Refine
Year of publication
- 2006 (840) (remove)
Document Type
- Article (581)
- Doctoral Thesis (82)
- Monograph/Edited Volume (54)
- Conference Proceeding (32)
- Postprint (26)
- Preprint (24)
- Review (18)
- Other (17)
- Master's Thesis (3)
- Working Paper (2)
Language
- English (840) (remove)
Keywords
- climate change (4)
- polyelectrolyte (4)
- Fluoreszenz-Resonanz-Energie-Transfer (3)
- Immunoassay (3)
- Nanopartikel (3)
- Nichtlineare Dynamik (3)
- Optimality Theory (3)
- Polyelektrolyt (3)
- metabolite profiling (3)
- metabolomics (3)
Institute
- Institut für Physik und Astronomie (159)
- Institut für Biochemie und Biologie (128)
- Institut für Chemie (81)
- Institut für Geowissenschaften (73)
- Institut für Mathematik (71)
- Institut für Informatik und Computational Science (55)
- Department Linguistik (46)
- Extern (37)
- Department Psychologie (36)
- Institut für Anglistik und Amerikanistik (34)
The salivary glands of the blowfly were injected with luminescent oxygen-sensitive microbeads. The changes in oxygen content within individual gland tubules during hormone-induced secretory activity were quantified. The measurements are based on an upgraded phase-modulation technique, where the phase shift of the sensor phosphorescence is determined independently from concentration and background signals. We show that the combination of a lock-in amplifier with a fluorescence microscope results in a convenient setup to measure oxygen concentrations within living animal tissues at the cellular level.
Molecule-detective
(2006)
Biosensors are analytical devices incorporating biological material (receptor) intimately associated with or integrated within a physicochernical transducer. Advantages are the high selectivity for analyte detection. Examples given comprise the very successful commercial blood glucose biosensors made for the self-control by the diabetic patients. Other biosensors are part of an analytic system, including the sensor chips Of surface plasmon resonance or interferometry based devices, piezoelectric or reflectometric sensors capable of direct measurement of mass changes, and thermometric and other reagentless sensors. The development of nanotubes-based devices allows for significant enhancment of the signal-to-noise ratio of the biosensors. A milestone on the way towards miniaturization and parallelization of biosensors is the recently developed and prize-winning electronic DNA chip
Translational diffusion of fluorescent tracer molecules in azobenzene polymer layers is studied at different temperatures and under illumination using the method of fluorescence recovery after photobleaching. Diffusion is clearly observed in the dark above the glass transition temperature, while homogeneous illumination at 488 nm and 100 mW/cm(2) does not cause any detectable diffusion of the dye molecules within azobenzene layers. This implies that the viscosity of azobenzene layers remains nearly unchanged under illumination with visible light in the absence of internal or external forces. (c) 2006 American Institute of Physics.
The land snail genus Solatopupa consists of six species and has a peri-Tyrrhenian distribution; most of the species have a very narrow range and all of them except one (Solatopupa cianensis, which inhabits porphyritic rocks) are strictly bound to calcareous substrates. One species (Solatopupa gidoni) is limited to Sardinia, Corsica, and Elba Island. Because the potential for dispersal of these snails is low, the insular range of this species has been traditionally related to the Oligocenic detachment of the Sardinia-Corsica microplate from the Iberian plate and its subsequent rotation towards the Italian peninsula. In this Study, we used sequences of three mitochondrial and one nuclear gene to reconstruct the evolutionary history of the genus. Our phylogenetic results are consistent with the genetic relationships found using allozymes, but contrast with the phylogenetic hypotheses based on karyology and morphology. Molecular clock estimates indicate that the main cladogenetic events in the genus occurred between the middle Miocene and the middle-late Pliocene. Patterns of phylogenetic relationships and geological considerations suggest that the cladogenesis of the genus can be explained by vicariant (tectonic) processes. Our datings do not support a causal relation between the split of S. guidoni from its continental sister taxon and the initial phases of the detachment of the Corsica-Sardinia microplate from the mainland. On the contrary, time estimates coincide with the very last phase of detachment of the microplate (from 5 to 3 Myrs ago). Overall, our molecular clock estimates are in good agreement with the latest geological views on the tectonic evolution of the peri-Tyrrhenian area.
