycle regulation, regulation of cell development and differentiation. Cells of interest were sampled by puncturing them with glass microcapillaries. Each sample contained as few as ten single cells. At first time trichomes in initial stage of trichome development were investigated. To allow their sampling they were specifically labelled by green fluorescent protein (GFP). In total three cell types were explored: pavement cells, trichome initials and mature trichomes. Comparison of gene expression profiles of these cells allowed identification of the genes differentially expressed in subsequent stages of trichome development. Bioinformatic analysis of genes preferentially expressed in trichome initials showed their involvement in hormonal, metal, sulphur response and cell-cycle regulation. Expression pattern of three selected candidate genes, involved in hormonal response and early developmental processes was confirmed by independent method. Effects of mutations in these genes on both trichome and plant development as well as on plant metabolism were analysed. As an outcome of this work novel components in the sophisticated machinery of trichome development and cell cycle progression were identified. These factors could integrate hormone stimuli and network interactions between characterized and as yet unknown members of this machinery. I expect findings presented in this work to enhance and complement our current knowledge about cell cycle progression and trichome development, as well as about performance of the individual cell in general.
Giacconi et al. (1962) discovered a diffuse cosmic X-ray background with rocket experiments when they searched for lunar X-ray emission. Later satellite missions found a spectral peak in the cosmic X-ray background at ~30 keV. Imaging X-ray satellites such as ROSAT (1990-1999) were able to resolve up to 80% of the background below 2 keV into single point sources, mainly active galaxies. The cosmic X-ray background is the integration of all accreting super-massive (several million solar masses) black holes in the centre of active galaxies over cosmic time. Synthesis models need further populations of X-ray absorbed active galaxy nuclei (AGN) in order to explain the cosmic X-ray background peak at ~30 keV. Current X-ray missions such as XMM-Newton and Chandra offer the possibility of studying these additional populations. This Ph.D. thesis studies the populations that dominate the X-ray sky. For this purpose the 120 ksec XMM-Newton Marano field survey, named for an earlier optical quasar survey in the southern hemisphere, is analysed. Based on the optical follow-up observations the X-ray sources are spectroscopically classified. Optical and X-ray properties of the different X-ray source populations are studied and differences are derived. The amount of absorption in the X-ray spectra of type II AGN, which are considered as a main contributor to the X-ray background at ~30 keV, is determined. In order to extend the sample size of the rare type II AGN, this study also includes objects from another survey, the XMM-Newton Serendipitous Medium Sample. In addition, the dependence of the absorption in type II AGN with redshift and X-ray luminosity is analysed. We detected 328 X-ray sources in the Marano field. 140 sources were spectroscopically classified. We found 89 type I AGN, 36 type II AGN, 6 galaxies, and 9 stars. AGN, galaxies, and stars are clearly distinguishable by their optical and X-ray properties. Type I and II AGN do not separate clearly. They have a significant overlap in all studied properties. In a few cases the X-ray properties are in contradiction to the observed optical properties for type I and type II AGN. For example we find type II AGN that show evidence for optical absorption but are not absorbed in X-rays. Based on the additional use of near infra-red imaging (K-band), we were able to identify several of the rare type II AGN. The X-ray spectra of type II AGN from the XMM-Newton Marano field survey and the XMM-Newton Serendipitous Medium Sample were analysed. Since most of the sources have only ~40 X-ray counts in the XMM-Newton PN-detector, I carefully studied the fit results of simulated X-ray spectra as a function of fit statistic and binning method. The objects revealed only moderate absorption. In particular, I do not find any Compton-thick sources (absorbed by column densities of NH > 1.5 x 10^24 cm^−2). This gives evidence that type II AGN are not the main contributor of the X-ray background around 30 keV. Although bias effects may occur, type II AGN show no noticeable trend of the amount of absorption with redshift or X-ray luminosity.
In this thesis the interplay between hydrodynamic transport and specific adhesion is theoretically investigated. An important biological motivation for this work is the rolling adhesion of white blood cells experimentally investigated in flow chambers. There, specific adhesion is mediated by weak bonds between complementary molecular building blocks which are either located on the cell surface (receptors) or attached to the bottom plate of the flow chamber (ligands). The model system under consideration is a hard sphere covered with receptors moving above a planar ligand-bearing wall. The motion of the sphere is influenced by a simple shear flow, deterministic forces, and Brownian motion. An algorithm is given that allows to numerically simulate this motion as well as the formation and rupture of bonds between receptors and ligands. The presented algorithm spatially resolves receptors and ligands. This opens up the perspective to apply the results also to flow chamber experiments done with patterned substrates based on modern nanotechnological developments. In the first part the influence of flow rate, as well as of the number and geometry of receptors and ligands, on the probability for initial binding is studied. This is done by determining the mean time that elapses until the first encounter between a receptor and a ligand occurs. It turns out that besides the number of receptors, especially the height by which the receptors are elevated above the surface of the sphere plays an important role. These findings are in good agreement with observations of actual biological systems like white blood cells or malaria-infected red blood cells. Then, the influence of bonds which have formed between receptors and ligands, but easily rupture in response to force, on the motion of the sphere is studied. It is demonstrated that different states of motion-for example rolling-can be distinguished. The appearance of these states depending on important model parameters is then systematically investigated. Furthermore, it is shown by which bond property the ability of cells to stably roll in a large range of applied flow rates is increased. Finally, the model is applied to another biological process, the transport of spherical cargo particles by molecular motors. In analogy to the so far described systems molecular motors can be considered as bonds that are able to actively move. In this part of the thesis the mean distance the cargo particles are transported is determined.
