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Pioneered by Clark's microelectrode more than half a century ago, there has been substantial interest in developing new, miniaturized optical methods to detect molecular oxygen inside cells. While extensively used for animal tissue measurements, applications of intracellular optical oxygen biosensors are still scarce in plant science. A critical aspect is the strong autofluorescence of the green plant tissue that interferes with optical signals of commonly used oxygen probes. A recently developed dual-frequency phase modulation technique can overcome this limitation, offering new perspectives for plant research. This review gives an overview on the latest optical sensing techniques and methods based on phosphorescence quenching in diverse tissues and discusses the potential pitfalls for applications in plants. The most promising oxygen sensitive probes are reviewed plus different oxygen sensing structures ranging from micro-optodes to soluble nanoparticles. Moreover, the applicability of using heterologously expressed oxygen binding proteins and fluorescent proteins to determine changes in the cellular oxygen concentration are discussed as potential non-invasive cellular oxygen reporters.
rezensiertes Werk: Jeffrey Burns: The music of psalms, Proverbs and Job in the Hebrew bible : A revised theory of musical accents in the Hebrew bible ; general analysis, bibliography, table of contents CD with complete text and audio files of musically reconstructed psalms, proverbs and Job, sung by computer speech synthesis. Wiesbaden : Harrassowitz Verlag, 2011. 169 S. ISBN 978-3-447-06191-9
The blowfly salivary gland - A model system for analyzing the regulation of plasma membrane V-ATPase
(2012)
Vacuolar H+-ATPases (V-ATPases) are heteromultimeric proteins that use the energy of ATP hydrolysis for the electrogenic transport of protons across membranes. They are common to all eukaryotic cells and are located in the plasma membrane or in membranes of acid organelles. In many insect epithelia, V-ATPase molecules reside in large numbers in the apical plasma membrane and create an electrochemical proton gradient that is used for the acidification or alkalinization of the extracellular space, the secretion or reabsorption of ions and fluids, the import of nutrients, and diverse other cellular activities. Here, we summarize our results on the functions and regulation of V-ATPase in the tubular salivary gland of the blowfly Calliphora vicina. In this gland, V-ATPase activity energizes the secretion of a KCl-rich saliva in response to the neurohormone serotonin (5-HT). Because of particular morphological and physiological features, the blowfly salivary glands are a superior and exemplary system for the analysis of the intracellular signaling pathways and mechanisms that modulate V-ATPase activity and solute transport in an insect epithelium.
Over the last two decades, macroecology the analysis of large-scale, multi-species ecological patterns and processes has established itself as a major line of biological research. Analyses of statistical links between environmental variables and biotic responses have long and successfully been employed as a main approach, but new developments are due to be utilized. Scanning the horizon of macroecology, we identified four challenges that will probably play a major role in the future. We support our claims by examples and bibliographic analyses. 1) Integrating the past into macroecological analyses, e.g. by using paleontological or phylogenetic information or by applying methods from historical biogeography, will sharpen our understanding of the underlying reasons for contemporary patterns. 2) Explicit consideration of the local processes that lead to the observed larger-scale patterns is necessary to understand the fine-grain variability found in nature, and will enable better prediction of future patterns (e.g. under environmental change conditions). 3) Macroecology is dependent on large-scale, high quality data from a broad spectrum of taxa and regions. More available data sources need to be tapped and new, small-grain large-extent data need to be collected. 4) Although macroecology already lead to mainstreaming cutting-edge statistical analysis techniques, we find that more sophisticated methods are needed to account for the biases inherent to sampling at large scale. Bayesian methods may be particularly suitable to address these challenges. To continue the vigorous development of the macroecological research agenda, it is time to address these challenges and to avoid becoming too complacent with current achievements.
In this review we confront the current theoretical understanding of particle acceleration at relativistic outflows with recent observational results on various source classes thought to involve such outflows, e.g. gamma-ray bursts, active galactic nuclei, and pulsar wind nebulae. We highlight the possible contributions of these sources to ultra-high-energy cosmic rays.
Hirsch, L., Vom Schtetl in den Hörsaal, jüdische Frauen und Kulttransfer; Berlin, Metropol, 2010
(2012)
Within the field of species distribution modelling an apparent dichotomy exists between process-based and correlative approaches, where the processes are explicit in the former and implicit in the latter. However, these intuitive distinctions can become blurred when comparing species distribution modelling approaches in more detail. In this review article, we contrast the extremes of the correlativeprocess spectrum of species distribution models with respect to core assumptions, model building and selection strategies, validation, uncertainties, common errors and the questions they are most suited to answer. The extremes of such approaches differ clearly in many aspects, such as model building approaches, parameter estimation strategies and transferability. However, they also share strengths and weaknesses. We show that claims of one approach being intrinsically superior to the other are misguided and that they ignore the processcorrelation continuum as well as the domains of questions that each approach is addressing. Nonetheless, the application of process-based approaches to species distribution modelling lags far behind more correlative (process-implicit) methods and more research is required to explore their potential benefits. Critical issues for the employment of species distribution modelling approaches are given, together with a guideline for appropriate usage. We close with challenges for future development of process-explicit species distribution models and how they may complement current approaches to study species distributions.