Molecular identification and functional characterization of an adenylyl cyclase from the honeybee
(2006)
Cyclic AMP (cAMP) serves as an important messenger in virtually all organisms. In the honeybee (Apis mellifera), cAMP-dependent signal transduction has been implicated in behavioural processes as well as in learning and memory. Key components of cAMP-signalling cascades are adenylyl cyclases. However, the molecular identities and biochemical properties of adenylyl cyclases are completely unknown in the honeybee. We have cloned a cDNA (Amac3) from honeybee brain that encodes a membrane-bound adenylyl cyclase. The Amac3 gene is an orthologue of the Drosophila ac39E gene. The corresponding proteins share an overall amino acid similarity of approximately 62%. Phylogenetically, AmAC3 belongs to group 1 adenylyl cyclases. Heterologously expressed AmAC3 displays basal enzymatic activity and efficient coupling to endogenous G protein signalling pathways. Stimulation of beta-adrenergic receptors induces AmAC3 activity with an EC50 of about 3.1 mu m. Enzymatic activity is also increased by forskolin (EC50 approximately 15 mu m), a specific agonist of membrane-bound adenylyl cyclases. Similar to certain biogenic amine receptor genes of the honeybee, Amac3 transcripts are expressed in many somata of the brain, especially in mushroom body neurones. These results suggest that the enzyme serves in biogenic amine signal transduction cascades and in higher brain functions that contribute to learning and memory of the bee
This thesis studies strong, completely charged polyelectrolyte brushes. Extensive molecular dynamics simulations are performed on different polyelectrolyte brush systems using local compute servers and massively parallel supercomputers. The full Coulomb interaction of charged monomers, counterions, and salt ions is treated explicitly. The polymer chains are anchored by one of their ends to a uncharged planar surface. The chains are treated under good solvent conditions. Monovalent salt ions (1:1 type) are modelled same as counterions. The studies concentrate on three different brush systems at constant temperature and moderate Coulomb interaction strength (Bjerrum length equal to bond length): The first system consists of a single polyelectrolyte brush anchored with varying grafting density to a plane. Results show that chains are extended up to about 2/3 of their contour length. The brush thickness slightly grows with increasing anchoring density. This slight dependence of the brush height on grafting density is in contrast to the well known scaling result for the osmotic brush regime. That is why the result obtained by simulations has stimulated further development of theory as well as new experimental investigations on polyelectrolyte brushes. This observation can be understood on a semi-quantitative level using a simple scaling model that incorporates excluded volume effects in a free-volume formulation where an effective cross section is assigned to the polymer chain from where couterions are excluded. The resulting regime is called nonlinear osmotic brush regime. Recently this regime was also obtained in experiments. The second system studied consists of polyelectrolyte brushes with added salt in the nonlinear osmotic regime. Varying salt is an important parameter to tune the structure and properties of polyelectrolytes. Further motivation is due to a theoretical scaling prediction by Pincus for the salt dependence of brush thickness. In the high salt limit (salt concentration much larger than counterion concentration) the brush height is predicted to decrease with increasing external salt, but with a relatively weak power law showing an exponent -1/3. There is some experimental and theoretical work that confirms this prediction, but there are other results that are in contradiction. In such a situation simulations are performed to validate the theoretical prediction. The simulation result shows that brush thickness decreases with added salt, and indeed is in quite good agreement with the scaling prediction by Pincus. The relation between buffer concentration and the effective ion strength inside the brush at varying salt concentration is of interest both from theoretical as well as experimental point of view. The simulation result shows that mobile ions (counterions as well as salt) distribute nonhomogeneously inside and outside of the brush. To explain the relation between the internal ion concentration with the buffer concentration a Donnan equilibrium approach is employed. Modifying the Donnan approach by taking into account the self-volume of polyelectrolyte chains as indicated above, the simulation result can be explained using the same effective cross section for the polymer chains. The extended Donnan equilibrium relation represents a interesting theoretical prediction that should be checked by experimental data. The third system consist of two interacting polyelectrolyte brushes that are grafted to two parallel surfaces. The interactions between brushes are important, for instance, in stabilization of dispersions against flocculation. In the simulations pressure is evaluated as a function of separation D between the two grafting planes. The pressure behavior shows different regimes for decreasing separation. This behavior is in qualitative agreement with experimental data. At relatively weak compression the pressure behavior obtained in the simulation agrees with a 1/D power law predicted by scaling theory. Beyond that the present study could supply new insight for understanding the interaction between polyelectrolyte brushes.
