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During development in human erythrocytes, the malaria parasite Plasmodium falciparum internalizes a large part of the cellular content of the host cell. The internalized cytosol, consisting largely of hemoglobin, is transported to the parasite’s food vacuole where it is degraded, providing nutrients and space for growth. This host cell cytosol uptake (HCCU) is crucial for parasite survival but the parasite proteins mediating this process remain obscure. Here, we identify P. falciparum VPS45 as an essential factor in HCCU. Conditional inactivation of PfVPS45 led to an accumulation of host cell cytosol-filled vesicles within the parasite and inhibited the delivery of hemoglobin to the parasite's digestive vacuole, resulting in arrested parasite growth. A proportion of these HCCU vesicle intermediates was positive for phosphatidylinositol 3-phosphate, suggesting endosomal characteristics. Thus PfVPS45 provides insight into the elusive machinery of the ingestion pathway in a parasite that contains an endolysosomal system heavily repurposed for protein secretion.
Levy walks are continuous time random walks with spatio-temporal coupling of jump lengths and waiting times, often used to model superdiffusive spreading processes such as animals searching for food, tracer motion in weakly chaotic systems, or even the dynamics in quantum systems such as cold atoms. In the simplest version Levy walks move with a finite speed. Here, we present an extension of the Levy walk scenario for the case when external force fields influence the motion. The resulting motion is a combination of the response to the deterministic force acting on the particle, changing its velocity according to the principle of total energy conservation, and random velocity reversals governed by the distribution of waiting times. For the fact that the motion stays conservative, that is, on a constant energy surface, our scenario is fundamentally different from thermal motion in the same external potentials. In particular, we present results for the velocity and position distributions for single well potentials of different steepness. The observed dynamics with its continuous velocity changes enriches the theory of Levy walk processes and will be of use in a variety of systems, for which the particles are externally confined.
We review the evidence for a putative early 21st-century divergence between global mean surface temperature (GMST) and Coupled Model Intercomparison Project Phase 5 (CMIP5) projections. We provide a systematic comparison between temperatures and projections using historical versions of GMST products and historical versions of model projections that existed at the times when claims about a divergence were made. The comparisons are conducted with a variety of statistical techniques that correct for problems in previous work, including using continuous trends and a Monte Carlo approach to simulate internal variability. The results show that there is no robust statistical evidence for a divergence between models and observations. The impression of a divergence early in the 21st century was caused by various biases in model interpretation and in the observations, and was unsupported by robust statistics.
The presence of extreme horizontal branch (EHB) and blue hook stars in some Galactic globular clusters (GGCs) constitutes one of the remaining mysteries of stellar evolution. While several evolutionary scenarios have been proposed to explain the characteristics of this peculiar population of evolved stars, their observational verification has been limited by the availability of spectroscopic data for a statistically significant sample of such objects in any single GGC. We recently launched the SHOTGLAS project with the aim of providing a comprehensive picture of this intriguing stellar population in terms of spectroscopic properties for all readily accessible GGCs hosting an EHB. In this first paper, we focus on omega Cen, a peculiar, massive GGC that hosts multiple stellar populations. We use non-LTE model atmospheres to derive atmospheric parameters (Te ff, log g and N(He) / N(H)) and spectroscopic masses for 152 EHB stars in the cluster. This constitutes the largest spectroscopic sample of EHB stars ever analyzed in a GGC and represents similar to 20% of the EHB population of omega Cen. We also search for close binaries among these stars based on radial velocity variations. Our results show that the EHB population of omega Cen is divided into three spectroscopic groups that are very distinct in the Te ff helium abundance plane. The coolest sdB-type stars (Te ff. 30 000 K) have a hydrogen-rich atmosphere, populate the theoretical EHB region in the Te ff log g plane, and form 26% of our sample. The hottest sdO-type stars (Te ff & 42 000 K) make up 10% of the sample, have a hydrogen-rich atmosphere and are thought to be in a post-EHB evolutionary phase. The majority of our sample is found at intermediate temperatures and consists of sdOB stars that have roughly solar or super-solar atmospheric helium abundances. It is these objects that constitute the blue hook at V > 18 : 5 mag in the omega Cen color-magnitude diagram. Interestingly, the helium-enriched sdOBs do not have a significant counterpart population in the Galactic field, indicating that their formation is dependent on the particular environment found in omega Cen and other select GGCs. Another major di ff erence between the EHB stars in omega Cen and the field is the fraction of close binaries. From our radial velocity survey we identify two binary candidates, however no orbital solutions could be determined. We estimate an EHB close binary fraction of similar to 5% in omega Cen. This low fraction is in line with findings for other GGCs, but in sharp contrast to the situation in the field, where around 50% of the sdB stars reside in close binaries. Finally, the mass distribution derived is very similar for all three spectroscopic groups, however the average mass (0.38 M fi) is lower than that expected from stellar evolution theory. While this mass conundrum has previously been noted for EHB stars in omega Cen, it so far appears to be unique to that cluster.
