Refine
Year of publication
- 2016 (1203) (remove)
Document Type
- Article (1203) (remove)
Language
- English (1203) (remove)
Keywords
- Magellanic Clouds (8)
- German (7)
- Eye movements (6)
- Sun: magnetic fields (6)
- climate change (6)
- intergalactic medium (6)
- methods: data analysis (6)
- techniques: spectroscopic (6)
- children (5)
- galaxies: formation (5)
Institute
- Institut für Geowissenschaften (216)
- Institut für Physik und Astronomie (201)
- Institut für Biochemie und Biologie (190)
- Institut für Chemie (155)
- Institut für Ernährungswissenschaft (49)
- Institut für Mathematik (48)
- Department Psychologie (41)
- Department Linguistik (30)
- Wirtschaftswissenschaften (27)
- Sozialwissenschaften (16)
Measures for interoperability of phenotypic data: minimum information requirements and formatting
(2016)
Background: Plant phenotypic data shrouds a wealth of information which, when accurately analysed and linked to other data types, brings to light the knowledge about the mechanisms of life. As phenotyping is a field of research comprising manifold, diverse and time-consuming experiments, the findings can be fostered by reusing and combining existing datasets. Their correct interpretation, and thus replicability, comparability and interoperability, is possible provided that the collected observations are equipped with an adequate set of metadata. So far there have been no common standards governing phenotypic data description, which hampered data exchange and reuse. Results: In this paper we propose the guidelines for proper handling of the information about plant phenotyping experiments, in terms of both the recommended content of the description and its formatting. We provide a document called "Minimum Information About a Plant Phenotyping Experiment", which specifies what information about each experiment should be given, and a Phenotyping Configuration for the ISA-Tab format, which allows to practically organise this information within a dataset. We provide examples of ISA-Tab-formatted phenotypic data, and a general description of a few systems where the recommendations have been implemented. Conclusions: Acceptance of the rules described in this paper by the plant phenotyping community will help to achieve findable, accessible, interoperable and reusable data.
The Proteasome Acts as a Hub for Plant Immunity and Is Targeted by Pseudomonas Type III Effectors
(2016)
Recent evidence suggests that the ubiquitin-proteasome system is involved in several aspects of plant immunity and that a range of plant pathogens subvert the ubiquitin-proteasome system to enhance their virulence. Here, we show that proteasome activity is strongly induced during basal defense in Arabidopsis (Arabidopsis thaliana). Mutant lines of the proteasome subunits RPT2a and RPN12a support increased bacterial growth of virulent Pseudomonas syringae pv tomato DC3000 (Pst) and Pseudomonas syringae pv maculicola ES4326. Both proteasome subunits are required for pathogen-associated molecular pattern-triggered immunity responses. Analysis of bacterial growth after a secondary infection of systemic leaves revealed that the establishment of systemic acquired resistance (SAR) is impaired in proteasome mutants, suggesting that the proteasome also plays an important role in defense priming and SAR. In addition, we show that Pst inhibits proteasome activity in a type III secretion-dependent manner. A screen for type III effector proteins from Pst for their ability to interfere with proteasome activity revealed HopM1, HopAO1, HopA1, and HopG1 as putative proteasome inhibitors. Biochemical characterization of HopM1 by mass spectrometry indicates that HopM1 interacts with several E3 ubiquitin ligases and proteasome subunits. This supports the hypothesis that HopM1 associates with the proteasome, leading to its inhibition. Thus, the proteasome is an essential component of pathogen-associated molecular pattern-triggered immunity and SAR, which is targeted by multiple bacterial effectors.
This book offers a clear, critical, and comprehensive overview of theoretical and experimental work on information structure. Different chapters examine the main theories of information structure in syntax, phonology, and semantics as well as perspectives from psycholinguistics and other relevant fields. Following the editors’ introduction the book is divided into four parts. The first, on theories of and theoretical perspectives on information structure, includes chapters on topic, prosody, and implicature. Part II covers a range of current issues in the field, including focus, quantification, and sign languages, while Part III is concerned with experimental approaches to information structure, including processes involved in its acquisition and comprehension. The final part contains a series of linguistic case studies drawn from a wide variety of the world’s language families