Refine
Document Type
- Article (11)
- Doctoral Thesis (1)
Language
- English (12)
Is part of the Bibliography
- yes (12)
Keywords
- metabolic networks (2)
- Algebraic geometry (1)
- Bifurcation parameters (1)
- Bioinformatik (1)
- Biomass (1)
- Calvin cycle (1)
- Chemical reaction network theory (1)
- Complexity (1)
- Dynamik (1)
- External structural measures (1)
Structural kinetic modeling (SKM) enables the analysis of dynamical properties of metabolic networks solely based on topological information and experimental data. Current SKM-based experiments are hampered by the time-intensive process of assigning model parameters and choosing appropriate sampling intervals for MonteCarlo experiments. We introduce a toolbox for the automatic and efficient construction and evaluation of structural kinetic models (SK models). Quantitative and qualitative analyses of network stability properties are performed in an automated manner. We illustrate the model building and analysis process in detailed example scripts that provide toolbox implementations of previously published literature models.