Answer Set Programming (ASP) emerged in the late 1990s as a new logic programming paradigm, having its roots in nonmonotonic reasoning, deductive databases, and logic programming with negation as failure. The basic idea of ASP is to represent a computational problem as a logic program whose answer sets correspond to solutions, and then to use an answer set solver for finding answer sets of the program. ASP is particularly suited for solving NP-complete search problems. Among these, we find applications to product configuration, diagnosis, and graph-theoretical problems, e.g. finding Hamiltonian cycles. On different lines of ASP research, many extensions of the basic formalism have been proposed. The most intensively studied one is the modelling of preferences in ASP. They constitute a natural and effective way of selecting preferred solutions among a plethora of solutions for a problem. For example, preferences have been successfully used for timetabling, auctioning, and product configuration. In this thesis, we concentrate on preferences within answer set programming. Among several formalisms and semantics for preference handling in ASP, we concentrate on ordered logic programs with the underlying D-, W-, and B-semantics. In this setting, preferences are defined among rules of a logic program. They select preferred answer sets among (standard) answer sets of the underlying logic program. Up to now, those preferred answer sets have been computed either via a compilation method or by meta-interpretation. Hence, the question comes up, whether and how preferences can be integrated into an existing ASP solver. To solve this question, we develop an operational graph-based framework for the computation of answer sets of logic programs. Then, we integrate preferences into this operational approach. We empirically observe that our integrative approach performs in most cases better than the compilation method or meta-interpretation. Another research issue in ASP are optimization methods that remove redundancies, as also found in database query optimizers. For these purposes, the rather recently suggested notion of strong equivalence for ASP can be used. If a program is strongly equivalent to a subprogram of itself, then one can always use the subprogram instead of the original program, a technique which serves as an effective optimization method. Up to now, strong equivalence has not been considered for logic programs with preferences. In this thesis, we tackle this issue and generalize the notion of strong equivalence to ordered logic programs. We give necessary and sufficient conditions for the strong equivalence of two ordered logic programs. Furthermore, we provide program transformations for ordered logic programs and show in how far preferences can be simplified. Finally, we present two new applications for preferences within answer set programming. First, we define new procedures for group decision making, which we apply to the problem of scheduling a group meeting. As a second new application, we reconstruct a linguistic problem appearing in German dialects within ASP. Regarding linguistic studies, there is an ongoing debate about how unique the rule systems of language are in human cognition. The reconstruction of grammatical regularities with tools from computer science has consequences for this debate: if grammars can be modelled this way, then they share core properties with other non-linguistic rule systems.
A water quality model for shallow river-lake systems and its application in river basin management
(2007)
This work documents the development and application of a new model for simulating mass transport and turnover in rivers and shallow lakes. The simulation tool called 'TRAM' is intended to complement mesoscale eco-hydrological catchment models in studies on river basin management. TRAM aims at describing the water quality of individual water bodies, using problem- and scale-adequate approaches for representing their hydrological and ecological characteristics. The need for such flexible water quality analysis and prediction tools is expected to further increase during the implementation of the European Water Framework Directive (WFD) as well as in the context of climate change research. The developed simulation tool consists of a transport and a reaction module with the latter being highly flexible with respect to the description of turnover processes in the aquatic environment. Therefore, simulation approaches of different complexity can easily be tested and model formulations can be chosen in consideration of the problem at hand, knowledge of process functioning, and data availability. Consequently, TRAM is suitable for both heavily simplified engineering applications as well as scientific ecosystem studies involving a large number of state variables, interactions, and boundary conditions. TRAM can easily be linked to catchment models off-line and it requires the use of external hydrodynamic simulation software. Parametrization of the model and visualization of simulation results are facilitated by the use of geographical information systems as well as specific pre- and post-processors. TRAM has been developed within the research project 'Management Options for the Havel River Basin' funded by the German Ministry of Education and Research. The project focused on the analysis of different options for reducing the nutrient load of surface waters. It was intended to support the implementation of the WFD in the lowland catchment of the Havel River located in North-East Germany. Within the above-mentioned study TRAM was applied with two goals in mind. In a first step, the model was used for identifying the magnitude as well as spatial and temporal patterns of nitrogen retention and sediment phosphorus release in a 100~km stretch of the highly eutrophic Lower Havel River. From the system analysis, strongly simplified conceptual approaches for modeling N-retention and P-remobilization in the studied river-lake system were obtained. In a second step, the impact of reduced external nutrient loading on the nitrogen and phosphorus concentrations of the Havel River was simulated (scenario analysis) taking into account internal retention/release. The boundary conditions for the scenario analysis such as runoff and nutrient emissions from river basins were computed by project partners using the catchment models SWIM and ArcEGMO-Urban. Based on the output of TRAM, the considered options of emission control could finally be evaluated using a site-specific assessment scale which is compatible with the requirements of the WFD. Uncertainties in the model predictions were also examined. According to simulation results, the target of the WFD -- with respect to total phosphorus concentrations in the Lower Havel River -- could be achieved in the medium-term, if the full potential for reducing point and non-point emissions was tapped. Furthermore, model results suggest that internal phosphorus loading will ease off noticeably until 2015 due to a declining pool of sedimentary mobile phosphate. Mass balance calculations revealed that the lakes of the Lower Havel River are an important nitrogen sink. This natural retention effect contributes significantly to the efforts aimed at reducing the river's nitrogen load. If a sustainable improvement of the river system's water quality is to be achieved, enhanced measures to further reduce the immissions of both phosphorus and nitrogen are required.
