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Climate change, driven by increasing atmospheric levels of carbon dioxide (CO2), presents a significant societal challenge for the 21st century. Biotechnological approaches for microbial production of commodity chemicals and fuels offer possible solutions to re-fix CO2 from the atmosphere, thereby mitigating carbon emissions and contributing to a sustainable carbon-economy in the future. Biological CO2 fixation is also at the heart of agricultural productivity, where photosynthesis and the Calvin-Benson-Bassham cycle present promising biotechnological targets for crop improvement.
Synthetic biology allows testing metabolic solutions not known to exist in nature, which may exceed their natural counterparts in terms of efficiency. In this thesis, I explore the design of such new-to-nature metabolic pathways for biological CO2 utilization and their implementation in living cells (in vivo).
In the first chapter, I describe the development of a metabolic pathway that enables intracellular conversion of CO2 to formate, giving access to highly efficient carbon fixation routes. In nature, CO2-reduction remains restricted to anaerobic organisms and low redox potentials. Here, we introduce the “CORE cycle”, a synthetic metabolic pathway that converts CO2 to formate under fully aerobic conditions and ambient CO2 levels, using only NADPH as a reductant. We leverage this synthetic, ATP-energized pathway to overcome the thermodynamic and kinetic barriers associated with CO2-reduction. Applying rational metabolic engineering and adaptive evolution, this work demonstrates that Escherichia coli can utilize ambient CO2 as the sole source of one-carbon units and serine, achieving a first step towards novel modes of synthetic autotrophy. We further apply computational modeling to showcase the potential of the CORE cycle as a photorespiratory bypass for enhancing photosynthesis.
In the second chapter, I describe the development of the “LCM module”, a novel metabolic route for CO2-incorporating conversion of acetyl-CoA to pyruvate. This route relies on the newly uncovered, promiscuous activity of an adenosylcobalamin (B12)-dependent enzyme, which we significantly optimize through targeted hypermutation and in vivo selection strategies. The LCM module provides a shorter and more efficient pathway for acetyl-CoA assimilation compared to natural routes, offering novel opportunities for synthetic CO2 fixation.
Overall, through theoretical pathway analysis, enzyme bioprospecting, and modular metabolic engineering in E. coli, this thesis expands the solution space for biological CO2 fixation.
Terrestrial landscape dynamics are dominated by the production, mobilisation, transfer and deposition of sediment. Numerous chemical elements are carried by sediments, making them a key component for ecological processes, as soil constitution and thus plants and animal ecosystems depends on them, and by extension the human species. They are also essential for climate evolution and regulation as marine sedimentation acts as a carbon sink. However, the processes at the origin of their production, mobilisation, transfer can occur suddenly with high-energy content – such as volcanic eruption, mass wasting or flooding events and wildfires – shaking ecosystems and shaping landforms. Besides, in the last era, the human species has shown its ability to disturb landscape dynamics and change sediments cycles. Thus, there is a need for predictive understanding of the processes involved. This relies on un-derstanding of the mechanisms of key processes and their controls, and knowledge of the state and evolution of the Earth’s surface. Classic approaches to these challenges include empirical observations and numerical modeling of geochemical fluxes and surface processes, as well as the study of terrestrial sedimentary archives to better understand the parameters at stake in landscape dynamics and climate changes and the different actions and retroactions between the production, mobilisation, transfer and deposition of sediments which ultimately shape landscapes. Environmental seismology complements these approaches.
Environmental seismology is the science topic investigating the source functions and propagation properties of seismic vibrations triggered by processes happening at or near the Earth’s surface, below and above it - cryosphere, hydrosphere, atmosphere, human habitat, biosphere, etc., to obtain insight into all these physical processes. Indeed, from mass wasting event to rivers, from wild species to hu-man, all these processes are generating seismic waves. Environmental seismology is a rather recent field, with new branches rapidly expanding and at various stages of scientific progress. This thesis is motivated by the goal of learning more on two major natural process hazards (river bedload transport and mass wasting) as well as on human-generated acoustic hazard, while covering the axis of funda-mental research progression, from data exploration and method and theory development to proof of concept, with the twin aims of developing a better understanding of the operation of these specific processes, and of advancing the methods we have at our disposal to study them.
First, I provide a benchmark for assessment of the reliability of existing seismic bedload model inver-sion to retrieve bedload flux from seismic data. Bedload flux measurements are essential to better understand river dynamics, and this can be achieved with environmental seismology. However, due to a lack of well-constrained validation data, the accuracy of the resulting inversions is unknown. I address this gap in Chapter 2.2, reporting a seismic field experiment, and comparing the results to high-quality independent bedload measurements to constrain a seismic bedload model. The study shows that the quality of bedload flux estimates from seismic data strongly depends on the quality of the input data for the model. Direct measurements of relevant parameters, chiefly seismic ground proper-ties needed for the Green's function and the grain size distribution of the moving bedload, considerably improve the model quality over generic approaches using empirical or theoretical functions. I also pro-vide a numerical tool to facilitate the use of water turbulence and bedload seismic inversion models: seismic models for bedload flux and water turbulence require painstaking work to constrain parame-ters describing the ground properties by active seismic study or analysis of passive seismic data, and the grain size distribution via independent measurements. Reasonable predictions can be achieved by using a Monte Carlo approach to optimize the free parameters with respect to the target parameters. The validation of the tool, in Chapter 2.3, with independent measurements of water depth and bedload flux at a study site on the Eshtemoa river in Israël makes it available for reliable use at other sites. The work reported in this chapter has been published in Lagarde et al. 2021 and Dietze et al. 2019b.
In a second study, reported in Chapter 3, I investigate the formation of a failure plane prior to a rock-slide. A better understanding of the dynamics of the preparation phase is essential to determine the timing, volume and mobilization mechanism of a rock slope failure, and this can be achieved with envi-ronmental seismology. I take advantage of a network of seismic stations close to an instable slope recording cracking signals prior to the slope failure, and use a machine learning technique based on hidden Markov models to isolate these signals from the seismic data, retrieving the cumulative number of cracking events in a period of 20 days prior to a large rockslide and 10 days after. The trajectory of the cumulative number of cracks shifts from a rather linear shape in the two weeks prior to the rock-slide to an S-shaped development in the last 27 h before failure. I interpret this change as a switch from initial distributed cracking to localised damage accumulation in the hours prior to the failure. I develop a simple physical model to explain the temporal evolution of crack activity during the S-shape phase, revealing the importance of an internal parameter, the total crack boundary length as the dominant control parameter of failure plane evolution. This study has been published as Lagarde et al. 2023.
