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Background:
Plant phenotypic data shrouds a wealth of information which, when accurately analysed and linked
to other data types, brings to light the knowledge about the mechanisms of life. As phenotyping is a field of research
comprising manifold, diverse and time
‑consuming experiments, the findings can be fostered by reusing and combin‑
ing existing datasets. Their correct interpretation, and thus replicability, comparability and interoperability, is possible
provided that the collected observations are equipped with an adequate set of metadata. So far there have been no
common standards governing phenotypic data description, which hampered data exchange and reuse.
Results:
In this paper we propose the guidelines for proper handling of the information about plant phenotyping
experiments, in terms of both the recommended content of the description and its formatting. We provide a docu‑
ment called “Minimum Information About a Plant Phenotyping Experiment”, which specifies what information about
each experiment should be given, and a Phenotyping Configuration for the ISA
‑Tab format, which allows to practically
organise this information within a dataset. We provide examples of ISA
‑Tab
‑formatted phenotypic data, and a general
description of a few systems where the recommendations have been implemented.
Conclusions:
Acceptance of the rules described in this paper by the plant phenotyping community will help to
achieve findable, accessible, interoperable and reusable data.
XopJ is a Xanthomonas type III effector protein that promotes bacterial virulence on susceptible pepper plants through the inhibition of the host cell proteasome and a resultant suppression of salicylic acid (SA) - dependent defense responses. We show here that Nicotiana benthamiana leaves transiently expressing XopJ display hypersensitive response (HR) -like symptoms when exogenously treated with SA. This apparent avirulence function of XopJ was further dependent on effector myristoylation as well as on an intact catalytic triad, suggesting a requirement of its enzymatic activity for HR-like symptom elicitation. The ability of XopJ to cause a HR-like symptom development upon SA treatment was lost upon silencing of SGT1 and NDR1, respectively, but was independent of EDS1 silencing, suggesting that XopJ is recognized by an R protein of the CC-NBS-LRR class. Furthermore, silencing of NPR1 abolished the elicitation of HR-like symptoms in XopJ expressing leaves after SA application. Measurement of the proteasome activity indicated that proteasome inhibition by XopJ was alleviated in the presence of SA, an effect that was not observed in NPR1 silenced plants. Our results suggest that XopJ - triggered HR-like symptoms are closely related to the virulence function of the effector and that XopJ follows a two-signal model in order to elicit a response in the non-host plant N. benthamiana.
Landslides are frequent natural hazards in rugged terrain, when the resisting frictional force of the surface of rupture yields to the gravitational force. These forces are functions of geological and morphological factors, such as angle of internal friction, local slope gradient or curvature, which remain static over hundreds of years; whereas more dynamic triggering events, such as rainfall and earthquakes, compromise the force balance by temporarily reducing resisting forces or adding transient loads. This thesis investigates landslide distribution and orientation due to landslide triggers (e.g. rainfall) at different scales (6-4∙10^5 km^2) and aims to link rainfall movement with the landslide distribution. It additionally explores the local impacts of the extreme rainstorms on landsliding and the role of precursory stability conditions that could be induced by an earlier trigger, such as an earthquake.
Extreme rainfall is a common landslide trigger. Although several studies assessed rainfall intensity and duration to study the distribution of thus triggered landslides, only a few case studies quantified spatial rainfall patterns (i.e. orographic effect). Quantifying the regional trajectories of extreme rainfall could aid predicting landslide prone regions in Japan. To this end, I combined a non-linear correlation metric, namely event synchronization, and radial statistics to assess the general pattern of extreme rainfall tracks over distances of hundreds of kilometers using satellite based rainfall estimates. Results showed that, although the increase in rainfall intensity and duration positively correlates with landslide occurrence, the trajectories of typhoons and frontal storms were insufficient to explain landslide distribution in Japan. Extreme rainfall trajectories inclined northwestwards and were concentrated along some certain locations, such as coastlines of southern Japan, which was unnoticed in the landslide distribution of about 5000 rainfall-triggered landslides. These landslides seemed to respond to the mean annual rainfall rates.