The styles of deformation of the fore-arc wedges along the Chilean convergent margin are observed to vary significantly, despite similar plate kinematic conditions. Here, I focus on the analysis of fore-arc deformation on two regions along the Chilean convergent margin at 20°-24°S and 37°-42°S. Although both regions are subjected to the oblique subduction of the oceanic Nazca plate and backstopped by the Andes mountain chain; they display different patterns of deformation. The northern Chilean study area (20° - 24°S) is characterized by an exceptionally thick crust of about 60 km beneath the Altiplano – Puna plateau, lack of an accretionary wedge in the fore-arc due to hyperarid climate, and consequently a sediment starved trench. Two major margin parallel strike slip faults are observed in this area, the Atacama Fault Zone (AFZ) and the Precordilleran Fault System (PFS). Both strike-slip faults do not exhibit significant recent displacement. The southern study area (37° - 42°S), compared to the northern study area, is characterized by lower topography, high precipitation rates (~2000 mm/yr), and a younger subducted oceanic plate. An active strike-slip fault, the Liquiñe-Ofqui-Fault-Zone (LOFZ), shows ~1 cm/yr recent dextral movement and shapes the surface of this area. Thus, the southern Chilean study area exhibits localized strike-slip motion. Within this area the largest earthquake ever recorded, the 1960 Valdivia earthquake, occurred with a moment magnitude of MW=9.5. I have constructed 2D thermal models and 3D mechanical models for both Chilean study areas to study processes related to active subduction. The applied numerical method is the finite element technique by means of the commercial software package ABAQUS. The thermal models are focused on the thermal conditions along the plate interface. The thermal structure along the plate interface reveals the limits of coupling but also the type of transition from coupled to uncoupled and vice versa. The model results show that shear heating at the plate interface is an important mechanism that should be taken into account. The models also show that the thermal condition at the downdip limit of the coupling zone leads to a sharp decrease of friction along the interface. Due to the different geometries of the two Chilean study areas, such as the slab dip and the thickness of the continental crust, the downdip limit of the southern study area is slightly shallower than that of the northern study area. The results of the 2D thermal models are used to constrain the spatial extent of the coupling zone in the 3D mechanical models. 3D numerical simulations are used to investigate how geometry, rheology and mechanical parameters influence strain partitioning and styles of deformation in the Chilean fore-arc. The general outline of the models is based on the fore-arc geometry and boundary conditions as derived from geophysical and geological field data. I examined the influence of different rheological approaches and varying physical properties of the fore-arc to identify and constrain the parameters controlling the difference in surface deformation between the northern and southern study area. The results of numerical studies demonstrate that a small slab dip, a high coefficient of basal friction, a high obliquity of convergence, and a high Young’s modulus favour localisation of deformation in the fore-arc wedge. This parameter study helped me to constrain preferred models for the two Chilean study areas that fit to first order observations. These preferred models explain the difference in styles of deformation as controlled by the angle of obliquity, the dip of subducting slab, and the strength of wedge material. The difference in styles can be even larger if I apply stronger coupling between plates within the southern area; however, several independent observations indicate opposite tendency showing southward decrease of intensity of coupling. The weaker wedge material of the preferred model for the northern study area is associated with advanced development of the adjacent orogen, the Central Andes. Analysis of world-wide examples of oblique subduction zones supports the conclusion that more mature subduction zones demonstrate less pronounced localization of strike-slip motion.
The innovation of information techniques has changed many aspects of our life. In health care field, we can obtain, manage and communicate high-quality large volumetric image data by computer integrated devices, to support medical care. In this dissertation I propose several promising methods that could assist physicians in processing, observing and communicating the image data. They are included in my three research aspects: telemedicine integration, medical image visualization and image segmentation. And these methods are also demonstrated by the demo software that I developed. One of my research point focuses on medical information storage standard in telemedicine, for example DICOM, which is the predominant standard for the storage and communication of medical images. I propose a novel 3D image data storage method, which was lacking in current DICOM standard. I also created a mechanism to make use of the non-standard or private DICOM files. In this thesis I present several rendering techniques on medical image visualization to offer different display manners, both 2D and 3D, for example, cut through data volume in arbitrary degree, rendering the surface shell of the data, and rendering the semi-transparent volume of the data. A hybrid segmentation approach, designed for semi-automated segmentation of radiological image, such as CT, MRI, etc, is proposed in this thesis to get the organ or interested area from the image. This approach takes advantage of the region-based method and boundary-based methods. Three steps compose the hybrid approach: the first step gets coarse segmentation by fuzzy affinity and generates homogeneity operator; the second step divides the image by Voronoi Diagram and reclassifies the regions by the operator to refine segmentation from the previous step; the third step handles vague boundary by level set model. Topics for future research are mentioned in the end, including new supplement for DICOM standard for segmentation information storage, visualization of multimodal image information, and improvement of the segmentation approach to higher dimension.
