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Two approaches for the synthesis of prenylated isoflavones were explored: the 2,3-oxidative rearrangement/cross metathesis approach, using hypervalent iodine reagents as oxidants and the Suzuki-Miyaura cross-coupling/cross metathesis approach. Three natural prenylated isoflavones: 5-deoxy-3′-prenylbiochanin A (59), erysubin F (61) and 7-methoxyebenosin (64), and non-natural analogues: 7,4′-dimethoxy-8,3′-diprenylisoflavone (126j) and 4′-hydroxy-7-methoxy-8,3′-diprenylisoflavone (128) were synthesized for the first time via the 2,3-oxidative rearrangement/cross metathesis approach, using mono- or diallylated flavanones as key intermediates. The reaction of flavanones with hypervalent iodine reagents afforded isoflavones via a 2,3-oxidative rearrangement and the corresponding flavone isomers via a 2,3-dehydrogenation. This afforded the synthesis of 7,4′-dimethoxy-8-prenylflavone (127g), 7,4′-dimethoxy-8,3′-diprenylflavone (127j), 7,4′-dihydroxy-8,3′-diprenylflavone (129) and 4′-hydroxy-7-methoxy-8,3′-diprenylflavone (130), the non-natural regioisomers of 7-methoxyebenosin, 126j, erysubin F and 128 respectively. Three natural prenylated isoflavones: 3′-prenylbiochanin A (58), neobavaisoflavone (66) and 7-methoxyneobavaisoflavone (137) were synthesized for the first time using the Suzuki-Miyaura cross-coupling/cross metathesis approach. The structures of 3′-prenylbiochanin A (58) and 5-deoxy-3′-prenylbiochanin A (59) were confirmed by single crystal X-ray diffraction analysis. The 2,3-oxidative rearrangement approach appears to be limited to the substitution pattern on both rings A and B of the flavanone while the Suzuki-Miyaura cross-coupling approach appears to be the most suitable for the synthesis of simple isoflavones or prenylated isoflavones whose prenyl substituents or allyl groups, the substituents that are essential precursors for the prenyl side chains, can be regioselectively introduced after the construction of the isoflavone core.
The chalcone-flavanone hybrids 146, 147 and 148, hybrids of the naturally occurring bioactive flavanones liquiritigenin-7-methyl ether, liquiritigenin and liquiritigenin-4′-methyl ether respectively were also synthesized for the first time, using Matsuda-Heck arylation and allylic/benzylic oxidation as key steps.
The intermolecular interactions of 5-deoxy-3′-prenylbiochanin A (59) and its two closely related precursors 106a and 106b was investigated by single crystal and Hirshfeld surface analyses to comprehend their different physicochemical properties. The results indicate that the presence of strong intermolecular O-H···O hydrogen bonds and an increase in the number of π-stacking interactions increases the melting point and lowers the solubility of isoflavone derivatives. However, the strong intermolecular O-H···O hydrogen bonds have a greater effect than the π-stacking interactions.
5-Deoxy-3′-prenylbiochanin A (59), erysubin F (61) and 7,4′-dihydroxy-8,3′-diprenylflavone (129), were tested against three bacterial strains and one fungal pathogen. All the three compounds were inactive against Salmonella enterica subsp. enterica (NCTC 13349), Escherichia coli (ATCC 25922), and Candida albicans (ATCC 90028), with MIC values greater than 80.0 μM. The diprenylated isoflavone erysubin F (61) and its flavone isomer 129 showed in vitro activity against methicillin-resistant Staphylococcus aureus (MRSA, ATCC 43300) at MIC values of 15.4 and 20.5 μM, respectively. 5-Deoxy-3′-prenylbiochanin A (59) was inactive against this MRSA strain. Erysubin F (61) and its flavone isomer 129 could serve as lead compounds for the development of new alternative drugs for the treatment of MRSA infections.
Bio-sourced adsorbing poly(2-oxazoline)s mimicking mussel glue proteins for antifouling applications
(2022)
Nature developed countless systems for many applications. In maritime environments, several organisms established extra-ordinary mechanisms to attach to surfaces. Over the past years, the scientific interest to employ those mechanisms for coatings and long-lasting adhering materials gained significant attention.
