TY - JOUR A1 - Zemella, Anne A1 - Thoring, Lena A1 - Hoffmeister, Christian A1 - Samalikova, Maria A1 - Ehren, Patricia A1 - Wüstenhagen, Doreen Anja A1 - Kubick, Stefan T1 - Cell-free protein synthesis as a novel tool for directed glycoengineering of active erythropoietin JF - Scientific reports N2 - As one of the most complex post-translational modification, glycosylation is widely involved in cell adhesion, cell proliferation and immune response. Nevertheless glycoproteins with an identical polypeptide backbone mostly differ in their glycosylation patterns. Due to this heterogeneity, the mapping of different glycosylation patterns to their associated function is nearly impossible. In the last years, glycoengineering tools including cell line engineering, chemoenzymatic remodeling and site-specific glycosylation have attracted increasing interest. The therapeutic hormone erythropoietin (EPO) has been investigated in particular by various groups to establish a production process resulting in a defined glycosylation pattern. However commercially available recombinant human EPO shows batch-to-batch variations in its glycoforms. Therefore we present an alternative method for the synthesis of active glycosylated EPO with an engineered O-glycosylation site by combining eukaryotic cell-free protein synthesis and site-directed incorporation of non-canonical amino acids with subsequent chemoselective modifications. Y1 - 2018 U6 - https://doi.org/10.1038/s41598-018-26936-x SN - 2045-2322 VL - 8 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Sallen, Jeffrey A1 - Hirschmann, Florian A1 - Herrmann, Christian T1 - Evaluation and Adaption of the Trier Inventory for Chronic Stress (TICS) for Assessment in Competitive Sports JF - Frontiers in psychology N2 - The demands of a career in competitive sports can lead to chronic stress perception among athletes if there is a non-conformity of requirements and available coping resources. The Trier Inventory for Chronic Stress (TICS) (Schulz et al., 2004) is said to be thoroughly validated. Nevertheless, it has not yet been subjected to a confirmatory factor analysis. The present study aims (1) to evaluate the factorial validity of the TICS within the context of competitive sports and (2) to adapt a short version (TICS-36). The total sample consisted of 564 athletes (age in years: M = 19.1, SD = 3.70). The factor structure of the original TICS did not adequately fit the present data, whereas the short version presented a satisfactory fit. The results indicate that the TICS-36 is an economical instrument for gathering interpretable information about chronic stress. For assessment in competitive sports with TICS-36, we generated overall and gender-specific norm values. KW - chronic stressors KW - mental health KW - athletes KW - stress measurement KW - Olympic sports KW - factor analysis KW - measurement invariance Y1 - 2018 U6 - https://doi.org/10.3389/fpsyg.2018.00308 SN - 1664-1078 VL - 9 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Donat, Stefan A1 - Lourenco, Marta Sofia Rocha A1 - Paolini, Alessio A1 - Otten, Cecile A1 - Renz, Marc A1 - Abdelilah-Seyfried, Salim T1 - Heg1 and Ccm1/2 proteins control endocardial mechanosensitivity during zebrafish valvulogenesis JF - eLife N2 - Endothelial cells respond to different levels of fluid shear stress through adaptations of their mechanosensitivity. Currently, we lack a good understanding of how this contributes to sculpting of the cardiovascular system. Cerebral cavernous malformation (CCM) is an inherited vascular disease that occurs when a second somatic mutation causes a loss of CCM1/KRIT1, CCM2, or CCM3 proteins. Here, we demonstrate that zebrafish Krit1 regulates the formation of cardiac valves. Expression of heg1, which encodes a binding partner of Krit1, is positively regulated by blood-flow. In turn, Heg1 stabilizes levels of Krit1 protein, and both Heg1 and Krit1 dampen expression levels of klf2a, a major mechanosensitive gene. Conversely, loss of Krit1 results in increased expression of klf2a and notch1b throughout the endocardium and prevents cardiac valve leaflet formation. Hence, the correct balance of blood-flow-dependent induction and Krit1 protein mediated repression of klf2a and notch1b ultimately shapes cardiac valve leaflet morphology. Y1 - 2018 U6 - https://doi.org/10.7554/eLife.28939 SN - 2050-084X VL - 7 PB - eLife Sciences Publications CY - Cambridge ER - TY - JOUR A1 - Taron, Ulrike H. A1 - Lell, Moritz A1 - Barlow, Axel A1 - Paijmans, Johanna L. A. T1 - Testing of Alignment Parameters for Ancient Samples BT - Evaluating and Optimizing Mapping Parameters