Refine
Has Fulltext
- yes (27) (remove)
Year of publication
- 2018 (27) (remove)
Document Type
- Doctoral Thesis (24)
- Postprint (3)
Is part of the Bibliography
- yes (27)
Keywords
- DNA Origami (2)
- DNA origami (2)
- Katalyse (2)
- Nanopartikel (2)
- aptamers (2)
- block copolymer (2)
- catalysis (2)
- fiber etching (2)
- 3D printing (1)
- ACC (1)
- ADMET (1)
- ATRP (1)
- Alkyd resin (1)
- Alkydharze (1)
- Alkylpyridinium salts (1)
- Alkylpyridinium-Salze (1)
- Aluminiumoberfläche (1)
- Aminosäuren (1)
- Anisotrope Kolloide (1)
- Aptamere (1)
- Assemblierung (1)
- Biomarker (1)
- Biomineralisierung (1)
- Birke (1)
- Block-Copolymere (1)
- Block-copolymer (1)
- Blockcopolymer (1)
- C-reactive (1)
- C-reaktives Protein (1)
- CN materials (1)
- CN-Materialien (1)
- Cobalt Nanopartikeln (1)
- Collision cross-section (1)
- DNA (1)
- DNS (1)
- Diamondoide (1)
- Diarylheptanoide (1)
- Diffusion (1)
- Dissoziative Elektronenanlagerung (1)
- Disulfide (1)
- Druckfarben (1)
- Eisen-Kohlenstoff-Nanoröhrchen-Katalysatoren (1)
- Energiespeicher (1)
- Enzym (1)
- Faser-Bragg-Gitter (1)
- Faserätzen (1)
- Fettsäuren (1)
- Fischer-Tropsch Synthesis (1)
- Fischer-Tropsch-Synthese (1)
- Fluoreszenzmikroskopie (1)
- Flüssigkeitszerstäubung (1)
- Flüssigphasenkatalyse (1)
- Funktionalisierte Ölsäuremethylester (1)
- Funktionalisierung von Katalysatoren (1)
- Förster resonance energy transfer (1)
- Förster-Resonanzenergietransfer (1)
- Glukoseoxidation (1)
- Gold-Kohlenstoff-Katalysatoren (1)
- Helicen (1)
- Heteroatom-Modifikation (1)
- Himbeerketon (1)
- Hydrogelen (1)
- Hydrogenolyse (1)
- IR-MALDI (1)
- Ion mobility spectrometry (1)
- Ionenmobilitätsspektrometrie (1)
- Ionisationspotential (1)
- Ionische Flüssigkeit (1)
- Ionische Flüssigkeiten (1)
- Ionisierungsenergie (1)
- Kohlenstoffmaterial (1)
- Kohlenstoffträger (1)
- Korrelationsfunktion (1)
- Kraft lignin hydrogenolysis (1)
- Kraftlignin (1)
- Laserablation-ICP-MS (1)
- Ligation (1)
- Lignin (1)
- Liquid dispersion (1)
- Lösungsmittel-thermisches Tempern (1)
- Magnetresonanztomographie (1)
- Makrozyklen (1)
- Metal Chalcogenides (1)
- Metallchalkogenide (1)
- Mikrokontaktdruck (1)
- Mikromanipulation (1)
- Molecular dynamics (1)
- Molekulardynamik (1)
- NHC (1)
- Nanoparticles (1)
- Nickel-Kohlenstoff-Katalysatoren (1)
- Oberflächenchemie (1)
- Organic photovoltaic Cell (1)
- Organische Photovoltaikzelle (1)
- PLA (1)
- Patchy Partikel (1)
- Peptiden (1)
- Peptides (1)
- Perylen (1)
- Phase transitions (1)
- Phasenübergänge (1)
- Photochemie (1)
- Photoelektronenspektroskopie (1)
- Photoionisation (1)
- Photokatalyse (1)
- Plasmonik (1)
- Polyelektrolyte (1)
- Polymer (1)
- Polymerchemie (1)
- Polymere (1)
- Polymerisation (1)
- Polyzwitterion (1)
- Post-Modifikationen (1)
- Punkt-für-Punkt-Einschreibemethode (1)
- ROMP (1)
- Radiosensibilisator (1)
- Rasterkraftmikroskopie (1)
- Resonanz-Raman-Spektroskopie (1)
- Rinde (1)
- Schwingungsaufgelöste UV/VIS-Spektroskopie (1)
- Selbstorganisation (1)
- Shadowgraphie (1)
- Shadowgraphy (1)
- Silika Partikel (1)
- Stoßquerschnitt (1)
- Structure elucidation (1)
- Strukturaufklärung (1)
- Supramolekular (1)
- Syngas Hydrogenation (1)
- Syngashydrierung (1)
- Tandemmassenspektrometrie (1)
- UV (1)
- Umweltreaktion (1)
- Wasser auf Aluminiumoxid (1)
- Zeitabhängige Dichtefunktionaltheorie (1)
- Zellgewebe (1)
- Zellmarkierung (1)
- alumina (1)
- amino acids (1)
- amorphes Calciumcarbonat (1)
- anisotropic colloids (1)
- anti-fouling materials (1)
- assembly (1)
- asymmetric (1)
- asymmetrisch (1)