Third, I develop a model converting acoustic signals to seismic signals. A part of the acoustic vibrations generated on the Earth’s surface is converted to seismic signals at the ground interface. Consequently, noise pollution may be translated to slope fatigue and rock micro (or macro) fracturing resulting in a degrading effect on landforms. Moreover, this pollution can have negative impacts, such as physical, physiological as well as psychological effects on animal species. At present, the impact of seismic pol-lution generated by acoustic sources is difficult to evaluate. In Chapter 4, I improve and implement a model converting the acoustic pressure generated by a source in the atmosphere to the corresponding seismic signal for a receiver within the ground. The ground is considered to be a porous elastic medium in which wave behaviour can be approximated by the Biot-Stoll model. The model is extended for use of a temporal pressure pulse as an input, and to produce output on a plan 2D map, where the wind effect on the acoustic to seismic coupling can be reproduced. I invest extensive effort in making the model user-friendly, as the project aims at reaching a large audience, comprising, for example, geo-morphologists, biologists and sociologists. Finally, the model is subjected to synthetic testing as well as a qualitative comparison of the predicted ground particle velocity and the seismic signal of a real heli-copter flight as a source of acoustic input.
These studies advance understanding of the operation of specific natural processes in channels and on hillslopes, and bring us closer to designing functioning early warning systems for mass-wasting and flood events. This thesis also raises questions that have not been considered before, such as the con-tribution of human acoustic pollution to the seismic hum and its impact on the natural environment, or the importance of cracks in the self-development of the failure plane prior to slope. Together, these studies question general assumptions usually made regarding the triggering of mass wasting or the hillslope-channel connectivity. Beyond this, the thesis covers the axis of fundamental research progres-sion, from data exploration and method and theory development to proof of concept, and shows how in the rapidly developing field of environmental seismology, an active awareness of progress can help strengthen and accelerate general advances.
The European Alps are amongst the regions with highest glacier mass loss rates over the last decades. Under the threat of ongoing climate change, the ability to predict glacier mass balance changes for water and risk management purposes has become imperative. This raises an urgent need for reliable glacier models. The European Alps do not only host glaciers, but also numerous caves containing carbonate formations, called speleothems. Previous studies have shown that those speleothems also grew during times when the cave was covered by a warm-based glacier. In this thesis, I utilise speleothems from the European Alps as archives of local, environmental conditions related to mountain glacier evolution.
Previous studies have shown that speleothem isotope data from the Alps can be strongly affected by in-cave processes. Therefore, part of this thesis focusses on developing an isotope evolution model, which successfully reproduces differences between contemporaneous growing speleothems. The model is used to propose correction approaches for prior calcite precipitation effects on speleothem oxygen isotopes (δ18O). Applications on speleothem records from caves outside of the Alps demonstrate that corrected δ18O agrees better with other records and climate model simulations.
Existing speleothem growth histories and carbon isotope (δ13C) records from Alpine caves located at different elevations are used to infer soil vs. glacier cover and the thermal regime of the glacier over the last glacial cycle. The compatibility with glacier evolution models is statistically assessed. A general agreement between speleothem δ13C-derived information on soil vs. glacier presence and modelled glacier coverage is found. However, glacier retreat during Marine Isotope Stage (MIS) 3 seems to be underestimated by the model. Furthermore, speleothem data provides evidence of surface temperature above the freezing point which is, however, not fully reproduced by the simulations.
History of glacier cover and their thermal regime is explored for the high-elevation cave system Melchsee-Frutt in the Swiss Alps. Based on new (MIS 9b – MIS 7b, MIS 2) and available speleothem δ13C (MIS 7a – 5d) data, warm-based glacier cover is inferred for MIS 8, 7d, 6, and 2. Also a short period of cold-based ice coverage is found for early MIS 6. In a detailed multi-proxy analysis (δ18O, δ13C, Mg/Ca and Sr/Ca), millennial-scale changes in the glacier-related source of the water infiltrating in the karst during MIS 8 and 7d are found and linked to Northern Hemisphere climate variability.
While speleothem records from high-elevation cave sites in the Alps exhibit huge potential for glacier reconstruction, several limitations remain, which are discussed throughout this thesis. Ultimately, recommendations are given to further leverage subglacial speleothems as an archive of glacier dynamics.
Galaxy morphology is a fossil record of how galaxies formed and evolved and can be regarded as a function of the dynamical state of a galaxy. It encodes the physical processes that dominate its evolutionary history, and is strongly aligned with physical properties like stellar mass, star formation rate and local environment. At a distance of ∼50 and 60 kpc, the Magellanic Clouds represent the nearest interacting pair of dwarf irregular galaxies to the Milky Way, rendering them an important test bed for galaxy morphology in the context of galaxy interactions and the effect of the local environment in which they reside. The Large Magellanic Cloud is classified as the prototype for Magellanic Spiral galaxies, with one prominent spiral arm, an offset bar and an inclined rotating disc while the Small Magellanic Cloud is classified as a dwarf Irregular galaxy and is known for its unstructured shape and large depth across the line–of–sight. Resolved stellar populations are powerful probes of a wide range of astrophysical phenomena, the proximity of the Magellanic Clouds allows us to resolve their stellar populations to individual stars that share coherent chemical and age distributions. The coherent properties of resolved stellar populations enable us to analyse them as a function of position within the Magellanic Clouds, offering a picture of the growth of the galaxies’ substructures over time and yielding a comprehensive view of their morphology. Furthermore, investigating the kinematics of the Magellanic Clouds offers valuable insights into their dynamics and evolutionary history. By studying the motions and velocities of stars within these galaxies, we can trace their past interactions, with the Milky Way or with each other and unravel the complex interplay of forces that have influenced the Magellanic Clouds’ formation and evolution.
In Chapter 2, the VISTA survey of the Magellanic Clouds was employed to generate unprecedented high-resolution morphological maps of the Magellanic Clouds in the near-infrared. Utilising colour-magnitude diagrams and theoretical evolutionary models to segregate stellar populations, this approach enabled a comprehensive age tomography of the galaxies. It revealed previously uncharacterised features in their central regions at spatial resolutions of 0.13 kpc (Large Magellanic Cloud) and 0.16 kpc (Small Magellanic Cloud), the findings showcased the impact of tidal interactions on their inner regions. Notably, the study highlighted the enhanced coherent structures in the Large Magellanic Cloud, shedding light on the significant role of the recent Magellanic Clouds’ interaction 200 Myr ago in shaping many of the fine structures. The Small Magellanic Cloud revealed asymmetry in younger populations and irregularities in intermediate-age ones, pointing towards the influence of past tidal interactions.
In Chapter 3, an examination of the outskirts of the Magellanic Clouds led to the identification of new substructures through the use of near-infrared photometry from the VISTA Hemisphere Survey and multi-dimensional phase-space information from Gaia. The distances and proper motions of these substructures were investigated. This analysis revealed the impact of past Magellanic Clouds’ interactions and the influence of the Milky Way’s tidal field on the morphology and kinematics of the Magellanic Clouds. A bi-modal distance distribution was identified within the luminosity function of the red clump stars in the Small Magellanic Cloud, notably in its eastern regions, with the foreground substructure being attributed to the Magellanic Clouds’ interaction around 200 Myr ago. Furthermore, associations with the Counter Bridge and Old Bridge were uncovered through the detection of background and foreground structures in various regions of the SMC.