for Ancient Samples Using the TAPAS Tool JF - Genese N2 - High-throughput sequence data retrieved from ancient or other degraded samples has led to unprecedented insights into the evolutionary history of many species, but the analysis of such sequences also poses specific computational challenges. The most commonly used approach involves mapping sequence reads to a reference genome. However, this process becomes increasingly challenging with an elevated genetic distance between target and reference or with the presence of contaminant sequences with high sequence similarity to the target species. The evaluation and testing of mapping efficiency and stringency are thus paramount for the reliable identification and analysis of ancient sequences. In this paper, we present ‘TAPAS’, (Testing of Alignment Parameters for Ancient Samples), a computational tool that enables the systematic testing of mapping tools for ancient data by simulating sequence data reflecting the properties of an ancient dataset and performing test runs using the mapping software and parameter settings of interest. We showcase TAPAS by using it to assess and improve mapping strategy for a degraded sample from a banded linsang (Prionodon linsang), for which no closely related reference is currently available. This enables a 1.8-fold increase of the number of mapped reads without sacrificing mapping specificity. The increase of mapped reads effectively reduces the need for additional sequencing, thus making more economical use of time, resources, and sample material. KW - ancient DNA KW - short-read mapping KW - palaeogenomics KW - paleogenomics KW - alignment sensitivity/specificity Y1 - 2018 U6 - https://doi.org/10.3390/genes9030157 SN - 2073-4425 VL - 9 IS - 3 PB - MDPI CY - Basel ER - TY - JOUR A1 - Martin-Creuzburg, Dominik A1 - Massier, Tamara A1 - Wacker, Alexander T1 - Sex-Specific differences in essential lipid requirements of Daphnia magna JF - Frontiers in Ecology and Evolution N2 - Sex-specific differences in nutritional requirements may crucially influence the performances of the sexes, which may have implications for sexual reproduction and thus is of great ecological and evolutionary interest. In the freshwater model species Daphnia magna, essential lipid requirements have been extensively studied. Dietary deficiencies in sterols and polyunsaturated fatty acids (PUFA) have been shown to constrain somatic growth and parthenogenetic reproduction of female Daphnia. In contrast, nutrient requirements of male Daphnia have not been studied yet. Supplementation experiments were conducted to investigate differences in sterol (cholesterol) and PUFA (eicosapentaenoic acid, EPA) requirements between female and male D. magna. Thresholds for sterol-limited juvenile growth were higher in females than in males, suggesting that females are more susceptible to dietary sterol deficiencies than males. Sex-specific differences in maximum somatic growth rates were evident primarily in the presence of dietary EPA; females could not exploit their generally higher growth potential in the absence of dietary PUFA. However, the thresholds for EPA-limited growth did not differ between sexes, suggesting that both sexes have similar dietary EPA requirements during juvenile growth. During a life history experiment, the gain in body dry mass was higher in females than in males, irrespective of food treatment. In both sexes, the gain in body dry mass increased significantly upon EPA supplementation, indicating that both sexes benefited from dietary EPA supply also later in life. However, the positive effects of EPA supplementation were most pronounced for female reproduction-related traits (i.e., clutch sizes, egg dry masses, and total dry mass investment in reproduction). The high maternal investment in reproduction resulted in a depletion of nutrients in female somata. In contrast, the comparatively low paternal investment in reproduction allowed for the accumulation of nutrients in male somata. We conclude that males are generally less susceptible to dietary nutrient deficiencies than females, because they can rely more on internal body stores. Our data suggest that the performances of the sexes are differentially influenced by lipid-mediated food quality, which may have consequences for sexual reproduction and thus the production of resting eggs and the maintenance of Daphnia populations. KW - allocation KW - cholesterol KW - eicosapentaenoic acid KW - food quality KW - male Daphnia KW - polyunsaturated fatty acids KW - sterols KW - lipid limitation thresholds Y1 - 2018 U6 - https://doi.org/10.3389/fevo.2018.00089 