Being living systems unable to adjust their location to changing environmental conditions, plants display homeostatic networks that have evolved to maintain transition metal levels in a very narrow concentration range in order to avoid either deficiency or toxicity. Hence, plants possess a broad repertoire of mechanisms for the cellular uptake, compartmentation and efflux, as well as for the chelation of transition metal ions. A small number of plants are hypertolerant to one or a few specific transition metals. Some metal tolerant plants are also able to hyperaccumulate metal ions. The Brassicaceae family member Arabidopis halleri ssp. halleri (L.) O´KANE and AL´SHEHBAZ is a hyperaccumulator of zinc (Zn), and it is closely related to the non-hypertolerant and non-hyperaccumulating model plant Arabidopsis thaliana (L.) HEYNHOLD. The close relationship renders A. halleri a promising emerging model plant for the comparative investigation of the molecular mechanisms behind hypertolerance and hyperaccumulation. Among several potential candidate genes that are probably involved in mediating the zinc-hypertolerant and zinc-hyperaccumulating trait is AhHMA3. The AhHMA3 gene is highly similar to AtHMA3 (AGI number: At4g30120) in A. thaliana, and its encoded protein belongs to the P-type IB ATPase family of integral membrane transporter proteins that transport transition metals. In contrast to the low AtHMA3 transcript levels in A. thaliana, the gene was found to be constitutively highly expressed across different Zn treatments in A. halleri, especially in shoots. In this study, the cloning and characterisation of the HMA3 gene and its promoter from Arabidopsis halleri (L.) O´KANE and AL´SHEHBAZ and Arabidopsis thaliana (L.) HEYNHOLD is described. Heterologously expressed AhHMA3 mediated enhanced tolerance to Zn and to a much lesser degree to cadmium (Cd) but not to cobalt (Co) in metal-sensitive mutant strains of budding yeast. It is demonstrated that the genome of A. halleri contains at least four copies of AhHMA3, AhHMA3-1 to AhHMA3-4. A copy-specific real-time RT-PCR indicated that an AhHMA3-1 related gene copy is the source of the constitutively high transcript level in A. halleri and not a gene copy similar to AhHMA3-2 or AhHMA3-4. In accordance with the enhanced AtHMA3mRNA transcript level in A. thaliana roots, an AtHMA3 promoter-GUS gene construct mediated GUS activity predominantly in the vascular tissues of roots and not in shoots. However, the observed AhHMA3-1 and AhHMA3-2 promoter-mediated GUS activity in A. thaliana or A. halleri plants did not reflect the constitutively high expression of AhHMA3 in shoots of A. halleri. It is suggested that other factors e. g. characteristic sequence inserts within the first intron of AhHMA3-1 might enable a constitutively high expression. Moreover, the unknown promoter of the AhHMA3-3 gene copy could be the source of the constitutively high AhHMA3 transcript levels in A. halleri. In that case, the AhHMA3-3 sequence is predicted to be highly homologous to AhHMA3-1. The lack of solid localisation data for the AhHMA3 protein prevents a clear functional assignment. The provided data suggest several possible functions of the AhHMA3 protein: Like AtHMA2 and AtHMA4 it might be localised to the plasma membrane and could contribute to the efficient translocation of Zn from root to shoot and/or to the cell-to-cell distribution of Zn in the shoot. If localised to the vacuolar membrane, then a role in maintaining a low cytoplasmic zinc concentration by vacuolar zinc sequestration is possible. In addition, AhHMA3 might be involved in the delivery of zinc ions to trichomes and mesophyll leaf cells that are major zinc storage sites in A. halleri.
The biological function and the technological applications of semiflexible polymers, such as DNA, actin filaments and carbon nanotubes, strongly depend on their rigidity. Semiflexible polymers are characterized by their persistence length, the definition of which is the subject of the first part of this thesis. Attractive interactions, that arise e.g.~in the adsorption, the condensation and the bundling of filaments, can change the conformation of a semiflexible polymer. The conformation depends on the relative magnitude of the material parameters and can be influenced by them in a systematic manner. In particular, the morphologies of semiflexible polymer rings, such as circular nanotubes or DNA, which are adsorbed onto substrates with three types of structures, are studied: (i) A topographical channel, (ii) a chemically modified stripe and (iii) a periodic pattern of topographical steps. The results are compared with the condensation of rings by attractive interactions. Furthermore, the bundling of two individual actin filaments, whose ends are anchored, is analyzed. This system geometry is shown to provide a systematic and quantitative method to extract the magnitude of the attraction between the filaments from experimentally observable conformations of the filaments.
In the present dissertation paper we study problems related to synchronization phenomena in the presence of noise which unavoidably appears in real systems. One part of the work is aimed at investigation of utilizing delayed feedback to control properties of diverse chaotic dynamic and stochastic systems, with emphasis on the ones determining predisposition to synchronization. Other part deals with a constructive role of noise, i.e. its ability to synchronize identical self-sustained oscillators. First, we demonstrate that the coherence of a noisy or chaotic self-sustained oscillator can be efficiently controlled by the delayed feedback. We develop the analytical theory of this effect, considering noisy systems in the Gaussian approximation. Possible applications of the effect for the synchronization control are also discussed. Second, we consider synchrony of limit cycle systems (in other words, self-sustained oscillators) driven by identical noise. For weak noise and smooth systems we proof the purely synchronizing effect of noise. For slightly different oscillators and/or slightly nonidentical driving, synchrony becomes imperfect, and this subject is also studied. Then, with numerics we show moderate noise to be able to lead to desynchronization of some systems under certain circumstances. For neurons the last effect means “antireliability” (the “reliability” property of neurons is treated to be important from the viewpoint of information transmission functions), and we extend our investigation to neural oscillators which are not always limit cycle ones. Third, we develop a weakly nonlinear theory of the Kuramoto transition (a transition to collective synchrony) in an ensemble of globally coupled oscillators in presence of additional time-delayed coupling terms. We show that a linear delayed feedback not only controls the transition point, but effectively changes the nonlinear terms near the transition. A purely nonlinear delayed coupling does not affect the transition point, but can reduce or enhance the amplitude of collective oscillations.
