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Following excited-state chemical shifts in molecular ultrafast x-ray photoelectron spectroscopy
(2022)
The conversion of photon energy into other energetic forms in molecules is accompanied by charge moving on ultrafast timescales. We directly observe the charge motion at a specific site in an electronically excited molecule using time-resolved x-ray photoelectron spectroscopy (TR-XPS). We extend the concept of static chemical shift from conventional XPS by the excited-state chemical shift (ESCS), which is connected to the charge in the framework of a potential model. This allows us to invert TR-XPS spectra to the dynamic charge at a specific atom. We demonstrate the power of TR-XPS by using sulphur 2p-core-electron-emission probing to study the UV-excited dynamics of 2-thiouracil. The method allows us to discover that a major part of the population relaxes to the molecular ground state within 220–250 fs. In addition, a 250-fs oscillation, visible in the kinetic energy of the TR-XPS, reveals a coherent exchange of population among electronic states.
The aim of this work is the study of silica Arrayed Waveguide Gratings (AWGs) in the context of applications in astronomy. The specific focus lies on the investigation of the feasibility and technology limits of customized silica AWG devices for high resolution near-infrared spectroscopy. In a series of theoretical and experimental studies, AWG devices of varying geometry, foot-print and spectral resolution are constructed, simulated using a combination of a numerical beam propagation method and Fraunhofer diffraction and fabricated devices are characterized with respect to transmission efficiency, spectral resolution and polarization sensitivity. The impact of effective index non-uniformities on the performance of high-resolution AWG devices is studied numerically. Characterization results of fabricated devices are used to extrapolate the technology limits of the silica platform. The important issues of waveguide birefringence and defocus aberration are discussed theoretically and addressed experimentally by selection of an appropriate aberration-minimizing anastigmatic AWG layout structure. The drawbacks of the anastigmatic AWG geometry are discussed theoretically. From the results of the experimental studies, it is concluded that fabrication-related phase errors and waveguide birefringence are the primary limiting factors for the growth of AWG spectral resolution. It is shown that, without post-processing, the spectral resolving power is phase-error-limited to R < 40, 000 and, in the case of unpolarized light, birefringence-limited to R < 30, 000 in the AWG devices presented in this work. Necessary measures, such as special waveguide geometries and post-fabrication phase error correction are proposed for future designs. The elimination of defocus aberration using an anastigmatic AWG geometry is successfully demonstrated in experiment. Finally, a novel, non-planar dispersive in-fibre waveguide structure is proposed, discussed and studied theoretically.
In this thesis, I present my contributions to the field of ultrafast molecular spectroscopy. Using the molecule 2-thiouracil as an example, I use ultrashort x-ray pulses from free- electron lasers to study the relaxation dynamics of gas-phase molecular samples. Taking advantage of the x-ray typical element- and site-selectivity, I investigate the charge flow and geometrical changes in the excited states of 2-thiouracil.
In order to understand the photoinduced dynamics of molecules, knowledge about the ground-state structure and the relaxation after photoexcitation is crucial. Therefore, a part of this thesis covers the electronic ground-state spectroscopy of mainly 2-thiouracil to provide the basis for the time-resolved experiments. Many of the previously published studies that focused on the gas-phase time-resolved dynamics of thionated uracils after UV excitation relied on information from solution phase spectroscopy to determine the excitation energies. This is not an optimal strategy as solvents alter the absorption spec- trum and, hence, there is no guarantee that liquid-phase spectra resemble the gas-phase spectra. Therefore, I measured the UV-absorption spectra of all three thionated uracils to provide a gas-phase reference and, in combination with calculations, we determined the excited states involved in the transitions.
In contrast to the UV absorption, the literature on the x-ray spectroscopy of thionated uracil is sparse. Thus, we measured static photoelectron, Auger-Meitner and x-ray absorption spectra on the sulfur L edge before or parallel to the time-resolved experiments we performed at FLASH (DESY, Hamburg). In addition, (so far unpublished) measurements were performed at the synchrotron SOLEIL (France) which have been included in this thesis and show the spin-orbit splitting of the S 2p photoline and its satellite which was not observed at the free-electron laser.