This work describes the synthesis of bio-inspired adsorbing copoly(2-oxazoline)s for surface coatings with protein repelling effects, mimicking mussel glue proteins. From a set of methoxy substituted phenyl, benzyl, and cinnamyl acids, 2-oxazoline monomers were synthesized. All synthesized 2-oxazolines were analyzed by FT-IR spectroscopy, NMR spectroscopy, and EI mass spectrometry. With those newly synthesized 2-oxazoline monomers and 2-ethyl-2-oxazoline, kinetic studies concerning homo- and copolymerization in a microwave reactor were conducted. The success of the polymerization reactions was demonstrated by FT-IR spectroscopy, NMR spectroscopy, MALDI-TOF mass spectrometry, and size exclusion chromatography (SEC). The copolymerization of 2-ethyl-2-oxazoline with a selection of methoxy-substituted 2-oxazolines resulted in water-soluble copolymers. To release the adsorbing catechol and cationic units, the copoly(2-oxazoline)s were modified. The catechol units were (partially) released by a methyl aryl ether cleavage reaction. A subsequent partial acidic hydrolysis of the ethyl unit resulted in mussel glue protein-inspired catechol and cation-containing copolymers. The modified copolymers were analyzed by NMR spectroscopy, UV-VIS spectroscopy, and SEC. The catechol- and cation-containing copolymers and their precursors were examined by a Quartz Crystal Microbalance with Dissipation (QCM-D), so study the adsorption performance on gold, borosilicate, iron, and polystyrene surfaces. An exemplary study revealed that a catechol and cation-containing copoly(2-oxazoline)-coated gold surface exhibits strong protein repelling properties.
The key to reduce the energy required for specific transformations in a selective manner is the employment of a catalyst, a very small molecular platform that decides which type of energy to use. The field of photocatalysis exploits light energy to shape one type of molecules into others, more valuable and useful.
However, many challenges arise in this field, for example, catalysts employed usually are based on metal derivatives, which abundance is limited, they cannot be recycled and are expensive. Therefore, carbon nitrides materials are used in this work to expand horizons in the field of photocatalysis.
Carbon nitrides are organic materials, which can act as recyclable, cheap, non-toxic, heterogeneous photocatalysts. In this thesis, they have been exploited for the development of new catalytic methods, and shaped to develop new types of processes.
Indeed, they enabled the creation of a new photocatalytic synthetic strategy, the dichloromethylation of enones by dichloromethyl radical generated in situ from chloroform, a novel route for the making of building blocks to be used for the productions of active pharmaceutical compounds.
Then, the ductility of these materials allowed to shape carbon nitride into coating for lab vials, EPR capillaries, and a cell of a flow reactor showing the great potential of such flexible technology in photocatalysis.
Afterwards, their ability to store charges has been exploited in the reduction of organic substrates under dark conditions, gaining new insights regarding multisite proton coupled electron transfer processes.
Furthermore, the combination of carbon nitrides with flavins allowed the development of composite materials with improved photocatalytic activity in the CO2 photoreduction.
Concluding, carbon nitrides are a versatile class of photoactive materials, which may help to unveil further scientific discoveries and to develop a more sustainable future.
Proteine erfüllen bei einer Vielzahl von Prozessen eine essenzielle Rolle. Um diese Funktionsweisen zu verstehen, bedarf es der Aufklärung derer Struktur und deren Bindungsverhaltens mit anderen Molekülen wie Proteinen, Peptiden, Kohlenhydraten oder kleinen Molekülen. Im ersten Teil dieser Arbeit wurden der Wildtyp und die Punktmutante N126W eines Kohlenhydrat-bindenden Proteins aus dem hitzestabilen Bakterium C. thermocellum untersucht, welches Teil eines Komplexes ist, der Kohlenhydrate wie Cellulose erkennen, binden und abbauen kann. Dazu wurde dieses Protein mit E.coli Bakterien hergestellt und durch Metallchelat- und Größenausschlusschromatographie gereinigt. Die Proteine konnten isotopenmarkiert mittels Kernspinresonanz-Spektroskopie (NMR) untersucht werden. H/D-Austauschexperimente zeigten leicht und schwer zugängliche Stellen im Protein für eine mögliche Ligandenwechselwirkung. Anschließend konnte eine Interaktion beider Proteine mit Cellulosefragmenten