Refine
Year of publication
Document Type
- Habilitation Thesis (107) (remove)
Keywords
- Biophysik (3)
- biophysics (3)
- synchronization (3)
- Datenanalyse (2)
- Oberfläche (2)
- Resonanzenergietransfer (2)
- Selbstorganisation (2)
- Stochastische Prozesse (2)
- Synchronisation (2)
- Zelladhäsion (2)
Institute
- Institut für Physik und Astronomie (25)
- Institut für Biochemie und Biologie (17)
- Institut für Chemie (16)
- Institut für Geowissenschaften (12)
- Institut für Umweltwissenschaften und Geographie (7)
- Department Sport- und Gesundheitswissenschaften (5)
- Institut für Ernährungswissenschaft (5)
- Institut für Romanistik (4)
- Department Psychologie (2)
- Extern (2)
The occurrence of earthquakes is characterized by a high degree of spatiotemporal complexity. Although numerous patterns, e.g. fore- and aftershock sequences, are well-known, the underlying mechanisms are not observable and thus not understood. Because the recurrence times of large earthquakes are usually decades or centuries, the number of such events in corresponding data sets is too small to draw conclusions with reasonable statistical significance. Therefore, the present study combines both, numerical modeling and analysis of real data in order to unveil the relationships between physical mechanisms and observational quantities. The key hypothesis is the validity of the so-called "critical point concept" for earthquakes, which assumes large earthquakes to occur as phase transitions in a spatially extended many-particle system, similar to percolation models. New concepts are developed to detect critical states in simulated and in natural data sets. The results indicate that important features of seismicity like the frequency-size distribution and the temporal clustering of earthquakes depend on frictional and structural fault parameters. In particular, the degree of quenched spatial disorder (the "roughness") of a fault zone determines whether large earthquakes occur quasiperiodically or more clustered. This illustrates the power of numerical models in order to identify regions in parameter space, which are relevant for natural seismicity. The critical point concept is verified for both, synthetic and natural seismicity, in terms of a critical state which precedes a large earthquake: a gradual roughening of the (unobservable) stress field leads to a scale-free (observable) frequency-size distribution. Furthermore, the growth of the spatial correlation length and the acceleration of the seismic energy release prior to large events is found. The predictive power of these precursors is, however, limited. Instead of forecasting time, location, and magnitude of individual events, a contribution to a broad multiparameter approach is encouraging.
One of the classical ways to describe the dynamics of nonlinear systems is to analyze theur Fourier spectra. For periodic and quasiperiodic processes the Fourier spectrum consists purely of discrete delta-functions. On the contrary, the spectrum of a chaotic motion is marked by the presence of the continuous component. In this work, we describe the peculiar, neither regular nor completely chaotic state with so called singular-continuous power spectrum. Our investigations concern various cases from most different fields, where one meets the singular continuous (fractal) spectra. The examples include both the physical processes which can be reduced to iterated discrete mappings or even symbolic sequences, and the processes whose description is based on the ordinary or partial differential equations.
Our every-day experience is connected with different acoustical noise or music. Usually noise plays the role of nuisance in any communication and destroys any order in a system. Similar optical effects are known: strong snowing or raining decreases quality of a vision. In contrast to these situations noisy stimuli can also play a positive constructive role, e.g. a driver can be more concentrated in a presence of quiet music. Transmission processes in neural systems are of especial interest from this point of view: excitation or information will be transmitted only in the case if a signal overcomes a threshold. Dr. Alexei Zaikin from the Potsdam University studies noise-induced phenomena in nonlinear systems from a theoretical point of view. Especially he is interested in the processes, in which noise influences the behaviour of a system twice: if the intensity of noise is over a threshold, it induces some regular structure that will be synchronized with the behaviour of neighbour elements. To obtain such a system with a threshold one needs one more noise source. Dr. Zaikin has analyzed further examples of such doubly stochastic effects and developed a concept of these new phenomena. These theoretical findings are important, because such processes can play a crucial role in neurophysics, technical communication devices and living sciences.