Atmospheric circulation and the surface mass balance in a regional climate model of Antarctica
(2007)
Understanding the Earth's climate system and particularly climate variability presents one of the most difficult and urgent challenges in science. The Antarctic plays a crucial role in the global climate system, since it is the principal region of radiative energy deficit and atmospheric cooling. An assessment of regional climate model HIRHAM is presented. The simulations are generated with the HIRHAM model, which is modified for Antarctic applications. With a horizontal resolution of 55km, the model has been run for the period 1958-1998 creating long-term simulations from initial and boundary conditions provided by the European Centre for Medium-Range Weather Forecasts (ECMWF) ERA40 re-analysis. The model output is compared with observations from observation stations, upper air data, global atmospheric analyses and satellite data. In comparison with the observations, the evaluation shows that the simulations with the HIRHAM model capture both the large and regional scale circulation features with generally small bias in the modeled variables. On the annual time scale the largest errors in the model simulations are the overestimation total cloud cover and the colder near-surface temperature over the interior of the Antarctic plateau. The low-level temperature inversion as well as low-level wind jet is well captured by the model. The decadal scale processes were studied based on trend calculations. The long-term run was divided into two 20 years parts. The 2m temperature, 500 hPa temperature, MSLP, precipitation and net mass balance trends were calculated for both periods and over 1958 - 1998. During the last two decades the strong surface cooling was observed over the Eastern Antarctica, this result is in good agreement with the result of Chapman and Walsh (2005) who calculated the temperature trend based on the observational data. The MSLP trend reveals a big disparity between the first and second parts of the 40 year run. The overall trend shows the strengthening of the circumpolar vortex and continental anticyclone. The net mass balance as well as precipitation show a positive trend over the Antarctic Peninsula region, along Wilkes Land and in Dronning Maud Land. The Antarctic ice sheet grows over the Eastern part of Antarctica with small exceptions in Dronning Maud Land and Wilkes Land and sinks in the Antarctic Peninsula; this result is in good agreement with the satellite-measured altitude presented in Davis (2005) . To better understand the horizontal structure of MSLP, temperature and net mass balance trends the influence of the Southern Annual Mode (SAM) on the Antarctic climate was investigated. The main meteorological parameters during the positive and negative Antarctic Oscillation (AAO) phases were compared to each other. A positive/negative AAO index means strengthening/weakening of the circumpolar vortex, poleward/northward storm tracks and prevailing/weakening westerly winds. For detailed investigation of global teleconnection, two positive and one negative periods of AAO phase were chosen. The differences in MSLP and 2m temperature between positive and negative AAO years during the winter months partly explain the surface cooling during the last decades.
This thesis describes two main projects; the first one is the optimization of a hierarchical search strategy to search for unknown pulsars. This project is divided into two parts; the first part (and the main part) is the semi-coherent hierarchical optimization strategy. The second part is a coherent hierarchical optimization strategy which can be used in a project like Einstein@Home. In both strategies we have found that the 3-stages search is the optimum strategy to search for unknown pulsars. For the second project we have developed a computer software for a coherent Multi-IFO (Interferometer Observatory) search. To validate our software, we have worked on simulated data as well as hardware injected signals of pulsars in the fourth LIGO science run (S4). While with the current sensitivity of our detectors we do not expect to detect any true Gravitational Wave signals in our data, we can still set upper limits on the strength of the gravitational waves signals. These upper limits, in fact, tell us how weak a signal strength we would detect. We have also used our software to set upper limits on the signal strength of known isolated pulsars using LIGO fifth science run (S5) data.
Numerous recent publications on the psychological meaning of “if” have proposed a probabilistic interpretation of conditional sentences. According to the proponents of probabilistic approaches, sentences like “If the weather is nice, I will be at the beach tomorrow” (or “If p, then q” in the abstract version) express a high probability of the consequent (being at the beach), given the antecedent (nice weather). When people evaluate conditional sentences, they assumingly do so by deriving the conditional probability P(q|p) using a procedure called the Ramsey test. This is a contradicting view to the hitherto dominant Mental Model Theory (MMT, Johnson-Laird, 1983), that proposes conditional sentences refer to possibilities in the world that are represented in form of mental models. Whereas probabilistic approaches gained a lot of momentum in explaining the interpretation of conditionals, there is still no conclusive probabilistic account of conditional reasoning. This thesis investigates the potential of a comprehensive probabilistic account on conditionals that covers the interpretation of conditionals as well as conclusion drawn from these conditionals when used as a premise in an inference task. The first empirical chapter of this thesis, Chapter 2, implements a further investigation of the interpretation of conditionals. A plain version of the Ramsey test as proposed by Evans and Over (2004) was tested against a similarity sensitive version of the Ramsey test (Oberauer, 2006) in two experiments using variants of the probabilistic truth table task (Experiments 2.1 and 2.2). When it comes to decide whether an instance is relevant for the evaluation of a conditional, similarity seems to play a minor role. Once the decision about relevance is made, believability judgments of the conditional seem to be unaffected by the similarity manipulation and judgments are based on frequency of instances, in the way predicted by the plain Ramsey test. In Chapter 3 contradicting predictions of the probabilistic approaches on conditional reasoning of Verschueren et al (2005), Evans and Over (2004) and Oaksford & Chater (2001) are tested against each other. Results from the probabilistic truth table task modified for inference tasks supports the account of Oaksford and Chater (Experiment 3.1). A learning version of the task and a design with every day conditionals yielded results unpredicted by any of the theories (Experiments 3.2-3.4). Based on these results, a new probabilistic 2-stage model of conditional reasoning is proposed. To preclude claims that the use of the probabilistic truth table task (or variants thereof) favors judgments reflecting conditional probabilities, Chapter 4 combines methodologies used by proponents of the MMT with the probabilistic truth table task. In three Experiments (4.1 -4.3) it could be shown for believability judgments of the conditional and inferences drawn from it, that causal information about counterexamples only prevails, when no frequencies of exceptional cases are present. Experiment 4.4 extends these findings to every day conditionals. A probabilistic estimation process based on frequency information is used to explain results on all tasks. The findings confirm with a probabilistic approach on conditionals and moreover constitute an explanatory challenge for the MMT. In conclusion of all the evidence gathered in this dissertation it seems justified to draw the picture of a comprehensive probabilistic view on conditionals quite optimistically. Probability estimates not only explain the believability people assign to a conditional sentence, they also explain to what extend people are willing to draw conclusions from those sentences.