festgestellt werden. Diese interagieren über zwischenmolekulare Kräfte mit den Seitenketten von aromatischen Aminosäuren und über Wasserstoffbrückenbindungen mit anderen Resten. Weiterhin wurde die Calcium-Bindestelle analysiert und es konnte gezeigt werden, das diese nach der Proteinherstellung mit einem Calcium-Ion besetzt ist und dieses mit dem Komplexbildner EDTA entfernbar ist, jedoch wieder reversibel besetzt werden kann. Zum Schluss wurde mittels zweier Methoden versucht (grafting from und grafting to), das Protein mit einem temperatursensorischen Polymer (Poly-N-Isopropylacrylamid) zu koppeln, um so Eigenschaften wie Löslichkeit oder Stabilität zu beeinflussen. Es zeigte sich, das während die grafting from Methode (Polymer wächst direkt vom Protein) zu einer teilweisen Entfaltung und Destabilisierung des Proteins führte, bei der grafting to Methode (Polymer wird separat hergestellt und dann an das Protein gekoppelt) das Protein seine Stabilität behielt und nur wenige Polymerketten angebaut waren. Der zweite Teil dieser Arbeit beschäftigte sich mit der Interaktion von zwei LIM-Domänen des Proteins Paxillin und der zytoplasmatischen Domäne der Peptide Integrin-β1 und Integrin-β3. Diese spielen eine wichtige Rolle bei der Bewegung von Zellen. Dabei interagieren sie mit einer Vielzahl an anderen Proteinen, um fokale Adhäsionen (Multiproteinkomplexe) zu bilden. Bei der Herstellung des Peptids Integrin-β3 zeigte sich durch Größenausschlusschromatographie und Massenspektrometrie ein Abbau, bei dem verschiedene Aminosäuregruppen abgespalten werden. Dieser konnte durch eine Zugabe des Serinprotease-Inhibitors AEBSF verhindert werden. Anschließend wurde die direkte Interaktion der Proteine untereinander mittels NMR untersucht. Dabei zeigte sich, das Integrin-β1 und Integrin-β3 an die gleiche Position binden, nämlich an den flexiblen Loop der LIM3-Domäne von Paxillin. Die Dissoziationskonstanten zeigten, dass Integrin-β1 mit einer zirka zehnfach höheren Affinität im Vergleich zu Integrin-β3 an Paxillin bindet. Während Paxillins Bindestelle an Integrin-β1 in der Mitte des Peptids liegt, ist bei Integrin-β3 der C-Terminus essenziell. Daher wurden die drei C-terminalen Aminosäuren entfernt und erneut Bindungsstudien durchgeführt, welche gezeigt haben, das die Affinität dadurch fast vollständig unterbunden wurde. Final wurde der flexible Loop der LIM3-Domäne in zwei andere Aminosäuresequenzen mutiert, um die Bindung auf der Paxillin-Seite auszulöschen. Jedoch zeigten sowohl Zirkulardichroismus-Spektroskopie als auch NMR-Spektroskopie, dass die Mutationen zu einer teilweisen Entfaltung der Domäne geführt haben und somit nicht als geeignete Kandidaten für diese Studien identifiziert werden konnten.
One aspect of achieving a more sustainable chemical industry is the minimization of the usage of solvents and chemicals. Thus, optimization and development of chemical processes for large-scale production is favourably performed in small batches. The critical step in this approach is upscaling the batches from the small reaction systems to the large reactors mandatory for cost efficient production in an industrial environment. Scaling up the bulk volume always goes along with increasing the surface where the reaction medium is in contact with the confining vessel. Since volume scales proportional with the cubic dimension while the surface scales quadratic, their ratio is size-dependent. The influence of reaction vessel walls can change the reaction performance. A number of phenomena occurring at the surface-liquid interface can affect reaction rates and yields, resulting in possible difficulties in predicting and extrapolating from small size production scale to large industrial processes. The application of levitated droplets as a containerless reaction vessels provides a promising possibility to avoid the above-mentioned issues.
In the presented work, an efficient coupling of acoustically levitated droplets to an ion mobility (IM) spectrometer, operating at ambient conditions, was designed for real-time monitoring of chemical reactions. The design of the system comprises noncontact sampling and ionization of the droplet realised by laser desorption/ionization at 2,94 µm. The scope of the work includes fundamental studies covering understanding of laser irradiation of droplets enclosed in an acoustical field. Understanding of this phenomenon is crucial to comprehending the effects of temporal and spatial resolution of the generated ion plume that influence the resolution of the system.