Viscoelastic subdiffusion governed by a fractional Langevin equation is studied numerically in a random Gaussian environment modeled by stationary Gaussian potentials with decaying spatial correlations. This anomalous diffusion is archetypal for living cells, where cytoplasm is known to be viscoelastic and a spatial disorder also naturally emerges. We obtain some first important insights into it within a model one-dimensional study. Two basic types of potential correlations are studied: short-range exponentially decaying and algebraically slow decaying with an infinite correlation length, both for a moderate (several kBT, in the units of thermal energy), and strong (5–10kBT) disorder. For a moderate disorder, it is shown that on the ensemble level viscoelastic subdiffusion can easily overcome the medium's disorder. Asymptotically, it is not distinguishable from the disorder-free subdiffusion. However, a strong scatter in single-trajectory averages is nevertheless seen even for a moderate disorder. It features a weak ergodicity breaking, which occurs on a very long yet transient time scale. Furthermore, for a strong disorder, a very long transient regime of logarithmic, Sinai-type diffusion emerges. It can last longer and be faster in the absolute terms for weakly decaying correlations as compared with the short-range correlations. Residence time distributions in a finite spatial domain are of a generalized log-normal type and are reminiscent also of a stretched exponential distribution. They can be easily confused for power-law distributions in view of the observed weak ergodicity breaking. This suggests a revision of some experimental data and their interpretation.
This work reviews the literature on an alleged global warming 'pause' in global mean surface temperature (GMST) to determine how it has been defined, what time intervals are used to characterise it, what data are used to measure it, and what methods used to assess it. We test for 'pauses', both in the normally understood meaning of the term to mean no warming trend, as well as for a 'pause' defined as a substantially slower trend in GMST. The tests are carried out with the historical versions of GMST that existed for each pause-interval tested, and with current versions of each of the GMST datasets. The tests are conducted following the common (but questionable) practice of breaking the linear fit at the start of the trend interval ('broken' trends), and also with trends that are continuous with the data bordering the trend interval. We also compare results when appropriate allowance is made for the selection bias problem. The results show that there is little or no statistical evidence for a lack of trend or slower trend in GMST using either the historical data or the current data. The perception that there was a 'pause' in GMST was bolstered by earlier biases in the data in combination with incomplete statistical testing.