Above mentioned findings suggest further investigation on a more local scale to better understand the mechanistic response of landscape to extreme rainfall in terms of landslides. On May 2016 intense rainfall struck southern Germany triggering high waters and landslides. The highest damage was reported at the Braunsbach, which is located on the tributary-mouth fan formed by the Orlacher Bach. Orlacher Bach is a ~3 km long creek that drains a catchment of about ~6 km^2. I visited this catchment in June 2016 and mapped 48 landslides along the creek. Such high landslide activity was not reported in the nearby catchments within ~3300 km^2, despite similar rainfall intensity and duration based on weather radar estimates. My hypothesis was that several landslides were triggered by rainfall-triggered flash floods that undercut hillslope toes along the Orlacher Bach. I found that morphometric features such as slope and curvature play an important role in landslide distribution on this micro scale study site (<10 km^2). In addition, the high number of landslides along the Orlacher Bach could also be boosted by accumulated damages on hillslopes due karst weathering over longer time scales.
Precursory damages on hillslopes could also be induced by past triggering events that effect landscape evolution, but this interaction is hard to assess independently from the latest trigger. For example, an earthquake might influence the evolution of a landscape decades long, besides its direct impacts, such as landslides that follow the earthquake. Here I studied the consequences of the 2016 Kumamoto Earthquake (MW 7.1) that triggered some 1500 landslides in an area of ~4000 km^2 in central Kyushu, Japan. Topography, i.e. local slope and curvature, both amplified and attenuated seismic waves, thus controlling the failure mechanism of those landslides (e.g. progressive). I found that topography fails in explaining the distribution and the preferred orientation of the landslides after the earthquake; instead the landslides were concentrated around the northeast of the rupture area and faced mostly normal to the rupture plane. This preferred location of the landslides was dominated mainly by the directivity effect of the strike-slip earthquake, which is the propagation of wave energy along the fault in the rupture direction; whereas amplitude variations of the seismic radiation altered the preferred orientation. I suspect that the earthquake directivity and the asymmetry of seismic radiation damaged hillslopes at those preferred locations increasing landslide susceptibility. Hence a future weak triggering event, e.g. scattered rainfall, could further trigger landslides at those damaged hillslopes.
Mit der Liberalisierung des Strommarkts, den unsicheren Aussichten in der Klimapolitik und stark schwankenden Preisen bei Brennstoffen, Emissionsrechten und Kraftwerkskomponenten hat bei Kraftwerksinvestitionen das Risikomanagement an Bedeutung gewonnen. Dies äußert sich im vermehrten Einsatz probabilistischer Verfahren. Insbesondere bei regulativen Risiken liefert der klassische, häufigkeitsbasierte Wahrscheinlichkeitsbegriff aber keine Handhabe zur Risikoquantifizierung. In dieser Arbeit werden Kraftwerksinvestitionen und -portfolien in Deutschland mit Methoden des Bayes'schen Risikomanagements bewertet. Die Bayes'sche Denkschule begreift Wahrscheinlichkeit als persönliches Maß für Unsicherheit. Wahrscheinlichkeiten können auch ohne statistische Datenanalyse allein mit Expertenbefragungen gewonnen werden. Das Zusammenwirken unsicherer Werttreiber wurde mit einem probabilistischen DCF-Modell (Discounted Cash Flow-Modell) spezifiziert und in ein Einflussdiagramm mit etwa 1200 Objekten umgesetzt. Da der Überwälzungsgrad von Brennstoff- und CO2-Kosten und damit die Höhe der von den Kraftwerken erwirtschafteten Deckungsbeiträge im Wettbewerb bestimmt werden, reicht eine einzelwirtschaftliche Betrachtung der Kraftwerke nicht aus. Strompreise und Auslastungen werden mit Heuristiken anhand der individuellen Position der Kraftwerke in der Merit Order bestimmt, d.h. anhand der nach kurzfristigen Grenzkosten gestaffelten Einsatzreihenfolge. Dazu wurden 113 thermische Großkraftwerke aus Deutschland in einer Merit Order vereinigt. Das Modell liefert Wahrscheinlichkeitsverteilungen für zentrale Größen wie Kapitalwerte von Bestandsportfolien sowie Stromgestehungskosten und Kapitalwerte von Einzelinvestitionen (Steinkohle- und Braunkohlekraftwerke mit und ohne CO2-Abscheidung sowie GuD-Kraftwerke). Der Wert der Bestandsportfolien von RWE, E.ON, EnBW und Vattenfall wird primär durch die Beiträge der Braunkohle- und Atomkraftwerke bestimmt. Erstaunlicherweise schlägt sich der Emissionshandel nicht in Verlusten nieder. Dies liegt einerseits an den