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GEOPHILUS ELECTRICUS (nickname GEOPHILUS) is a novel system for mapping the complex electrical bulk resistivity of soils. Rolling electrodes simultaneously measure amplitude and phase data at frequencies ranging from 1 mHz to 1 kHz. The sensor's design and technical specifications allow for measuring these parameters at five depths of up to ca. 1.5 m. Data inversion techniques can be employed to determine resistivity models instead of apparent values and to image soil layers and their geometry with depth. When used in combination with a global positioning system (GPS) and a suitable cross-country vehicle, it is possible to map about 100 ha/day (assuming 1 data point is recorded per second and the line spacing is 18 m). The applicability of the GEOPHILUS system has been demonstrated on several sites, where soils show variations in texture, stratification, and thus electrical characteristics. The data quality has been studied by comparison with 'static' electrodes, by repeated measurements, and by comparison with other mobile conductivity mapping devices (VERIS3100 and EM38). The high quality of the conductivity data produced by the GEOPHILUS system is evident and demonstrated by the overall consistency of the individual maps, and in the clear stratification also confirmed by independent data.
The GEOPHILUS system measures complex values of electrical resistivity in terms of amplitude and phase. Whereas electrical conductivity data (amplitude) are well established in soil science, the interpretation of phase data is a topic of current research. Whether phase data are able to provide additional information depends on the site-specific settings. Here, we present examples, where phase data provide complementary information on man-made structures such as metal pipes and soil compaction.
Background: DNA fragments carrying internal recognition sites for the restriction endonucleases intended for cloning into a target plasmid pose a challenge for conventional cloning.
Results: A method for directional insertion of DNA fragments into plasmid vectors has been developed. The target sequence is amplified from a template DNA sample by PCR using two oligonucleotides each containing a single deoxyinosine base at the third position from the 5' end. Treatment of such PCR products with endonuclease V generates 3' protruding ends suitable for ligation with vector fragments created by conventional restriction endonuclease reactions.
Conclusions: The developed approach generates terminal cohesive ends without the use of Type II restriction endonucleases, and is thus independent from the DNA sequence. Due to PCR amplification, minimal amounts of template DNA are required. Using the robust Taq enzyme or a proofreading Pfu DNA polymerase mutant, the method is applicable to a broad range of insert sequences. Appropriate primer design enables direct incorporation of terminal DNA sequence modifications such as tag addition, insertions, deletions and mutations into the cloning strategy. Further, the restriction sites of the target plasmid can be either retained or removed.
Background: The linear noise approximation (LNA) is commonly used to predict how noise is regulated and exploited at the cellular level. These predictions are exact for reaction networks composed exclusively of first order reactions or for networks involving bimolecular reactions and large numbers of molecules. It is however well known that gene regulation involves bimolecular interactions with molecule numbers as small as a single copy of a particular gene. It is therefore questionable how reliable are the LNA predictions for these systems.
Results: We implement in the software package intrinsic Noise Analyzer (iNA), a system size expansion based method which calculates the mean concentrations and the variances of the fluctuations to an order of accuracy higher than the LNA. We then use iNA to explore the parametric dependence of the Fano factors and of the coefficients of variation of the mRNA and protein fluctuations in models of genetic networks involving nonlinear protein degradation, post-transcriptional, post-translational and negative feedback regulation. We find that the LNA can significantly underestimate the amplitude and period of noise-induced oscillations in genetic oscillators. We also identify cases where the LNA predicts that noise levels can be optimized by tuning a bimolecular rate constant whereas our method shows that no such regulation is possible. All our results are confirmed by stochastic simulations.
Conclusion: The software iNA allows the investigation of parameter regimes where the LNA fares well and where it does not. We have shown that the parametric dependence of the coefficients of variation and Fano factors for common gene regulatory networks is better described by including terms of higher order than LNA in the system size expansion. This analysis is considerably faster than stochastic simulations due to the extensive ensemble averaging needed to obtain statistically meaningful results. Hence iNA is well suited for performing computationally efficient and quantitative studies of intrinsic noise in gene regulatory networks.