This study focuses on the prediction of event-based runoff coefficients (an important descriptor of flood events) for nested catchments up to an area of 50?km(2) in the Eastern Ore Mountains. The four main objectives of the study are (i) the prediction of runoff coefficients with the statistical method of generalized linear models, (ii) the comparison of the results of the linear models with estimates of a distributed conceptual model, (iii) the comparison of the dynamics of observed soil moisture and simulated saturation deficit of the hydrological model and (iv) the analysis of the relationship between runoff coefficient and observed and simulated wetness. Different predictor variables were selected to describe the runoff coefficient and were differentiated into variables describing the catchment’s antecedent wetness and meteorological forcing. The best statistical model was estimated in a stepwise approach on the basis of hierarchical partitioning, an exhaustive search algorithm and model validation with jackknifing. We then applied the rainfall runoff model WaSiM ETH to predict the runoff processes for the two larger catchments. Locally measured small-scale soil moisture (acquired at a scale of four to five magnitudes smaller than the catchment) was identified as one of the key predictor variables for the estimation of the runoff coefficient with the general linear model. It was found that the relationship betweenobserved and simulated (using WaSiM ETH) wetness is strongly hysteretic. The runoff coefficients derived from the rainfall runoff simulations systematically underestimate the observed values. Copyright (C) 2012 John Wiley & Sons, Ltd.
rezensiertes Werk: Magdalena Bendowska, Jan Doktór: Świat ukryty w Księgach. Stare Druki hebrajskie ze zbiorów Żydowskiego Instytutu Historycznego [Die Welt, in Büchern verborgen – Alte hebräische Drucke aus den Sammlungen des Jüdischen Historischen Instituts in Warschau]. - Warschau : 2011, 140 S. ISBN 978-83-61850-40-3
We report the discovery of two new Galactic candidate luminous blue variable (LBV) stars via detection of circular shells (typical of confirmed and candidate LBVs) and follow-up spectroscopy of their central stars. The shells were detected at 22 mu m in the archival data of the Mid-Infrared All Sky Survey carried out with the Wide-field Infrared Survey Explorer (WISE). Follow-up optical spectroscopy of the central stars of the shells conducted with the renewed Southern African Large Telescope (SALT) showed that their spectra are very similar to those of the well-known LBVs P Cygni and AG Car, and the recently discovered candidate LBV MN112, which implies the LBV classification for these stars as well. The LBV classification of both stars is supported by detection of their significant photometric variability: one of them brightened in the R and I bands by 0.68 +/- 0.10 and 0.61 +/- 0.04 mag, respectively, during the last 1318 years, while the second one (known as Hen 3-1383) varies its B, V, R, I and Ks brightnesses by similar or equal to 0.50.9 mag on time-scales from 10 d to decades. We also found significant changes in the spectrum of Hen 3-1383 on a time-scale of similar or equal to 3 months, which provides additional support for the LBV classification of this star. Further spectrophotometric monitoring of both stars is required to firmly prove their LBV status. We discuss a connection between the location of massive stars in the field and their fast rotation, and suggest that the LBV activity of the newly discovered candidate LBVs might be directly related to their possible runaway status.
Objective: How do patients with severe aphasia perform in the clock test? Methods:Ten patients with severe aphasia performed the clock test in two modes: copy a given clock (copy condition) and set a clock by drawing the clock hands, where a given digital display (11:10) should be transformed into an analogue display (time setting condition). Results: Not a single patient with severe aphasia was able to master any mode of the clock test. Both copy and time conditions were severely impaired by executive, conceptual, motoric visuospatial and apraxic disorders - impairments of language system were only one of numerous influencing factors. Conclusions and clinical relevance:The clock test measures and requires for its execution so many different cognitive, motoric and perceptual functions that it cannot adequately differentiate between patients with severe aphasia and other severe brain damage.