The relaxation of 2-thiouracil has been studied extensively in recent years with ultrafast visible and ultraviolet methods showing the ultrafast nature of the molecular process after photoexcitation. Ultrafast spectroscopy probing the core-level electrons provides a complementary approach to common optical ultrafast techniques. The method inherits its local sensitivity from the strongly localised core electrons. The core energies and core-valence transitions are strongly affected by local valence charge and geometry changes, and past studies have utilised this sensitivity to investigate the molecular process reflected by the ultrafast dynamics. We have built an apparatus that provides the requirements to perform time-resolved x-ray spectroscopy on molecules in the gas phase. With the apparatus, we performed UV-pump x-ray-probe electron spectroscopy on the S 2p edge of 2-thiouracil using the free-electron laser FLASH2. While the UV triggers the relaxation dynamics, the x-ray probes the single sulfur atom inside the molecule. I implemented photoline self-referencing for the photoelectron spectral analysis. This minimises the spectral jitter of the FEL, which is due to the underlying self-amplified spontaneous emission (SASE) process. With this approach, we were not only able to study dynamical changes in the binding energy of the electrons but also to detect an oscillatory behaviour in the shift of the observed photoline, which we associate with non-adiabatic dynamics involving several electronic states. Moreover, we were able to link the UV-induced shift in binding energy to the local charge flow at the sulfur which is directly connected to the electronic state. Furthermore, the analysis of the Auger-Meitner electrons shows that energy shifts observed at early stages of the photoinduced relaxation are related to the geometry change in the molecule. More specifically, the observed increase in kinetic energy of the Auger-Meitner electrons correlates with a previously predicted C=S bond stretch.
Anomalous diffusion or, more generally, anomalous transport, with nonlinear dependence of the mean-squared displacement on the measurement time, is ubiquitous in nature. It has been observed in processes ranging from microscopic movement of molecules to macroscopic, large-scale paths of migrating birds. Using data from multiple empirical systems, spanning 12 orders of magnitude in length and 8 orders of magnitude in time, we employ a method to detect the individual underlying origins of anomalous diffusion and transport in the data. This method decomposes anomalous transport into three primary effects: long-range correlations (“Joseph effect”), fat-tailed probability density of increments (“Noah effect”), and nonstationarity (“Moses effect”). We show that such a decomposition of real-life data allows us to infer nontrivial behavioral predictions and to resolve open questions in the fields of single-particle tracking in living cells and movement ecology.
Anomalous diffusion or, more generally, anomalous transport, with nonlinear dependence of the mean-squared displacement on the measurement time, is ubiquitous in nature. It has been observed in processes ranging from microscopic movement of molecules to macroscopic, large-scale paths of migrating birds. Using data from multiple empirical systems, spanning 12 orders of magnitude in length and 8 orders of magnitude in time, we employ a method to detect the individual underlying origins of anomalous diffusion and transport in the data. This method decomposes anomalous transport into three primary effects: long-range correlations (“Joseph effect”), fat-tailed probability density of increments (“Noah effect”), and nonstationarity (“Moses effect”). We show that such a decomposition of real-life data allows us to infer nontrivial behavioral predictions and to resolve open questions in the fields of single-particle tracking in living cells and movement ecology.
In this paper, the phenomenon of light-driven diffusioosmotic (DO) long-range attractive and repulsive interactions between micro-sized objects trapped near a solid wall is investigated. The range of the DO flow extends several times the size of microparticles and can be adjusted to point towards or away from the particle by varying irradiation parameters such as intensity or wavelength of light. The "fuel" of the light-driven DO flow is a photosensitive surfactant which can be photo-isomerized between trans and cis-states. The trans-isomer tends to accumulate at the interface, while the cis-isomer prefers to stay in solution. In combination with a dissimilar photo-isomerization rate at the interface and in bulk, this yields a concentration gradient of the isomers around single particles resulting in local light-driven diffusioosmotic (l-LDDO) flow. Here, the extended analysis of the l-LDDO flow as a function of irradiation parameters by introducing time-dependent development of the concentration excess of isomers near the particle surface is presented. It is also demonstrated that the l-LDDO can be generated at any solid/liquid interface being more pronounced in the case of strongly absorbing material. This phenomenon has plenty of potential applications since it makes any type of surface act as a micropump.
The random nature of self-amplified spontaneous emission (SASE) is a well-known challenge for x-ray core level spectroscopy at SASE free-electron lasers (FELs). Especially in time-resolved experiments that require a combination of good temporal and spectral resolution the jitter and drifts in the spectral characteristics, relative arrival time as well as power fluctuations can smear out spectral-temporal features. We present a combination of methods for the analysis of time-resolved photoelectron spectra based on power and time corrections as well as self-referencing of a strong photoelectron line. Based on sulfur 2p photoelectron spectra of 2-thiouracil taken at the SASE FEL FLASH2, we show that it is possible to correct for some of the photon energy drift and jitter even when reliable shot-to-shot photon energy data is not available. The quality of pump-probe difference spectra improves as random jumps in energy between delay points reduce significantly. The data analysis allows to identify coherent oscillations of 1 eV shift on the mean photoelectron line of 4 eV width with an error of less than 0.1 eV.
