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- Hasso-Plattner-Institut für Digital Engineering GmbH (1)
- Institut für Umweltwissenschaften und Geographie (1)
Arnison, Paul G. ; Bibb, Mervyn J. ; Bierbaum, Gabriele ; Bowers, Albert A. ; Bugni, Tim S. ; Bulaj, Grzegorz ; Camarero, Julio A. ; Campopiano, Dominic J. ; Challis, Gregory L. ; Clardy, Jon ; Cotter, Paul D. ; Craik, David J. ; Dawson, Michael ; Dittmann-Thünemann, Elke ; Donadio, Stefano ; Dorrestein, Pieter C. ; Entian, Karl-Dieter ; Fischbach, Michael A. ; Garavelli, John S. ; Goeransson, Ulf ; Gruber, Christian W. ; Haft, Daniel H. ; Hemscheidt, Thomas K. ; Hertweck, Christian ; Hill, Colin ; Horswill, Alexander R. ; Jaspars, Marcel ; Kelly, Wendy L. ; Klinman, Judith P. ; Kuipers, Oscar P. ; Link, A. James ; Liu, Wen ; Marahiel, Mohamed A. ; Mitchell, Douglas A. ; Moll, Gert N. ; Moore, Bradley S. ; Mueller, Rolf ; Nair, Satish K. ; Nes, Ingolf F. ; Norris, Gillian E. ; Olivera, Baldomero M. ; Onaka, Hiroyasu ; Patchett, Mark L. ; Piel, Jörn ; Reaney, Martin J. T. ; Rebuffat, Sylvie ; Ross, R. Paul ; Sahl, Hans-Georg ; Schmidt, Eric W. ; Selsted, Michael E. ; Severinov, Konstantin ; Shen, Ben ; Sivonen, Kaarina ; Smith, Leif ; Stein, Torsten ; Suessmuth, Roderich D. ; Tagg, John R. ; Tang, Gong-Li ; Truman, Andrew W. ; Vederas, John C. ; Walsh, Christopher T. ; Walton, Jonathan D. ; Wenzel, Silke C. ; Willey, Joanne M. ; van der Donk, Wilfred A.
This review presents recommended nomenclature for the biosynthesis of ribosomally synthesized and post-translationally modified peptides (RiPPs), a rapidly growing class of natural products. The current knowledge regarding the biosynthesis of the >20 distinct compound classes is also reviewed, and commonalities are discussed.
Townsley, Leisa K. ; Broos, Patrick S. ; Corcoran, Michael F. ; Feigelson, Eric D. ; Gagne, Marc ; Montmerle, Thierry ; Oey, M. S. ; Smith, Nathan ; Garmire, Gordon P. ; Getman, Konstantin V. ; Povich, Matthew S. ; Evans, Nancy Remage ; Naze, Yael ; Parkin, E. R. ; Preibisch, Thomas ; Wang, Junfeng ; Wou, Scott J. ; Chu, You-Hua ; Cohen, David H. ; Gruendl, Robert A. ; Hamaguchi, Kenji ; King, Robert R. ; Mac Low, Mordecai-Mark ; McCaughrean, Mark J. ; Moffat, Anthony F. J. ; Oskinova, Lidia M. ; Pittard, Julian M. ; Stassun, Keivan G. ; Ud-Doula, Asif ; Walborn, Nolan R. ; Waldron, Wayne L. ; Churchwell, Ed ; Nictiols, J. S. ; Owocki, Stanley P. ; Schulz, Norbert S.
The Great Nebula in Carina provides an exceptional view into the violent massive star formation and feedback that typifies giant H II regions and starburst galaxies. We have mapped the Carina star-forming complex in X-rays, using archival Chandra data and a mosaic of 20 new 60 ks pointings using the Chandra X-ray Observatory's Advanced CCD Imaging Spectrometer, as a testbed for understanding recent and ongoing star formation and to probe Carina's regions of bright diffuse X-ray emission. This study has yielded a catalog of properties of > 14,000 X-ray point sources;> 9800 of them have multiwavelength counterparts. Using Chandra's unsurpassed X-ray spatial resolution, we have separated these point sources from the extensive, spatially-complex diffuse emission that pervades the region; X-ray properties of this diffuse emission suggest that it traces feedback from Carina's massive stars. In this introductory paper, we motivate the survey design, describe the Chandra observations, and present some simple results, providing a foundation for the 15 papers that follow in this special issue and that present detailed catalogs, methods, and science results.