We analysed recent K2 data of the short-period eclipsing binary system HW Vir, which consists of a hot subdwarf-B type primary with an M-dwarf companion. We determined the mid-times of eclipses, calculated O-C diagrams, and an average shift of the secondary minimum. Our results show that the orbital period is stable within the errors over the course of the 70 days of observations. Interestingly, the offset from mid-orbital phase between the primary and the secondary eclipses is found to be 1.62 s. If the shift is explained solely by light-travel time, the mass of the sdB primary must be 0.26 M-circle dot, which is too low for the star to be core-helium burning. However, we argue that this result is unlikely to be correct and that a number of effects caused by the relative sizes of the stars conspire to reduce the effective light-travel time measurement. After removing the flux variation caused by the orbit, we calculated the amplitude spectrum to search for pulsations. The spectrum clearly shows periodic signal from close to the orbital frequency up to 4600 mu Hz, with the majority of peaks found below 2600 mu Hz. The amplitudes are below 0.1 part-per-thousand, too low to be detected with ground-based photometry. Thus, the high-precision data from the Kepler spacecraft has revealed that the primary of the HW Vir system is a pulsating sdBV star. We argue that the pulsation spectrum of the primary in HW Vir differs from that in other sdB stars due to its relatively fast rotation that is (nearly) phase-locked with the orbit.
In this paper we study the large deviations of time averaged mean square displacement (TAMSD) for Gaussian processes. The theory of large deviations is related to the exponential decay of probabilities of large fluctuations in random systems. From the mathematical point of view a given statistics satisfies the large deviation principle, if the probability that it belongs to a certain range decreases exponentially. The TAMSD is one of the main statistics used in the problem of anomalous diffusion detection. Applying the theory of generalized chi-squared distribution and sub-gamma random variables we prove the upper bound for large deviations of TAMSD for Gaussian processes. As a special case we consider fractional Brownian motion, one of the most popular models of anomalous diffusion. Moreover, we derive the upper bound for large deviations of the estimator for the anomalous diffusion exponent. (C) 2018 Elsevier B.V. All rights reserved.
Laboratory spectral measurements of relevant analogue materials were performed in the framework of the Rosetta mission in order to explain the surface spectral properties of comet 67P. Fine powders of coal, iron sulphides, silicates and their mixtures were prepared and their spectra measured in the Vis-IR range. These spectra are compared to a reference spectrum of 67P nucleus obtained with the VIRTIS/Rosetta instrument up to 2.7 mu m, excluding the organics band centred at 3.2 mu m. The species used are known to be chemical analogues for cometary materials which could be present at the surface of 67P. Grain sizes of the powders range from tens of nanometres to hundreds of micrometres. Some of the mixtures studied here actually reach the very low reflectance level observed by VIRTIS on 67P. The best match is provided by a mixture of sub-micron coal, pyrrhotite, and silicates. Grain sizes are in agreement with the sizes of the dust particles detected by the GIADA, MIDAS and COSIMA instruments on board Rosetta. The coal used in the experiment is responsible for the spectral slope in the visible and infrared ranges. Pyrrhotite, which is strongly absorbing, is responsible for the low albedo observed in the NIR. The darkest components dominate the spectra, especially within intimate mixtures. Depending on sample preparation, pyrrhotite can coat the coal and silicate aggregates. Such coating effects can affect the spectra as much as particle size. In contrast, silicates seem to play a minor role. (c) 2017 Elsevier Inc. All rights reserved.
We examine renewal processes with power-law waiting time distributions (WTDs) and non-zero drift via computing analytically and by computer simulations their ensemble and time averaged spreading characteristics. All possible values of the scaling exponent alpha are considered for the WTD psi(t) similar to 1/t(1+alpha). We treat continuous-time random walks (CTRWs) with 0 < alpha < 1 for which the mean waiting time diverges, and investigate the behaviour of the process for both ordinary and equilibrium CTRWs for 1 < alpha < 2 and alpha > 2. We demonstrate that in the presence of a drift CTRWs with alpha < 1 are ageing and non-ergodic in the sense of the non-equivalence of their ensemble and time averaged displacement characteristics in the limit of lag times much shorter than the trajectory length. In the sense of the equivalence of ensemble and time averages, CTRW processes with 1 < alpha < 2 are ergodic for the equilibrium and non-ergodic for the ordinary situation. Lastly, CTRW renewal processes with alpha > 2-both for the equilibrium and ordinary situation-are always ergodic. For the situations 1 < alpha < 2 and alpha > 2 the variance of the diffusion process, however, depends on the initial ensemble. For biased CTRWs with alpha > 1 we also investigate the behaviour of the ergodicity breaking parameter. In addition, we demonstrate that for biased CTRWs the Einstein relation is valid on the level of the ensemble and time averaged displacements, in the entire range of the WTD exponent alpha.
