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Relationships between climate, species composition, and species richness are of particular importance for understanding how boreal ecosystems will respond to ongoing climate change. This study aims to reconstruct changes in terrestrial vegetation composition and taxa richness during the glacial Late Pleistocene and the interglacial Holocene in the sparsely studied southeastern Yakutia (Siberia) by using pollen and sedimentary ancient DNA (sedaDNA) records. Pollen and sedaDNA metabarcoding data using the trnL g and h markers were obtained from a sediment core from Lake Bolshoe Toko. Both proxies were used to reconstruct the vegetation composition, while metabarcoding data were also used to investigate changes in plant taxa richness. The combination of pollen and sedaDNA approaches allows a robust estimation of regional and local past terrestrial vegetation composition around Bolshoe Toko during the last similar to 35,000 years. Both proxies suggest that during the Late Pleistocene, southeastern Siberia was covered by open steppe-tundra dominated by graminoids and forbs with patches of shrubs, confirming that steppe-tundra extended far south in Siberia. Both proxies show disturbance at the transition between the Late Pleistocene and the Holocene suggesting a period with scarce vegetation, changes in the hydrochemical conditions in the lake, and in sedimentation rates. Both proxies document drastic changes in vegetation composition in the early Holocene with an increased number of trees and shrubs and the appearance of new tree taxa in the lake's vicinity. The sedaDNA method suggests that the Late Pleistocene steppe-tundra vegetation supported a higher number of terrestrial plant taxa than the forested Holocene. This could be explained, for example, by the "keystone herbivore" hypothesis, which suggests that Late Pleistocene megaherbivores were able to maintain a high plant diversity. This is discussed in the light of the data with the broadly accepted species-area hypothesis as steppe-tundra covered such an extensive area during the Late Pleistocene.
Thermokarst lakes are assumed to develop cyclically, driven by processes that are triggered by climate and maintained by internal feedbacks that may trigger lake drainage. However, the duration of these cycles remains uncertain, as well as whether or not they affect the stabilization of lake ecosystems in permafrost regions over millennial time scales. Our research has combined investigations into modern lake-to-lake variability with a study of the long-term development of individual lakes. We have investigated the physico-chemical and diatom compositions of a set of 101 lakes with a variety of different origins in central Yakutia (Eastern Siberia), including thermokarst lakes, fluvial-erosion thermokarst lakes, fluvial-erosion lakes, and dune lakes. We found a significant relationship between lake genesis and the present-day variability in environmental and diatom characteristics, as revealed by multi-response permutation procedures, indicator species analyses, and redundancy analyses. Environmental parameters also exhibit a significant correlation with variations in the diatom data, for which they may have been to a substantial extent responsible. Mg and SO4 concentrations, together with pH and water depth, were identified as the most important parameters, influencing the variations in the diatom data almost as much as the entire environmental parameter set. We were therefore able to establish a robust Mg-diatom transfer function, which was then applied to three Holocene lake records. From these reconstructions, together with a general interpretation of the diatom record (including, e.g., the ratio between benthic/epiphytic and planktonic taxa), we have been able to infer that all three of these lakes show (1) a continuous record with no desiccation events, (2) high lake water-levels during the early Holocene, (3) centennial to millennial scale variability, and (4) high levels of variability during the early Holocene but rather stable conditions during the late Holocene (a feature that is also known from other sites around the world). We therefore concluded that the development of these three lakes was mainly driven directly by the climate, rather than by thaw lake cycling.