Poly(Ionic Liquid)s
(2015)
Proteins are chain molecules built from amino acids. The precise sequence of the 20 different types of amino acids in a protein chain defines into which structure a protein folds, and the three-dimensional structure in turn specifies the biological function of the protein. The reliable folding of proteins is a prerequisite for their robust function. Misfolding can lead to protein aggregates that cause severe diseases, such as Alzheimer's, Parkinson's, or the variant Creutzfeldt-Jakob disease. Small single-domain proteins often fold without experimentally detectable metastable intermediate states. The folding dynamics of these proteins is thought to be governed by a single transition-state barrier between the unfolded and the folded state. The transition state is highly instable and cannot be observed directly. However, mutations in which a single amino acid of the protein is substituted by another one can provide indirect access. The mutations slightly change the transition-state barrier and, thus, the folding and unfolding times of the protein. The central question is how to reconstruct the transition state from the observed changes in folding times. In this habilitation thesis, a novel method to extract structural information on transition states from mutational data is presented. The method is based on (i) the cooperativity of structural elements such as alpha-helices and beta-hairpins, and (ii) on splitting up mutation-induced free-energy changes into components for these elements. By fitting few parameters, the method reveals the degree of structure formation of alpha-helices and beta-hairpins in the transition state. In addition, it is shown in this thesis that the folding routes of small single-domain proteins are dominated by loop-closure dependencies between the structural elements.
In der vorliegenden Arbeit werden verschiedene Experimente zur Untersuchung der elektrischen Leitfähigkeit von Sutur- und Kollisionszonen im Zusammenhang diskutiert, um die Möglichkeiten, die die moderne Magnetotellurik (MT) für das Abbilden fossiler tektonischer Systeme bietet, aufzuzeigen. Aus den neuen hochauflösenden Abbildern der elektrischen Leitfähigkeit können potentielle Gemeinsamkeiten verschiedener tektonischer Einheiten abgeleitet werden. Innerhalb der letzten Dekade haben sich durch die Weiterentwicklung der Messgeräte und der Auswerte- und Interpretationsmethoden völlig neue Perspektiven für die geodynamische Tiefensondierung ergeben. Dies wird an meinen Forschungsarbeiten deutlich, die ich im Rahmen von Projekten selbst eingeworben und am Deutschen GeoForschungsZentrum Potsdam durchgeführt habe. In Tabelle A habe ich die in dieser Arbeit berücksichtigten Experimente aufgeführt, die in den letzten Jahren entweder als Array- oder als Profilmessungen durchgeführt wurden. Für derart große Feldexperimente benötigt man ein Team von WissenschaftlerInnen, StudentInnen und technischem Personal. Das bedeutet aber auch, dass von mir betreute StudentInnen und DoktorandInnen Teilaspekte dieser Experimente in Form von Diplom-, Bachelor- und Mastersarbeiten oder Promotionsschriften verarbeitet haben. Bei anschließender Veröffentlichung der Arbeiten habe ich als Co-Autor mitgewirkt. Die beiliegenden Veröffentlichungen enthalten eine Einführung in die Methode der Magnetotellurik und gegebenenfalls die Beschreibung neu entwickelter Methoden. Eine allgemeine Darstellung der theoretischen Grundlagen der Magnetotellurik findet man zum Beispiel in Chave & Jones (2012); Simpson & Bahr (2005); Kaufman & Keller (1981); Nabighian (1987); Weaver (1994). Die Arbeit beinhaltet zudem ein Glossar, in dem einige Begriffe und Abkürzungen erklärt werden. Ich habe mich entschieden, Begriffe, für die es keine adäquate deutsche Übersetzung gibt oder die im Deutschen eine andere oder missverständliche Bedeutung bekommen, auf Englisch in der Arbeit zu belassen. Sie sind durch eine kursive Schreibweise gekennzeichnet.
