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Actin is one of the most abundant and highly conserved proteins in eukaryotic cells. The globular protein assembles into long filaments, which form a variety of different networks within the cytoskeleton. The dynamic reorganization of these networks - which is pivotal for cell motility, cell adhesion, and cell division - is based on cycles of polymerization (assembly) and depolymerization (disassembly) of actin filaments. Actin binds ATP and within the filament, actin-bound ATP is hydrolyzed into ADP on a time scale of a few minutes. As ADP-actin dissociates faster from the filament ends than ATP-actin, the filament becomes less stable as it grows older. Recent single filament experiments, where abrupt dynamical changes during filament depolymerization have been observed, suggest the opposite behavior, however, namely that the actin filaments become increasingly stable with time. Several mechanisms for this stabilization have been proposed, ranging from structural transitions of the whole filament to surface attachment of the filament ends. The key issue of this thesis is to elucidate the unexpected interruptions of depolymerization by a combination of experimental and theoretical studies. In new depolymerization experiments on single filaments, we confirm that filaments cease to shrink in an abrupt manner and determine the time from the initiation of depolymerization until the occurrence of the first interruption. This duration differs from filament to filament and represents a stochastic variable. We consider various hypothetical mechanisms that may cause the observed interruptions. These mechanisms cannot be distinguished directly, but they give rise to distinct distributions of the time until the first interruption, which we compute by modeling the underlying stochastic processes. A comparison with the measured distribution reveals that the sudden truncation of the shrinkage process neither arises from blocking of the ends nor from a collective transition of the whole filament. Instead, we predict a local transition process occurring at random sites within the filament. The combination of additional experimental findings and our theoretical approach confirms the notion of a local transition mechanism and identifies the transition as the photo-induced formation of an actin dimer within the filaments. Unlabeled actin filaments do not exhibit pauses, which implies that, in vivo, older filaments become destabilized by ATP hydrolysis. This destabilization can be identified with an acceleration of the depolymerization prior to the interruption. In the final part of this thesis, we theoretically analyze this acceleration to infer the mechanism of ATP hydrolysis. We show that the rate of ATP hydrolysis is constant within the filament, corresponding to a random as opposed to a vectorial hydrolysis mechanism.
Numerical simulation of the Antartic ice sheet and its dynamic response to external pertubations
(2012)
Nucleation and growth of unsubstituted metal phthalocyanine films from solution on planar substrates
(2012)
In den vergangenen Jahren wurden kosteneffiziente nasschemische Beschichtungsverfahren für die Herstellung organischer Dünnfilme für verschiedene opto-elektronische Anwendungen entdeckt und weiterentwickelt. Unter anderem wurden Phthalocyanin-Moleküle in photoaktiven Schichten für die Herstellung von Solarzellen intensiv erforscht. Aufgrund der kleinen bzw. unbekannten Löslichkeit wurden Phthalocyanin-Schichten durch Aufdampfverfahren im Vakuum hergestellt. Des Weiteren wurde die Löslichkeit durch chemische Synthese erhöht, was aber die Eigenschaften von Pc beeinträchtigte. In dieser Arbeit wurde die Löslichkeit, optische Absorption und Stabilität von 8 verschiedenen unsubstituierten Metall-Phthalocyaninen in 28 verschiedenen Lösungsmitteln quantitativ gemessen. Wegen ausreichender Löslichkeit, Stabilität und Anwendbarkeit in organischen Solarzellen wurde Kupferphthalocyanin (CuPc) in Trifluoressigsäure (TFA) für weitere Untersuchungen ausgewählt. Durch die Rotationsbeschichtung von CuPc aus TFA Lösung wurde ein dünner Film aus der verdampfenden Lösung auf dem Substrat platziert. Nach dem Verdampfen des Lösungsmittels, die Nanobändern aus CuPc bedecken das Substrat. Die Nanobänder haben eine Dicke von etwa ~ 1 nm (typische Dimension eines CuPc-Molekül) und variierender Breite und Länge, je nach Menge des Materials. Solche Nanobändern können durch Rotationsbeschichtung