Small and medium-sized enterprises (SME) contribute to innovation and economic growth, despite their resource shortages and lack of professional intellectual property (IP) management practices. Drawing on social practice theory and combining insights from recent scholarship on IP strategies and its management, this paper examines the cases of three pharmaceutical SME providing insights into how they appropriate returns on research and development (R&D) investments. It discusses their IP strategies and management practices, examining how the IP management practices are embedded in the firm's organisational structure. Moreover, this paper develops recommendations for SME regarding the professionalisation of their IP management practices.
In this paper, we determine necessary and sufficient conditions for Bruck-Reilly and generalized Bruck-Reilly ∗-extensions of arbitrary monoids to be regular, coregular and strongly π-inverse. These semigroup classes have applications in various field of mathematics, such as matrix theory, discrete mathematics and p-adic analysis (especially in operator theory). In addition, while regularity and coregularity have so many applications in the meaning of boundaries (again in operator theory), inverse monoids and Bruck-Reilly extensions contain a mixture fixed-point results of algebra, topology and geometry within the purposes of this journal.
Three eye movement experiments investigated the interaction between contextual and lexical focus cues during reading. Context was used to focus on either the indirect or direct object of a double object construction, which was followed by a remnant continuation that formed either a congruous or incongruous contrast with the contextually focused object. Experiment 1 demonstrated that remnants were more difficult to process when incongruous with the contextually focused constituent, indicating that context was effective in specifying focus. Experiments 2 and 3 investigated the interaction between context and lexical focus arising from the particle only which specifies focus on the subsequent adjacent element. When only preceded both objects (Experiment 2), the conflict between lexical and contextual focus cues disrupted processing of the remnant element and was resolved in favour of the contextually focused element. However, when only was placed between both objects (Experiment 3), cue-conflict disrupted processing earlier in the sentence but did not appear to be fully resolved during on-line sentence processing. These findings reveal that the interplay between contextual and lexical cues to focus is important for establishing focus structure during on-line sentence processing.
Local adaptation to different pollinators is considered one of the possible initial stages of ecological speciation as reproductive isolation is a by-product of the divergence in pollination systems. However, pollinator-mediated divergent selection will not necessarily result in complete reproductive isolation, because incipient speciation is often overcome by gene flow. We investigated the potential of pollinator shift in the sexually deceptive orchids Ophrys sphegodes and Ophrys exaltata and compared the levels of floral isolation vs. genetic distance among populations with contrasting predominant pollinators. We analysed floral hydrocarbons as a proxy for floral divergence between populations. Floral adoption of pollinators and their fidelity was tested using pollinator choice experiments. Interpopulation gene flow and population differentiation levels were estimated using AFLP markers. The Tyrrhenian O.sphegodes population preferentially attracted the pollinator bee Andrena bimaculata, whereas the Adriatic O.sphegodes population exclusively attracted A.nigroaenea. Significant differences in scent component proportions were identified in O.sphegodes populations that attracted different preferred pollinators. High interpopulation gene flow was detected, but populations were genetically structured at species level. The high interpopulation gene flow levels independent of preferred pollinators suggest that local adaptation to different pollinators has not (yet) generated detectable genome-wide separation. Alternatively, despite extensive gene flow, few genes underlying floral isolation remain differentiated as a consequence of divergent selection. Different pollination ecotypes in O.sphegodes might represent a local selective response imposed by temporal variation in a geographical mosaic of pollinators as a consequence of the frequent disturbance regimes typical of Ophrys habitats.
Finding evidence for ultrahigh-pressure (UHP) metamorphism in crustal rocks is far from straightforward. The index minerals coesite and diamond are incredibly inconspicuous and are therefore difficult to use as UHP prospecting tools. Consequently, petrographers rely on recognizing subtle breakdown microstructures that result from pressure release during the return to the surface of the once deeply buried rock. Similarly, many other UHP minerals are first suspected on the basis of typical reaction or exsolution microstructures. Thus, the painstaking use of microscopic techniques has been fundamental to the tremendous advances in characterizing, quantifying, and understanding macroscopic-scale, deep continental subduction, rapid exhumation, and mountain-building processes.