- atomic force microscopy (1)
- bark (1)
- begrenzte Polymerisation (1)
- biomarker (1)
- biomaterials (1)
- birch (1)
- block copolymers (1)
- c-reactive protein (1)
- calcium phosphate (1)
- calcium phosphate hybrid material (1)
- carbon material (1)
- carbon supports (1)
- catalyst functionalization (1)
- cell labeling probe (1)
- cellular tissue (1)
- chitosan (1)
- cobalt nanoparticles (1)
- colloid chemistry (1)
- confined polymerization (1)
- controlled polymerization (1)
- correlation function (1)
- diamondoid (1)
- diffusion (1)
- dip-coating (1)
- dissociative electron attachment (1)
- disulfide (1)
- dünne Filme (1)
- emperical potential structure refinement (1)
- energy storage (1)
- environmental response (1)
- enzyme (1)
- fatty acids (1)
- fiber Bragg graiting (1)
- fiber Bragg gratings (1)
- fiber optical sensor (1)
- fiber-optical sensors (1)
- fluorescence microscopy (1)
- functionalized methyl oleate (1)
- gelatin (1)
- glucose oxidation (1)
- gold-carbon catalysts (1)
- helicene (1)
- heteroatom modification (1)
- hierarchical porosity (1)
- hierarchische Porosität (1)
- hydrogel (1)
- hydrogels (1)
- hydrolysis (1)
- ionic liquids (1)
- ionic liquiod (1)
- ionization energy (1)
- ionization potential (1)
- iron-carbon nanotube catalysts (1)
- kolloidchemie (1)
- kontrollierte Polymerisation (1)
- lignin (1)
- liquid-phase catalysis (1)
- macrocycles (1)
- magnetic nanoparticles (1)
- magnetic resonance imaging (1)
- magnetische Nanopartikel (1)
- metal organic framework (1)
- metallorganischen Gerüstverbindungen (1)
- microcontact printing (1)
- micromanipulation (1)
- nachhaltige Energiespeichermaterialien (1)
- nanoparticles (1)
- nanostructure fabrication (1)
- nickel-carbon catalysts (1)
- obere kritische Lösetemperatur (1)
- optischer Fasersensor (1)
- patchy particles (1)
- perylene (1)
- photo ionization (1)
- photocatalysis (1)
- photochemistry (1)
- photoelectron spectroscopy (1)
- photonic crystall (1)
- photonischer Kristall (1)
- plasmonics (1)
- point-by-point-inscription method (1)
- poly(lactic acid) (1)
- polyelectrolytes (1)
- polymer (1)
- polymer chemistry (1)
- polymer degradation (1)
- polymerization (1)
- polymers (1)
- polysulfabetaine (1)
- polysulfobetaine (1)
- polyzwitterion (1)
- polyzwitterions (1)
- post-modification (1)
- printing inks (1)
- radiosensitizer (1)
- raspberry ketone (1)
- resonance Raman spectroscopy (1)
- ring-opening polymerization (1)
- ringöffnende Polymerisation (1)
- self-assembly (1)
- sichtbares Licht Photokatalyse (1)
- silica particles (1)
- solvo-thermal annealing (1)
- sortase-mediated ligation (1)
- stability (1)
- supramolecular (1)
- surface science (1)
- sustainable energy storage materials (1)
- tandem mass spectrometry (1)
- theoretical chemistry (1)
- theoretische Chemie (1)
- thermoresponsiv (1)
- thermoresponsive (1)
- thin films (1)
- time-dependent density functional theory (1)
- ultra-fast laser inscription (1)
- upper critical solution temperature (1)
- vibrationally resolved electronic spectroscopy (1)
- visible light photocatalysis (1)
- water at alumina (1)
Institute
- Institut für Chemie (27) (remove)
In der vorliegenden Arbeit werden Wege zur Gewinnung verschiedener phenolischer Substanzen wie Lignin, Diarylheptanoide und 4-(3-Oxobutyl)phenol (Himbeerketon) aus dem Stamm der Hängebirke (Betula pendula) aufgezeigt. Durch Methacrylierung des 4-(3-Oxobutyl)phenols wurde ein Monomer erzeugt, welches mittels freier radikalischer Masse- und Lösungspolymerisation, sowie enzymatischer Polymerisation polymerisiert werden kann.