SN - 2296-701X VL - 6 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Zurell, Damaris A1 - von Wehrden, Henrik A1 - Rotics, Shay A1 - Kaatz, Michael A1 - Gross, Helge A1 - Schlag, Lena A1 - Schäfer, Merlin A1 - Sapir, Nir A1 - Turjeman, Sondra A1 - Wikelski, Martin A1 - Nathan, Ran A1 - Jeltsch, Florian T1 - Home range size and resource use of breeding and non-breeding white storks along a land use gradient JF - Frontiers in Ecology and Evolution N2 - Biotelemetry is increasingly used to study animal movement at high spatial and temporal resolution and guide conservation and resource management. Yet, limited sample sizes and variation in space and habitat use across regions and life stages may compromise robustness of behavioral analyses and subsequent conservation plans. Here, we assessed variation in (i) home range sizes, (ii) home range selection, and (iii) fine-scale resource selection of white storks across breeding status and regions and test model transferability. Three study areas were chosen within the Central German breeding grounds ranging from agricultural to fluvial and marshland. We monitored GPS-locations of 62 adult white storks equipped with solar-charged GPS/3D-acceleration (ACC) transmitters in 2013-2014. Home range sizes were estimated using minimum convex polygons. Generalized linear mixed models were used to assess home range selection and fine-scale resource selection by relating the home ranges and foraging sites to Corine habitat variables and normalized difference vegetation index in a presence/pseudo-absence design. We found strong variation in home range sizes across breeding stages with significantly larger home ranges in non-breeding compared to breeding white storks, but no variation between regions. Home range selection models had high explanatory power and well predicted overall density of Central German white stork breeding pairs. Also, they showed good transferability across regions and breeding status although variable importance varied considerably. Fine-scale resource selection models showed low explanatory power. Resource preferences differed both across breeding status and across regions, and model transferability was poor. Our results indicate that habitat selection of wild animals may vary considerably within and between populations, and is highly scale dependent. Thereby, home range scale analyses show higher robustness whereas fine-scale resource selection is not easily predictable and not transferable across life stages and regions. Such variation may compromise management decisions when based on data of limited sample size or limited regional coverage. We thus recommend home range scale analyses and sampling designs that cover diverse regional landscapes and ensure robust estimates of habitat suitability to conserve wild animal populations. KW - 3D-acceleration sensor KW - biotelemetry KW - Ciconia ciconia KW - home range selection KW - resource selection Y1 - 2018 U6 - https://doi.org/10.3389/fevo.2018.00079 SN - 2296-701X VL - 6 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Ramage, Justine Lucille A1 - Irrgang, Anna Maria A1 - Morgenstern, Anne A1 - Lantuit, Hugues T1 - Increasing coastal slump activity impacts the release of sediment and organic carbon into the Arctic Ocean JF - Biogeosciences N2 - Retrogressive thaw slumps (RTSs) are among the most active thermokarst landforms in the Arctic and deliver a large amount of material to the Arctic Ocean. However, their contribution to the organic carbon (OC) budget is unknown. We provide the first estimate of the contribution of RTSs to the nearshore OC budget of the Yukon Coast, Canada, and describe the evolution of coastal RTSs between 1952 and 2011 in this area. We (1) describe the evolution of RTSs between 1952 and 2011; (2) calculate the volume of eroded material and stocks of OC mobilized through slumping, including soil organic carbon (SOC) and dissolved organic carbon (DOC); and (3) estimate the OC fluxes mobilized through slumping between 1972 and 2011. We identified RTSs using high- resolution satellite imagery from 2011 and geocoded aerial photographs from 1952 and 1972. To estimate the volume of eroded material, we applied spline interpolation on an airborne lidar dataset acquired in July 2013. We inferred the stocks of mobilized SOC and DOC from existing related literature. Our results show a 73% increase in the number of RTSs and 14% areal expansion between 1952 and 2011. In the study area, RTSs displaced at least 16.6 x 10(6) m(3) of material, 53% of which was ice, and mobilized 145.9 x 10(6) kg of OC. Between 1972 and 2011, 49 RTSs