Renal and cardiac effects of DPP-4 inhibitors - from preclinical development to clinical research
(2012)
Inhibitors of type 4 dipeptidyl peptidase (DDP-4) were developed and approved for the oral treatment of type 2 diabetes. Its mode of action is to inhibit the degradation of incretins, such as type 1 glucagon like peptide (GLP-1), and GIP. GLP-1 stimulates glucose-dependent insulin secretion from pancreatic beta-cells and suppresses glucagon release from alpha-cells, thereby improving glucose control. Besides its action on the pancreas type 1 glucagon like peptide has direct effects on the heart, vessels and kidney mainly via the type 1 glucagon like peptide receptor (GLP-1R). Moreover, there are substrates of DPP-4 beyond incretins that have proven renal and cardiovascular effects such as BNP/ANP, NPY, PYY or SDF-1 alpha. Preclinical evidence suggests that DPP-4 inhibitors may be effective in acute and chronic renal failure as well as in cardiac diseases like myocardial infarction and heart failure. Interestingly, large cardiovascular meta-analyses of combined Phase II/III clinical trials with DPP-4 inhibitors point all in the same direction: a potential reduction of cardiovascular events in patients treated with these agents. A pooled analysis of pivotal Phase III, placebo-controlled, registration studies of linagliptin further showed a significant reduction of urinary albumin excretion after 24 weeks of treatment. The observation suggests direct renoprotective effects of DPP-4 inhibition that may go beyond its glucose-lowering potential. Type 4 dipeptidyl peptidase inhibitors have been shown to be very well tolerated in general, but for those excreted via the kidney dose adjustments according to renal function are needed to avoid side effects. In conclusion, the direct cardiac and renal effects seen in preclinical studies as well as meta-analysis of clinical trials may offer additional potentials - beyond improvement of glycemic control - for this newer class of drugs, such as acute kidney failure, chronic kidney failure as well as acute myocardial infarction and heart failure.
Although intensification of toxic cyanobacterial blooms over the last decade is a matter of growing concern due to bloom impact on water quality, the biological role of most of the toxins produced is not known. In this critical review we focus primarily on the biological role of two toxins, microcystins and cylindrospermopsin, in inter- and intra-species communication and in nutrient acquisition. We examine the experimental evidence supporting some of the dogmas in the field and raise several open questions to be dealt with in future research. We do not discuss the health and environmental implications of toxin presence in the water body.
The filtering function of soil is an important ecosystem service for groundwater and surface water protection. The efficiency of soils as a filter depends on the behaviour of pollutants in the soil and the hydrological transport processes. This paper aims to identify knowledge gaps in processes influencing pollutant behaviour in soils and their potential transport to groundwater. Currently most soil-filter function research is approached from two disciplines, one originating from agronomical/environmental sciences; one from more fundamental hydrological process research. Combining insights and approaches from both disciplines through collaboration could lead to better understanding of this complex system and enhance assessments of management strategy changes, both over the long term as well as in different climatic settings.
Understanding the manner and degree to which topography in active mountain ranges reflects deformation of the Earth's surface remains a first order goal of tectonic geomorphology. A substantial body of research in the past decade demonstrates that incising channel systems play a central role in setting relationships among topographic relief, differential rock uplift rate, and climatically modulated erosional efficiency. This review provides an introduction to the analysis and interpretation of channel profiles in erosional mountain ranges. We show that existing data support theoretical expectations of positive, monotonic relationships between channel steepness index, a measure of channel gradient normalized for downstream increases in drainage area, and erosion rate at equilibrium, and that the transient response to perturbations away from equilibrium engenders specific spatial patterns in channel profiles that can be used to infer aspects of the forcing. These aspects of channel behavior lay the foundation for a series of case studies that we use to illustrate how focused, quantitative analysis of channel morphology can provide insight into the spatial and temporal dynamics of active deformation. Although the complexities of river response to climate, lithology, and uplift patterns mean that multiple interpretations of topographic data alone will always possible, we show that application of stream profile analysis can be a powerful reconnaissance tool with which to interrogate the rates and patterns of deformation in active mountain belts.