Eine erste Isolierung von Bestandteilen wurde durch Extraktion von Innenholz bzw. Rinde mit Methanol erzielt. Die in Methanol unlöslichen Bestandteile des Innenholzes und der Rinde wurden anschließend mit ausgewählten ionischen Flüssigkeiten extrahiert. Es wurde ein Verfahren zum selektiven Trennen der mit diesen ionischen Flüssigkeiten extrahierten Bestandteile in Cellulose, Hemicellulose, Lignin und mit Ethylacetat extrahierbare Bestandteile entwickelt. Hierdurch war es möglich, sowohl die verwendeten ionischen Flüssigkeiten als auch das Innenholz und die Rinde hinsichtlich ihres Extraktionsverhaltens miteinander zu vergleichen.
Ferner wurden verschiedene Strategien aufgezeigt, um insgesamt drei Spezies an Diarylheptanoiden aus dem methanolischen Extrakt der Rinde zu isolieren. Eines der gefundenen Diarylheptanoide (5 Hydroxy-1,7-bis(4-hydroxyphenyl)-3-heptanon) wurde via Retroaldolreaktion in 4 (3 Oxobutyl)phenol (Himbeerketon) und 3 (4 Hydroxyphenyl)propanal gespalten.
Es wurde die Verwendung des 4-(3-Oxobutyl)phenol als Monomerbestandteil untersucht. Hierfür wurde 4-(3-Oxobutyl)phenylmethacrylat synthetisiert und Wege zur Reinigung mittels Säulenchromatographie und Umkristallisation aufgezeigt. Anschließend wurde Poly(4-(3-oxobutyl)phenylmethacrylat) (PObMA) und Polybenzylmethacrylats (PBzMA) aus Massen- und Lösungspolymerisation hergestellt. Die Ausbeuten an PObpMA im Vergleich zum PBzMA liegen bei gleichen Reaktionsbedingungen auf gleichem Niveau. Im Kontrast hierzu ist der Polymerisationsgrad aus freier radikalischer Polymerisation in Masse des PObpMA im Vergleich zum PBzMA um den Faktor 3,7 größer. Die Glasübergangstemperaturen des PObpMA liegen bei gleichen Reaktionsbedingungen sowohl bei freier radikalischer Polymerisation in Masse, als auch bei Lösungspolymerisation über denen des PBzMA. Darüber hinaus wurde die Polymerisation von 4-(3-Oxobutyl)phenylmethacrylat und Benzylmethacrylat mit einem Initiatorsystem bestehend aus Meerrettichperoxidase, Acetylaceton und Wasserstoffperoxid bei Raumtemperatur beschrieben. Die mit enzymatischem Initiatorsystem erzeugten Produkte zeigten starke Übereinstimmung mit Produkten aus Lösungspolymerisationen, welche mit Azobis(isobutyronitril) initiiert wurden.
Health effects, attributed to the environmental pollution resulted from using solvents such as benzene, are relatively unexplored among petroleum workers, personal use, and laboratory researchers. Solvents can cause various health problems, such as neurotoxicity, immunotoxicity, and carcinogenicity. As such it can be absorbed via epidermal or respiratory into the human body resulting in interacting with molecules that are responsible for biochemical and physiological processes of the brain.