displaced 8.6 x 10(3) m(3) yr(-1) of material, adding 0.6% to the OC flux released by coastal retreat along the Yukon Coast. Our results show that the contribution of RTSs to the nearshore OC budget is non-negligible and should be included when estimating the quantity of OC released from the Arctic coast to the ocean. Y1 - 2018 U6 - https://doi.org/10.5194/bg-15-1483-2018 SN - 1726-4170 SN - 1726-4189 VL - 15 IS - 5 SP - 1483 EP - 1495 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Di Baldassarre, Giuliano A1 - Kreibich, Heidi A1 - Vorogushyn, Sergiy A1 - Aerts, Jeroen A1 - Arnbjerg-Nielsen, Karsten A1 - Barendrecht, Marlies A1 - Bates, Paul A1 - Borga, Marco A1 - Botzen, Wouter A1 - Bubeck, Philip A1 - De Marchi, Bruna A1 - Llasat, Carmen Maria A1 - Mazzoleni, Maurizio A1 - Molinari, Daniela A1 - Mondino, Elena A1 - Mard, Johanna A1 - Petrucci, Olga A1 - Scolobig, Anna A1 - Viglione, Alberto A1 - Ward, Philip J. T1 - Hess Opinions: An interdisciplinary research agenda to explore the unintended consequences of structural flood protection JF - Hydrology and earth system sciences : HESS N2 - One common approach to cope with floods is the implementation of structural flood protection measures, such as levees or flood-control reservoirs, which substantially reduce the probability of flooding at the time of implementation. Numerous scholars have problematized this approach. They have shown that increasing the levels of flood protection can attract more settlements and high-value assets in the areas protected by the new measures. Other studies have explored how structural measures can generate a sense of complacency, which can act to reduce preparedness. These paradoxical risk changes have been described as "levee effect", "safe development paradox" or "safety dilemma". In this commentary, we briefly review this phenomenon by critically analysing the intended benefits and unintended effects of structural flood protection, and then we propose an interdisciplinary research agenda to uncover these paradoxical dynamics of risk. Y1 - 2018 U6 - https://doi.org/10.5194/hess-22-5629-2018 SN - 1027-5606 SN - 1607-7938 VL - 22 IS - 11 SP - 5629 EP - 5637 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Zimmermann, Marc A1 - Grigoriev, Dmitry A1 - Puretskiy, Nikolay A1 - Böker, Alexander T1 - Characteristics of microcontact printing with polyelectrolyte ink for the precise preparation of patches on silica particles JF - RSC Advances N2 - This publication demonstrates the abilities of a precise and straightforward microcontact printing approach for the preparation of patchy silica particles. In a broad particle size range, it is possible to finely tune the number and parameters of three-dimensional patches like diameter and thickness using only polyethyleneimine ink, poly(dimethoxysilane) as stamp material and a suitable release solvent. Y1 - 2018 U6 - https://doi.org/10.1039/c8ra07955b SN - 2046-2069 VL - 8 IS - 69 SP - 39241 EP - 39247 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Bouchoule, Isabelle A1 - Schemmer, Max A1 - Henkel, Carsten T1 - Cooling phonon modes of a Bose condensate with uniform few body losses JF - Scipost Physics N2 - We present a general analysis of the cooling produced by losses on condensates or quasi-condensates. We study how the occupations of the collective phonon modes evolve in time, assuming that the loss process is slow enough so that each mode adiabatically follows the decrease of the mean density. The theory is valid for any loss process whose rate is proportional to the jth power of the density, but otherwise spatially uniform. We cover both homogeneous gases and systems confined in a smooth potential. For a low-dimensional gas, we can take into account the modified equation of state due to the broadening of the cloud width along the tightly confined directions, which occurs for large interactions. We find that at large times, the temperature decreases proportionally to the energy scale mc(2), where m is the mass of the particles and c the sound velocity. We compute the asymptotic ratio of these two quantities for different limiting cases: a homogeneous gas in any dimension and a one-dimensional gas in a harmonic trap. Y1 - 2018 U6 - https://doi.org/10.21468/SciPostPhys.5.5.043 SN - 2542-4653 VL - 5 IS - 5 PB - Scipost foundation CY - Amsterdam ER - TY - JOUR A1 - Kluge, Annette A1 - Gronau, Norbert T1 - Intentional forgetting in organizations BT - the Importance of Eliminating Retrieval Cues for Implementing New Routines JF - Frontiers in psychology N2 - To cope with the already large, and ever increasing, amount of information