The Arctic plays a key role in Earth’s climate system as global warming is predicted to be most pronounced at high latitudes and because one third of the global carbon pool is stored in ecosystems of the northern latitudes. In order to improve our understanding of the present and future carbon dynamics in climate sensitive permafrost ecosystems, the present study concentrates on investigations of microbial controls of methane fluxes, on the activity and structure of the involved microbial communities, and on their response to changing environmental conditions. For this purpose an integrated research strategy was applied, which connects trace gas flux measurements to soil ecological characterisation of permafrost habitats and molecular ecological analyses of microbial populations. Furthermore, methanogenic archaea isolated from Siberian permafrost have been used as potential keystone organisms for studying and assessing life under extreme living conditions. Long-term studies on methane fluxes were carried out since 1998. These studies revealed considerable seasonal and spatial variations of methane emissions for the different landscape units ranging from 0 to 362 mg m-2 d-1. For the overall balance of methane emissions from the entire delta, the first land cover classification based on Landsat images was performed and applied for an upscaling of the methane flux data sets. The regionally weighted mean daily methane emissions of the Lena Delta (10 mg m-2 d-1) are only one fifth of the values calculated for other Arctic tundra environments. The calculated annual methane emission of the Lena Delta amounts to about 0.03 Tg. The low methane emission rates obtained in this study are the result of the used remotely sensed high-resolution data basis, which provides a more realistic estimation of the real methane emissions on a regional scale. Soil temperature and near soil surface atmospheric turbulence were identified as the driving parameters of methane emissions. A flux model based on these variables explained variations of the methane budget corresponding to continuous processes of microbial methane production and oxidation, and gas diffusion through soil and plants reasonably well. The results show that the Lena Delta contributes significantly to the global methane balance because of its extensive wetland areas. The microbiological investigations showed that permafrost soils are colonized by high numbers of microorganisms. The total biomass is comparable to temperate soil ecosystems. Activities of methanogens and methanotrophs differed significantly in their rates and distribution patterns along both the vertical profiles and the different investigated soils. The methane production rates varied between 0.3 and 38.9 nmol h-1 g-1, while the methane oxidation ranged from 0.2 to 7.0 nmol h-1 g-1. Phylogenetic analyses of methanogenic communities revealed a distinct diversity of methanogens affiliated to Methanomicrobiaceae, Methanosarcinaceae and Methanosaetaceae, which partly form four specific permafrost clusters. The results demonstrate the close relationship between methane fluxes and the fundamental microbiological processes in permafrost soils. The microorganisms do not only survive in their extreme habitat but also can be metabolic active under in situ conditions. It was shown that a slight increase of the temperature can lead to a substantial increase in methanogenic activity within perennially frozen deposits. In case of degradation, this would lead to an extensive expansion of the methane deposits with their subsequent impacts on total methane budget. Further studies on the stress response of methanogenic archaea, especially Methanosarcina SMA-21, isolated from Siberian permafrost, revealed an unexpected resistance of the microorganisms against unfavourable living conditions. A better adaptation to environmental stress was observed at 4 °C compared to 28 °C. For the first time it could be demonstrated that methanogenic archaea from terrestrial permafrost even survived simulated Martian conditions. The results show that permafrost methanogens are more resistant than methanogens from non-permafrost environments under Mars-like climate conditions. Microorganisms comparable to methanogens from terrestrial permafrost can be seen as one of the most likely candidates for life on Mars due to their physiological potential and metabolic specificity.
By using mouse outcross populations in combination with bioinformatic approaches, it was possible to identify and characterize novel genes regulating body weight, fat mass and β-cell function, which all contribute to the pathogenesis of obesity and T2D. In detail, the presented studies identified 1. Ifi202b/IFI16 as adipogenic gene involved in adipocyte commitment, maintenance of white adipocyte identity, fat cell size and the inflammatory state of adipose tissue. 2. Pla2g4a/PLA2G4A as gene linked to increased body weight and fat mass with a higher expression in adipose tissue of obese mice and pigs as well as in obese human subjects. 3. Ifgga2/IRGM as novel regulator of lipophagy protecting from excess hepatic lipid accumulation. 4. Nidd/DBA as a diabetogenic locus containing Kti12, Osbpl9, Ttc39a and Calr4 with differential expression in pancreatic islets and/or genetic variants. 5. miR-31 to be higher expressed in adipose tissue of obese and diabetic mice and humans targeting PPARy and GLUT4 and thereby involved in adipogenesis and insulin signaling. 