Isoflux tension propagation (IFTP) theory and Langevin dynamics (LD) simulations are employed to study the dynamics of channel-driven polymer translocation in which a polymer translocates into a narrow channel and the monomers in the channel experience a driving force fc. In the high driving force limit, regardless of the channel width, IFTP theory predicts τ ∝ f βc for the translocation time, where β = −1 is the force scaling exponent. Moreover, LD data show that for a very narrow channel fitting only a single file of monomers, the entropic force due to the subchain inside the channel does not play a significant role in the translocation dynamics and the force exponent β = −1 regardless of the force magnitude. As the channel width increases the number of possible spatial configurations of the subchain inside the channel becomes significant and the resulting entropic force causes the force exponent to drop below unity.
Isoflux tension propagation (IFTP) theory and Langevin dynamics (LD) simulations are employed to study the dynamics of channel-driven polymer translocation in which a polymer translocates into a narrow channel and the monomers in the channel experience a driving force fc. In the high driving force limit, regardless of the channel width, IFTP theory predicts τ ∝ f βc for the translocation time, where β = −1 is the force scaling exponent. Moreover, LD data show that for a very narrow channel fitting only a single file of monomers, the entropic force due to the subchain inside the channel does not play a significant role in the translocation dynamics and the force exponent β = −1 regardless of the force magnitude. As the channel width increases the number of possible spatial configurations of the subchain inside the channel becomes significant and the resulting entropic force causes the force exponent to drop below unity.
We consider a one-dimensional oscillatory medium with a coupling through a diffusive linear field. In the limit of fast diffusion this setup reduces to the classical Kuramoto–Battogtokh model. We demonstrate that for a finite diffusion stable chimera solitons, namely localized synchronous domain in an infinite asynchronous environment, are possible. The solitons are stable also for finite density of oscillators, but in this case they sway with a nearly constant speed. This finite-density-induced motility disappears in the continuum limit, as the velocity of the solitons is inverse proportional to the density. A long-wave instability of the homogeneous asynchronous state causes soliton turbulence, which appears as a sequence of soliton mergings and creations. As the instability of the asynchronous state becomes stronger, this turbulence develops into a spatio-temporal intermittency.
We consider a one-dimensional oscillatory medium with a coupling through a diffusive linear field. In the limit of fast diffusion this setup reduces to the classical Kuramoto–Battogtokh model. We demonstrate that for a finite diffusion stable chimera solitons, namely localized synchronous domain in an infinite asynchronous environment, are possible. The solitons are stable also for finite density of oscillators, but in this case they sway with a nearly constant speed. This finite-density-induced motility disappears in the continuum limit, as the velocity of the solitons is inverse proportional to the density. A long-wave instability of the homogeneous asynchronous state causes soliton turbulence, which appears as a sequence of soliton mergings and creations. As the instability of the asynchronous state becomes stronger, this turbulence develops into a spatio-temporal intermittency.
Flow control is a highly relevant topic for micromanipulation of colloidal particles in microfluidic applications. Here, we report on a system that combines two-surface bound flows emanating from thermo-osmotic and diffusio-osmotic mechanisms. These opposing flows are generated at a gold surface immersed into an aqueous solution containing a photo-sensitive surfactant, which is irradiated by a focused UV laser beam. At low power of incoming light, diffusio-osmotic flow due to local photo-isomerization of the surfactant dominates, resulting in a flow pattern oriented away from the irradiated area. In contrast, thermo-osmotic flow takes over due to local heating of the gold surface at larger power, consequently inducing a flow pointing toward the hotspot. In this way, this system allows one to reversibly switch from outward to inward liquid flow with an intermittent range of zero flow at which tracer particles undergo thermal motion by just tuning the laser intensity only. Our work, thus, demonstrates an optofluidic system for flow generation with a high degree of controllability that is necessary to transport particles precisely to desired locations, thereby opening innovative possibilities to generate advanced microfluidic applications.
Science education researchers have developed a refined understanding of the structure of science teachers’ pedagogical content knowledge (PCK), but how to develop applicable and situation-adequate PCK remains largely unclear. A potential problem lies in the diverse conceptualisations of the PCK used in PCK research. This study sought to systematize existing science education research on PCK through the lens of the recently proposed refined consensus model (RCM) of PCK. In this review, the studies’ approaches to investigating PCK and selected findings were characterised and synthesised as an overview comparing research before and after the publication of the RCM. We found that the studies largely employed a qualitative case-study methodology that included specific PCK models and tools. However, in recent years, the studies focused increasingly on quantitative aspects. Furthermore, results of the reviewed studies can mostly be integrated into the RCM. We argue that the RCM can function as a meaningful theoretical lens for conceptualizing links between teaching practice and PCK development by proposing pedagogical reasoning as a mechanism and/or explanation for PCK development in the context of teaching practice.