oder auch durch andere Nassbeschichtungsverfahren, wie Tauchbeschichtung, erzeugt werden. Ähnliche Fibrillen-Strukturen entstehen durch Nassbeschichtung von anderen Metall-Phthalocyaninen, wie Eisen- und Magnesium-Phthalocyanin, aus TFA-Lösung sowie auf anderen Substraten, wie Glas oder Indium Zinnoxid. Materialeigenschaften von aufgebrachten CuPc aus TFA Lösung und CuPc in der Lösung wurden ausführlich mit Röntgenbeugung, Spektroskopie- und Mikroskopie Methoden untersucht. Es wird gezeigt, dass die Nanobänder nicht in der Lösung, sondern durch Verdampfen des Lösungsmittels und der Übersättigung der Lösung entstehen. Die Rasterkraftmikroskopie wurde dazu verwendet, um die Morphologie des getrockneten Films bei unterschiedlicher Konzentration zu studieren. Der Mechanismus der Entstehung der Nanobändern wurde im Detail studiert. Gemäß der Keimbildung und Wachstumstheorie wurde die Entstehung der CuPc Nanobänder aus einer übersättigt Lösung diskutiert. Die Form der Nanobändern wurde unter Berücksichtigung der Wechselwirkung zwischen den Molekülen und dem Substrat diskutiert. Die nassverarbeitete CuPc-Dünnschicht wurde als Donorschicht in organischen Doppelschicht Solarzellen mit C60-Molekül, als Akzeptor eingesetzt. Die Effizienz der Energieumwandlung einer solchen Zelle wurde entsprechend den Schichtdicken der CuPc Schicht untersucht.
Particles in Saturn’s main rings range in size from dust to even kilometer-sized objects. Their size distribution is thought to be a result of competing accretion and fragmentation processes. While growth is naturally limited in tidal environments, frequent collisions among these objects may contribute to both accretion and fragmentation. As ring particles are primarily made of water ice attractive surface forces like adhesion could significantly influence these processes, finally determining the resulting size distribution. Here, we derive analytic expressions for the specific self-energy Q and related specific break-up energy Q⋆ of aggregates. These expressions can be used for any aggregate type composed of monomeric constituents. We compare these expressions to numerical experiments where we create aggregates of various types including: regular packings like the face-centered cubic (fcc), Ballistic Particle Cluster Aggregates (BPCA), and modified BPCAs including e.g. different constituent size distributions. We show that accounting for attractive surface forces such as adhesion a simple approach is able to: a) generally account for the size dependence of the specific break-up energy for fragmentation to occur reported in the literature, namely the division into “strength” and “gravity” regimes, and b) estimate the maximum aggregate size in a collisional ensemble to be on the order of a few meters, consistent with the maximum aggregate size observed in Saturn’s rings of about 10m.
Thermal and quantum fluctuations of the electromagnetic near field of atoms and macroscopic bodies play a key role in quantum electrodynamics (QED), as in the Lamb shift. They lead, e.g., to atomic level shifts, dispersion interactions (Van der Waals-Casimir-Polder interactions), and state broadening (Purcell effect) because the field is subject to boundary conditions. Such effects can be observed with high precision on the mesoscopic scale which can be accessed in micro-electro-mechanical systems (MEMS) and solid-state-based magnetic microtraps for cold atoms (‘atom chips’). A quantum field theory of atoms (molecules) and photons is adapted to nonequilibrium situations. Atoms and photons are described as fully quantized while macroscopic bodies can be included in terms of classical reflection amplitudes, similar to the scattering approach of cavity QED. The formalism is applied to the study of nonequilibrium two-body potentials. We then investigate the impact of the material properties of metals on the electromagnetic surface noise, with applications to atomic trapping in atom-chip setups and quantum computing, and on the magnetic dipole contribution to the Van der Waals-Casimir-Polder potential in and out of thermal equilibrium. In both cases, the particular properties of superconductors are of high interest. Surface-mode contributions, which dominate the near-field fluctuations, are discussed in the context of the (partial) dynamic atomic dressing after a rapid change of a system parameter and in the Casimir interaction between two conducting plates, where nonequilibrium configurations can give rise to repulsion.