6. Gjb4 as novel gene triggering the development of T2D by reducing insulin secretion, inducing apoptosis and inhibiting proliferation. The performed studies confirmed the complexity and strong genetic heritability character of obesity and T2D. A high number of genetic variations, each with a small effect, are collectively influencing the degree and severity of the disease. The use of mouse outcross populations is a valid tool for disease gene identification; however, to facilitate and accelerate the process of gene identification the combination of mouse cross data with advanced sequencing resources and the publicly available data sets are essential. The main goal for future studies should be the translation of these novel molecular discoveries to useful treatment therapies. More recently, several classes of novel unimolecular combination therapeutics have emerged with superior efficacy than currently prescribed options and pose the potential to reverse obesity and T2D (Finan et al., 2015). The glucagon-like peptide-1 (GLP-1)- estrogen conjugate, which targets estrogen into cells expressing GLP-1 receptors, was shown to improve energy, glucose and lipid metabolism as well as to reduce food reward (Finan et al., 2012; Schwenk et al., 2014; Vogel et al., 2016). Another possibility is the development of miRNA-based therapeutics to prevent obesity and T2D, such as miRNA mimetics, anti-miRNA oligonucleotides and exosomes loaded with miRNAs (Ji and Guo, 2019; Gottmann et al., 2020). As already described, genome-wide association studies for polygenic obesity and T2D traits in humans have also led to the identification of numerous gene variants with modest effect, most of them having an unknown function (Yazdi et al., 2015). These discoveries resulted in novel animal models and have illuminated new biologic pathways. Therefore, the integration of mouse-human genetic approaches and the utilization of the synergistic effects have the potential to lead to the identification of more genes responsible for common Mendelian forms of obesity and T2D, as well as gene × gene and gene × environment interactions (Yazdi et al., 2015; Ingelsson and McCarthy, 2018). This combination may help to unravel the missing heritability of obesity and T2D, to identify novel drug targets and to design more efficient and personalized obesity prevention and management programs.
The Sun is surrounded by a 10^6 K hot atmosphere, the corona. The corona and the solar wind are fully ionized, and therefore in the plasma state. Magnetic fields play an important role in a plasma, since they bind electrically charged particles to their field lines. EUV spectroscopes, like the SUMER instrument on-board the SOHO spacecraft, reveal a preferred heating of coronal ions and strong temperature anisotropies. Velocity distributions of electrons can be measured directly in the solar wind, e.g. with the 3DPlasma instrument on-board the WIND satellite. They show a thermal core, an anisotropic suprathermal halo, and an anti-solar, magnetic-field-aligned, beam or "strahl". For an understanding of the physical processes in the corona, an adequate description of the plasma is needed. Magnetohydrodynamics (MHD) treats the plasma simply as an electrically conductive fluid. Multi-fluid models consider e.g. protons and electrons as separate fluids. They enable a description of many macroscopic plasma processes. However, fluid models are based on the assumption of a plasma near thermodynamic equilibrium. But the solar corona is far away from this. Furthermore, fluid models cannot describe processes like the interaction with electromagnetic waves on a microscopic scale. Kinetic models, which are based on particle velocity distributions, do not show these limitations, and are therefore well-suited for an explanation of the observations listed above. For the simplest kinetic models, the mirror force in the interplanetary magnetic field focuses solar wind electrons into an extremely narrow beam, which is contradicted by observations. Therefore, a scattering mechanism must exist that counteracts the mirror force. In this thesis, a kinetic model for electrons in the solar corona and wind is presented that provides electron scattering by resonant interaction with whistler waves. The kinetic model reproduces the observed components of solar wind electron distributions, i.e. core, halo, and a "strahl" with finite width. But the model is not only applicable on the quiet Sun. The propagation of energetic electrons from a solar flare is studied, and it is found that scattering in the direction of propagation and energy diffusion influence the arrival times of flare electrons at Earth approximately to the same degree. In the corona, the interaction of electrons with whistler waves does not only lead to scattering, but also to the formation of a suprathermal halo, as it is observed in interplanetary space. This effect is studied both for the solar wind as well as the closed volume of a coronal magnetic loop. The result is of fundamental importance for solar-stellar relations. The quiet solar corona always produces suprathermal electrons. This process is closely related to coronal heating, and can therefore be expected in any hot stellar corona. In the second part of this thesis it is detailed how to calculate growth or damping rates of plasma waves from electron velocity distributions. The emission and propagation of electron cyclotron waves in the quiet solar corona, and that of whistler waves during solar flares, is studied. The latter can be observed as so-called fiber bursts in dynamic radio spectra, and the results are in good agreement with observed bursts.