Zusatzgewinnen der Atomkraftwerke, andererseits an den bis 2012 gratis zugeteilten Emissionsrechten, welche hohe Windfall-Profite generieren. Dadurch erweist sich der Emissionshandel in seiner konkreten Ausgestaltung insgesamt als gewinnbringendes Geschäft. Über die Restlaufzeit der Bestandskraftwerke resultiert ab 2008 aus der Einführung des Emissionshandels ein Barwertvorteil von insgesamt 8,6 Mrd. €. In ähnlicher Dimension liegen die Barwertvorteile aus der 2009 von der Bundesregierung in Aussicht gestellten Laufzeitverlängerung für Atomkraftwerke. Bei einer achtjährigen Laufzeitverlängerung ergäben sich je nach CO2-Preisniveau Barwertvorteile von 8 bis 15 Mrd. €. Mit höheren CO2-Preisen und Laufzeitverlängerungen von bis zu 28 Jahren würden 25 Mrd. € oder mehr zusätzlich anfallen. Langfristig erscheint fraglich, ob unter dem gegenwärtigen Marktdesign noch Anreize für Investitionen in fossile Kraftwerke gegeben sind. Zu Beginn der NAP 2-Periode noch rentable Investitionen in Braunkohle- und GuD-Kraftwerke werden mit der auslaufenden Gratiszuteilung von Emissionsrechten zunehmend unrentabler. Die Rentabilität wird durch Strommarkteffekte der erneuerbaren Energien und ausscheidender alter Gas- und Ölkraftwerke stetig weiter untergraben. Steinkohlekraftwerke erweisen sich selbst mit anfänglicher Gratiszuteilung als riskante Investition. Die festgestellten Anreizprobleme für Neuinvestitionen sollten jedoch nicht dem Emissionshandel zugeschrieben werden, sondern resultieren aus den an Grenzkosten orientierten Strompreisen. Das Anreizproblem ist allerdings bei moderaten CO2-Preisen am größten. Es gilt auch für Kraftwerke mit CO2-Abscheidung: Obwohl die erwarteten Vermeidungskosten für CCS-Kraftwerke gegenüber konventionellen Kohlekraftwerken im Jahr 2025 auf 25 €/t CO2 (Braunkohle) bzw. 38,5 €/t CO2 (Steinkohle) geschätzt werden, wird ihr Bau erst ab CO2-Preisen von 50 bzw. 77 €/t CO2 rentabel. Ob und welche Kraftwerksinvestitionen sich langfristig rechnen, wird letztlich aber politisch entschieden und ist selbst unter stark idealisierten Bedingungen kaum vorhersagbar.
The Sun is a star, which due to its proximity has a tremendous influence on Earth. Since its very first days mankind tried to "understand the Sun", and especially in the 20th century science has uncovered many of the Sun's secrets by using high resolution observations and describing the Sun by means of models. As an active star the Sun's activity, as expressed in its magnetic cycle, is closely related to the sunspot numbers. Flares play a special role, because they release large energies on very short time scales. They are correlated with enhanced electromagnetic emissions all over the spectrum. Furthermore, flares are sources of energetic particles. Hard X-ray observations (e.g., by NASA's RHESSI spacecraft) reveal that a large fraction of the energy released during a flare is transferred into the kinetic energy of electrons. However the mechanism that accelerates a large number of electrons to high energies (beyond 20 keV) within fractions of a second is not understood yet. The thesis at hand presents a model for the generation of energetic electrons during flares that explains the electron acceleration based on real parameters obtained by real ground and space based observations. According to this model photospheric plasma flows build up electric potentials in the active regions in the photosphere. Usually these electric potentials are associated with electric currents closed within the photosphere. However as a result of magnetic reconnection, a magnetic connection between the regions of different magnetic polarity on the photosphere can establish through the corona. Due to the significantly higher electric conductivity in the corona, the photospheric electric power supply can be closed via the corona. Subsequently a high electric current is formed, which leads to the generation of hard X-ray radiation in the dense chromosphere. The previously described idea is modelled and investigated by means of electric circuits. For this the microscopic plasma parameters, the magnetic field geometry and hard X-ray observations are used to obtain parameters for modelling macroscopic electric components, such as electric resistors, which are connected with each other. This model demonstrates that such a coronal electric current is correlated with large scale electric fields, which can accelerate the electrons quickly up to relativistic energies. The results of these calculations are encouraging. The electron fluxes predicted by the model are in agreement with the electron fluxes deduced from the measured photon fluxes. Additionally the model developed in this thesis proposes a new way to understand the observed double footpoint hard X-ray sources.