Science education researchers have developed a refined understanding of the structure of science teachers’ pedagogical content knowledge (PCK), but how to develop applicable and situation-adequate PCK remains largely unclear. A potential problem lies in the diverse conceptualisations of the PCK used in PCK research. This study sought to systematize existing science education research on PCK through the lens of the recently proposed refined consensus model (RCM) of PCK. In this review, the studies’ approaches to investigating PCK and selected findings were characterised and synthesised as an overview comparing research before and after the publication of the RCM. We found that the studies largely employed a qualitative case-study methodology that included specific PCK models and tools. However, in recent years, the studies focused increasingly on quantitative aspects. Furthermore, results of the reviewed studies can mostly be integrated into the RCM. We argue that the RCM can function as a meaningful theoretical lens for conceptualizing links between teaching practice and PCK development by proposing pedagogical reasoning as a mechanism and/or explanation for PCK development in the context of teaching practice.
We consider an ensemble of phase oscillators in the thermodynamic limit, where it is described by a kinetic equation for the phase distribution density. We propose an Ansatz for the circular moments of the distribution (Kuramoto-Daido order parameters) that allows for an exact truncation at an arbitrary number of modes. In the simplest case of one mode, the Ansatz coincides with that of Ott and Antonsen [Chaos 18, 037113 (2008)]. Dynamics on the extended manifolds facilitate higher-dimensional behavior such as chaos, which we demonstrate with a simulation of a Josephson junction array. The findings are generalized for oscillators with a Cauchy-Lorentzian distribution of natural frequencies.
Flares are magnetically driven explosions that occur in the atmospheres of all main sequence stars that possess an outer convection zone. Flaring activity is rooted in the magnetic dynamo that operates deep in the stellar interior, propagates through all layers of the atmosphere from the corona to the photosphere, and emits electromagnetic radiation from radio bands to X-ray. Eventually, this radiation, and associated eruptions of energetic particles, are ejected out into interplanetary space, where they impact planetary atmospheres, and dominate the space weather environments of young star-planet systems.
Thanks to the Kepler and the Transit Exoplanet Survey Satellite (TESS) missions, flare observations have become accessible for millions of stars and star-planet systems. The goal of this thesis is to use these flares as multifaceted messengers to understand stellar magnetism across the main sequence, investigate planetary habitability, and explore how close-in planets can affect the host star.
Using space based observations obtained by the Kepler/K2 mission, I found that flaring activity declines with stellar age, but this decline crucially depends on stellar mass and rotation. I calibrated the age of the stars in my sample using their membership in open clusters from zero age main sequence to solar age. This allowed me to reveal the rapid transition from an active, saturated flaring state to a more quiescent, inactive flaring behavior in early M dwarfs at about 600-800 Myr. This result is an important observational constraint on stellar activity evolution that I was able to de-bias using open clusters as an activity-independent age indicator.
The TESS mission quickly superseded Kepler and K2 as the main source of flares in low mass M dwarfs. Using TESS 2-minute cadence light curves, I developed a new technique for flare localization and discovered, against the commonly held belief, that flares do not occur uniformly across their stellar surface: In fast rotating fully convective stars, giant flares are preferably located at high latitudes. This bears implications for both our understanding of magnetic field emergence in these stars, and the impact on the exoplanet atmospheres: A planet that orbits in the equatorial plane of its host may be spared from the destructive effects of these poleward emitting flares.
AU Mic is an early M dwarf, and the most actively flaring planet host detected to date. Its innermost companion, AU Mic b is one of the most promising targets for a first observation of flaring star-planet interactions. In these interactions, the planet influences the star, as opposed to space weather, where the planet is always on the receiving side. The effect reflects the properties of the magnetosphere shared by planet and star, as well as the so far inaccessible magnetic properties of planets. In the about 50 days of TESS monitoring data of AU Mic, I searched for statistically robust signs of flaring interactions with AU Mic b as flares that occur in surplus of the star's intrinsic activity. I found the strongest yet still marginal signal in recurring excess flaring in phase with the orbital period of AU Mic b. If it reflects true signal, I estimate that extending the observing time by a factor of 2-3 will yield a statistically significant detection. Well within the reach of future TESS observations, this additional data may bring us closer to robustly detecting this effect than we have ever been.