In chapter 4, a detailed kinematic analysis of the Small Magellanic Cloud was conducted using spectra from the European Southern Observatory Science Archive Facility. The study reveals distinct kinematics in the Wing and bar regions, attributed to interactions with the Large Magellanic Cloud and variations in star formation history. Notably, velocity disparities are observed in the bar’s young main sequence stars, aligning with specific star-forming episodes, and suggesting potential galactic stretching or tidal stripping, as corroborated by proper motion studies.
As followers are becoming more educated and better connected, empowering leadership has gained traction in recent times as an alternative to traditional top-down models of leadership. Several scholars have investigated the relationship between empowering leadership and other variables in different contexts. As most previous studies have focused on the positive aspects of empowering leadership, research on its potential dark side is scarce. Furthermore, no previous study has examined whether and how the transfer of workload from followers to leaders can occur over time, which I proposed can lead to emotional exhaustion and work-family conflict among leaders. Therefore, I proposed that despite the positive outcomes of empowering leadership for both followers and leaders, it may also trigger negative outcomes capable of affecting the well-being of leaders. Drawing on the Conservation of Resources (COR) theory, Job Demand-Resources (JD-R) theory, and Too-Much-of-a-Good-Thing (TMGT) effect model, I investigated this idea. Using follower workload as a moderator, I proposed that the relationship between empowering leadership and leader workload is positive when follower workload is high and negative when follower workload is low. In addition, I examined how empowering leadership interacts with follower workload to affect leader emotional exhaustion and work-family conflict, mediated by leader workload. I proposed that this interaction results in a negative relationship between empowering leadership and both outcomes when follower workload is low, and a positive relationship when it is high.
I tested these hypotheses using data from a three-wave time-lagged design field study with 65 leader-follower dyads consisting of civil servants from different administrative entities of India and Pakistan. The time lag between each study variable was four weeks. At Time 1 (T1), followers answered questions about demographic characteristics, virtual interaction with their leaders, their workload, and the extent to which their leaders practice empowering leadership. At the same time, leaders answered questions about demographic characteristics and their job satisfaction. At Time 2 (T2), leaders provided data on their own workload. Finally, at Time 3 (T3), leaders rated their emotional exhaustion and work-family conflict. A moderated mediation model was tested using PROCESS Model 7 in R. The findings of the study reveal that a significant increase in follower workload through empowering leadership will also increase the leader's workload. Consequently, this increased leader workload leads to a crossover of this interactive effect onto the level of emotional exhaustion and work-family conflict experienced by leaders.
This research offers various contributions to the leadership literature. While empowering leadership has been commonly associated with positive outcomes, my study reveals that it can also lead to negative outcomes. In addition, it shifts the focus of existing research from the effect of empowering leadership on followers to the consequences that it might have for leaders themselves. Overall, my research underscores the need for leaders to consider the potential counterproductive effects of empowering leadership and tailor their approach accordingly.
Human-induced climate change is impacting the global water cycle by, e.g., causing changes in precipitation patterns, evapotranspiration dynamics, cryosphere shrinkage, and complex streamflow trends. These changes, coupled with the increased frequency and severity of extreme hydrometeorological events like floods, droughts, and heatwaves, contribute to hydroclimatic disasters, posing significant implications for local and global infrastructure, human health, and overall productivity.
In the tropical Andes, climate change is evident through warming trends, glacier retreats, and shifts in precipitation patterns, leading to altered risks of floods and droughts, e.g., in the upper Amazon River basin. Projections for the region indicate rising temperatures, potential glacier disappearance or substantial shrinkage, and altered streamflow patterns, highlighting challenges in water availability due to these expected changes and growing human water demand. The evolving trends in hydroclimatic conditions in the tropical Andes present significant challenges to socioeconomic and environmental systems, emphasizing the need for a comprehensive understanding to guide effective adaptation policies and strategies in response to the impacts of climate change in the region.
The main objective of this thesis is to investigate current hydrological dynamics in the tropical Andes of Peru and Ecuador and their responses to climate change. Given the scarcity of hydrometeorological data in the region, this objective was accomplished through a comprehensive data preparation and analysis in combination with hydrological modeling using the Soil and Water Assessment Tool (SWAT) eco-hydrological model. In this context, the initial steps involved assessing, identifying, and/or generating more reliable climate input data to address data limitations.
The thesis introduces RAIN4PE, a high-resolution precipitation dataset for Peru and Ecuador, developed by merging satellite, reanalysis, and ground-based data with surface elevation through the random forest method. Further adjustments of precipitation estimates were made for catchments influenced by fog/cloud water input on the eastern side of the Andes using streamflow data and applying the method of reverse hydrology. RAIN4PE surpasses other global and local precipitation datasets, showcasing superior reliability and accuracy in representing precipitation patterns and simulating hydrological processes across the tropical Andes. This establishes it as the optimal precipitation product for hydrometeorological applications in the region.
Due to the significant biases and limitations of global climate models (GCMs) in representing key atmospheric variables over the tropical Andes, this study developed regionally adapted GCM simulations specifically tailored for Peru and Ecuador. These simulations are known as the BASD-CMIP6-PE dataset, and they were derived using reliable, high-resolution datasets like RAIN4PE as reference data. The BASD-CMIP6-PE dataset shows notable improvements over raw GCM simulations, reflecting enhanced representations of observed climate properties and accurate simulation of streamflow, including high and low flow indices. This renders it suitable for assessing regional climate change impacts on agriculture, water resources, and hydrological extremes.
In addition to generating more accurate climatic input data, a reliable hydrological model is essential for simulating watershed hydrological processes. To tackle this challenge, the thesis presents an innovative multiobjective calibration framework integrating remote sensing vegetation data, baseflow index, discharge goodness-of-fit metrics, and flow duration curve signatures. In contrast to traditional calibration strategies relying solely on discharge goodness-of-fit metrics, this approach enhances the simulation of vegetation, streamflow, and the partitioning of flow into surface runoff and baseflow in a typical Andean catchment. The refined hydrological model calibration strategy was applied to conduct reliable simulations and understand current and future hydrological trajectories in the tropical Andes.
By establishing a region-suitable and thoroughly tested hydrological model with high-resolution and reliable precipitation input data from RAIN4PE, this study provides new insights into the spatiotemporal distribution of water balance components in Peru and transboundary catchments. Key findings underscore the estimation of Peru's total renewable freshwater resource (total river runoff of 62,399 m3/s), with the Peruvian Amazon basin contributing 97.7%. Within this basin, the Amazon-Andes transition region emerges as a pivotal hotspot for water yield (precipitation minus evapotranspiration), characterized by abundant rainfall and lower atmospheric water demand/evapotranspiration. This finding underlines its paramount role in influencing the hydrological variability of the entire Amazon basin.