Owing to the ever-growing demand for finding a solution, an Ionic liquid can use as an alternative solvent. Ionic liquids are salts in a liquid state at low temperature (below 100 C), or even at room temperature. Ionic liquids impart a unique architectural platform, which has been interesting because of their unusual properties that can be tuned by simple ways such as mixing two ionic liquids.
Ionic liquids not only used as reaction solvents but they became a key developing for novel applications based on their thermal stability, electric conductivity with very low vapor pressure in contrast to the conventional solvents.
In this study, ionic liquids were used as a solvent and reactant at the same time for the novel nanomaterials synthesis for different applications including solar cells, gas sensors, and water splitting.
The field of ionic liquids continues to grow, and become one of the most important branches of science. It appears to be at a point where research and industry can work together in a new way of thinking for green chemistry and sustainable production.
Innerhalb dieser Doktorarbeit wurde eine neuartige Mikromanipulationstechnik für die lokale Flüssigkeitsabgabe am komplexen Drüsengewebe der Schabe P. americana charakterisiert und für die damit verbundene gezielte Manipulation von einzelnen Zellen in einem Zellkomplex (Gewebe) angewandt. Bei dieser Mikromanipulationstechnik handelt es sich um die seit 2009 bekannte nanofluidische Rasterkraftmikroskopie (FluidFM = fluidic force microscopy). Dabei werden sehr kleine mikrokanälige Rasterkraftspitzen bzw. Mikro-/Nanopipetten mit einer Öffnung zwischen 300 nm und 2 µm verwendet, mit denen es möglich ist, sehr kleine Volumina im Pikoliter- bis Femtoliter-Bereich (10-12 L – 10-15 L) gezielt und ortsgenau abzugeben. Das Ziel dieser Arbeit war die Analyse zellulärer Prozesse, wie z. B. Zell-Zell-Kommunikation oder Signalweiterleitung, zwischen benachbarten Zellen unter Zuhilfenahme der Fluoreszenzmikroskopie. Mit dieser Methode können die Zellen und ihre Bestandteile mittels vorheriger Farbstoffbeladung unter einem Mikroskop mit hohem Kontrast optisch dargestellt werden. Mit Hilfe der Fluoreszenzmikroskopie sollten schlussendlich die zellulären Reaktionen innerhalb des Gewebes nach der lokalen Manipulation visualisiert werden.
Zunächst wurde die Anwendung des Systems an Luft und wässriger Umgebung beschrieben. In diesem Zusammenhang wurde eine Reinigungs- und Beladungsmethode entwickelt, mit der es möglich war, die kostspieligen Mikro-/Nanopipetten zu reinigen und anschließend mehrmals wiederzuverwenden. Hierzu wurde eine alternative Methode getestet, mit der das Diffusionsverhalten von Farbstoffmolekülen in unterschiedlichen Medien untersucht werden kann. Des Weiteren wurden die Systemparameter optimiert, welche nötig sind, um zwischen der Probenoberfläche und der Pipette einen guten Pipettenöffnungs-abschluss zu erhalten. Dieser Abschluss ist essentiell, damit die abgegebene Flüssigkeit ausschließlich in der Abgaberegion mit der Probe wechselwirkt und die darauffolgenden Reaktionen nur innerhalb des Gewebes erfolgen, da ansonsten die Zell-Zell-Signalweiterleitung zwischen den Zellen nicht eindeutig nachvollzogen werden kann. Diese interzelluläre Kommunikation wurde anhand zweier sekundärer Botenstoffe (Ca2+ und NO) untersucht. Hierbei war es möglich einzelne lokale Reaktionen zu detektieren, welche sich über weitere Zellen ausbreiteten. Schlussendlich wurde die Fertigung einer speziellen Injektionspipette beschrieben, welche an zwei biologischen Systemen getestet wurde.
This research addressed the question, if it is possible to simplify current microcontact printing systems for the production of anisotropic building blocks or patchy particles, by using common chemicals while still maintaining reproducibility, high precision and tunability of the Janus-balance
Chapter 2 introduced the microcontact printing materials as well as their defined electrostatic interactions. In particular polydimethylsiloxane stamps, silica particles and high molecular weight polyethylenimine ink were mainly used in this research. All of these components are commercially available in large quantities and affordable, which gives this approach a huge potential for further up-scaling developments. The benefits of polymeric over molecular inks was described including its flexible influence on the printing pressure. With this alteration of the µCP concept, a new method of solvent assisted particle release mechanism enabled the switch from two-dimensional surface modification to three-dimensional structure printing on colloidal silica particles, without changing printing parameters or starting materials. This effect opened the way to use the internal volume of the achieved patches for incorporation of nano additives, introducing additional physical properties into the patches without alteration of the surface chemistry.