Aim Biotic interactions within guilds or across trophic levels have widely been ignored in species distribution models (SDMs). This synthesis outlines the development of species interaction distribution models (SIDMs), which aim to incorporate multispecies interactions at large spatial extents using interaction matrices. Location Local to global. Methods We review recent approaches for extending classical SDMs to incorporate biotic interactions, and identify some methodological and conceptual limitations. To illustrate possible directions for conceptual advancement we explore three principal ways of modelling multispecies interactions using interaction matrices: simple qualitative linkages between species, quantitative interaction coefficients reflecting interaction strengths, and interactions mediated by interaction currencies. We explain methodological advancements for static interaction data and multispecies time series, and outline methods to reduce complexity when modelling multispecies interactions. Results Classical SDMs ignore biotic interactions and recent SDM extensions only include the unidirectional influence of one or a few species. However, novel methods using error matrices in multivariate regression models allow interactions between multiple species to be modelled explicitly with spatial co-occurrence data. If time series are available, multivariate versions of population dynamic models can be applied that account for the effects and relative importance of species interactions and environmental drivers. These methods need to be extended by incorporating the non-stationarity in interaction coefficients across space and time, and are challenged by the limited empirical knowledge on spatio-temporal variation in the existence and strength of species interactions. Model complexity may be reduced by: (1) using prior ecological knowledge to set a subset of interaction coefficients to zero, (2) modelling guilds and functional groups rather than individual species, and (3) modelling interaction currencies and species effect and response traits. Main conclusions There is great potential for developing novel approaches that incorporate multispecies interactions into the projection of species distributions and community structure at large spatial extents. Progress can be made by: (1) developing statistical models with interaction matrices for multispecies co-occurrence datasets across large-scale environmental gradients, (2) testing the potential and limitations of methods for complexity reduction, and (3) sampling and monitoring comprehensive spatio-temporal data on biotic interactions in multispecies communities.
Water soluble polymers can be incorporated into reverse microemulsion droplets without leaving the isotropic phase region. When the polymer is attached to the surfactant film the bending elasticity is changed, and droplet-droplet interactions are influenced. Different methods are available for studying the droplet-droplet interactions in more detail, e.g. SANS. SAXS and DLS. Conductometric measurements are very useful for detecting exchange processes between the droplets. In presence of polyampholytes a pH dependent tuning of the membrane properties becomes possible, experimentally detectable by conductometry.
Recent developments in the synthesis of polyelectrolytes are highlighted, with respect to the nature of the ionic groups, the polymer backbones, synthetic methods, and additional functionality given to the polyelectrolytes. In fact, the synthesis of new polyelectrolytes is mostly driven by material aspects, currently. The article pays particular attention to strong polyelectrolytes, and the new methods of controlled polymerization. These methods and the so-called click reactions have enabled novel designs of polyelectrolytes. Nevertheless, the polymerization of unprotected ionic monomers is still challenging and limits the synthetic possibilities. The structural aspects are complemented by considerations with respect to the aspired uses of the new polyelectrolytes.
Conventional linear and time-resolved spectroscopic techniques are often not appropriate to elucidate specific pigment-pigment interactions in light-harvesting pigment-protein complexes (LHCs). Nonlinear (laser-) spectroscopic techniques, including nonlinear polarization spectroscopy in the frequency domain (NLPF) as well as step-wise (resonant) and simultaneous (non-resonant) two-photon excitation spectroscopies may be advantageous in this regard. Nonlinear spectroscopies have been used to elucidate substructure(s) of very complex spectra, including analyses of strong excitonic couplings between chlorophylls and of interactions between (bacterio) chlorophylls and "optically dark'' states of carotenoids in LHCs, including the major antenna complex of higher plants, LHC II. This article shortly reviews our previous study and outlines perspectives regarding the application of selected nonlinear laser-spectroscopic techniques to disentangle structure-function relationships in LHCs and other pigment-protein complexes.
The majority of research on biodiversity ecosystem functioning in laboratories has concentrated on a few traits, but there is increasing evidence from the field that functional diversity controls ecosystem functioning more often than does species number. Given the importance of traits as predictors of niche complementarity and community structures, we (1) examine how the diversity sensu lato of forest trees, freshwater fishes and soil invertebrates might support ecosystem functioning and (2) discuss the relevance of productive biota for monophyletic assemblages (taxocenes).
In terrestrial ecosystems, correlating traits to abiotic factors is complicated by the appropriate choice of body-size distributions. Angiosperm and gymnosperm trees, for example, show metabolic incongruences in their respiration rates despite their pronounced macroecological scaling. Scaling heterotrophic organisms within their monophyletic assemblages seems more difficult than scaling autotrophs: in contrast to the generally observed decline of mass-specific metabolic rates with body mass within metazoans, soil organisms such as protozoans show opposite mass-specific trends.
At the community level, the resource demand of metazoans shapes multitrophic interactions. Hence, population densities and their food web relationships reflect functional diversity, but the influence of biodiversity on stability and ecosystem functioning remains less clear. We focused on fishes in 18 riverine food webs, where the ratio of primary versus secondary extinctions (hereafter, 'extinction partitioning') summarizes the responses of fish communities to primary species loss (deletions) and its consequences. Based on extinction partitioning, our high-diversity food webs were just as (or even more) vulnerable to extinctions as low-diversity food webs.
Our analysis allows us to assess consequences of the relocation or removal of fish species and to help with decision-making in sustainable river management. The study highlights that the topology of food webs (and not simply taxonomic diversity) plays a greater role in stabilizing the food web and enhancing ecological services than is currently acknowledged.