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Rapid progress of experimental biology has provided a huge flow of quantitative data, which can be analyzed and understood only through the application of advanced techniques recently developed in theoretical sciences. On the other hand, synthetic biology enabled us to engineer biological models with reduced complexity. In this review we discuss that a multidisciplinary approach between this sciences can lead to deeper understanding of the underlying mechanisms behind complex processes in biology. Following the mini symposia "Noise and oscillations in biological systems" on Physcon 2011 we have collected different research examples from theoretical modeling, experimental and synthetic biology.
We consider chimera states in a one-dimensional medium of nonlinear nonlocally coupled phase oscillators. Stationary inhomogeneous solutions of the Ott-Antonsen equation for a complex order parameter that correspond to fundamental chimeras have been constructed. Stability calculations reveal that only some of these states are stable. The direct numerical simulation has shown that these structures under certain conditions are transformed to breathing chimera regimes because of the development of instability. Further development of instability leads to turbulent chimeras.
We study numerical propagation of energy in a one-dimensional Ding-Dong lattice composed of linear oscillators with elastic collisions. Wave propagation is suppressed by breaking translational symmetry, and we consider three ways to do this: position disorder, mass disorder, and a dimer lattice with alternating distances between the units. In all cases the spreading of an initially localized wavepacket is irregular, due to the appearance of chaos, and subdiffusive. For a range of energies and of weak and moderate levels of disorder, we focus on the macroscopic statistical characterization of spreading. Guided by a nonlinear diffusion equation, we establish that the mean waiting times of spreading obey a scaling law in dependence of energy. Moreover, we show that the spreading exponents very weakly depend on the level of disorder.