The success of this system and its achievable range was further investigated in chapter 3 by giving detailed information about patch geometry parameters including diameter, thickness and yield. For this purpose, silica particles in a size range between 1µm and 5µm were printed with different ink concentrations to change the Janus-balance of these single patched particles. A necessary intermediate step, consisting of air-plasma treatment, for the production of trivalent particles using "sandwich" printing was discovered and comparative studies concerning the patch geometry of single and double patched particles were conducted. Additionally, the usage of structured PDMS stamps during printing was described. These results demonstrate the excellent precision of this approach and opens the pathway for even greater accuracy as further parameters can be finely tuned and investigated, e.g. humidity and temperature during stamp loading.
The performance of these synthesized anisotropic colloids was further investigated in chapter 4, starting with behaviour studies in alcoholic and aqueous dispersions. Here, the stability of the applied patches was studied in a broad pH range, discovering a release mechanism by disabling the electrostatic bonding between particle surface and polyelectrolyte ink. Furthermore, the absence of strong attractive forces between divalent particles in water was investigated using XPS measurements. These results lead to the conclusion that the transfer of small PDMS oligomers onto the patch surface is shielding charges, preventing colloidal agglomeration. However, based on this knowledge, further patch modifications for particle self-assembly were introduced including physical approaches using magnetic nano additives, chemical patch functionalization with avidin-biotin or the light responsive cyclodextrin-arylazopyrazoles coupling as well as particle surface modification for the synthesis of highly amphiphilic colloids. The successful coupling, its efficiency, stability and behaviour in different solvents were evaluated to find a suitable coupling system for future assembly experiments. Based on these results the possibility of more sophisticated structures by colloidal self-assembly is given.
Certain findings needed further analysis to understand their underlying mechanics, including the relatively broad patch diameter distribution and the decreasing patch thickness for smaller silica particles. Mathematical assumptions for both effects are introduced in chapter 5. First, they demonstrate the connection between the naturally occurring particle size distribution and the broadening of the patch diameter, indicating an even higher precision for this µCP approach. Second, explaining the increase of contact area between particle and ink surface due to higher particle packaging, leading to a decrease in printing pressure for smaller particles.
These calculations ultimately lead to the development of a new mechanical microcontact printing approach, using centrifugal forces for high pressure control and excellent parallel alignment of printing substrates. First results with this device and the comparison with previously conducted by-hand experiments conclude this research. It furthermore displays the advantages of such a device for future applications using a mechanical printing approach, especially for accessing even smaller nano particles with great precision and excellent yield.
In conclusion, this work demonstrates the successful adjustment of the µCP approach using commercially available and affordable silica particles and polyelectrolytes for high flexibility, reduced costs and higher scale-up value. Furthermore, its was possible to increase the modification potential by introducing three-dimensional patches for additional functionalization volume. While keeping a high colloidal stability, different coupling systems showed the self-assembly capabilities of this toolbox for anisotropic particles.
New bio-based polymers
(2018)
Redox-responsive polymers, such as poly(disulfide)s, are a versatile class of polymers with potential applications including gene- and drug-carrier systems. Their degradability under reductive conditions allows for a controlled response to the different redox states that are present throughout the body. Poly(disulfide)s are typically synthesized by step growth polymerizations. Step growth polymerizations, however, may suffer from low conversions and therefore low molar masses, limiting potential applications. The purpose of this thesis was therefore to find and investigate new synthetic routes towards the synthesis of amino acid-based poly(disulfide)s.