A novel common variant in DCST2 is associated with length in early life and height in adulthood
(2015)
van der Valk, Ralf J. P. ; Kreiner-Moller, Eskil ; Kooijman, Marjolein N. ; Guxens, Monica ; Stergiakouli, Evangelia ; Saaf, Annika ; Bradfield, Jonathan P. ; Geller, Frank ; Hayes, M. Geoffrey ; Cousminer, Diana L. ; Koerner, Antje ; Thiering, Elisabeth ; Curtin, John A. ; Myhre, Ronny ; Huikari, Ville ; Joro, Raimo ; Kerkhof, Marjan ; Warrington, Nicole M. ; Pitkanen, Niina ; Ntalla, Ioanna ; Horikoshi, Momoko ; Veijola, Riitta ; Freathy, Rachel M. ; Teo, Yik-Ying ; Barton, Sheila J. ; Evans, David M. ; Kemp, John P. ; St Pourcain, Beate ; Ring, Susan M. ; Smith, George Davey ; Bergstrom, Anna ; Kull, Inger ; Hakonarson, Hakon ; Mentch, Frank D. ; Bisgaard, Hans ; Chawes, Bo Lund Krogsgaard ; Stokholm, Jakob ; Waage, Johannes ; Eriksen, Patrick ; Sevelsted, Astrid ; Melbye, Mads ; van Duijn, Cornelia M. ; Medina-Gomez, Carolina ; Hofman, Albert ; de Jongste, Johan C. ; Taal, H. Rob ; Uitterlinden, Andre G. ; Armstrong, Loren L. ; Eriksson, Johan ; Palotie, Aarno ; Bustamante, Mariona ; Estivill, Xavier ; Gonzalez, Juan R. ; Llop, Sabrina ; Kiess, Wieland ; Mahajan, Anubha ; Flexeder, Claudia ; Tiesler, Carla M. T. ; Murray, Clare S. ; Simpson, Angela ; Magnus, Per ; Sengpiel, Verena ; Hartikainen, Anna-Liisa ; Keinanen-Kiukaanniemi, Sirkka ; Lewin, Alexandra ; Alves, Alexessander Da Silva Couto ; Blakemore, Alexandra I. F. ; Buxton, Jessica L. ; Kaakinen, Marika ; Rodriguez, Alina ; Sebert, Sylvain ; Vaarasmaki, Marja ; Lakka, Timo ; Lindi, Virpi ; Gehring, Ulrike ; Postma, Dirkje S. ; Ang, Wei ; Newnham, John P. ; Lyytikainen, Leo-Pekka ; Pahkala, Katja ; Raitakari, Olli T. ; Panoutsopoulou, Kalliope ; Zeggini, Eleftheria ; Boomsma, Dorret I. ; Groen-Blokhuis, Maria ; Ilonen, Jorma ; Franke, Lude ; Hirschhorn, Joel N. ; Pers, Tune H. ; Liang, Liming ; Huang, Jinyan ; Hocher, Berthold ; Knip, Mikael ; Saw, Seang-Mei ; Holloway, John W. ; Melen, Erik ; Grant, Struan F. A. ; Feenstra, Bjarke ; Lowe, William L. ; Widen, Elisabeth ; Sergeyev, Elena ; Grallert, Harald ; Custovic, Adnan ; Jacobsson, Bo ; Jarvelin, Marjo-Riitta ; Atalay, Mustafa ; Koppelman, Gerard H. ; Pennell, Craig E. ; Niinikoski, Harri ; Dedoussis, George V. ; Mccarthy, Mark I. ; Frayling, Timothy M. ; Sunyer, Jordi ; Timpson, Nicholas J. ; Rivadeneira, Fernando ; Bonnelykke, Klaus ; Jaddoe, Vincent W. V.
