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Bayesian data analysis in the phonetic sciences

  • This tutorial analyzes voice onset time (VOT) data from Dongbei (Northeastern) Mandarin Chinese and North American English to demonstrate how Bayesian linear mixed models can be fit using the programming language Stan via the R package brms. Through this case study, we demonstrate some of the advantages of the Bayesian framework: researchers can (i) flexibly define the underlying process that they believe to have generated the data; (ii) obtain direct information regarding the uncertainty about the parameter that relates the data to the theoretical question being studied; and (iii) incorporate prior knowledge into the analysis. Getting started with Bayesian modeling can be challenging, especially when one is trying to model one’s own (often unique) data. It is difficult to see how one can apply general principles described in textbooks to one’s own specific research problem. We address this barrier to using Bayesian methods by providing three detailed examples, with source code to allow easy reproducibility. The examples presented areThis tutorial analyzes voice onset time (VOT) data from Dongbei (Northeastern) Mandarin Chinese and North American English to demonstrate how Bayesian linear mixed models can be fit using the programming language Stan via the R package brms. Through this case study, we demonstrate some of the advantages of the Bayesian framework: researchers can (i) flexibly define the underlying process that they believe to have generated the data; (ii) obtain direct information regarding the uncertainty about the parameter that relates the data to the theoretical question being studied; and (iii) incorporate prior knowledge into the analysis. Getting started with Bayesian modeling can be challenging, especially when one is trying to model one’s own (often unique) data. It is difficult to see how one can apply general principles described in textbooks to one’s own specific research problem. We address this barrier to using Bayesian methods by providing three detailed examples, with source code to allow easy reproducibility. The examples presented are intended to give the reader a flavor of the process of model-fitting; suggestions for further study are also provided. All data and code are available from: https://osf.io/g4zpv.show moreshow less

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Author details:Shravan VasishthORCiDGND, Bruno NicenboimORCiDGND, Mary E. Beckman, Fangfang LiGND, Eun Jong Kong
DOI:https://doi.org/10.1016/j.wocn.2018.07.008
ISSN:0095-4470
Pubmed ID:https://pubmed.ncbi.nlm.nih.gov/30197458
Title of parent work (English):Journal of phonetics
Subtitle (English):a tutorial introduction
Publisher:Elsevier
Place of publishing:London
Publication type:Article
Language:English
Year of first publication:2018
Publication year:2018
Release date:2021/07/08
Tag:Bayesian data analysis; Gender effects; Linear mixed models; Voice onset time; Vowel duration
Volume:71
Number of pages:15
First page:147
Last Page:161
Funding institution:NIHUnited States Department of Health & Human ServicesNational Institutes of Health (NIH) - USA [DC02932]; Ohio State University Department of Linguistics Targeted Investment Award; University of Lethbridge; Volkswagen FoundationVolkswagen [89 953]; Deutsche ForschungsgemeinschaftGerman Research Foundation (DFG) [VA 482/8-1]
Organizational units:Humanwissenschaftliche Fakultät / Strukturbereich Kognitionswissenschaften / Department Linguistik
DDC classification:4 Sprache / 41 Linguistik / 410 Linguistik
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