The set-up includes an acoustic trap, laser irradiation and ion manipulation electrostatic lenses operating at high voltage at ambient pressure. The complexity of the design needs to fully be considered for an effective ion transfer at the interface region between the levitated droplet and IM spectrometer. For sampling and ionization, two distinct laser pulse lengths were evaluated, ns and µs. Irradiation via µs laser pulses provides several advantages: i) the droplet volume is not extensively impinged, as in case of ns laser pulses, allowing the sampling of only the small volume of the droplet; ii) the lower fluence results in less pronounced oscillations of the droplet confined in the acoustic field. The droplet will not be dissipated out of the acoustic field leading to loss of the sample; iii) the mild laser irradiation results in better spatial and temporal ion plume confinement, leading to better resolution of the detected ion packets. Finally, this knowledge allows the application of ion optics necessary to induce ion flow between the droplet suspended in the acoustic field and the IM spectrometer. The ion optics, composed of 2 electrostatic lenses placed in the near vicinity of the droplet, allow effective focusing of the ion plume and its redirection directly to the IM spectrometer entrance. This novel coupling has proved to be successful for detection of some simple molecules ionizable at the 2.94 µm wavelength. To further demonstrate the applicability of the system, a proof-of-principle reaction was selected, fulfilling the requirements of the system, and was subjected to comprehensive investigation of its performance. Herein, the reaction between N-Boc cysteine methyl ester and allyl alcohol has been performed in a batch reactor and on-line monitored via 1H NMR to establish reaction propagation. With the additional assessment, it was confirmed that the thiol-ene coupling can be performed within first 20 minutes of the irradiation with a reaction yield above 50%, proving that the reaction can be applied as a study case to assess the possibilities of the developed system.
Development of functionalized waterborne coatings for the production of multifunctional microapsules
(2022)
Under the in vivo condition, a cell is continually interacting with its surrounding microenvironment, which is composed of its neighboring cells and the extracellular matrix (ECM). These components generate and transmit the microenvironmental signals to regulate the fate and function of the target cells. Except the signals from the microenvironment, stimuli from the ambient environment, such as temperature changes, also play an important in modulating the cell behaviors, which are considered as regulators from the macroenvironment. In this regard, recapitulation of these environmental factors to steer cell function will be of crucial importance for therapeutic purposes and tissue regeneration. Although the role of a variety of environmental factors has been evaluated, it is still challenging to identify and provide the appropriate factors, which are required for optimizing the survival of cells and for ensuring effective cell functions.
Thus, in vitro recreating the environmental factors that are present in the extracellular environment would help to understand the mechanism of how cells sense and process those environmental signals. In this context, this thesis is aimed to harness these environmental parameters to guide cell responses. Here, human induced pluripotent stem cells (hiPSCs) and human keratinocytes (KTCs), HaCaT cells, were used to investigate the impact of signals from the microenvironment or stimuli from the macroenvironment.
Firstly, polydopamine (PDA) or chitosan (CS) modifications were applied to generate different substrate surfaces for hiPSCs and KTCs (Chapter 4 to Chapter 6). Our results showed that the PDA modification was efficient to increase the cell-substrate adhesion and consequently promoted cell spreading. While CS modification was able to decrease the cell-substrate adhesion and enhance the cell-cell interaction, which enabled the morphology shift from monolayered cells to multicellular spheroids. The quantitative result was acquired using the atomic force microscopy (AFM)-based single-cell force spectroscopy. The balance between the cell-substrate and cell-cell adhesion yielded a net force, which determined the preference of the cell to adhere to its neighboring cells or to the substrate. The difference in the adhesive behaviors further affected the cellular function, such as the proliferation and differentiation potential of both hiPSCs and HaCaT cells.
Next, the cyclic temperature changes (ΔT) were selected here to study the influence of macroenvironmental stimuli on hiPSCs and KTCs (Chapter 7 and Chapter 8). The macroenvironmental temperature ranging from 10.0 ± 0.1 °C to 37.0 ± 0.1 °C was achieved using a thermal chamber equipped with a temperature controller. This temperature range was selected to explore the responses of hiPSCs to the extreme environments, while a temperature variation between 25.0 ± 0.1 °C and 37.0 ± 0.1 °C was applied to mimic the ambient temperature variations experienced by the skin epithelial KTCs. The ΔT led to cell stiffening in both hiPSCs and HaCaT cells in a cytoskeleton-dependent manner, which was measured by AFM. Specifically, in hiPSCs, the cell stiffening was resulted from the rearrangement of the actin skeleton; in HaCaT cells, was due to the difference of the Keratin (KRT) filaments. Except for inducing cell hardening, ΔT also caused differences in the protein expression profiles in hiPSCs or HaCaT cells, compared to those without ΔT treatment, which might be attributed to the alterations in their cytoskeleton structures.