Common genetic variants have been identified for adult height, but not much is known about the genetics of skeletal growth in early life. To identify common genetic variants that influence fetal skeletal growth, we meta-analyzed 22 genome-wide association studies (Stage 1; N = 28 459). We identified seven independent top single nucleotide polymorphisms (SNPs) (P < 1 x 10(-6)) for birth length, of which three were novel and four were in or near loci known to be associated with adult height (LCORL, PTCH1, GPR126 and HMGA2). The three novel SNPs were followed-up in nine replication studies (Stage 2; N = 11 995), with rs905938 in DC-STAMP domain containing 2 (DCST2) genome-wide significantly associated with birth length in a joint analysis (Stages 1 + 2; beta = 0.046, SE = 0.008, P = 2.46 x 10(-8), explained variance = 0.05%). Rs905938 was also associated with infant length (N = 28 228; P = 5.54 x 10(-4)) and adult height (N = 127 513; P = 1.45 x 10(-5)). DCST2 is a DC-STAMP-like protein family member and DC-STAMP is an osteoclast cell-fusion regulator. Polygenic scores based on 180 SNPs previously associated with human adult stature explained 0.13% of variance in birth length. The same SNPs explained 2.95% of the variance of infant length. Of the 180 known adult height loci, 11 were genome-wide significantly associated with infant length (SF3B4, LCORL, SPAG17, C6orf173, PTCH1, GDF5, ZNFX1, HHIP, ACAN, HLA locus and HMGA2). This study highlights that common variation in DCST2 influences variation in early growth and adult height.
Kikstra, Jarmo S. ; Nicholls, Zebedee R. J. ; Smith, Christopher J. ; Lewis, Jared ; Lamboll, Robin D. ; Byers, Edward ; Sandstad, Marit ; Meinshausen, Malte ; Gidden, Matthew J. ; Rogelj, Joeri ; Kriegler, Elmar ; Peters, Glen P. ; Fuglestvedt, Jan S. ; Skeie, Ragnhild B. ; Samset, Bjørn H. ; Wienpahl, Laura ; van Vuuren, Detlef P. ; van der Wijst, Kaj-Ivar ; Al Khourdajie, Alaa ; Forster, Piers M. ; Reisinger, Andy ; Schaeffer, Roberto ; Riahi, Keywan
While the Intergovernmental Panel on Climate Change (IPCC) physical science reports usually assess a handful of future scenarios, the Working Group III contribution on climate mitigation to the IPCC's Sixth Assessment Report (AR6 WGIII) assesses hundreds to thousands of future emissions scenarios. A key task in WGIII is to assess the global mean temperature outcomes of these scenarios in a consistent manner, given the challenge that the emissions scenarios from different integrated assessment models (IAMs) come with different sectoral and gas-to-gas coverage and cannot all be assessed consistently by complex Earth system models. In this work, we describe the “climate-assessment” workflow and its methods, including infilling of missing emissions and emissions harmonisation as applied to 1202 mitigation scenarios in AR6 WGIII. We evaluate the global mean temperature projections and effective radiative forcing (ERF) characteristics of climate emulators FaIRv1.6.2 and MAGICCv7.5.3 and use the CICERO simple climate model (CICERO-SCM) for sensitivity analysis. We discuss the implied overshoot severity of the mitigation pathways using overshoot degree years and look at emissions and temperature characteristics of scenarios compatible with one possible interpretation of the Paris Agreement. We find that the lowest class of emissions scenarios that limit global warming to “1.5 ∘C (with a probability of greater than 50 %) with no or limited overshoot” includes 97 scenarios for MAGICCv7.5.3 and 203 for FaIRv1.6.2. For the MAGICCv7.5.3 results, “limited overshoot” typically implies exceedance of median temperature projections of up to about 0.1 ∘C for up to a few decades before returning to below 1.5 ∘C by or before the year 2100. For more than half of the scenarios in this category that comply with three criteria for being “Paris-compatible”, including net-zero or net-negative greenhouse gas (GHG) emissions, median temperatures decline by about 0.3–0.4 ∘C after peaking at 1.5–1.6 ∘C in 2035–2055. We compare the methods applied in AR6 with the methods used for SR1.5 and discuss their implications. This article also introduces a “climate-assessment” Python package which allows for fully reproducing the IPCC AR6 WGIII temperature assessment. This work provides a community tool for assessing the temperature outcomes of emissions pathways and provides a basis for further work such as extending the workflow to include downscaling of climate characteristics to a regional level and calculating impacts.