Subsurface hydrological pathways, particularly baseflow from aquifers, strongly influence water yield in lowland and Andean catchments, sustaining streamflow, especially during the extended dry season. Water yield demonstrates an elevation- and latitude-dependent increase in the Pacific Basin (catchments draining into the Pacific Ocean), while it follows an unimodal curve in the Peruvian Amazon Basin, peaking in the Amazon-Andes transition region. This observation indicates an intricate relationship between water yield and elevation.
In Amazon lowlands rivers, particularly in the Ucayali River, floodplains play a significant role in shaping streamflow seasonality by attenuating and delaying peak flows for up to two months during periods of high discharge. This observation underscores the critical importance of incorporating floodplain dynamics into hydrological simulations and river management strategies for accurate modeling and effective water resource management.
Hydrological responses vary across different land use types in high Andean catchments. Pasture areas exhibit the highest water yield, while agricultural areas and mountain forests show lower yields, emphasizing the importance of puna (high-altitude) ecosystems, such as pastures, páramos, and bofedales, in regulating natural storage.
Projected future hydrological trajectories were analyzed by driving the hydrological model with regionalized GCM simulations provided by the BASD-CMIP6-PE dataset. The analysis considered sustainable (low warming, SSP1-2.6) and fossil fuel-based development (high-end warming, SSP5-8.5) scenarios for the mid (2035-2065) and end (2065-2095) of the century. The projected changes in water yield and streamflow across the tropical Andes exhibit distinct regional and seasonal variations, particularly amplified under a high-end warming scenario towards the end of the century. Projections suggest year-round increases in water yield and streamflow in the Andean regions and decreases in the Amazon lowlands, with exceptions such as the northern Amazon expecting increases during wet seasons. Despite these regional differences, the upper Amazon River's streamflow is projected to remain relatively stable throughout the 21st century. Additionally, projections anticipate a decrease in low flows in the Amazon lowlands and an increased risk of high flows (floods) in the Andean and northern Amazon catchments.
This thesis significantly contributes to enhancing climatic data generation, overcoming regional limitations that previously impeded hydrometeorological research, and creating new opportunities. It plays a crucial role in advancing hydrological model calibration, improving the representation of internal hydrological processes, and achieving accurate results for the right reasons. Novel insights into current hydrological dynamics in the tropical Andes are fundamental for improving water resource management. The anticipated intensified changes in water flows and hydrological extreme patterns under a high-end warming scenario highlight the urgency of implementing emissions mitigation and adaptation measures to address the heightened impacts on water resources.
In fact, the new datasets (RAIN4PE and BASD-CMIP6-PE) have already been utilized by researchers and experts in regional and local-scale projects and catchments in Peru and Ecuador. For instance, they have been applied in river catchments such as Mantaro, Piura, and San Pedro to analyze local historical and future developments in climate and water resources.
Prediction is often regarded as a central and domain-general aspect of cognition. This proposal extends to language, where predictive processing might enable the comprehension of rapidly unfolding input by anticipating upcoming words or their semantic features. To make these predictions, the brain needs to form a representation of the predictive patterns in the environment. Predictive processing theories suggest a continuous learning process that is driven by prediction errors, but much is still to be learned about this mechanism in language comprehension. This thesis therefore combined three electroencephalography (EEG) experiments to explore the relationship between prediction and implicit learning at the level of meaning.
Results from Study 1 support the assumption that the brain constantly infers und updates probabilistic representations of the semantic context, potentially across multiple levels of complexity. N400 and P600 brain potentials could be predicted by semantic surprise based on a probabilistic estimate of previous exposure and a more complex probability representation, respectively.
Subsequent work investigated the influence of prediction errors on the update of semantic predictions during sentence comprehension. In line with error-based learning, unexpected sentence continuations in Study 2 ¬– characterized by large N400 amplitudes ¬– were associated with increased implicit memory compared to expected continuations. Further, Study 3 indicates that prediction errors not only strengthen the representation of the unexpected word, but also update specific predictions made from the respective sentence context. The study additionally provides initial evidence that the amount of unpredicted information as reflected in N400 amplitudes drives this update of predictions, irrespective of the strength of the original incorrect prediction.
Together, these results support a central assumption of predictive processing theories: A probabilistic predictive representation at the level of meaning that is updated by prediction errors. They further propose the N400 ERP component as a possible learning signal. The results also emphasize the need for further research regarding the role of the late positive ERP components in error-based learning. The continuous error-based adaptation described in this thesis allows the brain to improve its predictive representation with the aim to make better predictions in the future.
Data preparation stands as a cornerstone in the landscape of data science workflows, commanding a significant portion—approximately 80%—of a data scientist's time. The extensive time consumption in data preparation is primarily attributed to the intricate challenge faced by data scientists in devising tailored solutions for downstream tasks. This complexity is further magnified by the inadequate availability of metadata, the often ad-hoc nature of preparation tasks, and the necessity for data scientists to grapple with a diverse range of sophisticated tools, each presenting its unique intricacies and demands for proficiency.
Previous research in data management has traditionally concentrated on preparing the content within columns and rows of a relational table, addressing tasks, such as string disambiguation, date standardization, or numeric value normalization, commonly referred to as data cleaning. This focus assumes a perfectly structured input table. Consequently, the mentioned data cleaning tasks can be effectively applied only after the table has been successfully loaded into the respective data cleaning environment, typically in the later stages of the data processing pipeline.
While current data cleaning tools are well-suited for relational tables, extensive data repositories frequently contain data stored in plain text files, such as CSV files, due to their adaptable standard. Consequently, these files often exhibit tables with a flexible layout of rows and columns, lacking a relational structure. This flexibility often results in data being distributed across cells in arbitrary positions, typically guided by user-specified formatting guidelines.
Effectively extracting and leveraging these tables in subsequent processing stages necessitates accurate parsing. This thesis emphasizes what we define as the “structure” of a data file—the fundamental characters within a file essential for parsing and comprehending its content. Concentrating on the initial stages of the data preprocessing pipeline, this thesis addresses two crucial aspects: comprehending the structural layout of a table within a raw data file and automatically identifying and rectifying any structural issues that might hinder its parsing. Although these issues may not directly impact the table's content, they pose significant challenges in parsing the table within the file.
Our initial contribution comprises an extensive survey of commercially available data preparation tools. This survey thoroughly examines their distinct features, the lacking features, and the necessity for preliminary data processing despite these tools. The primary goal is to elucidate the current state-of-the-art in data preparation systems while identifying areas for enhancement. Furthermore, the survey explores the encountered challenges in data preprocessing, emphasizing opportunities for future research and improvement.