stored in organizational memory, "forgetting," as an important human memory process, might be transferred to the organizational context. Especially in intentionally planned change processes (e.g., change management), forgetting is an important precondition to impede the recall of obsolete routines and adapt to new strategic objectives accompanied by new organizational routines. We first comprehensively review the literature on the need for organizational forgetting and particularly on accidental vs. intentional forgetting. We discuss the current state of the art of theory and empirical evidence on forgetting from cognitive psychology in order to infer mechanisms applicable to the organizational context. In this respect, we emphasize retrieval theories and the relevance of retrieval cues important for forgetting. Subsequently, we transfer the empirical evidence that the elimination of retrieval cues leads to faster forgetting to the forgetting of organizational routines, as routines are part of organizational memory. We then propose a classification of cues (context, sensory, business process-related cues) that are relevant in the forgetting of routines, and discuss a meta-cue called the "situational strength" cue, which is relevant if cues of an old and a new routine are present simultaneously. Based on the classification as business process-related cues (information, team, task, object cues), we propose mechanisms to accelerate forgetting by eliminating specific cues based on the empirical and theoretical state of the art. We conclude that in intentional organizational change processes, the elimination of cues to accelerate forgetting should be used in change management practices. KW - change management KW - multi-actor routines KW - business processes KW - knowledge management KW - organizational memory KW - situational strength Y1 - 2018 U6 - https://doi.org/10.3389/fpsyg.2018.00051 SN - 1664-1078 VL - 9 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Kretschmer, Marlene A1 - Cohen, Judah A1 - Matthias, Vivien A1 - Runge, Jakob A1 - Coumou, Dim T1 - The different stratospheric influence on cold-extremes in Eurasia and North America JF - npj Climate and Atmospheric Science N2 - The stratospheric polar vortex can influence the tropospheric circulation and thereby winter weather in the mid-latitudes. Weak vortex states, often associated with sudden stratospheric warmings (SSW), have been shown to increase the risk of cold-spells especially over Eurasia, but its role for North American winters is less clear. Using cluster analysis, we show that there are two dominant patterns of increased polar cap heights in the lower stratosphere. Both patterns represent a weak polar vortex but they are associated with different wave mechanisms and different regional tropospheric impacts. The first pattern is zonally symmetric and associated with absorbed upward-propagating wave activity, leading to a negative phase of the North Atlantic Oscillation (NAO) and cold-air outbreaks over northern Eurasia. This coupling mechanism is well-documented in the literature and is consistent with the downward migration of the northern annular mode (NAM). The second pattern is zonally asymmetric and linked to downward reflected planetary waves over Canada followed by a negative phase of the Western Pacific Oscillation (WPO) and cold-spells in Central Canada and the Great Lakes region. Causal effect network (CEN) analyses confirm the atmospheric pathways associated with this asymmetric pattern. Moreover, our findings suggest the reflective mechanism to be sensitive to the exact region of upward wave-activity fluxes and to be state-dependent on the strength of the vortex. Identifying the causal pathways that operate on weekly to monthly timescales can pave the way for improved sub-seasonal to seasonal forecasting of cold spells in the mid-latitudes. Y1 - 2018 U6 - https://doi.org/10.1038/s41612-018-0054-4 SN - 2397-3722 VL - 1 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Omidbakhshfard, Mohammad Amin A1 - Fujikura, Ushio A1 - Olas, Justyna Jadwiga A1 - Xue, Gang-Ping A1 - Balazadeh, Salma A1 - Mueller-Roeber, Bernd T1 - GROWTH-REGULATING FACTOR 9 negatively regulates arabidopsis leaf growth by controlling ORG3 and restricting cell proliferation in leaf primordia JF - PLoS Genetics : a peer-reviewed, open-access journal N2 - Leaf growth is a complex process that involves the action of diverse transcription factors (TFs) and their downstream gene regulatory networks. In this study, we focus on the functional characterization of the Arabidopsis thaliana TF GROWTH-REGULATING FACTOR9 (GRF9) and