This thesis demonstrates the immense scientific value of space based, long baseline flare monitoring, and the versatility of flares as a carrier of information about the magnetism of star-planet systems. Many discoveries still lay in wait in the vast archives that Kepler and TESS have produced over the years. Flares are intense spotlights into the magnetic structures in star-planet systems that are otherwise far below our resolution limits. The ongoing TESS mission, and soon PLATO, will further open the door to in-depth understanding of small and dynamic scale magnetic fields on low mass stars, and the space weather environment they effect.
Cosmic rays (CRs) are a ubiquitous and an important component of astrophysical environments such as the interstellar medium (ISM) and intracluster medium (ICM). Their plasma physical interactions with electromagnetic fields strongly influence their transport properties. Effective models which incorporate the microphysics of CR transport are needed to study the effects of CRs on their surrounding macrophysical media. Developing such models is challenging because of the conceptional, length-scale, and time-scale separation between the microscales of plasma physics and the macroscales of the environment. Hydrodynamical theories of CR transport achieve this by capturing the evolution of CR population in terms of statistical moments. In the well-established one-moment hydrodynamical model for CR transport, the dynamics of the entire CR population are described by a single statistical quantity such as the commonly used CR energy density. In this work, I develop a new hydrodynamical two-moment theory for CR transport that expands the well-established hydrodynamical model by including the CR energy flux as a second independent hydrodynamical quantity. I detail how this model accounts for the interaction between CRs and gyroresonant Alfvén waves. The small-scale magnetic fields associated with these Alfvén waves scatter CRs which fundamentally alters CR transport along large-scale magnetic field lines. This leads to the effects of CR streaming and diffusion which are both captured within the presented hydrodynamical theory. I use an Eddington-like approximation to close the hydrodynamical equations and investigate the accuracy of this closure-relation by comparing it to high-order approximations of CR transport. In addition, I develop a finite-volume scheme for the new hydrodynamical model and adapt it to the moving-mesh code Arepo. This scheme is applied using a simulation of a CR-driven galactic wind. I investigate how CRs launch the wind and perform a statistical analysis of CR transport properties inside the simulated circumgalactic medium (CGM). I show that the new hydrodynamical model can be used to explain the morphological appearance of a particular type of radio filamentary structures found inside the central molecular zone (CMZ). I argue that these harp-like features are synchrotron-radiating CRs which are injected into braided magnetic field lines by a point-like source such as a stellar wind of a massive star or a pulsar. Lastly, I present the finite-volume code Blinc that uses adaptive mesh refinement (AMR) techniques to perform simulations of radiation and magnetohydrodynamics (MHD). The mesh of Blinc is block-structured and represented in computer memory using a graph-based approach. I describe the implementation of the mesh graph and how a diffusion process is employed to achieve load balancing in parallel computing environments. Various test problems are used to verify the accuracy and robustness of the employed numerical algorithms.
Beim Resonanzenergietransfer werden Fotonen von einem angeregten Donator über einen Wechselwirkungsabstand auf einen Akzeptor übertragen. Nach der quantenmechanischen Theorie von FÖRSTER kann dieser Abstand mit Hilfe des Überlappungsintegrals von Fluoreszenzspektrum des Donators und Absorp-tionsspektrum des Akzeptors berechnet werden.
Eine andere Möglichkeit der Bestimmung erhält man mit Hilfe von statistischen Modellen, die in einem Überblick zusammengestellt sind. Dabei kann der Abstand durch Auswertung der Löschkurve bestimmt werden.
In dieser Arbeit wird dazu eine weitere statistische Variante der Bestimmung des Wechselwirkungsradius hinzugefügt und an einem Beispiel ausführlich demonstriert.
Beim Resonanzenergietransfer werden Fotonen von einem angeregten Donator über einen Wechselwirkungsabstand auf einen Akzeptor übertragen. Nach der quantenmechanischen Theorie von FÖRSTER kann dieser Abstand mit Hilfe des Überlappungsintegrals von Fluoreszenzspektrum des Donators und Absorp-tionsspektrum des Akzeptors berechnet werden.
Eine andere Möglichkeit der Bestimmung erhält man mit Hilfe von statistischen Modellen, die in einem Überblick zusammengestellt sind. Dabei kann der Abstand durch Auswertung der Löschkurve bestimmt werden.
In dieser Arbeit wird dazu eine weitere statistische Variante der Bestimmung des Wechselwirkungsradius hinzugefügt und an einem Beispiel ausführlich demonstriert.