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The selaginella genome identifies genetic changes associated with the evolution of vascular plants
(2011)
Vascular plants appeared similar to 410 million years ago, then diverged into several lineages of which only two survive: the euphyllophytes (ferns and seed plants) and the lycophytes. We report here the genome sequence of the lycophyte Selaginella moellendorffii (Selaginella), the first nonseed vascular plant genome reported. By comparing gene content in evolutionarily diverse taxa, we found that the transition from a gametophyte- to a sporophyte-dominated life cycle required far fewer new genes than the transition from a nonseed vascular to a flowering plant, whereas secondary metabolic genes expanded extensively and in parallel in the lycophyte and angiosperm lineages. Selaginella differs in posttranscriptional gene regulation, including small RNA regulation of repetitive elements, an absence of the trans-acting small interfering RNA pathway, and extensive RNA editing of organellar genes.
Preface
(2011)
The public promotion of renewable energies is expected to increase the number of biogas plants and stimulate energy crops cultivation (e. g. maize) in Germany. In order to assess the indirect effects of the resulting land-use changes on biodiversity, we developed six land-use scenarios and simulated the responses of six farmland wildlife species with the spatially explicit agent-based model system ALMaSS. The scenarios differed in composition and spatial configuration of arable crops. We implemented scenarios where maize for energy production replaced 15% and 30% of the area covered by other cash crops. Biogas maize farms were either randomly distributed or located within small or large aggregation clusters. The animal species investigated were skylark (Alauda arvensis), grey partridge (Perdix perdix), European brown hare (Lepus europaeus), field vole (Microtus agrestis), a linyphiid spider (Erigone atra) and a carabid beetle (Bembidion lampros). The changes in crop composition had a negative effect on the population sizes of skylark, partridge and hare and a positive effect on the population sizes of spider and beetle and no effect on the population size of vole. An aggregated cultivation of maize amplified these effects for skylark. Species responses to changes in the crop composition were consistent across three differently structured landscapes. Our work suggests that with the compliance to some recommendations, negative effects of biogas-related land-use change on the populations of the six representative farmland species can largely be avoided.
Phase models are a powerful method to quantify the coupled dynamics of nonlinear oscillators from measured data. We use two phase modeling methods to quantify the dynamics of pairs of coupled electrochemical oscillators, based on the phases of the two oscillators independently and the phase difference, respectively. We discuss the benefits of the two-dimensional approach relative to the one-dimensional approach using phase difference. We quantify the dependence of the coupling functions on the coupling magnitude and coupling time delay. We show differences in synchronization predictions of the two models using a toy model. We show that the two-dimensional approach reveals behavior not detected by the one-dimensional model in a driven experimental oscillator. This approach is broadly applicable to quantify interactions between nonlinear oscillators, especially where intrinsic oscillator sensitivity and coupling evolve with time.