To sum up, the results of the thesis demonstrated how individual factors from the micro-/macro-environment can be harnessed to modulate the behaviors of hiPSCs and HaCaT cells. Engineering the microenvironmental cues using surface modification and exploiting the macroenvironmental stimuli through temperature control were identified as precise and potent approaches to steer hiPSC and HaCaT cell behaviors. The application of AFM served as a non-invasive and real-time monitoring platform to trace the change in cell topography and mechanics induced by the environmental signals, which provide novel insights into the cell-environment interactions.
The doctoral thesis presented provides a comprehensive view of laser-based ablation techniques promoted to new fields of operation, including, but not limited to, size, composition, and concentration analyses. It covers various applications of laser ablation techniques over a wide range of sizes, from single molecules all the way to aerosol particles. The research for this thesis started with broadening and deepening the field of application and the fundamental understanding of liquid-phase IR-MALDI. Here, the hybridization of ion mobility spectrometry and microfluidics was realized by using IR-MALDI as the coupling technique for the first time. The setup was used for monitoring the photocatalytic performance of the E-Z isomerization of olefins. Using this hybrid, measurement times were so drastically reduced that such photocatalyst screenings became a matter of minutes rather than hours. With this on hand, triple measurements screenings could not only be performed within ten minutes, but also with a minimum amount of resources highlighting its potential as a green chemistry alternative to batch-sized reactions. Along the optimizing process of the IR-MALDI source for microfluidics came its application for another liquid sample supply method, the hanging drop. This demarcated one of the first applications of IR-MALDI for the charging of sub-micron particles directly from suspensions via their gas-phase transfer, followed by their characterization with differential mobility analysis. Given the high spectral quality of the data up to octuply charged particles became experimentally accessible, this laid the foundation for deriving a new charge distribution model for IR-MALDI in that size regime. Moving on to even larger analyte sizes, LIBS and LII were employed as ablation techniques for the solid phase, namely the aerosol particles themselves. Both techniques produce light-emitting events and were used to quantify and classify different aerosols. The unique configuration of stroboscopic imaging, photoacoustics, LII, and LIBS measurements opened new realms for analytical synergies and their potential application in industry. The concept of using low fluences, below 100 J/cm2, and high repetition rates of up to 500 Hz for LIBS makes for an excellent phase-selective LIBS setup. This concept was combined with a new approach to the photoacoustic normalization of LIBS. Also, it was possible to acquire statistically relevant amounts of data in a matter of seconds, showing its potential as a real-time optimization technique. On the same time axis, but at much lower fluences, LII was used with a similar methodology to quickly quantify and classify airborne particles of different compositions. For the first time, aerosol particles were evaluated on their LII susceptibility by using a fluence screening approach.
The increasing demand for energy in the current technological era and the recent political decisions about giving up on nuclear energy diverted humanity to focus on alternative environmentally friendly energy sources like solar energy. Although silicon solar cells are the product of a matured technology, the search for highly efficient and easily applicable materials is still ongoing. These properties made the efficiency of halide perovskites comparable with silicon solar cells for single junctions within a decade of research. However, the downside of halide perovskites are poor stability and lead toxicity for the most stable ones.
On the other hand, chalcogenide perovskites are one of the most promising absorber materials for the photovoltaic market, due to their elemental abundance and chemical stability against moisture and oxygen. In the search of the ultimate solar absorber material, combining the good optoelectronic properties of halide perovskites with the stability of chalcogenides could be the promising candidate.
Thus, this work investigates new techniques for the synthesis and design of these novel chalcogenide perovskites, that contain transition metals as cations, e.g., BaZrS3, BaHfS3, EuZrS3, EuHfS3 and SrHfS3. There are two stages in the deposition techniques of this study: In the first stage, the binary compounds are deposited via a solution processing method. In the second stage, the deposited materials are annealed in a chalcogenide atmosphere to form the perovskite structure by using solid-state reactions.
The research also focuses on the optimization of a generalized recipe for a molecular ink to deposit precursors of chalcogenide perovskites with different binaries. The implementation of the precursor sulfurization resulted in either binaries without perovskite formation or distorted perovskite structures, whereas some of these materials are reported in the literature as they are more favorable in the needle-like non-perovskite configuration.
Lastly, there are two categories for the evaluation of the produced materials: The first category is about the determination of the physical properties of the deposited layer, e.g., crystal structure, secondary phase formation, impurities, etc. For the second category, optoelectronic properties are measured and compared to an ideal absorber layer, e.g., band gap, conductivity, surface photovoltage, etc.