How ergodic is diffusion under harmonic confinements? How strongly do ensemble- and time-averaged displacements differ for a thermally-agitated particle performing confined motion for different initial conditions? We here study these questions for the generic Ornstein-Uhlenbeck (OU) process and derive the analytical expressions for the second and fourth moment. These quantifiers are particularly relevant for the increasing number of single-particle tracking experiments using optical traps. For a fixed starting position, we discuss the definitions underlying the ensemble averages. We also quantify effects of equilibrium and nonequilibrium initial particle distributions onto the relaxation properties and emerging nonequivalence of the ensemble- and time-averaged displacements (even in the limit of long trajectories). We derive analytical expressions for the ergodicity breaking parameter quantifying the amplitude scatter of individual time-averaged trajectories, both for equilibrium and outof-equilibrium initial particle positions, in the entire range of lag times. Our analytical predictions are in excellent agreement with results of computer simulations of the Langevin equation in a parabolic potential. We also examine the validity of the Einstein relation for the ensemble- and time-averaged moments of the OU-particle. Some physical systems, in which the relaxation and nonergodic features we unveiled may be observable, are discussed.
Intense C III] lambda lambda 1907,1909 emission from a strong Lyman continuum emitting galaxy
(2018)
We have obtained the first complete ultraviolet (UV) spectrum of a strong Lyman continuum (LyC) emitter at low redshift - the compact, low-metallicity, star-forming galaxy J1154+2443 - with a Lyman continuum escape fraction of 46% discovered recently. The Space Telescope Imaging Spectrograph spectrum shows strong Ly alpha and C III] lambda 1909 emission, as well as O III] lambda 1666. Our observations show that strong LyC emitters can have UV emission lines with a high equivalent width (e.g. EW(C III]) = 11.7 +/- 2.9 angstrom rest-frame), although their equivalent widths should be reduced due to the loss of ionizing photons. The intrinsic ionizing photon production efficiency of J1154+2443 is high, log(xi(0)(ion)) = 25.56 erg(-1) Hz, comparable to that of other recently discovered z similar to 0.3-0.4 LyC emitters. Combining our measurements and earlier determinations from the literature, we find a trend of increasing xi(0)(ion) with increasing C III] lambda 1909 equivalent width, which can be understood by a combination of decreasing stellar population age and metallicity. Simple ionization and density-bounded photoionization models can explain the main observational features including the UV spectrum of J1154+2443.
Modeling random crawling, membrane deformation and intracellular polarity of motile amoeboid cells
(2018)
Amoeboid movement is one of the most widespread forms of cell motility that plays a key role in numerous biological contexts. While many aspects of this process are well investigated, the large cell-to-cell variability in the motile characteristics of an otherwise uniform population remains an open question that was largely ignored by previous models. In this article, we present a mathematical model of amoeboid motility that combines noisy bistable kinetics with a dynamic phase field for the cell shape. To capture cell-to-cell variability, we introduce a single parameter for tuning the balance between polarity formation and intracellular noise. We compare numerical simulations of our model to experiments with the social amoeba Dictyostelium discoideum. Despite the simple structure of our model, we found close agreement with the experimental results for the center-of-mass motion as well as for the evolution of the cell shape and the overall intracellular patterns. We thus conjecture that the building blocks of our model capture essential features of amoeboid motility and may serve as a starting point for more detailed descriptions of cell motion in chemical gradients and confined environments.