Phototropic microalgae have a large potential for producing valuable substances for the feed, food, cosmetics, pigment, bioremediation, and pharmacy industries as well as for biotechnological processes. Today it is estimated that the microalgal aquaculture worldwide production is 5000 tons of dry matter per year (not taking into account processed products) making it an approximately $1.25 billion U.S. per year industry. In this work, several spectroscopic techniques were utilized for the investigation of microalgae cells. Specifically, photondensity wave spectroscopy was applied as a technique for the on-line observation of the culture. For effective evaluation of the photosynthetic growth processes, fast and non-invasive sensor systems that analyze the relevant biological and technical process parameters are preferred. Traditionally, the biomass in a photobioreactor is quantified with the help of turbidimetry measurements, which require extensive calibration. Another problem frequently encountered when using spectral analysis for investigating solutions is that samples of interest are often undiluted and highly scattering and do not adhere to Beer-Lambert's law. Due to the fluorescence properties of chlorophyll, fluorescence spectroscopy techniques including fluorescence lifetime imaging and single photon counting could be applied to provide images of the cells as well as determine the effects of excitation intensity on the fluorescence lifetime, which is an indicator of the condition of the cell. A photon density wave is a sinusoidally intensity-modulated optical wave stemming from a point-source of light, which propagates through diffuse medium and exhibits amplitude and phase variations. Light propagation though strongly scattering media can be described by the P1 approximation to the Boltzmann transport equation. Photon density wave spectroscopy enables the ability to differentiate between scattered and absorbed light, which is desired so that an independent determination of the reduced scattering and absorption coefficients can be made. The absorption coefficient is related to the pigment content in the cells, and the reduced scattering coefficient can be used to characterize physical and morphological properties of the medium and was here applied for the determination of the average cell size.
Electron transfer phenomena in proteins represent one of the most common types of biochemical reactions. They play a central role in energy conversion pathways in living cells, and are crucial components in respiration and photosynthesis. These complex biochemical reaction cascades consist of a series of proteins and protein complexes that couple a charge transfer to different forms of chemical energy. The efficiency and sophisticated optimisation of signal transfer in these natural redox chains has inspired engineering of artificial architectures mimicking essential properties of their natural analogues. Implementation of direct electron transfer (DET) in protein assemblies was a breakthrough in bioelectronics, providing a simple and efficient way for coupling biological recognition events to a signal transducer. DET avoids the use of redox mediators, reducing potential interferences and side reactions, as well as being more compatible with in vivo conditions. However, only a few haem proteins, including the redox protein cytochrome c (cyt.c), and blue copper enzymes show efficient DET on different kinds of electrodes. Previous investigations with cyt.c have mainly focused on heterogeneous electron transfer of monolayers of this protein on gold. An important advance was the fabrication of cyt.c multilayers by electrostatic layer-by-layer self-assembly. The ease of fabrication, the stability, and the controllable permeability of polyelectrolyte multilayers have made them particularly attractive for electroanalytical applications. With cyt.c and sulfonated polyaniline it was for the first time possible that fully electro-active multilayers of the redox protein could be prepared. This approach was extended to design an analytical signal chain based on multilayers of cyt.c and xanthine oxidase (XOD). The system does not need an external mediator but relies on an in situ generation of a mediating radical and thus allows a signal transfer from hypoxanthine via the substrate converting enzyme and cyt.c to the electrode. Another kind of a signal chain is based on assembling proteins in complexes on electrodes in such a way that a direct protein-protein electron transfer becomes feasible. This design does not need a redox mediator in analogy to natural protein communication. For this purpose, cyt.c and the enzyme bilirubin oxidase (BOD, EC 1.3.3.5) are co-immobilized in a self-assembled polyelectrolyte multilayer on gold electrodes. Although these two proteins are not natural reaction partners, the protein architecture facilitates an electron transfer from the electrode via multiple protein layers to molecular oxygen resulting in a significant catalytic reduction current. Finally, we describe a novel strategy for multi-protein layer-by-layer self-assembly combining cyt.c with an enzyme sulfite oxidase (SOx) without use of any additional polymer. Electrostatic interactions between these two proteins with rather separated pI values during the assembly process from a low ionic strength buffer were found sufficient for the layer-by-layer deposition of the both biomolecules. It is anticipated that the concepts described in this work will stimulate further progress in multilayer design of even more complex biomimetic signal cascades taking advantage of direct communication between proteins.