Literarische Grammatik
(2023)
Dieser Band versammelt neun Beiträge mit dem Ziel, Sprach- und Literaturwissenschaft aufeinander zu beziehen: Literatur grammatisch zu betrachten und Grammatik für Literatur (neu) zu denken. Jeder Beitrag nimmt mindestens einen grammatischen und einen literarischen Gegenstand zum Ausgangspunkt. Dabei ist die Bandbreite groß; sie reicht von Bodo Kirchhoffs Roman ‚Dämmer und Aufruhr‘ über die Kurzgeschichte ‚Das Brot‘ von Wolfgang Borchert bis hin zu Marion Poschmanns Gedichtzyklus ‚Kindergarten Lichtenberg‘ und deckt unterschiedlichste sprachliche Bereiche wie Tempus, semantische Rollen, Interpunktionszeichen oder Metaphern ab.
Ist es in der Schule geradezu erwünscht, Grammatik und Literatur integrativ zu unterrichten, verfolgen sie als universitäre Disziplinen oft ganz unterschiedliche Fragestellungen an verschiedenen Sprachwerken. Vor diesem Hintergrund ist dieser Band ein interdisziplinärer Versuch, Anregungen und neue Perspektiven für schulische wie universitäre Bildungskontexte zu geben.
Migration and development in Senegal : a system dynamics analysis of the feedback relationships
(2011)
This thesis investigates the reciprocal relationship between migration and development in Senegal. Therewith, it contributes to the debate as to whether migration in developing countries enhances or rather impedes the development process. Even though extensive and controversial discussions can be found in the scientific literature regarding the impact of migration on development, research has scarcely examined the feedback relationships between migration and development. Science however agrees with both the fact that migration affects development as well as that the level of development in a country determines migration behaviour. Thus, both variables are neither dependent nor independent, but endogenous variables influencing each other and producing behavioural pattern that cannot be investigated using a static and unidirectional approach. On account of this, the thesis studies the feedback mechanisms existing between migration and development and the behavioural pattern generated by the high interdependence in order to be able to draw conclusions concerning the impact of changes in migration behaviour on the development process. To explore these research questions, the study applies the computer simulation method ‘System Dynamics’ and amplifies the simulation model for national development planning called ‘Threshold 21’ (T21), representing development processes endogenously and integrating economic, social and environmental aspects, using a structure that portrays the reasons and consequences of migration. The model has been customised to Senegal, being an appropriate representative of the theoretical interesting universe of cases. The comparison of the model generated scenarios - in which the intensity of emigration, the loss and gain of education, the remittances or the level of dependence changes - facilitates the analysis. The present study produces two important results. The first outcome is the development of an integrative framework representing migration and development in an endogenous way and incorporating several aspects of different theories. This model can be used as a starting point for further discussions and improvements and it is a fairly relevant and useful result against the background that migration is not integrated into most of the development planning tools despite its significant impact. The second outcome is the gained insights concerning the feedback relations between migration and development and the impact of changes in migration on development. To give two examples: It could be found that migration impacts development positively, indicated by HDI, but that the dominant behaviour of migration and development is a counteracting behaviour. That means that an increase in emigration leads to an improvement in development, while this in turn causes a decline in emigration, counterbalancing the initial increase. Another insight concerns the discovery that migration causes a decline in education in the short term, but leads to an increase in the long term, after approximately 25 years - a typical worse-before-better behaviour. From these and further observations, important policy implications can be derived for the sending and receiving countries. Hence, by overcoming the unidirectional perspective, this study contributes to an improved understanding of the highly complex relationship between migration and development and their feedback relations.
