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Sequential data assimilation of the stochastic SEIR epidemic model for regional COVID-19 dynamics
(2021)
Newly emerging pandemics like COVID-19 call for predictive models to implement precisely tuned responses to limit their deep impact on society. Standard epidemic models provide a theoretically well-founded dynamical description of disease incidence. For COVID-19 with infectiousness peaking before and at symptom onset, the SEIR model explains the hidden build-up of exposed individuals which creates challenges for containment strategies. However, spatial heterogeneity raises questions about the adequacy of modeling epidemic outbreaks on the level of a whole country. Here, we show that by applying sequential data assimilation to the stochastic SEIR epidemic model, we can capture the dynamic behavior of outbreaks on a regional level. Regional modeling, with relatively low numbers of infected and demographic noise, accounts for both spatial heterogeneity and stochasticity. Based on adapted models, short-term predictions can be achieved. Thus, with the help of these sequential data assimilation methods, more realistic epidemic models are within reach.
Skilled reading requires information processing of the fixated and the not-yet-fixated words to generate precise control of gaze. Over the last 30 years, experimental research provided evidence that word processing is distributed across the perceptual span, which permits recognition of the fixated (foveal) word as well as preview of parafoveal words to the right of fixation. However, theoretical models have been unable to differentiate the specific influences of foveal and parafoveal information on saccade control. Here we show how parafoveal word difficulty modulates spatial and temporal control of gaze in a computational model to reproduce experimental results. In a fully Bayesian framework, we estimated model parameters for different models of parafoveal processing and carried out large-scale predictive simulations and model comparisons for a gaze-contingent reading experiment. We conclude that mathematical modeling of data from gaze-contingent experiments permits the precise identification of pathways from parafoveal information processing to gaze control, uncovering potential mechanisms underlying the parafoveal contribution to eye-movement control.
Skilled reading requires information processing of the fixated and the not-yet-fixated words to generate precise control of gaze. Over the last 30 years, experimental research provided evidence that word processing is distributed across the perceptual span, which permits recognition of the fixated (foveal) word as well as preview of parafoveal words to the right of fixation. However, theoretical models have been unable to differentiate the specific influences of foveal and parafoveal information on saccade control. Here we show how parafoveal word difficulty modulates spatial and temporal control of gaze in a computational model to reproduce experimental results. In a fully Bayesian framework, we estimated model parameters for different models of parafoveal processing and carried out large-scale predictive simulations and model comparisons for a gaze-contingent reading experiment. We conclude that mathematical modeling of data from gaze-contingent experiments permits the precise identification of pathways from parafoveal information processing to gaze control, uncovering potential mechanisms underlying the parafoveal contribution to eye-movement control.
In eye-movement control during reading, advanced process-oriented models have been developed to reproduce behavioral data. So far, model complexity and large numbers of model parameters prevented rigorous statistical inference and modeling of interindividual differences. Here we propose a Bayesian approach to both problems for one representative computational model of sentence reading (SWIFT; Engbert et al., Psychological Review, 112, 2005, pp. 777-813). We used experimental data from 36 subjects who read the text in a normal and one of four manipulated text layouts (e.g., mirrored and scrambled letters). The SWIFT model was fitted to subjects and experimental conditions individually to investigate between- subject variability. Based on posterior distributions of model parameters, fixation probabilities and durations are reliably recovered from simulated data and reproduced for withheld empirical data, at both the experimental condition and subject levels. A subsequent statistical analysis of model parameters across reading conditions generates model-driven explanations for observable effects between conditions.