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Clustered codons that pair to low-abundance tRNA isoacceptors can form slow-translating regions in the mRNA and cause transient ribosomal arrest. We report that folding efficiency of the Escherichia coli multidomain protein Sufl can be severely perturbed by alterations in ribosome-mediated translational attenuation. Such alterations were achieved by global acceleration of the translation rate with tRNA excess in vitro or by synonymous substitutions to codons with highly abundant tRNAs both in vitro and in vivo. Conversely, the global slow-down of the translation rate modulated by low temperature suppresses the deleterious effect of the altered translational attenuation pattern. We propose that local discontinuous translation temporally separates the translation of segments of the peptide chain and actively coordinates their co-translational folding.
Tree size and herbivory determine below-canopy grass quality and species composition in savannahs
(2009)
Large single-standing trees are rapidly declining in savannahs, ecosystems supporting a high diversity of large herbivorous mammals. Savannah trees are important as they support both a unique flora and fauna. The herbaceous layer in particular responds to the structural and functional properties of a tree. As shrubland expands stem thickening occurs and large trees are replaced by smaller trees. Here we examine whether small trees are as effective in providing advantages for grasses growing beneath their crowns as large trees are. The role of herbivory in this positive tree- grass interaction is also investigated. We assessed soil and grass nutrient content, structural properties, and herbaceous species composition beneath trees of three size classes and under two grazing regimes in a South African savannah. We found that grass leaf content (N and P) beneath the crowns of particularly large (ca. 3.5 m) and very large trees (ca. 9 m) was as much as 40% greater than the same grass species not growing under a tree canopy, whereas nutrient contents of grasses did not differ beneath small trees (< 2.3 m). Moderate herbivory enhanced these effects slightly. Grass species composition differed beneath and beyond the tree canopy but not between tree size classes. As large trees significantly improve the grass nutrient quality for grazers in contrast to smaller trees, the decline of the former should be halted. The presence of trees further increases grass species diversity and patchiness by favouring shade- tolerant species. Both grazing wildlife and livestock will benefit from the presence of large trees because of their structural and functional importance for savannahs.
We analyzed published records of terrigenous dust flux from marine sediments off subtropical West Africa, the eastern Mediterranean Sea, and the Arabian Sea, and lake records from East Africa using statistical methods to detect trends, rhythms and events in Plio-Pleistocene African climate. The critical reassessment of the environmental significance of dust flux and lake records removes the apparent inconsistencies between marine vs. terrestrial records of African climate variability. Based on these results, major steps in mammalian and hominin evolution occurred during episodes of a wetter, but highly variable climate largely controlled by orbitally induced insolation changes in the low latitudes.
The zooplankton of oligotrophic lakes in North Patagonia is often dominated by mixotrophic ciliates, particularly Stentor amethystinus and Stentor araucanus. Therefore, we tested whether Stentor spp. (i) is an important food for juvenile endemic (Cheirodon australe, Galaxias maculatus, Odontesthes mauleanum, Percichthys trucha) and introduced (Oncorhynchus mykiss) fish species, and (ii) represents a remarkable grazer of bacteria. Ingestion rates of fish estimated by disappearance of Stentor in feeding experiments ranged between 8 (G. maculatus) and 53 (C australe) ciliates per fish and day, and assimilation rates measured by using radioactively labelled Stentor ranged between 3 (P. trucha) and 52 (C australe) ciliates per fish and day. However, although we detected the consumption of Stentor by fish, the daily consumption amounted to at most 0.2% of the fish biomass which can not cover the energy requirement of the fish. Furthermore, the daily consumption was equivalent to a maximum of 1.6% of the Stentor standing stock so that fish predation does not seem to be an important mortality factor for the ciliates. The clearance rate of Stentor sp. on natural bacteria was on average 3.8 mu l cil(-1) h(-1). The daily ingestion (mean 3.9 ngC cil(-1) d(-1)) was about 3.5% of the individual biomass of Stentor sp. Therefore, bacteria ingestion might explain a ciliate growth rate of appr. 1% d(-1), which was about 17% of the photosynthesis of endosymbiotic algae. The maximum density of Stentor sp. in the take could ingest about 1 mu g C L-1 d(-1) bacteria which is only 3% of average bacterial production. Thus, grazing by Stentor sp. does not seem to be a main loss factor for the bacteria.
Tuning the thickness of polymer brushes grafted from nonlinearly growing multilayer assemblies
(2009)
A new versatile method for tuning the thickness of surface-tethered polymer brushes is introduced. It is based on the combination of polyelectrolyte multilayer deposition and surface-initiated atom transfer radical polymerization. To control the thickness of the brushes, the nonlinear growth of certain polyelectrolyte multilayer systems is exploited. The method is demonstrated to work with different polyelectrolytes and different monomers. The relevance for applications is demonstrated by cell adhesion experiments oil grafted thermoresponsive polymer layers with varying thickness.
We characterize the entanglement in position and momentum of photon pairs generated in type-II parametric down- conversion. Coincidence maps of the photon positions in the near-field and far-field planes are observed in two transverse dimensions using scanning fiber probes. We estimate the covariance matrix of an effective two-mode system and apply criteria for entanglement based on covariance matrices to certify space-momentum entanglement. The role of higher- order spatial modes for observing spatial entanglement between the two photons is discussed.
Two-photon fluorescence lifetime imaging of intracellular chloride in cockroach salivary glands
(2009)
We present a model study that investigates to what extent it is possible to introduce ENSO variability to an Earth system Model of Intermediate Complexity (EMIC). The Zebiak-Cane ENSO model is dynamically coupled to the EMIC CLIMBER-3 alpha, which by itself exhibits no interannual or multidecadal variability. ENSO variability is introduced to CLIMBER-3 alpha by adding ENSO-related sea surface temperature anomalies to the upper layers of the model ocean. For the other coupling direction, changes in the mean CLIMBER-3 alpha climate on decadal time scales are used to change the background state of the ENSO model, achieving a two-way coupling. We compare typical ENSO-related patterns of a fully coupled pre-industrial model run to reanalysis data and point out the possibilities and limitations of this model configuration. Although introduced ENSO-related SST anomalies and other related variables like the Southern Oscillation Index are well reproduced by the EMIC in the forcing domain, teleconnections to other regions are damped, especially in meridional direction. The reason for this limitation is the atmospheric model, which does not sufficiently resolve the necessary transport mechanisms. Despite this limitation the presented coupling method may still be a useful tool in combination with higher resolution atmospheric models as being in development for the successor model CLIMBER-3 and possibly other EMICs.