The different routes in this thesis include entropy-driven ring opening polymerizations of novel macrocyclic monomers, derived from cystine derivatives. These monomers were obtained with overall yields of up to 77% and were analyzed by mass spectrometry as well as by 1D and 2D NMR spectroscopy. The kinetics of the entropy-driven ring-opening metathesis polymerization (ED-ROMP) were thoroughly investigated in dependence of temperature, monomer concentration, and catalyst concentration. The polymerization was optimized to yield poly(disulfide)s with weight average molar masses of up to 80 kDa and conversions of ~80%, at the thermodynamic equilibrium. Additionally, an alternative metal free polymerization, namely the entropy-driven ring-opening disulfide metathesis polymerization (ED-RODiMP) was established for the polymerization of the macrocyclic monomers. The effect of different solvents, concentrations and catalyst loadings on the polymerization process and its kinetics were studied. Polymers with very high weight average molar masses of up to 177 kDa were obtained. Moreover, various post-polymerization reactions were successfully performed.
This work provides the first example of the homopolymerization of endo-cyclic disulfides by ED-ROMP and the first substantial study into the kinetics of the ED-RODiMP process.
Photocatalysis is considered significant in this new energy era, because the inexhaustibly abundant, clean, and safe energy of the sun can be harnessed for sustainable, nonhazardous, and economically development of our society. In the research of photocatalysis, the current focus was held by the design and modification of photocatalyst.
As one of the most promising photocatalysts, g-C3N4 has gained considerable attention for its eye-catching properties. It has been extensively explored in photocatalysis applications, such as water splitting, organic pollutant degradation, and CO2 reduction. Even so, it also has its own drawbacks which inhibit its further application. Inspired by that, this thesis will mainly present and discuss the process and achievement on the preparation of some novel photocatalysts and their photocatalysis performance. These materials were all synthesized via the alteration of classic g-C3N4 preparation method, like using different pre-compositions for initial supramolecular complex and functional group post-modification. By taking place of cyanuric acid, 2,5-Dihydroxy-1,4-benzoquinone and chloranilic acid can form completely new supramolecular complex with melamine. After heating, the resulting products of the two complex shown 2D sheet-like and 1D fiber-like morphologies, respectively, which maintain at even up to high temperature of 800 °C. These materials cover crystals, polymers and N-doped carbons with the increase of synthesis temperature. Based on their different pre-compositions, they show different dye degradation performances. For CLA-M-250, it shows the highest photocatalytic activity and strong oxidation capacity. It shows not only great photo-performance in RhB degradation, but also oxygen production in water splitting. In the post-modification method, a novel photocatalysis solution was proposed to modify carbon nitride scaffold with cyano group, whose content can be well controlled by the input of sodium thiocyanate. The cyanation modification leads to narrowed band gap as well as improved photo-induced charges separation. Cyano group grafted carbon nitride thus shows dramatically enhanced performance in the photocatalytic coupling reaction between styrene and sodium benzenesulfinate under green light irradiation, which is in stark contrast with the inactivity of pristine g-C3N4.
Deoxyribonucleic acid (DNA) is the carrier of human genetic information and is exposed to environmental influences such as the ultraviolet (UV) fraction of sunlight every day. The photostability of the DNA against UV light is astonishing. Even if the DNA bases have a strong absorption maximum at around 260 nm/4.77 eV, their quantum yield of photoproducts remains very low 1. If the photon energies exceed the ionization energy (IE) of the nucleobases ( ̴ 8-9 eV) 2, the DNA can be severely damaged. Photoexcitation and -ionization reactions occur, which can induce strand breaks in the DNA. The efficiency of the excitation and ionization induced strand breaks in the target DNA sequences are represented by cross sections. If Si as a substrate material is used in the VUV irradiation experiments, secondary electrons with an energy below 3.6 eV are generated from the substrate. This low energy electrons (LEE) are known to induce dissociative electron attachment (DEA) in DNA and with it DNA strand breakage very efficiently. LEEs play an important role in cancer radiation therapy, since they are generated secondarily along the radiation track of ionizing radiation.