The increasing development of antibiotic resistance in bacteria has been a major problem for years, both in human and veterinary medicine. Prophylactic measures, such as the use of vaccines, are of great importance in reducing the use of antibiotics in livestock. These vaccines are mainly produced based on formaldehyde inactivation. However, the latter damages the recognition elements of the bacterial proteins and thus could reduce the immune response in the animal. An alternative inactivation method developed in this work is based on gentle photodynamic inactivation using carbon nanodots (CNDs) at excitation wavelengths λex > 290 nm. The photodynamic inactivation was characterized on the nonvirulent laboratory strain Escherichia coli K12 using synthesized CNDs. For a gentle inactivation, the CNDs must be absorbed into the cytoplasm of the E. coli cell. Thus, the inactivation through photoinduced formation of reactive oxygen species only takes place inside the bacterium, which means that the outer membrane is neither damaged nor altered. The loading of the CNDs into E. coli was examined using fluorescence microscopy. Complete loading of the bacterial cells could be achieved in less than 10 min. These studies revealed a reversible uptake process allowing the recovery and reuse of the CNDs after irradiation and before the administration of the vaccine. The success of photodynamic inactivation was verified by viability assays on agar. In a homemade flow photoreactor, the fastest successful irradiation of the bacteria could be carried out in 34 s. Therefore, the photodynamic inactivation based on CNDs is very effective. The membrane integrity of the bacteria after irradiation was verified by slide agglutination and atomic force microscopy. The method developed for the laboratory strain E. coli K12 could then be successfully applied to the important avian pathogens Bordetella avium and Ornithobacterium rhinotracheale to aid the development of novel vaccines.
Die Elektrosprayionisation (ESI) ist eine der weitverbreitetsten Ionisationstechniken für flüssige Pro-ben in der Massen- und Ionenmobilitäts(IM)-Spektrometrie. Aufgrund ihrer schonenden Ionisierung wird ESI vorwiegend für empfindliche, komplexe Moleküle in der Biologie und Medizin eingesetzt. Überdies ist sie allerdings für ein sehr breites Spektrum an Substanzklassen anwendbar. Die IM-Spektrometrie wurde ursprünglich zur Detektion gasförmiger Proben entwickelt, die hauptsächlich durch radioaktive Quellen ionisiert werden. Sie ist die einzige analytische Methode, bei der Isomere in Echtzeit getrennt und über ihre charakteristische IM direkt identifiziert werden können. ESI wurde in den 90ger Jahren durch die Hill Gruppe in die IM-Spektrometrie eingeführt. Die Kombination wird bisher jedoch nur von wenigen Gruppen verwendet und hat deshalb noch ein hohes Entwick-lungspotential. Ein vielversprechendes Anwendungsfeld ist der Einsatz in der Hochleistungs-flüssigkeitschromatographie (HPLC) zur mehrdimensionalen Trennung. Heutzutage ist die HPLC die Standardmethode zur Trennung komplexer Proben in der Routineanalytik. HPLC-Trennungsgänge sind jedoch häufig langwierig und der Einsatz verschiedener Laufmittel, hoher Flussraten, von Puffern, sowie Laufmittelgradienten stellt hohe Anforderungen an die Detektoren. Die ESI-IM-Spektrometrie wurde in einigen Studien bereits als HPLC-Detektor eingesetzt, war dort bisher jedoch auf Flussratensplitting oder geringe Flussraten des Laufmittels beschränkt.
In dieser kumulativen Doktorarbeit konnte daher erstmals ein ESI IM-Spektrometer als HPLC-Detektor für den Flussratenbereich von 200-1500 μl/min entwickelt werden. Anhand von fünf Publi-kationen wurden (1) über eine umfassende Charakterisierung die Eignung des Spektrometers als HPLC-Detektor festgestellt, (2) ausgewählte komplexe Trenngänge präsentiert und (3) die Anwen-dung zum Reaktionsmonitoring und (4, 5) mögliche Weiterentwicklungen gezeigt.
