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Iron-sulfur (Fe-S) clusters are essential protein cofactors. In enzymes, they are present either in the rhombic [2Fe-2S] or the cubic [4Fe-4S] form, where they are involved in catalysis and electron transfer and in the biosynthesis of metal-containing prosthetic groups like the molybdenum cofactor (Moco). Here, we give an overview of the assembly of Fe-S clusters in bacteria and humans and present their connection to the Moco biosynthesis pathway. In all organisms, Fe-S cluster assembly starts with the abstraction of sulfur froml-cysteine and its transfer to a scaffold protein. After formation, Fe-S clusters are transferred to carrier proteins that insert them into recipient apo-proteins. In eukaryotes like humans and plants, Fe-S cluster assembly takes place both in mitochondria and in the cytosol. Both Moco biosynthesis and Fe-S cluster assembly are highly conserved among all kingdoms of life. Moco is a tricyclic pterin compound with molybdenum coordinated through its unique dithiolene group. Moco biosynthesis begins in the mitochondria in a Fe-S cluster dependent step involving radical/S-adenosylmethionine (SAM) chemistry. An intermediate is transferred to the cytosol where the dithiolene group is formed, to which molybdenum is finally added. Further connections between Fe-S cluster assembly and Moco biosynthesis are discussed in detail.
In order to tailor solution-phase chemical reactions involving transition metal complexes, it is critical to understand how their valence electronic charge distributions are affected by the solution environment. Here, solute-solvent interactions of a solvatochromic mixed-ligand iron complex were investigated using X-ray absorption spectroscopy at the transition metal L-2,L-3-edge. Due to the selectivity of the corresponding core excitations to the iron 3d orbitals, the method grants direct access to the valence electronic structure around the iron center and its response to interactions with the solvent environment. A linear increase of the total L-2,L-3-edge absorption cross section as a function of the solvent Lewis acidity is revealed. The effect is caused by relative changes in different metal-ligand-bonding channels, which preserve local charge densities while increasing the density of unoccupied states around the iron center. These conclusions are corroborated by a combination of molecular dynamics and spectrum simulations based on time-dependent density functional theory. The simulations reproduce the spectral trends observed in the X-ray but also optical absorption experiments. Our results underscore the importance of solute-solvent interactions when aiming for an accurate description of the valence electronic structure of solvated transition metal complexes and demonstrate how L-2,L-3-edge absorption spectroscopy can aid in understanding the impact of the solution environment on intramolecular covalency and the electronic charge distribution.
Magnetische Nanopartikel bieten ein großes Potential, da sie einerseits die Eigenschaften ihrer Bulk-Materialien besitzen und anderseits, auf Grund ihrer Größe, über komplett unterschiedliche magnetische Eigenschaften verfügen können; Superparamagnetismus ist eine dieser Eigenschaften. Die meisten etablierten Anwendungen magnetischer Nanopartikel basieren heutzutage auf Eisenoxiden. Diese bieten gute magnetische Eigenschaften, sind chemisch relativ stabil, ungiftig und lassen sich auf vielen Synthesewegen relativ einfach herstellen. Die magnetischen Eigenschaften der Eisenoxide sind materialabhängig aber begrenzt, weshalb nach anderen Verbindungen mit besseren Eigenschaften gesucht werden muss. Eisencarbid (Fe3C) kann eine dieser Verbindungen sein. Dieses besitzt vergleichbare positive Eigenschaften wie Eisenoxid, jedoch viel bessere magnetische Eigenschaften, speziell eine höhere Sättigungsmagnetisierung. Bis jetzt wurde Fe3C hauptsächlich in Gasphasenabscheidungsprozessen synthetisiert oder als Nebenprodukt bei der Synthese von Kohlenstoffstrukturen gefunden. Eine Methode, mit der gezielt Fe3C-Nanopartikel und andere