In the framework of this thesis, different single stranded DNA sequences were irradiated with 8.44 eV vacuum UV (VUV) light and cross sections for single strand breaks (SSB) were determined. Several sequences were also exposed to secondary LEEs, which additionally contributed to the SSBs. First, the cross sections for SSBs depending on the type of nucleobases were determined. Both types of DNA sequences, mono-nucleobase and mixed sequences showed very similar results upon VUV radiation. The additional influence of secondarily generated LEEs resulted in contrast in a clear trend for the SSB cross sections. In this, the polythymine sequence had the highest cross section for SSBs, which can be explained by strong anionic resonances in this energy range. Furthermore, SSB cross sections were determined as a function of sequence length. This resulted in an increase in the strand breaks to the same extent as the increase in the geometrical cross section. The longest DNA sequence (20 nucleotides) investigated in this series, however, showed smaller cross section values for SSBs, which can be explained by conformational changes in the DNA. Moreover, several DNA sequences that included the radiosensitizers 5-Bromouracil (5BrU) and 8-Bromoadenine (8BrA) were investigated and the corresponding SSB cross sections were determined. It was shown that 5BrU reacts very strongly to VUV radiation leading to high strand break yields, which showed in turn a strong sequence-dependency. 8BrA, on the other hand, showed no sensitization to the applied VUV radiation, since almost no increase in strand breakage yield was observed in comparison to non-modified DNA sequences.
In order to be able to identify the mechanisms of radiation damage by photons, the IEs of certain DNA sequences were further explored using photoionization tandem mass spectrometry. By varying the DNA sequence, both the IEs depending on the type of nucleobase as well as on the DNA strand length could be identified and correlated to the SSB cross sections. The influence of the IE on the photoinduced reaction in the brominated DNA sequences could be excluded.
Amorphous calcium carbonate(ACC) is a wide spread biological material found in many organisms, such as sea Urchins and mollusks, where it serves as either a precursor phase for the crystalline biominerals or is stabilized and used in the amorphous state. As ACC readily crystallizes, stabilizers such as anions, cations or macromolecules are often present to avoid or delay unwanted crystallization. Furthermore, additives often control the properties of the materials to suit the specific function needed for the organism. E.g. cystoliths in leaves that scatter light to optimize energy uptake from the sun or calcite/aragonite crystals used in protective shells in mussels and gastropods. Lifetime of the amorphous phase is controlled by the kinetic stability against crystallization. This has often been linked to water which plays a role in the mobility of ions and hence the probability of forming crystalline nuclei to initiate crystallization. However, it is unclear how the water molecules are incorporated within the amorphous phase, either as liquid confined in pores, as structural water binding to the ions or as a mixture of both. It is also unclear how this is perturbed when additives are added, especially Mg2+, one the most common additives found in biogenic samples. Mg2+ are expected to have a strong influence on the water incorporated into ACC, given the high energy barrier to dehydration of magnesium ions compared to calcium ions in solution.
During the last 10-15 years, there has been a large effort to understand the local environment of the ions/molecules and how this affects the properties of the amorphous phase. But only a few aspects of the structure have so far been well-described in literature. The reason for this is partly caused by the low stability of ACC if exposed to air, where it tends to crystallize within minutes and by the limited quantities of ACC produced in traditional synthesis routes. A further obstacle has been the difficulty in modeling the local structure based on experimental data. To solve the problem of stability and sample size, a few studies have used stabilizers such as Mg2+ or OH- and severely dehydrated samples so as to stabilize the amorphous state, allowing for combined neutron and x-ray analysis to be performed. However, so far, a clear description of the local environments of water present in the structure has not been reported.
In this study we show that ACC can be synthesized without any stabilizing additives in quantities necessary for neutron measurements and that accurate models can be derived with the help of empirical-potential structural refinement. These analyses have shown that there is a wide range of local environments for all of the components in the system suggesting that the amorphous phase is highly inhomogeneous, without any phase separation between ions and water. We also showed that the water in ACC is mainly structural and that there is no confined or liquid-like water present in the system. Analysis of amorphous magnesium carbonate also showed that there is a large difference in the local structure of the two cations and that Mg2+ surprisingly interacts with significantly less water molecules then Ca2+ despite the higher dehydration energy. All in all, this shows that the role of water molecules as a structural component of ACC, with a strong binding to cat- and anions probably retard or prevents the crystallization of the amorphous phase.
The utilization of lignin as renewable electrode material for electrochemical energy storage is a sustainable approach for future batteries and supercapacitors. The composite electrode was fabricated from Kraft lignin and conductive carbon and the charge storage contribution was determined in terms of electrical double layer (EDL) and redox reactions. The important factors at play for achieving high faradaic charge storage capacity contribute to high surface area, accessibility of redox sites in lignin and their interaction with conductive additives. A thinner layer of lignin covering the high surface area of carbon facilitates the electron transfer process with a shorter pathway from the active sites of nonconductive lignin to the current collector leading to the improvement of faradaic charge storage capacity.