Brassinosteroids (BRs) are steroidal plant hormones with important regulatory roles in various physiological processes, including growth, xylem differentiation, disease resistance, and stress tolerance. Several components of the BR signal transduction pathway have been identified. The extracellular domains of receptor kinases such as BRI1 perceive BRs and transduce the signal via intracellular kinase domains. Within the cell further kinases and phosphatases determine the phosphorylation status of transcription factors such as BES1 and BZR1. These factors mediate major BR effects. Studies of BR-regulated genes shed light on the molecular mode of BR action. Genes encoding cell-wall-modifying enzymes, enzymes of the BR biosynthetic pathway, transcription factors, and proteins involved in primary and secondary metabolism are subject to BR-regulation. Gene expression data also point at interactions with other phytohormones and a role of BR in stress responses. This article gives a survey of the BR-signaling pathway. Two BR-responsive genes, OPR3 and EXO, are described in detail
In this paper a self-checking carry select adder is proposed. The duplicated adder blocks which are inherent to a carry select adder without error detection are checked modulo 3. Compared to a carry select adder without error detection the delay of the MSB of the sum of the proposed adder does not increase. Compared to a self-checking duplicated carry select adder the area is reduced by 20%. No restrictions are imposed on the design of the adder blocks
To characterise the habitat preferences of ring ouzel (Turdus torquatus) and blackbird (T. merula) in Switzerland, we adopt species distribution modelling and predict the species’ spatial distribution. We model on two different scales to analyse in how far downscaling leads to a different set of predictors to describe the realised habitat best. While the models on macroscale (grid of one square kilometre) cover the entire country, we select a set of smaller plots for modelling on territory scale. Whereas ring ouzels occur in altitudes above 1’000 m a.s.l. only, blackbirds occur from the lowlands up to the timber line. The altitudinal range overlap of the two species is up to 400 m. Despite both species coexist on macroscale, a direct niche overlap on territory scale is rare. Small-scale differences in vegetation cover and structure seem to play a dominant role for habitat selection. On macroscale however, we observe a high dependency on climatic variables mainly representing the altitudinal range and the related forest structure preferred by the two species. Applying the models for climate change scenarios, we predict a decline of suitable habitat for the ring ouzel with a simultaneous median altitudinal shift of +440 m until 2070. In contrast, the blackbird is predicted to benefit from higher temperatures and expand its range to higher elevations.
The overuse of rainforests in the last century and its consequences necessitate a rethinking of logging policies. To this end models have been developed to simulate rainforest dynamics and to allow optional management strategies to be evaluated. Parameterisation of presently existing models for a certain site needs a lot of work, thus the parameterisation effort is too high to apply the models to a wide range of rainforests. Hence, in this paper we introduce the simplified model FORREG using the knowledge we have gained from a more complex model, FORMIX3-Q. The FORREG model uses differential equations to determine the volume growth of three successional species groups. Parameterisation is simplified by a genetic algorithm, which determines the required internal model parameters from characteristics of the forest dynamics. The new model is employed to assess the sustainability of various logging policies in terms of yield and damage. Results for three forests are discussed: (1) the tropical lowland rain forest in the Deramakot Forest Reserve, (2) the Lambir National Park in Malaysia and (3) a subtropical forest in Paraguay. Our model reproduces both undisturbed forest dynamics and dynamics of logged forests simulated with FORMIX3-Q very well. However, the resultant volumes of yield and damage differ slightly from those gained by FORMIX3-Q if short logging cycles are simulated. Choosing longer logging cycles leads to a good correspondence of both models. For the Deramakot Forest Reserve different logging cycles are compared and discussed. (c) 2006 Elsevier B.V. All rights reserved.
Claiming that cross-speaker "but" can signal correction in dialogue, we start by describing the types of corrections "but" can communicate by focusing on the Speech Act (SA) communicated in the previous turn and address the ways in which "but" can correct what is communicated. We address whether "but" corrects the proposition, the direct SA or the discourse relation communicated in the previous turn. We will also briefly address other relations signalled by cross-turn "but". After presenting a typology of the situations "but" can correct, we will address how these corrections can be modelled in the Information State model of dialogue, motivating this work by showing how it can be used to potentially avoid misunderstandings. We wrap up by showing how the model presented here updates beliefs in the Information State representation of the dialogue and can be used to facilitate response deliberation.
We analyze anaphoric phenomena in the context of building an input understanding component for a conversational system for tutoring mathematics. In this paper, we report the results of data analysis of two sets of corpora of dialogs on mathematical theorem proving. We exemplify anaphoric phenomena, identify factors relevant to anaphora resolution in our domain and extensions to the input interpretation component to support it.
