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The lakes in the Kenyan Rift Valley offer the unique opportunity to study a wide range of hydrochemical environmental conditions, ranging from freshwater to highly saline and alkaline lakes. Because little is known about the hydro- and biogeochemical conditions in the underlying lake sediments, it was the aim of this study to extend the already existing data sets with data from porewater and biomarker analyses. Additionally, reduced sulphur compounds and sulphate reduction rates in the sediment were determined. The new data was used to examine the anthropogenic and microbial influence on the lakes sediments as well as the influence of the water chemistry on the degradation and preservation of organic matter in the sediment column. The lakes discussed in this study are: Logipi, Eight (a small crater lake in the region of Kangirinyang), Baringo, Bogoria, Naivasha, Oloiden, and Sonachi.
The biomarker compositions were similar in all studied lake sediments; nevertheless, there were some differences between the saline and freshwater lakes. One of those differences is the occurrence of a molecule related to β-carotene, which was only found in the saline lakes. This molecule most likely originates from cyanobacteria, single-celled organisms which are commonly found in saline lakes. In the two freshwater lakes, stigmasterol, a sterol characteristic for freshwater algae, was found. In this study, it was shown that Lakes Bogoria and Sonachi can be used for environmental reconstructions with biomarkers, because the absence of oxygen at the lake bottoms slowed the degradation process. Other lakes, like for example Lake Naivasha, cannot be used for such reconstructions, because of the large anthropogenic influence. But the biomarkers proved to be a useful tool to study those anthropogenic influences. Additionally, it was observed that horizons with a high concentration of elemental sulphur can be used as temporal markers. Those horizons were deposited during times when the lake levels were very low. The sulphur was deposited by microorganisms which are capable of anoxygenic photosynthesis or sulphide oxidation.