In this work the concept of 'context' is considered in five main points. First, context is seen as always necessary for an adequate explication of the concepts of meaning and understanding. Context always plays a role and is not merely brought into consideration when handling a special class of statements or terms, or when there is doubt and clarification is necessary. Second, context cannot be completely reduced to some system of representation. The reason for this is the presence of humans, which is always an important component of a context. Humans experience situations in ways that are not always reducible to symbolic representation. Third, contexts are in principle open. In normal cases they cannot be determined or described in advance. A context is not to be equated with a set of information. Fourth, we understand the parameters of a context pragmatically, which is why we are not led into doubt or even to meaning skepticism by the open nature of a context. This pragmatic knowledge belongs to the category of an ability. Fifth, contexts are, in principle, accessible. This denies the idea that some contexts are incommensurable. There are a number of pragmatic ways of accessing unfamiliar contexts. Some of these are here examined in light of the so-called 'culture wars' in the U.S.A.
In this thesis we mainly generalize two theorems from Mackaay-Picken and Picken (2002, 2004). In the first paper, Mackaay and Picken show that there is a bijective correspondence between Deligne 2-classes $\xi \in \check{H}^2(M,\mathcal{D}^2)$ and holonomy maps from the second thin-homotopy group $\pi_2^2(M)$ to $U(1)$. In the second one, a generalization of this theorem to manifolds with boundaries is given: Picken shows that there is a bijection between Deligne 2-cocycles and a certain variant of 2-dimensional topological quantum field theories. In this thesis we show that these two theorems hold in every dimension. We consider first the holonomy case, and by using simplicial methods we can prove that the group of smooth Deligne $d$-classes is isomorphic to the group of smooth holonomy maps from the $d^{th}$ thin-homotopy group $\pi_d^d(M)$ to $U(1)$, if $M$ is $(d-1)$-connected. We contrast this with a result of Gajer (1999). Gajer showed that Deligne $d$-classes can be reconstructed by a different class of holonomy maps, which not only include holonomies along spheres, but also along general $d$-manifolds in $M$. This approach does not require the manifold $M$ to be $(d-1)$-connected. We show that in the case of flat Deligne $d$-classes, our result differs from Gajers, if $M$ is not $(d-1)$-connected, but only $(d-2)$-connected. Stiefel manifolds do have this property, and if one applies our theorem to these and compare the result with that of Gajers theorem, it is revealed that our theorem reconstructs too many Deligne classes. This means, that our reconstruction theorem cannot live without the extra assumption on the manifold $M$, that is our reconstruction needs less informations about the holonomy of $d$-manifolds in $M$ at the price of assuming $M$ to be $(d-1)$-connected. We continue to show, that also the second theorem can be generalized: By introducing the concept of Picken-type topological quantum field theory in arbitrary dimensions, we can show that every Deligne $d$-cocycle induces such a $d$-dimensional field theory with two special properties, namely thin-invariance and smoothness. We show that any $d$-dimensional topological quantum field theory with these two properties gives rise to a Deligne $d$-cocycle and verify that this construction is surjective and injective, that is both groups are isomorphic.
The major aim of this thesis was to study the effect of nitrate on primary metabolism and in development of the model plant Arabidopsis thaliana. The present work has two separate topics. First, to investigate the GDH family, a small gene family at the interface between nitrogen and carbon metabolisms. Second, to investigate the mechanisms whereby nitrogen is regulating the transition to flowering time in Arabidopsis thaliana. To gain more insights into the regulation of primary metabolism by the functional characterization of the glutamate dehydrogenase (GDH) family, an enzyme putatively involved in the metabolism of amino acids and thus suggested to play different and essential roles in carbon and nitrogen metabolism in plants, knock out mutants and transgenic plants carrying RNA interference construct were generated and characterized. The effect of silencing GDH on carbon and nitrogen metabolisms was investigated, especially the level of carbohydrates and the amino acid pool were further analysed. It has been shown that GDH expression is regulated by light and/or sugar status therefore, phenotypic and metabolic analysis were developed in plants grown at different points of the diurnal rhythm and in response to an extended night period. In addition, we are interested in the effect of nutrient availability in the transition from vegetative growth to flowering and especially in nitrate as a metabolite that triggers widespread and coordinated changes in metabolism and development. Nutrient availability has a dramatic effect on flowering time, with a marked delay of flowering when nitrate is supplied (Stitt, 1999). The use of different mutants and transgenic plants impaired in flowering signalling pathways was crucial to evaluate the impact of different nitrate concentrations on flowering time and to better understand the interaction of nitrate-dependent signals with other main flowering signalling pathways. Plants were grown on glutamine as a constitutive source of nitrogen, and the nitrate supply varied. Low nitrate led to earlier flowering. The response to nitrate is accentuated in short days and in the CONSTANS deficient co2 mutant, whereas long days or overexpression of CONSTANS overrides the nitrate response. These results indicate that nitrates acts downstream of the known flowering signalling pathways for photoperiod, autonomy, vernalization and gibberellic acid. Global analyses of gene expression of two independent flowering systems, a light impaired mutant (co2tt4) and a constitutive over-expresser of the potent repressor of flowering (35S::FLC), were to be investigated under two different concentrations of nitrate in order to identify candidate genes that may be involved in the regulation of flowering time by nitrate.
