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The problem under consideration in the thesis is a two level atom in a photonic crystal and a pumping laser. The photonic crystal provides an environment for the atom, that modifies the decay of the exited state, especially if the atom frequency is close to the band gap. The population inversion is investigated als well as the emission spectrum. The dynamics is analysed in the context of open quantum systems. Due to the multiple reflections in the photonic crystal, the system has a finite memory that inhibits the Markovian approximation. In the Heisenberg picture the equations of motion for the system variables form a infinite hierarchy of integro-differential equations. To get a closed system, approximations like a weak coupling approximation are needed. The thesis starts with a simple photonic crystal that is amenable to analytic calculations: a one-dimensional photonic crystal, that consists of alternating layers. The Bloch modes inside and the vacuum modes outside a finite crystal are linked with a transformation matrix that is interpreted as a transfer matrix. Formulas for the band structure, the reflection from a semi-infinite crystal, and the local density of states in absorbing crystals are found; defect modes and negative refraction are discussed. The quantum optics section of the work starts with the discussion of three problems, that are related to the full resonance fluorescence problem: a pure dephasing model, the driven atom and resonance fluorescence in free space. In the lowest order of the system-environment coupling, the one-time expectation values for the full problem are calculated analytically and the stationary states are discussed for certain cases. For the calculation of the two time correlation functions and spectra, the additional problem of correlations between the two times appears. In the Markovian case, the quantum regression theorem is valid. In the general case, the fluctuation dissipation theorem can be used instead. The two-time correlation functions are calculated by the two different methods. Within the chosen approximations, both methods deliver the same result. Several plots show the dependence of the spectrum on the parameters. Some examples for squeezing spectra are shown with different approximations. A projection operator method is used to establish two kinds of Markovian expansion with and without time convolution. The lowest order is identical with the lowest order of system environment coupling, but higher orders give different results.
A detailed description of the characteristics of antimicrobial peptides (AMPs) is highly demanded, since the resistance against traditional antibiotics is an emerging problem in medicine. They are part of the innate immune system in every organism, and they are very efficient in the protection against bacteria, viruses, fungi and even cancer cells. Their advantage is that their target is the cell membrane, in contrast to antibiotics which disturb the metabolism of the respective cell type. This allows AMPs to be more active and faster. The lack of an efficient therapy for some cancer types and the evolvement of resistance against existing antitumor agents make AMPs promising in cancer therapy besides being an alternative to traditional antibiotics. The aim of this work was the physical-chemical characterization of two fragments of LL-37, a human antimicrobial peptide from the cathelicidin family. The fragments LL-32 and LL-20 exhibited contrary behavior in biological experiments concerning their activity against bacterial cells, human cells and human cancer cells. LL-32 had even a higher activity than LL-37, while LL-20 had almost no effect. The interaction of the two fragments with model membranes was systematically studied in this work to understand their mode of action. Planar lipid films were mainly applied as model systems in combination with IR-spectroscopy and X-ray scattering methods. Circular Dichroism spectroscopy in bulk systems completed the results. In the first approach, the structure of the peptides was determined in aqueous solution and compared to the structure of the peptides at the air/water interface. In bulk, both peptides are in an unstructured conformation. Adsorbed and confined to at the air-water interface, the peptides differ drastically in their surface activity as well as in the secondary structure. While LL-32 transforms into an α-helix lying flat at the water surface, LL-20 stays partly unstructured. This is in good agreement with the high antimicrobial activity of LL-32. In the second approach, experiments with lipid monolayers as biomimetic models for the cell membrane were performed. It could be shown that the peptides fluidize condensed monolayers of negatively charged DPPG which can be related to the thinning of a bacterial cell membrane. An interaction of the peptides with zwitterionic PCs, as models for mammalian cells, was not clearly observed, even though LL-32 is haemolytic. In the third approach, the lipid monolayers were more adapted to the composition of human erythrocyte membranes by incorporating sphingomyelin (SM) into the PC monolayers. Physical-chemical properties of the lipid films were determined and the influence of the peptides on them was studied. It could be shown that the interaction of the more active LL-32 is strongly increased for heterogeneous lipid films containing both gel and fluid phases, while the interaction of LL-20 with the monolayers was unaffected. The results indicate an interaction of LL-32 with the membrane in a detergent-like way. Additionally, the modelling of the peptide interaction with cancer cells was performed by incorporating some negatively charged lipids into the PC/SM monolayers, but the increased charge had no effect on the interaction of LL-32. It was concluded, that the high anti-cancer activity of the peptide originates from the changed fluidity of cell membrane rather than from the increased surface charge. Furthermore, similarities to the physical-chemical properties of melittin, an AMP from the bee venom, were demonstrated.