One type of internal diachronic change that has been extensively studied for spoken languages is grammaticalization whereby lexical elements develop into free or bound grammatical elements. Based on a wealth of spoken languages, a large amount of prototypical grammaticalization pathways has been identified. Moreover, it has been shown that desemanticization, decategorialization, and phonetic erosion are typical characteristics of grammaticalization processes. Not surprisingly, grammaticalization is also responsible for diachronic change in sign languages. Drawing data from a fair number of sign languages, we show that grammaticalization in visual-gestural languages – as far as the development from lexical to grammatical element is concerned – follows the same developmental pathways as in spoken languages. That is, the proposed pathways are modalityindependent. Besides these intriguing parallels, however, sign languages have the possibility of developing grammatical markers from manual and non-manual co-speech gestures. We will discuss various instances of grammaticalized gestures and we will also briefly address the issue of the modality-specificity of this phenomenon.
The spin probes TEMPO, TEMPOL, and CAT-1 were used to investigate microviscosity and micropolarity of imidazolium based ionic liquids bearing either tetrafluoroborate or hexafluorophosphate as anions and a variation of the substitution at the imidazolium ion. The average rotational correlation times (r) obtained by complete simulation of the X-band ESR spectra of TEMPO, TEMPOL, and CAT-1 increase with increasing viscosity of the ionic liquid although no Stokes Einstein behavior is observed. This is caused by microviscosity effects of the ionic liquids shown by application of the Gierer-Wirtz theory. Interestingly, the jump of the probe molecule into the free volume of the ionic liquids is a nonactivated process. The hyperfine coupling constants (A(iso) (N-14)) of TEMPO and TEMPOL dissolved in the ionic liquids do not depend on the structure of the ionic liquids. The A(iso) (N-14) values show a micropolarity of the ionic liquids that is comparable with methylenchloride in case of TEMPO and with dimethylsulfoxide in case of TEMPOL. Micropolarity monitored by CAT-1 strongly depends on structural variation of the ionic liquid. CAT-1 dissolved in imidazolium salts substituted with shorter alkyl chains at the nitrogen atom exhibits a micropolarity comparable with dimethylsulfoxide. A significant lower micropolarity is found for imidazolium. salts bearing a longer alkyl substituent at the nitrogen atom or a methyl substituent at C-2. Copyright (c) 2006 John Wiley & Sons, Ltd
Several previous studies have addressed the diagenetic evolution of heterozoan carbonate assemblages. Generally it is assumed that early diagenetic processes in heterozoan settings are mainly destructive, including abrasion and dissolution on the sea floor. Constructive diagenesis (cementation) is delayed to later stages in the burial environment, with pressure solution of calcitic grains acting as a cement source. This paper presents a study of Oligo- Miocene inner- to outer-ramp heterozoan carbonates from the Central Mediterranean (Maltese Islands and Sicily) indicating that early diagenetic processes are more important than previously assumed. Four to five different cement types, including fibrous, two types of epitaxial, bladed and blocky cement, are distinguished based on transmitted light microscopy. Cathodoluminescence microscopy allowed a differentiation between primary high-Mg calcitic (fibrous and epitaxial cement I) and primary low-Mg calcitic (epitaxial cement II, bladed and blocky) cements. Stable-isotope data indicate cement precipitation from marine, marine-derived, and meteoric waters. Trace-element analyses point to cementation in an open system (Maltese Islands) and a closed system (Sicily). Our investigations show that the majority of constructive diagenetic processes in these rocks occurs rather early in the shallow, marine burial environment, which is transitional between the marine seafloor and the deep-burial diagenctic environment. The main cement source in this environment is assumed to be aragonite. We suggest careful consideration of the importance of aragonitic components in fossil heterozoan settings, which seem to be more abundant than previously assumed and can act as a major early cement source. Due to the low preservation potential of these components, detailed geochemical studies are necessary to detect aragonite as the cement source. Our findings also have implications when considering the reservoir qualities of these rocks, because primary porosity can be occluded early and secondary porosity is not preserved
Even during visual fixation of a stationary target, our eyes perform rather erratic miniature movements, which represent a random walk. These "fixational" eye movements counteract perceptual fading, a consequence of fast adaptation of the retinal receptor systems to constant input. The most important contribution to fixational eye movements is produced by microsaccades; however, a specific function of microsaccades only recently has been found. Here we show that the occurrence of microsaccades is correlated with low retinal image slip approximate to 200 ms before microsaccade onset. This result suggests that microsaccades are triggered dynamically, in contrast to the current view that microsaccades are randomly distributed in time characterized by their rate-of-occurrence of 1 to 2 per second. As a result of the dynamic triggering mechanism, individual microsaccade rate can be predicted by the fractal dimension of trajectories. Finally, we propose a minimal computational model for the dynamic triggering of microsaccades