D'Hondt, Steven ; Spivack, Arthur J. ; Pockalny, Robert ; Ferdelman, Timothy G. ; Fischer, Jan P. ; Kallmeyer, Jens ; Abrams, Lewis J. ; Smith, David C. ; Graham, Dennis ; Hasiuk, Franciszek ; Schrum, Heather ; Stancin, Andrea M.
The low-productivity South Pacific Gyre (SPG) is Earth's largest oceanic province. Its sediment accumulates extraordinarily slowly (0.1-1 m per million years). This sediment contains a living community that is characterized by very low biomass and very low metabolic activity. At every depth in cored SPG sediment, mean cell abundances are 3 to 4 orders of magnitude lower than at the same depths in all previously explored subseafloor communities. The net rate of respiration by the subseafloor sedimentary community at each SPG site is 1 to 3 orders of magnitude lower than the rates at previously explored sites. Because of the low respiration rates and the thinness of the sediment, interstitial waters are oxic throughout the sediment column in most of this region. Consequently, the sedimentary community of the SPG is predominantly aerobic, unlike previously explored subseafloor communities. Generation of H-2 by radiolysis of water is a significant electron-donor source for this community. The per-cell respiration rates of this community are about 2 orders of magnitude higher (in oxidation/reduction equivalents) than in previously explored anaerobic subseafloor communities. Respiration rates and cell concentrations in subseafloor sediment throughout almost half of the world ocean may approach those in SPG sediment.
Hot subdwarf B stars are core-helium-burning objects that have undergone envelope stripping, likely by a binary companion. Using high-speed photometry from the Transiting Exoplanet Survey Satellite, we have discovered the hot subdwarf BPM 36430 is a hybrid sdBV(rs) pulsator exhibiting several low-amplitude g-modes and a strong p-mode pulsation. The latter shows a clear, periodic variation in its pulse arrival times. Fits to this phase oscillation imply BPM 36430 orbits a barycenter approximately 10 light-seconds away once every 3.1 days. Using the CHIRON echelle spectrograph on the CTIO 1.5 m telescope, we confirm the reflex motion by detecting a radial-velocity variation with semiamplitude, period, and phase in agreement with the pulse timings. We conclude that a white dwarf companion with minimum mass of approximate to 0.42 M (circle dot) orbits BPM 36430. Our study represents only the second time a companion orbiting a pulsating hot subdwarf or white dwarf has been detected from pulse timings and confirmed with radial velocities.