Metallcarbide synthetisiert werden können, ist die „Harnstoff-Glas-Route“. Neben den Metallcarbiden können mit dieser Methode auch die entsprechenden Metallnitride synthetisiert werden, was die breite Anwendbarkeit der Methode unterstreicht. Die „Harnstoff-Glas-Route“ ist eine Kombination eines Sol-Gel-Prozesses mit einer anschließenden carbothermalen Reduktion/Nitridierung bei höheren Temperaturen. Sie bietet den Vorteil einer einfachen und schnellen Synthese verschiedener Metallcarbide/nitride. Der Schwerpunkt in dieser Arbeit lag auf der Synthese von Eisencarbiden/nitriden, aber auch Nickel und Kobalt wurden betrachtet. Durch die Variation der Syntheseparameter konnten verschiedene Eisencarbid/nitrid Nanostrukturen synthetisiert werden. Fe3C-Nanopartikel im Größenbereich von d = 5 – 10 nm konnten, durch die Verwendung von Eisenchlorid, hergestellt werden. Die Nanopartikel weisen durch ihre geringe Größe superparamagnetische Eigenschaften auf und besitzen, im Vergleich zu Eisenoxid Nanopartikeln im gleichen Größenbereich, eine höhere Sättigungsmagnetisierung. Diese konnten in fortführenden Experimenten erfolgreich in ionischen Flüssigkeiten und durch ein Polymer-Coating, im wässrigen Medium, dispergiert werden. Desweiteren wurde durch ein Templatieren mit kolloidalem Silika eine mesoporöse Fe3C-Nanostruktur hergestellt. Diese konnte erfolgreich in der katalytischen Spaltung von Ammoniak getestet werden. Mit der Verwendung von Eisenacetylacetonat konnten neben Fe3C-Nanopartikeln, nur durch Variation der Reaktionsparameter, auch Fe7C3- und Fe3N-Nanopartikel synthetisiert werden. Speziell für die Fe3C-Nanopartikel konnte die Sättigungsmagnetisierung, im Vergleich zu den mit Eisenchlorid synthetisierten Nanopartikeln, nochmals erhöht werden. Versuche mit Nickelacetat führten zu Nickelnitrid (Ni3N) Nanokristallen. Eine zusätzliche metallische Nickelphase führte zu einer Selbstorganisation der Partikel in Scheiben-ähnliche Überstrukturen. Mittels Kobaltacetat konnten, in Sphären aggregierte, metallische Kobalt Nanopartikel synthetisiert werden. Kobaltcarbid/nitrid war mit den gegebenen Syntheseparametern nicht zugänglich.
During the last decades, increasing exports of both dissolved organic carbon (DOC) and iron were observed from peat catchments in North America and Europe with potential consequences for water quality of streamwater and carbon storages of soils. As mobilisation and transport processes of DOC and iron in peat catchments are only partly understood, the purpose of this study was to elucidate these processes in an intensively monitored and studied system. Specifically, it was hypothesised that dissimilatory iron reduction in riparian peatland soils mobilises DOC initially adsorbed to iron minerals. During stormflow conditions, both DOC and iron will be transported into the stream network. Ferrous iron may be reoxidised at redox interfaces on its way to the stream, and subsequently, ferric iron could be transported together with DOC as complexes. To test these hypotheses, generalised additive models (GAMs) were applied to 14 years of weekly time series of discharge and concentrations of selected solutes measured in a German headwater stream called Lehstenbach. This stream drains a 4.19-km(2) forested mountain catchment; one third of which is covered by riparian peatland soils. We interpreted results of different types of GAM in the way that (a) iron reduction drove the mobilisation of DOC from peatland soils and that (b) both iron and DOC were transported as complexes after their joint mobilisation to and within the steam. It was speculated that low nitrate availability in the uppermost wetland soil layer, particularly during the growing season, promoted iron reduction and thus the mobilisation of DOC. However, the influence of nitrate on the DOC mobilisation remains relatively uncertain. This influence could be further investigated using methods similar to the GAM analysis conducted here for other catchments with long-term data as well as detailed measurements of the relevant species in riparian wetland soils and the adjacent stream network.