This thesis rests on two large Active Galactic Nuclei (AGNs) surveys. The first survey deals with galaxies that host low-level AGNs (LLAGN) and aims at identifying such galaxies by quantifying their variability. While numerous studies have shown that AGNs can be variable at all wavelengths, the nature of the variability is still not well understood. Studying the properties of LLAGNs may help to understand better galaxy evolution, and how AGNs transit between active and inactive states. In this thesis, we develop a method to extract variability properties of AGNs. Using multi-epoch deep photometric observations, we subtract the contribution of the host galaxy at each epoch to extract variability and estimate AGN accretion rates. This pipeline will be a powerful tool in connection with future deep surveys such as PANSTARS. The second study in this thesis describes a survey of X-ray selected AGN hosts at redshifts z>1.5 and compares them to quiescent galaxies. This survey aims at studying environments, sizes and morphologies of star-forming high-redshift AGN hosts in the COSMOS Survey at the epoch of peak AGN activity. Between redshifts 1.5<z<3.8, the COSMOS HST/ACS imaging probes the UV regime, where separating the AGN flux from its host galaxy is very challenging. Nevertheless, we successfully derived the structural properties of 249 AGN hosts using two-dimensional surface-brightness profile fitting with the GALFIT package. This is the largest sample of AGN hosts at redshift z>1.5 to date. We analyzed the evolution of structural parameters of AGN and non-AGN host galaxies with redshift, and compared their disturbance rates to identify the more probable AGN triggering mechanism in the 43.5<log_10 L_X<45 luminosity range. We also conducted mock AGN and quiescent galaxies observations to determine errors and corrections for the derived parameters. We find that the size-absolute magnitude relations of AGN hosts and non-AGN galaxies are very similar, with estimated mean sizes in both samples decreasing by ~50% between redshifts z=1.5 and z=3.5. Morphological classification of both active and quiescent galaxies shows that the majority of the AGN host galaxies are disc-dominated, with disturbance rates that are significantly lower than among the non-AGN galaxies. Such a finding suggests that Major Mergers are probably not responsible for triggering AGN accretion in most of these galaxies. Other secular mechanisms should therefore be responsible.
Unter geeigneten Wachstumsbedingungen weisen Algenkulturen oft eine größere Produktivität der Zellen auf, als sie bei höheren Pflanzen zu beobachten ist. Chlamydomonas reinhardtii-Zellen sind vergleichsweise klein. So beträgt das Zellvolumen während des vegetativen Zellzyklus etwa 50–3500 µm³. Im Vergleich zu höheren Pflanzen ist in einer Algensuspension die Konzentration der Biomasse allerdings gering. So enthält beispielsweise 1 ml einer üblichen Konzentration zwischen 10E6 und 10E7 Algenzellen. Quantifizierungen von Metaboliten oder Makromolekülen, die zur Modellierung von zellulären Prozessen genutzt werden, werden meist im Zellensemble vorgenommen. Tatsächlich unterliegt jedoch jede Algenzelle einer individuellen Entwicklung, die die Identifizierung charakteristischer allgemeingültiger Systemparameter erschwert. Ziel dieser Arbeit war es, biochemisch relevante Messgrößen in-vivo und in-vitro mit Hilfe optischer Verfahren zu identifizieren und zu quantifizieren. Im ersten Teil der Arbeit