ISMIP6 Antarctica
(2020)
Seroussi, Helene ; Nowicki, Sophie ; Payne, Antony J. ; Goelzer, Heiko ; Lipscomb, William H. ; Abe-Ouchi, Ayako ; Agosta, Cecile ; Albrecht, Torsten ; Asay-Davis, Xylar ; Barthel, Alice ; Calov, Reinhard ; Cullather, Richard ; Dumas, Christophe ; Galton-Fenzi, Benjamin K. ; Gladstone, Rupert ; Golledge, Nicholas R. ; Gregory, Jonathan M. ; Greve, Ralf ; Hattermann, Tore ; Hoffman, Matthew J. ; Humbert, Angelika ; Huybrechts, Philippe ; Jourdain, Nicolas C. ; Kleiner, Thomas ; Larour, Eric ; Leguy, Gunter R. ; Lowry, Daniel P. ; Little, Chistopher M. ; Morlighem, Mathieu ; Pattyn, Frank ; Pelle, Tyler ; Price, Stephen F. ; Quiquet, Aurelien ; Reese, Ronja ; Schlegel, Nicole-Jeanne ; Shepherd, Andrew ; Simon, Erika ; Smith, Robin S. ; Straneo, Fiammetta ; Sun, Sainan ; Trusel, Luke D. ; Van Breedam, Jonas ; van de Wal, Roderik S. W. ; Winkelmann, Ricarda ; Zhao, Chen ; Zhang, Tong ; Zwinger, Thomas
Ice flow models of the Antarctic ice sheet are commonly used to simulate its future evolution in response to different climate scenarios and assess the mass loss that would contribute to future sea level rise. However, there is currently no consensus on estimates of the future mass balance of the ice sheet, primarily because of differences in the representation of physical processes, forcings employed and initial states of ice sheet models. This study presents results from ice flow model simulations from 13 international groups focusing on the evolution of the Antarctic ice sheet during the period 2015-2100 as part of the Ice Sheet Model Intercomparison for CMIP6 (ISMIP6). They are forced with outputs from a subset of models from the Coupled Model Intercomparison Project Phase 5 (CMIP5), representative of the spread in climate model results. Simulations of the Antarctic ice sheet contribution to sea level rise in response to increased warming during this period varies between 7:8 and 30.0 cm of sea level equivalent (SLE) under Representative Concentration Pathway (RCP) 8.5 scenario forcing. These numbers are relative to a control experiment with constant climate conditions and should therefore be added to the mass loss contribution under climate conditions similar to present-day conditions over the same period. The simulated evolution of the West Antarctic ice sheet varies widely among models, with an overall mass loss, up to 18.0 cm SLE, in response to changes in oceanic conditions. East Antarctica mass change varies between 6 :1 and 8.3 cm SLE in the simulations, with a significant increase in surface mass balance outweighing the increased ice discharge under most RCP 8.5 scenario forcings. The inclusion of ice shelf collapse, here assumed to be caused by large amounts of liquid water ponding at the surface of ice shelves, yields an additional simulated mass loss of 28mm compared to simulations without ice shelf collapse. The largest sources of uncertainty come from the climate forcing, the ocean-induced melt rates, the calibration of these melt rates based on oceanic conditions taken outside of ice shelf cavities and the ice sheet dynamic response to these oceanic changes. Results under RCP 2.6 scenario based on two CMIP5 climate models show an additional mass loss of 0 and 3 cm of SLE on average compared to simulations done under present-day conditions for the two CMIP5 forcings used and display limited mass gain in East Antarctica.
Geist, Emily ; Gallagher, John S. ; Kotulla, Ralf ; Oskinova, Lidia M. ; Hamann, Wolf-Rainer ; Ramachandran, Varsha ; Sabbi, Elena ; Smith, Linda J. ; Kniazev, Alexey ; Nota, Antonella ; Rickard, Matthew J.
The NGC 346 young stellar system and associated N66 giant H ii region in the Small Magellanic Cloud are the nearest example of a massive star-forming event in a low metallicity (Z approximate to 0.2Z (circle dot)) galaxy. With an age of less than or similar to 3 Myr this system provides a unique opportunity to study relationships between massive stars and their associated H ii region. Using archival data, we derive a total H alpha luminosity of L(H alpha) = 4.1 x 10(38) erg s(-1) corresponding to an H-photoionization rate of 3 x 10(50) s(-1). A comparison with a predicted stellar ionization rate derived from the more than 50 known O-stars in NGC 346, including massive stars recently classified from Hubble Space Telescope far-ultraviolet (FUV) spectra, indicates an approximate ionization balance. Spectra obtained with SALT suggest the ionization structure of N66 could be consistent with some leakage of ionizing photons. Due to the low metallicity, the FUV luminosity from NGC 346 is not confined to the interstellar cloud associated with N66. Ionization extends through much of the spatial extent of the N66 cloud complex, and most of the cloud mass is not ionized. The stellar mass estimated from nebular L(H alpha) appears to be lower than masses derived from the census of resolved stars which may indicate a disconnect between the formation of high and low mass stars in this region. We briefly discuss implications of the properties of N66 for studies of star formation and stellar feedback in low metallicity environments.
Crighton, Neil H. M. ; Prochaska, J. Xavier ; Murphy, Michael T. ; Worseck, Gabor ; Smith, Britton D.