We demonstrate a tilted pulse-front transient grating (TG) technique that allows to optimally utilize time resolution as well as TG line density while probing under grazing incidence as typically done in extreme ultraviolet (EUV) or soft x-ray (SXR) experiments. Our optical setup adapts the pulse front tilt of the two pulses that create the TG to the grazing incident pulse. We demonstrate the technique using all 800 nm femtosecond laser pulses for TG generation on a vanadium dioxide film. We probe that grating via diffraction of a third 800 nm pulse. The time resolution of 90 fs is an improvement by a factor of 30 compared to our previous experiments on the same system. The scheme paves the way for EUV and SXR probing of optically induced TGs on any material.
Observational studies have revealed that galaxy pairs tend to have lower gas-phase metallicity than isolated galaxies. This metallicity deficiency can be caused by inflows of low-metallicity gas due to the tidal forces and gravitational torques associated with galaxy mergers, diluting the metal content of the central region. In this work we demonstrate that such metallicity dilution occurs in state-of-the-art cosmological simulations of galaxy formation. We find that the dilution is typically 0.1 dex for major mergers, and is noticeable at projected separations smaller than 40 kpc. For minor mergers the metallicity dilution is still present, even though the amplitude is significantly smaller. Consistent with previous analysis of observed galaxies we find that mergers are outliers from the fundamental metallicity relation, with deviations being larger than expected for a Gaussian distribution of residuals. Our large sample of mergers within full cosmological simulations also makes it possible to estimate how the star formation rate enhancement and gas consumption timescale behave as a function of the merger mass ratio. We confirm that strong starbursts are likely to occur in major mergers, but they can also arise in minor mergers if more than two galaxies are participating in the interaction, a scenario that has largely been ignored in previous work based on idealised isolated merger simulations.
Improving network inference
(2018)
Background: A reliable inference of networks from data is of key interest in the Neurosciences. Several methods have been suggested in the literature to reliably determine links in a network. To decide about the presence of links, these techniques rely on statistical inference, typically controlling the number of false positives, paying little attention to false negatives. New method: In this paper, by means of a comprehensive simulation study, we analyse the influence of false positive and false negative conclusions about the presence or absence of links in a network on the network topology. We show that different values to balance false positive and false negative conclusions about links should be used in order to reliably estimate network characteristics. We propose to run careful simulation studies prior to making potentially erroneous conclusion about the network topology. Results: Our analysis shows that optimal values to balance false positive and false negative conclusions about links depend on the network topology and characteristic of interest. Comparison with existing methods: Existing methods rely on a choice of the rate for false positive conclusions. They aim to be sure about individual links rather than the entire network. The rate of false negative conclusions is typically not investigated. Conclusions: Our investigation shows that the balance of false positive and false negative conclusions about links in a network has to be tuned for any network topology that is to be estimated. Moreover, within the same network topology, the results are qualitatively the same for each network characteristic, but the actual values leading to reliable estimates of the characteristics are different.
Highly ionized metals as probes of the circumburst gas in the natal regions of gamma-ray bursts
(2018)
We present here a survey of high-ionization absorption lines in the afterglow spectra of long-duration gamma-ray bursts (GRBs) obtained with the VLT/X-shooter spectrograph. Our main goal is to investigate the circumburst medium in the natal regions of GRBs. Our primary focus is on the N vλλ 1238, 1242 line transitions, but we also discuss other high-ionization lines such as O vi, C iv, and Si iv. We find no correlation between the column density of N v and the neutral gas properties such as metallicity, H i column density, and dust depletion; however, the relative velocity of N v, typically a blueshift with respect to the neutral gas, is found to be correlated with the column density of H i. This may be explained if the N v gas is part of an H ii region hosting the GRB, where the region’s expansion is confined by dense, neutral gas in the GRB’s host galaxy. We find tentative evidence (at 2σ significance) that the X-ray derived column density, NH, X, may be correlated with the column density of N v, which would indicate that both measurements are sensitive to the column density of the gas located in the vicinity of the GRB. We investigate the scenario where N v (and also O vi) is produced by recombination after the corresponding atoms have been stripped entirely of their electrons by the initial prompt emission, in contrast to previous models where highly ionized gas is produced by photoionization from the GRB afterglow.