wurde ein Puls-Amplituden-Modulation(PAM)-Fluorimetriemessplatz zur Messung der durch äußere Einflüsse bedingten veränderlichen Chlorophyllfluoreszenz an einzelnen Zellen vorgestellt. Die Verwendung eines kommerziellen Mikroskops, die Implementierung empfindlicher Nachweiselektronik und einer geeignete Immobilisierungsmethode ermöglichten es, ein Signal-zu-Rauschverhältnis zu erreichen, mit dem Fluoreszenzsignale einzelner lebender Chlamydomonas-Zellen gemessen werden konnten. Insbesondere wurden das Zellvolumen und der als Maß für die Effizienz des Photosyntheseapparats bzw. die Zellfitness geltende Chlorophyllfluoreszenzparameter Fv/Fm ermittelt und ein hohes Maß an Heterogenität dieser zellulären Parameter in verschiedenen Entwicklungsstadien der synchronisierten Chlamydomonas-Zellen festgestellt. Im zweiten Teil der Arbeit wurden die bildgebende Laser-Scanning-Mikroskopie und anschließende Bilddatenanalyse zur quantitativen Erfassung der wachstumsabhängigen zellulären Parameter angewandt. Ein kommerzielles konfokales Mikroskop wurde um die Möglichkeit der nichtlinearen Mikroskopie erweitert. Diese hat den Vorteil einer lokalisierten Anregung, damit verbunden einer höheren Ortsauflösung und insgesamt geringeren Probenbelastung. Weiterhin besteht neben der Signalgewinnung durch Fluoreszenzanregung die Möglichkeit der Erzeugung der Zweiten Harmonischen (SHG) an biophotonischen Strukturen, wie der zellulären Stärke. Anhand der Verteilungsfunktionen war es möglich mit Hilfe von modelltheoretischen Ansätzen zelluläre Parameter zu ermitteln, die messtechnisch nicht unmittelbar zugänglich sind. Die morphologischen Informationen der Bilddaten ermöglichten die Bestimmung der Zellvolumina und die Volumina subzellularer Strukturen, wie Nuclei, extranucleäre DNA oder Stärkegranula. Weiterhin konnte die Anzahl subzellulärer Strukturen innerhalb einer Zelle bzw. eines Zellverbunds ermittelt werden. Die Analyse der in den Bilddaten enthaltenen Signalintensitäten war Grundlage einer relativen Konzentrationsbestimmung von zellulären Komponenten, wie DNA bzw. Stärke. Mit dem hier vorgestellten Verfahren der nichtlinearen Mikroskopie und nachfolgender Bilddatenanalyse konnte erstmalig die Verteilung des zellulären Stärkegehalts in einer Chlamydomonas-Population während des Wachstums bzw. nach induziertem Stärkeabbau verfolgt werden. Im weiteren Verlauf wurde diese Methode auch auf Gefrierschnitte höherer Pflanzen, wie Arabidopsis thaliana, angewendet. Im Ergebnis wurde gezeigt, dass viele zelluläre Parameter, wie das Volumen, der zelluläre DNA- und Stärkegehalt bzw. die Anzahl der Stärkegranula durch eine Lognormalverteilung, mit wachstumsabhängiger Parametrisierung, beschrieben werden. Zelluläre Parameter, wie Stoffkonzentration und zelluläres Volumen, zeigen keine signifikanten Korrelationen zueinander, woraus geschlussfolgert werden muss, dass es ein hohes Maß an Heterogenität der zellulären Parameter innerhalb der synchronisierten Chlamydomonas-Populationen gibt. Diese Aussage gilt sowohl für die als homogenste Form geltenden Synchronkulturen von Chlamydomonas reinhardtii als auch für die gemessenen zellulären Parameter im intakten Zellverbund höherer Pflanzen. Dieses Ergebnis ist insbesondere für modelltheoretische Betrachtungen von Relevanz, die sich auf empirische Daten bzw. zelluläre Parameter stützen welche im Zellensemble gemessen wurden und somit nicht notwendigerweise den zellulären Status einer einzelnen Zelle repräsentieren.