Sulphur, a macronutrient essential for plant growth, is among the most versatile elements in living organisms. Unfortunately, little is known about regulation of sulphate uptake and assimilation by plants. Identification of sulphate signalling processes will allow to control sulphate acquisition and assimilation and may prove useful in the future to improve sulphur-use efficiency in agriculture. Many of genes involved in sulphate metabolism are regulated on transcriptional level by products of other genes called transcription factors (TF). Several published experiments revealed TF genes that respond to sulphate deprivation, but none of these have been so far been characterized functionally. Thus, we aimed at identifying and characterising transcription factors that control sulphate metabolism in the model plant Arabidopsis thaliana. To achieve that goal we postulated that factors regulating Arabidopsis responses to inorganic sulphate deficiency change their transcriptional levels under sulphur-limited conditions. By comparing TF transcript profiles from plants grown on different sulphate regimes, we identified TF genes that may specifically induce or repress changes in expression of genes that allow plants to adapt to changes in sulphate availability. Candidate genes obtained from this screening were tested by reverse genetics approaches. Transgenic plants constitutively overproducing selected TF genes and mutant plants, lacking functional selected TF genes (knock out), were used. By comparing metabolite and transcript profiles from transgenic and wild type plants we aimed at confirming the role of selected AP2 TF candidate genes in plant adaptation to sulphur unavailability. After preliminary characterisation of WRKY24 and MYB93 TF genes, we postulate that these factors are involved in a complex multifactorial regulatory network, in which WRKY24 and MYB93 would act as superior factors regulating other transcription factors directly involved in the regulation of S-metabolism genes. Results obtained for plants overproducing TOE1 and TOE2 TF genes suggests that these factors may be involved in a mechanism, which is promoting synthesis of an essential amino acid, methionine, over synthesis of another amino acid, cysteine. Thus, TOE1 and TOE2 genes might be a part of transcriptional regulation of methionine synthesis. Approaches creating genetically manipulated plants may produce plant phenotypes of immediate biotechnological interest, such as plants with increased sulphate or sulphate-containing amino acid content, or better adapted to the sulphate unavailability.
Exploring elections features from a geographical perspective is the focus of this study. Its primary objective is to develop a scientific approach based on geoinformation technology (GIT) that promotes deeper understanding how geographical settings affect the spatial and temporal variations of voting behaviour and election outcomes. For this purpose, the five parliamentary elections (1991-2005) following the political turnaround in 1990 in the South East European reform country Albania have been selected as a case study. Elections, like other social phenomena that do not develop uniformly over a territory, inherit a spatial dimension. Despite of fact that elections have been researched by various scientific disciplines ranging from political science to geography, studies that incorporate their spatial dimension are still limited in number and approaches. Consequently, the methodologies needed to generate an integrated knowledge on many facets that constitute election features are lacking. This study addresses characteristics and interactions of the essential elements involved in an election process. Thus, the baseline of the approach presented here is the exploration of relations between three entities: electorate (political and sociodemographic features), election process (electoral system and code) and place (environment where voters reside). To express this interaction the concept of electoral pattern is introduced. Electoral patterns are defined by the study as the final view of election results, chiefly in tabular and/or map form, generated by the complex interaction of social, economic, juridical, and spatial features of the electorate, which has occurred at a specific time and in a particular geographical location. GIT methods of geoanalysis and geovisualization are used to investigate the characteristics of electoral patterns in their spatial and temporal distribution. Aggregate-level data modelled in map form were used to analyse and visualize the spatial distribution of election patterns components and relations. The spatial dimension of the study is addressed in the following three main relations: One, the relation between place and electorate and its expression through the social, demographic and economic features of the electorate resulting in the profile of the electorate’s context; second, the electorate-election interaction which forms the baseline to explore the perspective of local contextual effects in voting behaviour and election results; third, the relation between geographical location and election outcomes reflecting the implication of determining constituency boundaries on election results. To address the above relations, three types of variables: geo, independent and dependent, have been elaborated and two models have been created. The Data Model, developed in a GIS environment, facilitates structuring of election data in order to perform spatial analysis. The peculiarity of electoral patterns – a multidimensional array that contains information on three variables, stored in data layers of dissimilar spatial units of reference and scales of value measurement – prohibit spatial analysis based on the original source data. To perform a joint spatial analysis it is therefore mandatory to restructure the spatial units of reference while preserving their semantic content. In this operation, all relevant electoral as well as socio-demographic data referenced to different administrative spatial entities are re-referenced to uniform grid cells as virtual spatial units of reference. Depending on the scale of data acquisition and map presentation, a cell width of 0.5 km has been determined. The resulting fine grid forms the basis of subsequent data analyses and correlations. Conversion of the original vector data layers into target raster layers allows for unification of spatial units, at the same time retaining the existing level of detail of the data (variables, uniform distribution over space). This in turn facilitates the integration of the variables studied and the performance of GIS-based spatial analysis. In addition, conversion to raster format makes it possible to assign new values to the original data, which are based on a common scale eliminating existing differences in scale of measurement. Raster format operations of the type described are well-established data analysis techniques in GIT, yet they have rarely been employed to process and analyse electoral data. The Geovisualization Model, developed in a cartographic environment, complements the Data Model. As an analog graphic model it facilitates efficient communication and exploration of geographical information through cartographic visualization. Based on this model, 52 choropleth maps have been generated. They represent the outcome of the GIS-based electoral data analysis. The analog map form allows for in-depth visual analysis and interpretation of the distribution and correlation of the electoral data studied. For researchers, decision makers and a wider public the maps provide easy-to-access information on and promote easy-to-understand insight into the spatial dimension, regional variation and resulting structures of the electoral patterns defined.