Erfolgreich konnten mit dem selbst-entwickelten ESI IM-Spektrometer typische HPLC-Bedingungen wie Wassergehalte im Laufmittel von bis zu 90%, Pufferkonzentrationen von bis zu 10 mM, sowie Nachweisgrenzen von bis zu 50 nM erreicht werden. Weiterhin wurde anhand der komplexen Trennungsgänge (24 Pestizide/18 Aminosäuren) gezeigt, dass die HPLC und die IM-Spektrometrie eine hohe Orthogonalität besitzen. Eine effektive Peakkapazität von 240 wurde so realisiert. Auf der HPLC-Säule koeluierende Substanzen konnten über die Driftzeit getrennt und über ihre IM identifi-ziert werden, sodass die Gesamttrennzeiten erheblich minimiert werden konnten. Die Anwend-barkeit des ESI IM-Spektrometers zur Überwachung chemischer Synthesen wurde anhand einer dreistufigen Reaktion demonstriert. Es konnten die wichtigsten Edukte, Zwischenprodukte und Produkte aller Stufen identifiziert werden. Eine quantitative Auswertung war sowohl über eine kurze HPLC-Vortrennung als auch durch die Entwicklung eines eigenen Kalibrierverfahrens, welches die Ladungskonkurrenz bei ESI berücksichtigt, ohne HPLC möglich. Im zweiten Teil der Arbeit werden zwei Weiterentwicklungen des Spektrometers präsentiert. Eine Möglichkeit ist die Reduzierung des Drucks in den intermediären Bereich (300 - 1000 mbar) mit dem Ziel der Verringerung der benötigten Spannungen. Mithilfe von Streulichtbildern und Strom-Spannungs-Kurven wurden für geringe Drücke eine verminderte Freisetzung der Analyt-Ionen aus den Tropfen festgestellt. Die Verluste konnten jedoch über höhere elektrische Feldstärken ausgeglichen werden, sodass gleiche Nachweisgrenzen bei 500 mbar und bei 1 bar erreicht wurden. Die zweite Weiterentwicklung ist ein neuartiges Ionentors mit Pulsschaltung, welches eine Verdopplung der Auflösung auf bis zu R > 100 bei gleicher Sensitivität ermöglichte. Eine denkbare Anwendung im Bereich der Peptidanalytik wurde mit beachtlichen Auflösungen der Peptide von R = 90 gezeigt.
The occurrence of earthquakes is characterized by a high degree of spatiotemporal complexity. Although numerous patterns, e.g. fore- and aftershock sequences, are well-known, the underlying mechanisms are not observable and thus not understood. Because the recurrence times of large earthquakes are usually decades or centuries, the number of such events in corresponding data sets is too small to draw conclusions with reasonable statistical significance. Therefore, the present study combines both, numerical modeling and analysis of real data in order to unveil the relationships between physical mechanisms and observational quantities. The key hypothesis is the validity of the so-called "critical point concept" for earthquakes, which assumes large earthquakes to occur as phase transitions in a spatially extended many-particle system, similar to percolation models. New concepts are developed to detect critical states in simulated and in natural data sets. The results indicate that important features of seismicity like the frequency-size distribution and the temporal clustering of earthquakes depend on frictional and structural fault parameters. In particular, the degree of quenched spatial disorder (the "roughness") of a fault zone determines whether large earthquakes occur quasiperiodically or more clustered. This illustrates the power of numerical models in order to identify regions in parameter space, which are relevant for natural seismicity. The critical point concept is verified for both, synthetic and natural seismicity, in terms of a critical state which precedes a large earthquake: a gradual roughening of the (unobservable) stress field leads to a scale-free (observable) frequency-size distribution. Furthermore, the growth of the spatial correlation length and the acceleration of the seismic energy release prior to large events is found. The predictive power of these precursors is, however, limited. Instead of forecasting time, location, and magnitude of individual events, a contribution to a broad multiparameter approach is encouraging.