Composite electrodes from lignin and carbon would be even more sustainable if the fluorinated binder can be omitted. A new route to fabricate a binder-free composite electrode from Kraft lignin and high surface area carbon has been proposed by crosslinking lignin with glyoxal. A high molecular weight of lignin is obtained to enhance both electroactivity and binder capability in composite electrodes. The order of the processing step of crosslinking lignin on the composite electrode plays a crucial role in achieving a stable electrode and high charge storage capacity. The crosslinked lignin based electrodes are promising since they allow for more stable, sustainable, halogen-free and environmentally benign devices for energy storage applications. Furthermore, improvement of the amount of redox active groups (quinone groups) in lignin is useful to enhance the capacity in lithium battery applications. Direct oxidative demethylation by cerium ammonium nitrate has been carried out under mild conditions. This proves that an increase of quinone groups is able to enhance the performance of lithium battery. Thus, lignin is a promising material and could be a good candidate for application in sustainable energy storage devices.
Synthesis of artificial building blocks for sortase-mediated ligation and their enzymatic linkage
(2018)
The enzyme Sortase A catalyzes the formation of a peptide bond between the recognition sequence LPXTG and an oligoglycine. While manifold ligations between proteins and various biomolecules, proteins and small synthetic molecules as well as proteins and surfaces have been reported, the aim of this thesis was to investigate the sortase-catalyzed linkage between artificial building blocks. Hence, this could pave the way for the use of sortase A for tasks from a chemical point of view and maybe even materials science.
For the proof of concept, the studied systems were kept as simple as possible at first by choosing easily accessible silica NPs and commercially available polymers. These building blocks were functionalized with peptide motifs for sortase-mediated ligation. Silica nanoparticles were synthesized with diameters of 60 and 200 nm and surface modified with C=C functionalities. Then, peptides bearing a terminal cysteine were covalently linked by means of a thiol-ene reaction. 60 nm SiO2 NPs were functionalized with pentaglycines, while peptides with LPETG motif were linked to 200 nm silica particles. Polyethyleneglycol (PEG) and poly(N isopropylacrylamide) (PNIPAM) were likewise functionalized with peptides by thiol-ene reaction between cysteine residues and C=C units in the polymer end groups. Hence, G5-PEG and PNIPAM-LPETG conjugates were obtained. With this set of building blocks, NP–polymer hybrids, NP–NP, and polymer–polymer structures were generated by sortase-mediated ligation and the product formation shown by transmission electron microscopy, MALDI-ToF mass spectrometry and dynamic light scatting, among others. Thus, the linkage of these artificial building blocks by the enzyme sortase A could be demonstrated.
However, when using commercially available polymers, the purification of the polymer–peptide conjugates was impossible and resulted in a mixture containing unmodified polymer. Therefore, strategies were developed for the own synthesis of pure peptide-polymer and polymer-peptide conjugates as building blocks for sortase-mediated ligation. The designed routes are based on preparing polymer blocks via RAFT polymerization from CTAs that are attached to N- or C-terminus, respectively, of a peptide. GG-PNIPAM was synthesized through attachment of a suitable RAFT CTA to Fmoc-GG in an esterification reaction, followed by polymerization of NIPAM and cleavage of the Fmoc protection group. Furthermore, several peptides were synthesized by solid-phase peptide synthesis. The linkage of a RAFT CTA (or
polymerization initiator) to the N-terminus of a peptide can be conducted in an automated fashion as last step in a peptide synthesizer. The synthesis of such a conjugate couldn’t be realized in the time frame of this thesis, but many promising strategies exist to continue this strategy using different coupling reagents. Such polymer building blocks can be used to synthesize protein-polymer conjugates catalyzed by sortase A and the approach can be carried on to the synthesis of block copolymers by using polymer blocks with peptide motifs on both ends.
Although the proof of concept demonstrated in this thesis only shows examples that can be also synthesized by exclusively chemical techniques, a toolbox of such building blocks will enable the future formation of new materials and pave the way for the application of enzymes in materials science. In addition to nanoparticle systems and block copolymers, this also includes combination with protein-based building blocks to form hybrid materials. Hence, sortase could become an enzymatic tool that complements established chemical linking technologies and provides specific peptide motifs that are orthogonal to all existing chemical functional groups.