Magnetotactic bacteria comprise a heterogeneous group of Gram negative bacteria which share the ability to synthesise intracellular magnetic nanoparticles surrounded by a lipid bilayer, known as magnetosomes, which are arranged in linear chains. The bacteria exert a unique level of control onto the biomineralization of these nanoparticles, which is seen in the controlled size and shape they have. These characteristics have attracted great attention on understanding the process by which the bacteria synthesise the magnetosomes. Moreover, the magnetosome chain impart the bacteria with a net magnetic dipole which makes them susceptible to interact with magnetic fields and thus orient with the Earth’s magnetic field. This feature has attracted as well much interest to understand how the swimming motility of these microorganisms is affected by the presence of magnetic fields. Most of the studies performed in these bacteria so far have been conducted in the traditional manner using large populations of cells. Such studies have the disadvantage of averaging many different individuals with heterogeneous behaviours and fail to consider individual variations. In addition, in large populations each bacterium will be subjected to a different microenvironment that will influence the bacterial behaviour, but which cannot be defined using these traditional methods. In this thesis, different microfluidic platforms are proposed to overcome these limitations and to offer the possibility to study magnetotactic bacteria in defined environments and down to a single-cell resolution. First, a sediment-like microfluidic platform is presented with the purpose of mimicking the porous environment they bacteria naturally dwell in. The platform allows to observe via transmitted light microscopy that bacterial navigation in crowded environments is enhanced by the Earth’s magnetic field strengths (B = 50 μT) rather than by null (B = 0 μT) or higher magnetic fields (B = 500 μT). Second, a microfluidic system to confine single-bacterial cells in physically defined environments is presented. The system allows to study via transmitted light microscopy the interplay between wall curvature, magnetic fields and bacterial speed affect the motion of a confined bacterium, and shows how bacterial trajectories depend on those three parameters. Third, a microfluidic platform to conduct semi in vivo magnetosome nucleation with a single-cell resolution via X-ray fluorescence is fabricated. It is shown that signal arising from magnetosome full chains can be observed individually in each bacterium. Finally, the iron uptake kinetics of a single bacterium are studied via a fluorescent reporter through confocal microscopy. Two different approaches are used for this: one of the previously mentioned platforms, as well as giant lipid vesicles. It is observed how iron uptake rates vary between cells, as well as how these rates are consistent with magnetosome formation taking place within some hours. The present thesis shows therefore how microfluidic technologies can be implemented for the study of magnetotactic bacteria at different degrees, and the level of resolution that can be attained by going into the single- cell scale.
Evolution of chemical bonding and spin-pairing energy in ferropericlase across Its spin transition
(2022)
The evolution of chemical bonding in ferropericlase, (Mg,Fe)O, with pressure may affect the physical and chemical properties of the Earth's lower mantle. Here, we report high-pressure optical absorption spectra of single-crystalline ferropericlase ((Mg0.87Fe0.13)O) up to 135 GPa. Combined with a re-evaluation of published partial fluorescence yield X-ray absorption spectroscopy data, we show that the covalency of the Fe-O bond increases with pressure, but the iron spin transition at 57-76.5 GPa reverses this trend. The qualitative crossover in chemical bonding suggests that the spin-pairing transition weakens the Fe-O bond in ferropericlase. We find, that the spin transition in ferropericlase is caused by both the increase of the ligand field-splitting energy and the decrease in the spin-pairing energy of high-spin Fe2+.
Trace elements, like Cu, Zn, Fe, or Se, are important for the proper functioning of antioxidant enzymes. However, in excessive amounts, they can also act as pro-oxidants. Accordingly, trace elements influence redox-modulated signaling pathways, such as the Nrf2 pathway. Vice versa, Nrf2 target genes belong to the group of transport and metal binding proteins. In order to investigate whether Nrf2 directly regulates the systemic trace element status, we used mice to study the effect of a constitutive, whole-body Nrf2 knockout on the systemic status of Cu, Zn, Fe, and Se. As the loss of selenoproteins under Se-deprived conditions has been described to further enhance Nrf2 activity, we additionally analyzed the combination of Nrf2 knockout with feeding diets that provide either suboptimal, adequate, or supplemented amounts of Se. Experiments revealed that the Nrf2 knockout partially affected the trace element concentrations of Cu, Zn, Fe, or Se in the intestine, liver, and/or plasma. However, aside from Fe, the other three trace elements were only marginally modulated in an Nrf2-dependent manner. Selenium deficiency mainly resulted in increased plasma Zn levels. One putative mediator could be the metal regulatory transcription factor 1, which was up-regulated with an increasing Se supply and downregulated in Se-supplemented Nrf2 knockout mice.