Next, we propose a novel data preparation pipeline designed for detecting and correcting structural errors. The aim of this pipeline is to assist users at the initial preprocessing stage by ensuring the correct loading of their data into their preferred systems. Our approach begins by introducing SURAGH, an unsupervised system that utilizes a pattern-based method to identify dominant patterns within a file, independent of external information, such as data types, row structures, or schemata. By identifying deviations from the dominant pattern, it detects ill-formed rows. Subsequently, our structure correction system, TASHEEH, gathers the identified ill-formed rows along with dominant patterns and employs a novel pattern transformation algebra to automatically rectify errors. Our pipeline serves as an end-to-end solution, transforming a structurally broken CSV file into a well-formatted one, usually suitable for seamless loading.
Finally, we introduce MORPHER, a user-friendly GUI integrating the functionalities of both SURAGH and TASHEEH. This interface empowers users to access the pipeline's features through visual elements. Our extensive experiments demonstrate the effectiveness of our data preparation systems, requiring no user involvement. Both SURAGH and TASHEEH outperform existing state-of-the-art methods significantly in both precision and recall.
Due to their sessile lifestyle, plants are constantly exposed to pathogens and possess a multi-layered immune system that prevents infection. The first layer of immunity called pattern-triggered immunity (PTI), enables plants to recognise highly conserved molecules that are present in pathogens, resulting in immunity from non-adaptive pathogens. Adapted pathogens interfere with PTI, however the second layer of plant immunity can recognise these virulence factors resulting in a constant evolutionary battle between plant and pathogen. Xanthomonas campestris pv. vesicatoria (Xcv) is the causal agent of bacterial leaf spot disease in tomato and pepper plants. Like many Gram-negative bacteria, Xcv possesses a type-III secretion system, which it uses to translocate type-III effectors (T3E) into plant cells. Xcv has over 30 T3Es that interfere with the immune response of the host and are important for successful infection. One such effector is the Xanthomonas outer protein M (XopM) that shows no similarity to any other known protein. Characterisation of XopM and its role in virulence was the focus of this work.
While screening a tobacco cDNA library for potential host target proteins, the vesicle-associated membrane protein (VAMP)-associated protein 1-2 like (VAP12) was identified. The interaction between XopM and VAP12 was confirmed in the model species Nicotiana benthamiana and Arabidopsis as well as in tomato, a Xcv host. As plants possess multiple VAP proteins, it was determined that the interaction of XopM and VAP is isoform specific.
It could be confirmed that the major sperm protein (MSP) domain of NtVAP12 is sufficient for binding XopM and that binding can be disrupted by substituting one amino acid (T47) within this domain. Most VAP interactors have at least one FFAT (two phenylalanines [FF] in an acidic tract) related motif, screening the amino acid sequence of XopM showed that XopM has two FFAT-related motifs. Substitution of the second residue of each FFAT motif (Y61/F91) disrupts NtVAP12 binding, suggesting that these motifs cooperatively mediate this interaction. Structural modelling using AlphaFold further confirmed that the unstructured N-terminus of XopM binds NtVAP12 at its MSP domain, which was further confirmed by the generation of truncated XopM variants.
Infection of pepper leaves, with a XopM deficient Xcv strain did not result in a reduction of virulence in comparison to the Xcv wildtype, showing that the function of XopM during infection is redundant. Virus-induced gene silencing of NbVAP12 in N. benthamiana plants also did not affect Xcv virulence, which further indicated that interaction with VAP12 is also non-essential for Xcv virulence. Despite such findings, ectopic expression of wildtype XopM and XopMY61A/F91A in transgenic Arabidopsis seedlings enhanced the growth of a non-pathogenic Pseudomonas syringae pv. tomato (Pst) DC3000 strain. XopM was found to interfere with the PTI response allowing Pst growth independent of its binding to VAP. Furthermore, transiently expressed XopM could suppress reactive oxygen species (ROS; one of the earliest PTI responses) production in N. benthamiana leaves. The FFAT double mutant XopMY61A/F91A as well as the C-terminal truncation variant XopM106-519 could still suppress the ROS response while the N-terminal variant XopM1-105 did not. Suppression of ROS production is therefore independent of VAP binding. In addition, tagging the C-terminal variant of XopM with a nuclear localisation signal (NLS; NLS-XopM106-519) resulted in significantly higher ROS production than the membrane localising XopM106-519 variant, indicating that XopM-induced ROS suppression is localisation dependent.
To further characterise XopM, mass spectrometry techniques were used to identify post-translational modifications (PTM) and potential interaction partners. PTM analysis revealed that XopM contains up to 21 phosphorylation sites, which could influence VAP binding. Furthermore, proteins of the Rab family were identified as potential plant protein interaction partners. Rab proteins serve a multitude of functions including vesicle trafficking and have been previously identified as T3E host targets. Taking this into account, a model of virulence of XopM was proposed, with XopM anchoring itself to VAP proteins to potentially access plasma membrane associated proteins. XopM possibly interferes with vesicle trafficking, which in turn suppresses ROS production through an unknown mechanism.
In this work it was shown that XopM targets VAP proteins. The data collected suggests that this T3E uses VAP12 to anchor itself into the right place to carry out its function. While more work is needed to determine how XopM contributes to virulence of Xcv, this study sheds light onto how adapted pathogens overcome the immune response of their hosts. It is hoped that such knowledge will contribute to the development of crops resistant to Xcv in the future.
The order of destruction
(2024)
This book studies sugarcane monoculture, the dominant form of cultivation in the colonial Caribbean, in the later 1600s and 1700s up to the Haitian Revolution. Researching travel literature, plantation manuals, Georgic poetry, letters, and political proclamations, this book interprets texts by Richard Ligon, Henry Drax, James Grainger, Janet Schaw, and Toussaint Louverture. As the first extended investigation into its topic, this book reads colonial Caribbean monoculture as the conjunction of racial capitalism and agrarian capitalism in the tropics. Its eco-Marxist perspective highlights the dual exploitation of the soil and of enslaved agricultural producers under the plantation regime, thereby extending Marxist analysis to the early colonial Caribbean. By focusing on textual form (in literary and non-literary texts alike), this study discloses the bearing of monoculture on contemporary writers' thoughts. In the process, it emphasizes the significance of a literary tradition that, despite its ideological importance, is frequently neglected in (postcolonial) literary studies and the environmental humanities. Located at a crossroads of disciplines and perspectives, this study will be of interest to literary critics and historians working in the early Americas, to students and scholars of agriculture, colonialism, and (racial) capitalism, to those working in the environmental humanities, and to Marxist academics. It will be of great interest to scholars and researchers of language and literature, post-colonial studies, cultural studies, diaspora studies, and the Global South studies
Carbohydrates play a vital role in all living organisms; serving as a cornerstone in primary metabolism through the release of energy from their hydrolysis and subsequent re-utilization (Apriyanto et al., 2022). Starch is the principal carbohydrate reserve in plants, providing essential energy for plant growth. Furthermore, starch serves as a significant carbohydrate source in the human diet. Beyond its nutritional value, starch has extensive industrial application associated with many aspects of human society, such as feed, pharmacy, textiles, and the production of biodegradable plastics. Understanding the mechanisms underlying starch metabolism in plants carries multifaceted benefits. Not only does it contribute to increasing crop yield and refining grain quality, but also can improve the efficiency of industrial applications.