Lyman limit systems (LLSs) trace the low-density circumgalactic medium and the most dense regions of the intergalactic medium, so their number density and evolution at high-redshift, just after reionization, are important to constrain. We present a survey for LLSs at high redshifts, z(LLS) = 3.5-5.4, in the homogeneous data set of 153 optical quasar spectra at z similar to 5 from the Giant Gemini GMOS survey. Our analysis includes detailed investigation of survey biases using mock spectra which provide important corrections to the raw measurements. We estimate the incidence of LLSs per unit redshift at z approximate to 4.4 to be l(z) = 2.6 +/- 0.4. Combining our results with previous surveys at z(LLS) < 4, the best-fit power-law evolution is l(z) = l(*)[(1 + z)/4](alpha) with l* = 1.46 +/- 0.11 and alpha = 1.70 +/- 0.22 (68 per cent confidence intervals). Despite hints in previous z(LLS) < 4 results, there is no indication for a deviation from this single power-law soon after reionization. Finally, we integrate our new results with previous surveys of the intergalactic and circumgalactic media to constrain the hydrogen column density distribution function, f(N-HI, X), over 10 orders ofmagnitude. The data at z similar to 5 are not well-described by the f(N-HI, X) model previously reported for z similar to 2-3 (after re-scaling) and a 7-pivot model fitting the full z similar to 2-5 data set is statistically unacceptable. We conclude that there is significant evolution in the shape of f(N-HI, X) over this similar to 2-billion-year period.
NGTS-5b
(2019)
Eigmüller, Philipp ; Chaushev, Alexander ; Gillen, Edward ; Smith, Alexis ; Nielsen, Louise D. ; Turner, Oliver ; Csizmadia, Szilard ; Smalley, Barry ; Bayliss, Daniel ; Belardi, Claudia ; Bouchy, Francois ; Burleigh, Matthew R. ; Cabrera, Juan ; Casewell, Sarah L. ; Chazelas, Bruno ; Cooke, Benjamin F. ; Erikson, Anders ; Gansicke, Boris T. ; Guenther, Maximilian N. ; Goad, Michael R. ; Grange, Andrew ; Jackman, James A. G. ; Jenkins, James S. ; McCormac, James ; Moyano, Maximiliano ; Pollacco, Don ; Poppenhäger, Katja ; Queloz, Didier ; Raynard, Liam ; Rauer, Heike ; Udry, Stephane ; Walker, Simon. R. ; Watson, Christopher A. ; West, Richard G. ; Wheatley, Peter J.
Context. Planetary population analysis gives us insight into formation and evolution processes. For short-period planets, the sub-Jovian desert has been discussed in recent years with regard to the planet population in the mass/period and radius/period parameter space without taking stellar parameters into account. The Next Generation Transit Survey (NGTS) is optimised for detecting planets in this regime, which allows for further analysis of the sub-Jovian desert. Aims. With high-precision photometric surveys (e.g. with NGTS and TESS), which aim to detect short period planets especially around M/K-type host stars, stellar parameters need to be accounted for when empirical data are compared to model predictions. Presenting a newly discovered planet at the boundary of the sub-Jovian desert, we analyse its bulk properties and use it to show the properties of exoplanets that border the sub-Jovian desert. Methods. Using NGTS light curve and spectroscopic follow-up observations, we confirm the planetary nature of planet NGTS-5b and determine its mass. Using exoplanet archives, we set the planet in context with other discoveries. Results. NGTS-5b is a short-period planet with an orbital period of 3.3569866 +/- 0.0000026 days. With a mass of 0.229 +/- 0.037 M-Jup and a radius of 1.136 +/- 0.023 R-Jup, it is highly inflated. Its mass places it at the upper boundary of the sub-Jovian desert. Because the host is a K2 dwarf, we need to account for the stellar parameters when NGTS-5b is analysed with regard to planet populations. Conclusions. With red-sensitive surveys (e.g. with NGTS and TESS), we expect many more planets around late-type stars to be detected. An empirical analysis of the sub-Jovian desert should therefore take stellar parameters into account.