Trace elements, like Cu, Zn, Fe, or Se, are important for the proper functioning of antioxidant enzymes. However, in excessive amounts, they can also act as pro-oxidants. Accordingly, trace elements influence redox-modulated signaling pathways, such as the Nrf2 pathway. Vice versa, Nrf2 target genes belong to the group of transport and metal binding proteins. In order to investigate whether Nrf2 directly regulates the systemic trace element status, we used mice to study the effect of a constitutive, whole-body Nrf2 knockout on the systemic status of Cu, Zn, Fe, and Se. As the loss of selenoproteins under Se-deprived conditions has been described to further enhance Nrf2 activity, we additionally analyzed the combination of Nrf2 knockout with feeding diets that provide either suboptimal, adequate, or supplemented amounts of Se. Experiments revealed that the Nrf2 knockout partially affected the trace element concentrations of Cu, Zn, Fe, or Se in the intestine, liver, and/or plasma. However, aside from Fe, the other three trace elements were only marginally modulated in an Nrf2-dependent manner. Selenium deficiency mainly resulted in increased plasma Zn levels. One putative mediator could be the metal regulatory transcription factor 1, which was up-regulated with an increasing Se supply and downregulated in Se-supplemented Nrf2 knockout mice.
Charge-density rearrangements after metal-to-ligand charge-transfer excitation in an iron photosensitizer are investigated by R. M Jay, A. Fohlisch et al. in their Communication (DOI: 10.1002/anie.201904761). By using time-resolved X-ray absorption spectroscopy, surprising covalency-effects are revealed that inhibit charge-separation at the intra-molecular level. Furthermore, the underlying mechanism is proposed to be generally in effect for all commonly used photosensitizers in light-harvesting applications, which challenges the common perception of electronic charge-transfer.
The presented study investigated the influence of microbial and biogeochemical processes on the physical transport related properties and the fate of microplastics in freshwater reservoirs. The overarching goal was to elucidate the mechanisms leading to sedimentation and deposition of microplastics in such environments. This is of importance, as large amounts of initially buoyant microplastics are found in reservoir sediments worldwide. However, the transport processes which lead to microplastics accumulation in sediments, were up to now understudied.
The impact of biofilm formation on the density and subsequent sedimentation of microplastics was investigated in the eutrophic Bautzen reservoirs (Chapter 2). Biofilms are complex microbial communities fixed to submerged surfaces through a slimy organic film. The mineral calcite was detected in the biofilms, which led to the
sinking of the overgrown microplastic particles. The calcite was of biogenic origin, most likely precipitated by sessile cyanobacteria within the biofilms.
Biofilm formation was also studied in the mesotrophic Malter reservoir. Unlike in Bautzen reservoir, biofilm formation did not govern the sedimentation of different microplastics in Malter reservoir (Chapter 3). Instead autumnal lake mixing led to
the formation of sinking aggregates of microplastics and iron colloids. Such colloids form when anoxic, iron-rich water from the hypolimnion mixes with the oxygenated epilimnetic waters. The colloids bind organic material from the lake water, which leads to the formation of large and sinking iron-organo flocs.
Hence, iron-organo floc formation and their influence on the buoyancy or burial of microplastics into sediments of Bautzen reservoir was studied in laboratory experiments (Chapter 4). Microplastics of different shapes (fiber, fragment, sphere) and sizes were readily incorporated into sinking iron-organo flocs. By this initially buoyant polyethylene microplastics were transported on top of sediments from Bautzen reservoir. Shortly after deposition, the microplastic bearing flocs started to subside and transported the pollutants into deeper sediment layers. The microplastics were not released from the sediments within two months of laboratory incubation.
The stability of floc microplastic deposition was further investigated employing experiments with the iron reducing model organism Shewanella oneidensis (Chapter 5). It was shown, that reduction or re-mineralization of the iron minerals did not affect the integrity of the iron-organo flocs. The organic matrix was stable under iron reducing conditions. Hence, no incorporated microplastics were released from the flocs. As similar processes are likely to take place in natural sediments, this might explain the previous described low microplastic release from the sediments.
This thesis introduced different mechanisms leading to the sedimentation of initially buoyant microplastics and to their subsequent deposition in freshwater reservoirs. Novel processes such as the aggregation with iron-organo flocs were identified and the understudied issue of biofilm densification through biogenic mineral formation was further investigated. The findings might have implications for the fate of microplastics within the river-reservoir system and outline the role of freshwater reservoirs as important accumulation zone for microplastics. Microplastics deposited in the sediments of reservoirs might not be transported further by through flowing river. Hence the study might contribute to better risk assessment and transport balances of these anthropogenic contaminants.