Starch in plants is categorized into two classes based on their location and function: transitory starch and storage starch. Transitory starch is produced in chloroplasts of autotrophic tissues/organs, such as leaves. It is synthesized during the day and degraded during the night. Storage starch is synthesized in heterotrophic tissues/organs, such as endosperm, roots and tubers, which is utilized for plant reproduction and industrial application in human life. Most studies aiming to comprehend starch metabolism of Arabidopsis thaliana primarily focus on transitory starch.
Starch is stored as granular form in chloroplast and amyloplast. The parameters of starch granules, including size, morphology, and quantity per chloroplast serve as indicators of starch metabolism status. However, the understanding of their regulatory mechanism is still incomplete. In this research, I initially employed a simple and adapted method based on laser confocal scanning microscopy (LCSM) to observe size, morphology and quantity of starch granules within chloroplasts in Arabidopsis thaliana in vivo. This method facilitated a rapid and versatile analysis of starch granule parameters across numerous samples. Utilizing this approach, I compared starch granule number per chloroplast between mesophyll cells and guard cells in both wild type plants (Col-0) and several starch related mutants. The results revealed that the granule number is distinct between mesophyll cells and guard cells, even within the same genetic background, suggesting that guard cells operate a unique regulatory mechanism of starch granule number.
Subsequently, I redirected my attention toward examining starch morphology. Through microscopy analyses, I observed a gradual alteration in starch granule morphology in certain mutants during leaf aging. Specifically, in mutants such as sex1-8 and dpe2phs1ss4, there was a progressive alteration in starch granule morphology over time. Conversely, in Col-0 and ss4 mutant, these morphological alterations were not evident. This discovery suggests a new perspective to understand the development of starch morphology.
Further investigation revealed that mutants lacking either Disproportionating enzyme 2 (DPE2) or MALTOSE-EXCESS 1 (MEX1) exhibited gradual alterations in starch morphology with leaf aging. Notably, the most severe effects on starch morphology occurred in double mutants lacking either DPE2 or MEX1 in conjunction with a lack of starch synthase 4 (SS4). In these mutations, a transformation of the starch granule morphology from the typical discoid morphology to oval and eventually to a spherical shape.
To investigate the changes in the internal structure of starch during this alteration, I analyzed the chain length distribution (CLD) of the amylopectin of young, intermediate and old leaves of the mutants. Throughout starch granule development, I found an increased presence of short glucan chains within the granules, particularly evident in dpe2ss4 and mex1ss4 mutants, as well as their parental single mutants. Notably, the single mutant ss4 also showed an affected granule morphology, albeit not influenced by leaf aging..
The CLD pattern of the amylopectin reflects an integrative regulation involving several participants in starch synthesis, including starch synthases (SSs), starch branching/debranching enzymes (SBEs/DBEs). Therefore, I further detected the expression of related genes on transcription level and the enzymatic activity of their respective proteins. Results indicated altered gene expression of several regulators in these mutants, particularly demonstrating dramatic alterations in dpe2 and dpe2ss4 with leaf aging. These changes corresponded with the observed alterations in starch granule morphology.
Taken together, I have identified and characterized a progressive alteration in starch granule morphology primarily resulting from the deficiencies in DPE2 and MEX1. Furthermore, I have associated the CLD pattern with the granule morphogenesis, as well as the gene expression and enzymatic activity of proteins involved in starch synthesis. Unlike SS4, which is implicated in starch initiation, MEX1 and DPE2 are involved into starch degradation. MEX1 is located in chloroplast envelope and DPE2 is situated in the cytosol. Considering the locations and known functions of DPE2/MEX1 and SS4, I infer that there might be two pathways influencing starch morphology: an initiation-affected pathway via SS4 and a degradation-affected pathway via DPE2/MEX1.
Massive stars (Mini > 8 Msol) are the key feedback agents within galaxies, as they shape their surroundings via their powerful winds, ionizing radiation, and explosive supernovae. Most massive stars are born in binary systems, where interactions with their companions significantly alter their evolution and the feedback they deposit in their host galaxy. Understanding binary evolution, particularly in the low-metallicity environments as proxies for the Early Universe, is crucial for interpreting the rest-frame ultraviolet spectra observed in high-redshift galaxies by telescopes like Hubble and James Webb.
This thesis aims to tackle this challenge by investigating in detail massive binaries within the low-metallicity environment of the Small Magellanic Cloud galaxy. From ultraviolet and multi-epoch optical spectroscopic data, we uncovered post-interaction binaries. To comprehensively characterize these binary systems, their stellar winds, and orbital parameters, we use a multifaceted approach. The Potsdam Wolf-Rayet stellar atmosphere code is employed to obtain the stellar and wind parameters of the stars. Additionally, we perform consistent light and radial velocity fitting with the Physics of Eclipsing Binaries software, allowing for the independent determination of orbital parameters and component masses. Finally, we utilize these results to challenge the standard picture of stellar evolution and improve our understanding of low-metallicity stellar populations by calculating our binary evolution models with the Modules for Experiments in Stellar Astrophysics code.
We discovered the first four O-type post-interaction binaries in the SMC (Chapters 2, 5, and 6). Their primary stars have temperatures similar to other OB stars and reside far from the helium zero-age main sequence, challenging the traditional view of binary evolution. Our stellar evolution models suggest this may be due to enhanced mixing after core-hydrogen burning. Furthermore, we discovered the so-far most massive binary system undergoing mass transfer (Chapter 3), offering a unique opportunity to test mass-transfer efficiency in extreme conditions. Our binary evolution calculations revealed unexpected evolutionary pathways for accreting stars in binaries, potentially providing the missing link to understanding the observed Wolf-Rayet population within the SMC (Chapter 4). The results presented in this thesis unveiled the properties of massive binaries at low-metallicity which challenge the way the spectra of high-redshift galaxies are currently being analyzed as well as our understanding of massive-star feedback within galaxies.
Astrophysical shocks, driven by explosive events such as supernovae, efficiently accelerate charged particles to relativistic energies. The majority of these shocks occur in collisionless plasmas where the energy transfer is dominated by particle-wave interactions.Strong nonrelativistic shocks found in supernova remnants are plausible sites of galactic cosmic ray production, and the observed emission indicates the presence of nonthermal electrons. To participate in the primary mechanism of energy gain - Diffusive Shock Acceleration - electrons must have a highly suprathermal energy, implying a need for very efficient pre-acceleration. This poorly understood aspect of the shock acceleration theory is known as the electron injection problem. Studying electron-scale phenomena requires the use of fully kinetic particle-in-cell (PIC) simulations, which describe collisionless plasma from first principles.
