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Equilibria between the Z (tau(1) = 0 degrees) and E (tau(1) = 180 degrees) conformers of p-substituted phenyl acetates 4 and trifluoroacetates 5 (X = OMe, Me, H, Cl, CN, NO2) were studied by ab initio calculations at the HF/6-31G* and MP2/6-31G* levels of theory. The preference for the Z conformer, Delta E(HF), was calculated to be 5.36 kcal mol(-1) and 7.50 kcal mot(-1) for phenyl acetate and phenyl trifluoroacetate (i.e., with X = H), respectively. The increasing electron-withdrawing ability of the phenyl substituent X increases the preference of the Z conformer. An excellent correlation with a negative slope was observed for both series between Delta E of the E-Z equilibrium and the Hammett sigma constant. By using an appropriate isodesmic reaction, it was shown that electron-withdrawing substituents decrease the stability of both conformers, but the effect is higher with the E conformer. Electron-withdrawing phenyl substituents decrease the delocalization of the lone pair of the ether oxygen to the C=O antibonding orbital (n(O) -> pi*(C=O)) in both the E and Z forms and in both series studied; this effect is higher in the E conformer than in the Z conformer. The n(O) -> pi*(C=O) electron donation has a minimum value with tau(1) = 90 degrees and a maximum value with tau(1) = 90 degrees (the Z conformer), the value with tau(1) = 180 degrees (the E conformer) being between these two values, obviously due to steric hindrance. The effects of the phenyl substituents on the reactivity of the esters studied are discussed in terms of molecular orbital interactions. ED/EW substituents adjust the availability of the pi*(C=O) antibonding orbital to interact with the lone pair orbital of the attacking nucleophile and therefore affect the reactivity: EW substituents increase and ED substituents decrease it. Excellent correlations were observed between the rate coefficients of nucleophilic acyl substitutions and pi*(C=O) occupancies of the ester series 4 and
We apply the multiconfiguration time-dependent Hartree-Fock method to electronic structure calculations and show that quantum chemical information can be obtained with this explicitly time-dependent approach. Different equations of motion are discussed, as well as the numerical cost. The two-electron integrals are calculated using a natural potential expansion, of which we describe the convergence behavior in detail
In this article we report about a successful application of modern machine learning technology, namely Support Vector Machines, to the problem of assessing the 'drug-likeness' of a chemical from a given set of descriptors of the Substance. We were able to drastically improve the recent result by Byvatov et al. (2003) on this task and achieved an error rate of about 7% on unseen compounds using Support Vector Machines. We see a very high potential of such machine learning techniques for a variety of computational chemistry problems that occur in the drug discovery and drug design process
A series of nonionic, anionic, and cationic water-soluble monomers bearing the (meth)acrylate, (meth)acrylamide, or styrene moiety were polymerized in water by free-radical polymerization via reversible addition- fragmentation chain transfer (RAFT). Several new water-soluble RAFT agents based on dithiobenzoate were employed that are water soluble independently of the pH. One of them bears a fluorophore, enabling unsymmetrical double end-group labeling as well as the preparation of fluorescent-labeled polymers. The temperature-dependent stability of the new RAFT agents against hydrolysis was studied. Controlled polymerization in aqueous solution was possible with styrenic, acrylic, and methacrylic monomers; molar masses increase with conversion, and polydispersities are relatively low. But RAFT polymerization failed for an anionic itaconate. Whereas polymerizations of methacrylamides were slow at temperatures below 60 degrees C, such conditions proved favorable for the RAFT polymerization of acrylates and methacrylates, to minimize hydrolysis of the dithioester end-group functionality, and to improve the preparation of block copolymers
A series of RAFT agents was synthesised, and used to prepare various ionic. non-ionic and zwitterionic water- soluble polymers, in organic as well as in aqueous media. The RAFT process proved to be a powerful method to prepare functional polymers of complex structure. such as amphiphilic diblock and triblock copolymers. This includes polymers containing one or even two stimuli-sensitive hydrophilic blocks. Switching the hydrophilic character of a single or of several blocks by changing the PH, the temperature or the salt content demonstrated the variability of the molecular designs suited for stimuli-sensitive polymeric amphiphiles, and exemplified the concept of multiple-sensitive systems. (c) 2005 Published by Elsevier Ltd
Multicompartment micelles are complex nanosized systems that possess a hydrosoluble shell and a hydrophobic core, which is characterized by segregated incompatible subdomains. With roots starting about ten years ago, the field of multi compartment micelles has evolved slowly, until recently when significant achievements have been made. The present article reviews strategies for building such micellar assemblies as well as morphological studies, highlights the future challenges, and discusses possible applications, which exploit the coexistence of differentiated nano- domains. Formation of multi compartment micelles using miktoarm stars mu-(polyethylethylene)(poly(ethylene oxide))(poly(perfluoropropylene oxide)) and a cryo-TEM image visualizing the process