The transport of cosmic rays (CRs) is crucial for the understanding of almost all high-energy phenomena. Both pre-existing large-scale magnetohydrodynamic (MHD) turbulence and locally generated turbulence through plasma instabilities are important for the CR propagation in astrophysical media. The potential role of the resonant instability triggered by CR pressure anisotropy to regulate the parallel spatial diffusion of low-energy CRs (less than or similar to 100 GeV) in the interstellar and intracluster medium of galaxies has been shown in previous theoretical works. This work aims to study the gyroresonance instability via direct numerical simulations, in order to access quantitatively the wave-particle scattering rates. For this, we employ a 1D PIC-MHD code to follow the growth and saturation of the gyroresonance instability. We extract from the simulations the pitch-angle diffusion coefficient D-mu mu produced by the instability during the linear and saturation phases, and a very good agreement (within a factor of 3) is found with the values predicted by the quasi-linear theory (QLT). Our results support the applicability of the QLT for modelling the scattering of low-energy CRs by the gyroresonance instability in the complex interplay between this instability and the large-scale MHD turbulence.
The development of cheap and efficient electrocatalysts for the oxygen reduction reaction (ORR) is vital for the immediate commercialization of fuel cells which are still limited by the high cost and low performance of the utilized commercial Pt-based electrodes. As a promising alternative, this study reports on the synthesis of hierarchical iron-doped silver lotus flowers (AgFelotus) by a facile chemical procedure as robust and efficient ORR electrocatalysts. Succinic acid was used as a structure directing agent to tune the morphology of undoped and iron-doped silver particles. In the absence of succinic acid, ball-like silver particles were obtained, while using 2 mM succinic acid led to peony-like flower structures. The doping of silver peony-flowers with iron resulted in lotus-like flower structures with high electrocatalytic activity for ORR together with outstanding tolerance against poisoning with various hydrocarbon (HC) impurities, in situ generated during fuel cell operation, as well as different fuels from anodic crossover. AgFelotus exhibited a superior ORR activity with more than 40 times higher stability than the commercial Pt/C catalyst in alkaline media. This substantial performance enhancement is attributed to the unique lotus-like flower structures providing more electroactive surface sites, in addition to the iron dopants which facilitate ORR charge transfer.
Unipolar, axisymmetric sunspots are figuratively called “theoretician's sunspots” because their simplicity supposedly makes them more suitable for theoretical descriptions or numerical models. On November 18, 2013, a very large specimen (active region NOAA 11899) crossed the central meridian of the sun. The moat flow associated with this very large spot is quantitatively compared to that of a medium and a small sunspot to determine the extent of the moat flow in different environments. We employ continuum images and magnetograms of the Helioseismic and Magnetic Imager (HMI) as well as extreme ultraviolet (EUV) images at λ160 nm of the Atmospheric Imaging Assembly (AIA), both on board the Solar Dynamics Observatory (SDO), to measure horizontal proper motions with Local Correlation Tracking (LCT) and flux transport velocities with the Differential Affine Velocity Estimator (DAVE). We compute time-averaged flow maps (±6 hr around meridian passage) and radial averages of photometric, magnetic, and flow properties. Flow fields of a small- and a medium-sized axisymmetric sunspot provide the context for interpreting the results. All sunspots show outward moat flow and the advection of moving magnetic features (MMFs). However, the extent of the moat flow varies from spot to spot, and a correlation of flow properties with size is tenuous, if at all present. The moat flow is asymmetric and predominantly in the east–west direction, whereby deviations are related to the tilt angle of the sunspot group as well as to the topology and activity level of the trailing plage.