Most published studies consider a homogenous upstream medium, but turbulence is ubiquitous in astrophysical environments and is typically driven at magnetohydrodynamic scales, cascading down to kinetic scales. For the first time, I investigate how preexisting turbulence affects electron acceleration at nonrelativistic shocks using the fully kinetic approach. To accomplish this, I developed a novel simulation framework that allows the study of shocks propagating in turbulent media. It involves simulating slabs of turbulent plasma separately, which are further continuously inserted into a shock simulation. This demands matching of the plasma slabs at the interface. A new procedure of matching electromagnetic fields and currents prevents numerical transients, and the plasma evolves self-consistently. The versatility of this framework has the potential to render simulations more consistent with turbulent systems in various astrophysical environments.
In this Thesis, I present the results of 2D3V PIC simulations of high-Mach-number nonrelativistic shocks with preexisting compressive turbulence in an electron-ion plasma. The chosen amplitudes of the density fluctuations ($\lesssim15\%$) concord with \textit{in situ} measurements in the heliosphere and the local interstellar medium. I explored how these fluctuations impact the dynamics of upstream electrons, the driving of the plasma instabilities, electron heating and acceleration. My results indicate that while the presence of the turbulence enhances variations in the upstream magnetic field, their levels remain too low to influence the behavior of electrons at perpendicular shocks significantly. However, the situation is different at oblique shocks. The external magnetic field inclined at an angle between $50^\circ \lesssim \theta_\text{Bn} \lesssim 75^\circ$ relative to the shock normal allows the escape of fast electrons toward the upstream region. An extended electron foreshock region is formed, where these particles drive various instabilities. Results of an oblique shock with $\theta_\text{Bn}=60^\circ$ propagating in preexisting compressive turbulence show that the foreshock becomes significantly shorter, and the shock-reflected electrons have higher temperatures. Furthermore, the energy spectrum of downstream electrons shows a well-pronounced nonthermal tail that follows a power law with an index up to -2.3.
The methods and results presented in this Thesis could serve as a starting point for more realistic modeling of interactions between shocks and turbulence in plasmas from first principles.
Condensation and crystallization are omnipresent phenomena in nature. The formation of droplets or crystals on a solid surface are familiar processes which, beyond their scientific interest, are required in many technological applications. In recent years, experimental techniques have been developed which allow patterning a substrate with surface domains of molecular thickness, surface area in the mesoscopic scale, and different wettabilities (i.e., different degrees of preference for a substance that is in contact with the substrate). The existence of new patterned surfaces has led to increased theoretical efforts to understand wetting phenomena in such systems.
In this thesis, we deal with some problems related to the equilibrium of phases (e.g., liquid-vapor coexistence) and the kinetics of phase separation in the presence of chemically patterned surfaces. Two different cases are considered: (i) patterned surfaces in contact with liquid and vapor, and (ii) patterned surfaces in contact with a crystalline phase. One of the problems that we have studied is the following: It is widely believed that if air containing water vapor is cooled to its dew point, droplets of water are immediately formed. Although common experience seems to support this view, it is not correct. It is only when air is cooled well below its dew point that the phase transition occurs immediately. A vapor cooled slightly below its dew point is in a metastable state, meaning that the liquid phase is more stable than the vapor, but the formation of droplets requires some time to occur, which can be very long.
It was first pointed out by J. W. Gibbs that the metastability of a vapor depends on the energy necessary to form a nucleus (a droplet of a critical size). Droplets smaller than the critical size will tend to disappear, while droplets larger than the critical size will tend to grow. This is consistent with an energy barrier that has its maximum at the critical size, as is the case for droplets formed directly in the vapor or in contact with a chemically uniform planar wall. Classical nucleation theory describes the time evolution of the condensation in terms of the random process of droplet growth through this energy barrier. This process is activated by thermal fluctuations, which eventually will form a droplet of the critical size.
We consider nucleation of droplets from a vapor on a substrate patterned with easily wettable (lyophilic) circular domains. Under certain conditions of pressure and temperature, the condensation of a droplet on a lyophilic circular domain proceeds through a barrier with two maxima (a double barrier). We have extended classical nucleation theory to account for the kinetics of nucleation through a double barrier, and applied this extension to nucleation on lyophilic circular domains.
Genome-scale metabolic models are mathematical representations of all known reactions occurring in a cell. Combined with constraints based on physiological measurements, these models have been used to accurately predict metabolic fluxes and effects of perturbations (e.g. knock-outs) and to inform metabolic engineering strategies. Recently, protein-constrained models have been shown to increase predictive potential (especially in overflow metabolism), while alleviating the need for measurement of nutrient uptake rates. The resulting modelling frameworks quantify the upkeep cost of a certain metabolic flux as the minimum amount of enzyme required for catalysis. These improvements are based on the use of in vitro turnover numbers or in vivo apparent catalytic rates of enzymes for model parameterization. In this thesis several tools for the estimation and refinement of these parameters based on in vivo proteomics data of Escherichia coli, Saccharomyces cerevisiae, and Chlamydomonas reinhardtii have been developed and applied. The difference between in vitro and in vivo catalytic rate measures for the three microorganisms was systematically analyzed. The results for the facultatively heterotrophic microalga C. reinhardtii considerably expanded the apparent catalytic rate estimates for photosynthetic organisms. Our general finding pointed at a global reduction of enzyme efficiency in heterotrophy compared to other growth scenarios. Independent of the modelled organism, in vivo estimates were shown to improve accuracy of predictions of protein abundances compared to in vitro values for turnover numbers. To further improve the protein abundance predictions, machine learning models were trained that integrate features derived from protein-constrained modelling and codon usage. Combining the two types of features outperformed single feature models and yielded good prediction results without relying on experimental transcriptomic data. The presented work reports valuable advances in the prediction of enzyme allocation in unseen scenarios using protein constrained metabolic models. It marks the first successful application of this modelling framework in the biotechnological important taxon of green microalgae, substantially increasing our knowledge of the enzyme catalytic landscape of phototrophic microorganisms.
Organizations are investing billions on innovation and agility initiatives to stay competitive in their increasingly uncertain business environments. Design Thinking, an innovation approach based on human-centered exploration, ideation and experimentation, has gained increasing popularity. The market for Design Thinking, including software products and general services, is projected to reach 2.500 million $ (US-Dollar) by 2028. A dispersed set of positive outcomes have been attributed to Design Thinking. However, there is no clear understanding of what exactly comprises the impact of Design Thinking and how it is created. To support a billion-dollar market, it is essential to understand the value Design Thinking is bringing to organizations not only to justify large investments, but to continuously improve the approach and its application.