Absorption and fluorescence properties of 4 hydraulic oils ( 3 biological and 1 petroleum-based) were investigated. In-situ LIF (laser-induced fluorescence) analysis of the oils on a brown sandy loam soil was performed. With calibration, quantitative detection was achieved. Estimated limits of detection were below ca. 500 mg/kg for the petroleum-based oil and ca. 2000 mg/kg for one biological oil. A semi-quantitative classification scheme is proposed for monitoring of the biological oils. This approach was applied to investigate the migration of a biological oil in soil- containing compartments, namely a soil column and a soil bed
Three series of new oligomeric cationic surfactants were synthesized. These amphiphiles are trimeric and tetrameric oligomeric quaternary ammonium chlorides, with spacer groups of different lengths separating the individual surfactant fragments. The properties of the compounds, such as Krafft temperatures, surface activity, micellization, viscosifying effects, foaming and solubilizing capacity, are studied. The influence of the degree of oligomerization and of the spacer group on the surfactant properties is discussed, in comparison with the analogous standard monomeric and dimeric ("gemini") surfactants. Typically, the evolution of the properties observed from standard to dimeric surfactants progresses with the trimers and tetramers, resulting for instance in extremely low critical micellization concentrations
A series of dimeric cationic surfactants (gemini surfactants), which have spacer groups of varying length and flexibility, was synthesized. The series is derived from the parent compounds dodecyltrimethylammonium chloride or benzyldodecyldimethylammonium chloride. Characteristic surfactant properties of the dimeric ammonium compounds such as surface activity, micellization, viscosity effects, foaming, and solubilization, were studied with respect to the influence of the spacer group on the surfactant. For all properties, the influence of the length of the spacer group was predominant though the chemical nature of the spacer cannot be neglected
A series of terbium- and europium-exchanged microporous-mesoporous zeolite Socony Mobil Five (MFI)-type materials such as Zeotile-1 and Zeogrid with varying Si/Al ratios was investigated using FTIR, PXRD, adsorption- desorption isotherms of N-2 at 77 K and time-resolved luminescence spectroscopy. Silylation of the lanthanides-exchanged Zeotile-1 and Zeogrid with hexadecyl trimethoxysilanes via post-synthesis grafting was also studied. The results showed that the lanthanide's photoluminescence spectra and decays were modified due to silylation. The different silylation effects in Zeotile-1 and Zeogrid were correlated with the textural properties of the investigated materials. (C) 2007 Elsevier B.V. All rights reserved.
We report simulations of laser-driven many-electron dynamics by means of the time-dependent configuration interaction singles (doubles) approach. The method accounts for the correlation of ground and excited states, is capable of describing explicitly time-dependent, nonlinear phenomena, and is systematically improvable. Lithium cyanide serves as a molecular test system in which the charge distribution and hence the dipole moment are shown to be switchable, in a controlled fashion, by (a series of) laser pulses which induce selective, state-to-state electronic transitions. One focus of our time-dependent calculations is the question of how fast the transition from the ionic ground state to a specific excited state that is embedded in a multitude of other states can be made, without creating an electronic wave packet. (c) 2005 American Institute of Physics
[GRAPHICS] Amino-substituted thio(seleno)acrylamides 1-4 were synthesized and their H-1 and C-13 NMR spectra assigned. Both the NMR data and the results of theoretical calculations at the ab initio level of theory were employed to elucidate the adopted structures of the compounds in terms of E/Z isomerism and s-cis/s-trans configuration. In the case of the asymmetrically N(Me)Ph-substituted compounds, ab initio GIAO-calculated ring current effects of the N-phenyl group were applied to successfully determine the preferred conformer bias. The restricted rotations about the two C-N partial double bonds were studied by DNMR and the barriers to rotation (Delta G(c)(double dagger)) determined at the coalescence temperatures, and these were discussed with respect to the structural differences between the compounds. The barriers to rotation were also calculated at the ab initio level of theory where the best results (R-2 = 0.8746) were obtained only with inclusion of the solvent at the SCIPCMHF/6-31G* level of theory. The calculations also provided means of assessing structural influences which were not available due to inaccessible rotation barriers. By means of natural bond orbital (NBO) analysis of 1-4, the occupation numbers of nitrogen lone pairs and bonding/antibonding pi/pi* orbitals were shown to quantitatively describe thio(seleno)amide/vinylogous thio(seleno)amide "resonance". Finally, the thio(seleno)carbonyl anisotropic effect was quantitatively calculated by the GIRO method and visualized by isochemical shielding surfaces (ICSS). Only marginal differences between the two anisotropic effects were calculated and are therefore of questionable utility for previous and future applications with respect to stereochemical assignments
The quotient of the occupation numbers of pi bonding and pi* antibonding orbitals of the central C=C partial double bond, pi*(C=C)/pi(C=C), proved to be a useful parameter to quantify the push-pull effect completely for the first time in substituted alkenes by examination of a comprehensive set of compounds. (c) 2005 Elsevier Ltd. All rights reserved
Conformational equilibria for a number of methyl substituted 1,3-dioxanes 1, 1,3-oxathianes 2 and 1,3-dithianes 3 were calculated at the HF and DFT levels of theory. In addition to the chair conformers also the energetically adjacent twist conformers were considered and the positions of the corresponding conformational equilibria estimated. On the basis of the global energy minima of conformers, participating in the conformational equilibria, the 1J(C,Hax,equ) coupling constants were calculated using the GIAO method and compared with the experimental values obtained from C-13, H- 1 coupled C-13 NMR spectra. The Perlin effect, the influence of the solvent and the suitability of this NMR parameter for assigning the conformational equilibria present are critically discussed. (c) 2005 Elsevier Ltd. All rights reserved
Two different approaches. with an unsaturated carbohydrate as a radical acceptor and a carbohydrate derived aldehyde as a radical precursor, led to key intermediates in the synthesis of 3-deoxy-D-oct-2-ulosonic acids (KDO). Manganese(III) acetate and cerium(IV) ammonium nitrate were the reagents of choice for the oxidative generation of radicals, whereas samarium(II) iodide was employed for reductive couplings. Both strategies were realized by using easily available starting materials, with acetic acid as C-2 and ethyl acrylate as C-3 building blocks, respectively
The surface shear viscosity of a myelin mimetic Langmuir monolayer is investigated upon adsorption of myelin basic protein (MBP). We measure an increase of the surface shear viscosity at picomolar concentrations of the protein, suggesting that the globular conformation of MBP changes upon adsorption at the monolayer. The conformational change enables hydrodynamic interactions of the proteins, with a typical separation of hundreds of nanometers. This unfolding is essential for the compactification of the myelin sheath, serving an enhanced saltatory signal transduction in vertebrates. The viscometry used extends the sensitivity of standard surface viscometers toward lower viscosities
The configuration and dynamic behavior of O-allyl-S-methyl-N-(acridin-9-yl)iminothiocarbonate (1) and its S- allyl-O-methyl regioisomer (2) were studied using quantum chemical calculations and by applying a novel graphical method to scatter maps obtained from MD simulations for evaluation of an NOE-weighted internuclear distance (r(NOE)). Energy calculations indicated that the Z configuration was predominant for each compound and, further, this was supported both by the calculated chemical shifts and the rNOE. Both N-inversion- and rotation-type transition-state structures were also calculated for the E/Z isomerization process, the results indicating that the preferred interconversion mechanism for 1 is N-inversion, but contrastingly, interconversion via rotation is equally as probable as N-inversion for 2. This supports the notion that one or the other or both pathways can be active and each system needs to be assessed on a case- by-case basis. Copyright (c) 2005 John Wiley & Sons, Ltd
In this paper we report dynamical simulations of laser-driven, coupled nuclear-electron dynamics for a molecule- surface system. Specifically, the laser desorption of a small molecule (NO) from a metal slab (Pt) in the so-called DIET limit (Desorption Induced by Electronic Transitions), is studied. The excitation of the metal electrons by a laser pulse followed by the formation of a negative ion resonance, its subsequent decay, and the simultaneous desorption of the molecule are all treated within a single quantum mechanical model. This model is based on an earlier theory of Harris and others [S. M. Harris, S. Holloway, and G. R. Darling, J. Chem. Phys. 102, 8235 (1995)], according to which a nuclear degree of freedom is coupled to an electronic one, both propagated on a single non-Born-Oppenheimer potential energy surface. The goals of the present contribution are (i) to make a conceptual connection of this model to the frequently adopted nonadiabatic "multi-state" models of photodesorption, (ii) to understand details of the desorption mechanism, (iii) to explicitly account for the laser pulse, and (iv) to study the photodesorption as a function of the thickness of the metal film, and the laser parameters. As an important methodological aspect we also present a highly efficient numerical scheme to propagate the wave packet in a problem-adapted diabatic basis
The synthesis of a series of 1H-pyrazolo[3,4-b]quinoxalines (flavazoles) by acylation, alkylation, halogenation, and aminomethylation of the parent compound is reported and their structure is investigated by H-1, C-13 and N-15 NMR spectroscopy. The restricted rotation about the partial C, N double bond of the N-acyl derivatives 7-10 is studied by dynamic NMR spectroscopy and the barriers to rotation are determined. In order to assign unequivocally the 15 N chemical shifts of N-4 and N-9, in case of 3-substituted flavazoles, exemplary the H-1, C-13, and N-15 NMR chemical shifts of 34, 35, and 39 are also theoretically calculated by quantum chemical methods [ab initio at different levels of theory (HF/6-3G* and B3LYP/6-31G*)]. (C) 2005 Elsevier Ltd. All rights reserved