Following a qualitative research approach combined with results from a systematic literature review, the results presented in this dissertation offer a structured understanding of Design Thinking impact. The results are structured along two main perspectives of impact: the individual and the organizational perspective. First, insights from qualitative data analysis demonstrate that measuring and assessing the impact of Design Thinking is currently one central challenge for Design Thinking practitioners in organizations. Second, the interview data revealed several effects Design Thinking has on individuals, demonstrating how Design Thinking can impact boundary management behaviors and enable employees to craft their jobs more actively.
Contributing to innovation management research, the work presented in this dissertation systematically explains the Design Thinking impact, allowing other researchers to both locate and integrate their work better. The results of this research advance the theoretical rigor of Design Thinking impact research, offering multiple theoretical underpinnings explaining the variety of Design Thinking impact. Furthermore, this dissertation contains three specific propositions on how Design Thinking creates an impact: Design Thinking creates an impact through integration, enablement, and engagement. Integration refers to how Design Thinking enables organizations through effectively combining things, such as for example fostering balance between exploitation and exploration activities. Through Engagement, Design Thinking impacts organizations involving users and other relevant stakeholders in their work. Moreover, Design Thinking creates impact through Enablement, making it possible for individuals to enact a specific behavior or experience certain states.
By synthesizing multiple theoretical streams into these three overarching themes, the results of this research can help bridge disciplinary boundaries, for example between business, psychology and design, and enhance future collaborative research. Practitioners benefit from the results as multiple desirable outcomes are detailed in this thesis, such as successful individual job crafting behaviors, which can be expected from practicing Design Thinking. This allows practitioners to enact more evidence-based decision-making concerning Design Thinking implementation. Overall, considering multiple levels of impact as well as a broad range of theoretical underpinnings are paramount to understanding and fostering Design Thinking impact.
Plate tectonic boundaries constitute the suture zones between tectonic plates. They are shaped by a variety of distinct and interrelated processes and play a key role in geohazards and georesource formation. Many of these processes have been previously studied, while many others remain unaddressed or undiscovered. In this work, the geodynamic numerical modeling software ASPECT is applied to shed light on further process interactions at continental plate boundaries. In contrast to natural data, geodynamic modeling has the advantage that processes can be directly quantified and that all parameters can be analyzed over the entire evolution of a structure. Furthermore, processes and interactions can be singled out from complex settings because the modeler has full control over all of the parameters involved. To account for the simplifying character of models in general, I have chosen to study generic geological settings with a focus on the processes and interactions rather than precisely reconstructing a specific region of the Earth.
In Chapter 2, 2D models of continental rifts with different crustal thicknesses between 20 and 50 km and extension velocities in the range of 0.5-10 mm/yr are used to obtain a speed limit for the thermal steady-state assumption, commonly employed to address the temperature fields of continental rifts worldwide. Because the tectonic deformation from ongoing rifting outpaces heat conduction, the temperature field is not in equilibrium, but is characterized by a transient, tectonically-induced heat flow signal. As a result, I find that isotherm depths of the geodynamic evolution models are shallower than a temperature distribution in equilibrium would suggest. This is particularly important for deep isotherms and narrow rifts. In narrow rifts, the magnitude of the transient temperature signal limits a well-founded applicability of the thermal steady-state assumption to extension velocities of 0.5-2 mm/yr. Estimation of the crustal temperature field affects conclusions on all temperature-dependent processes ranging from mineral assemblages to the feasible exploitation of a geothermal reservoir.
In Chapter 3, I model the interactions of different rheologies with the kinematics of folding and faulting using the example of fault-propagation folds in the Andean fold-and-thrust belt. The evolution of the velocity fields from geodynamic models are compared with those from trishear models of the same structure. While the latter use only geometric and kinematic constraints of the main fault, the geodynamic models capture viscous, plastic, and elastic deformation in the entire model domain. I find that both models work equally well for early, and thus relatively simple stages of folding and faulting, while results differ for more complex situations where off-fault deformation and secondary faulting are present. As fault-propagation folds can play an important role in the formation of reservoirs, knowledge of fluid pathways, for example via fractures and faults, is crucial for their characterization.
Chapter 4 deals with a bending transform fault and the interconnections between tectonics and surface processes. In particular, the tectonic evolution of the Dead Sea Fault is addressed where a releasing bend forms the Dead Sea pull-apart basin, while a restraining bend further to the North resulted in the formation of the Lebanese mountains. I ran 3D coupled geodynamic and surface evolution models that included both types of bends in a single setup. I tested various randomized initial strain distributions, showing that basin asymmetry is a consequence of strain localization. Furthermore, by varying the surface process efficiency, I find that the deposition of sediment in the pull-apart basin not only controls basin depth, but also results in a crustal flow component that increases uplift at the restraining bend.
Finally, in Chapter 5, I present the computational basis for adding further complexity to plate boundary models in ASPECT with the implementation of earthquake-like behavior using the rate-and-state friction framework. Despite earthquakes happening on a relatively small time scale, there are many interactions between the seismic cycle and the long time spans of other geodynamic processes. Amongst others, the crustal state of stress as well as the presence of fluids or changes in temperature may alter the frictional behavior of a fault segment. My work provides the basis for a realistic setup of involved structures and processes, which is therefore important to obtain a meaningful estimate for earthquake hazards.
While these findings improve our understanding of continental plate boundaries, further development of geodynamic software may help to reveal even more processes and interactions in the future.
Mantodea, commonly known as mantids, have captivated researchers owing to their enigmatic behavior and ecological significance. This order comprises a diverse array of predatory insects, boasting over 2,400 species globally and inhabiting a wide spectrum of ecosystems. In Iran, the mantid fauna displays remarkable diversity, yet numerous facets of this fauna remain poorly understood, with a significant dearth of systematic and ecological research. This substantial knowledge gap underscores the pressing need for a comprehensive study to advance our understanding of Mantodea in Iran and its neighboring regions.
The principal objective of this investigation was to delve into the ecology and phylogeny of Mantodea within these areas. To accomplish this, our research efforts concentrated on three distinct genera within Iranian Mantodea. These genera were selected due to their limited existing knowledge base and feasibility for in-depth study. Our comprehensive methodology encompassed a multifaceted approach, integrating morphological analysis, molecular techniques, and ecological observations.
Our research encompassed a comprehensive revision of the genus Holaptilon, resulting in the description of four previously unknown species. This extensive effort substantially advanced our understanding of the ecological roles played by Holaptilon and refined its systematic classification. Furthermore, our investigation into Nilomantis floweri expanded its known distribution range to include Iran. By conducting thorough biological assessments, genetic analyses, and ecological niche modeling, we obtained invaluable insights into distribution patterns and genetic diversity within this species. Additionally, our research provided a thorough comprehension of the life cycle, behaviors, and ecological niche modeling of Blepharopsis mendica, shedding new light on the distinctive characteristics of this mantid species. Moreover, we contributed essential knowledge about parasitoids that infect mantid ootheca, laying the foundation for future studies aimed at uncovering the intricate mechanisms governing ecological and evolutionary interactions between parasitoids and Mantodea.