demonstrate that it exerts its negative effect on leaf growth by activating expression of the bZIP TF OBP3-RESPONSIVE GENE 3 (ORG3). While grf9 knockout mutants produce bigger incipient leaf primordia at the shoot apex, rosette leaves and petals than the wild type, the sizes of those organs are reduced in plants overexpressing GRF9 (GRF9ox). Cell measurements demonstrate that changes in leaf size result from alterations in cell numbers rather than cell sizes. Kinematic analysis and 5-ethynyl-2'-deoxyuridine (EdU) incorporation assay revealed that GRF9 restricts cell proliferation in the early developing leaf. Performing in vitro binding site selection, we identified the 6-base motif 5'-CTGACA-3' as the core binding site of GRF9. By global transcriptome profiling, electrophoretic mobility shift assay (EMSA) and chromatin immunoprecipitation (ChIP) we identified ORG3 as a direct downstream, and positively regulated target of GRF9. Genetic analysis of grf9 org3 and GRF9ox org3 double mutants reveals that both transcription factors act in a regulatory cascade to control the final leaf dimensions by restricting cell number in the developing leaf. Y1 - 2018 U6 - https://doi.org/10.1371/journal.pgen.1007484 SN - 1553-7404 VL - 14 IS - 7 PB - PLoS CY - San Fransisco ER - TY - JOUR A1 - Kubin, Markus A1 - Guo, Meiyuan A1 - Kroll, Thomas A1 - Loechel, Heike A1 - Kallman, Erik A1 - Baker, Michael L. A1 - Mitzner, Rolf A1 - Gul, Sheraz A1 - Kern, Jan A1 - Föhlisch, Alexander A1 - Erko, Alexei A1 - Bergmann, Uwe A1 - Yachandra, Vittal A1 - Yano, Junko A1 - Lundberg, Marcus A1 - Wernet, Philippe T1 - Probing the oxidation state of transition metal complexes BT - a case study on how charge and spin densities determine Mn L-edge X-ray absorption energies JF - Chemical science N2 - Transition metals in inorganic systems and metalloproteins can occur in different oxidation states, which makes them ideal redox-active catalysts. To gain a mechanistic understanding of the catalytic reactions, knowledge of the oxidation state of the active metals, ideally in operando, is therefore critical. L-edge X-ray absorption spectroscopy (XAS) is a powerful technique that is frequently used to infer the oxidation state via a distinct blue shift of L-edge absorption energies with increasing oxidation state. A unified description accounting for quantum-chemical notions whereupon oxidation does not occur locally on the metal but on the whole molecule and the basic understanding that L-edge XAS probes the electronic structure locally at the metal has been missing to date. Here we quantify how charge and spin densities change at the metal and throughout the molecule for both redox and core-excitation processes. We explain the origin of the L-edge XAS shift between the high-spin complexes Mn-II(acac)(2) and Mn-III(acac)(3) as representative model systems and use ab initio theory to uncouple effects of oxidation-state changes from geometric effects. The shift reflects an increased electron affinity of Mn-III in the core-excited states compared to the ground state due to a contraction of the Mn 3d shell upon core-excitation with accompanied changes in the classical Coulomb interactions. This new picture quantifies how the metal-centered core hole probes changes in formal oxidation state and encloses and substantiates earlier explanations. The approach is broadly applicable to mechanistic studies of redox-catalytic reactions in molecular systems where charge and spin localization/delocalization determine reaction pathways. Y1 - 2018 U6 - https://doi.org/10.1039/c8sc00550h SN - 2041-6520 SN - 2041-6539 VL - 9 IS - 33 SP - 6813 EP - 6829 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Tan, Li A1 - Liu, Bing A1 - Siemensmeyer, Konrad A1 - Glebe, Ulrich A1 - Böker, Alexander T1 - Synthesis of Polystyrene-Coated Superparamagnetic and Ferromagnetic Cobalt Nanoparticles JF - Polymers N2 - Polystyrene-coated cobalt nanoparticles (NPs) were synthesized through a dual-stage thermolysis of cobalt carbonyl (Co-2(CO)(8)). The amine end-functionalized polystyrene surfactants with varying molecular weight were prepared via atom-transfer radical polymerization technique. By changing the concentration of these polymeric surfactants, Co NPs with different size, size distribution, and magnetic properties were obtained. Transmission electron microscopy characterization showed that the size of Co NPs stabilized with lower molecular weight polystyrene surfactants (M-n = 2300 g/mol) varied from 12-22 nm, while the size of Co NPs coated with polystyrene of middle (M-n = 4500 g/mol) and higher molecular weight (M-n = 10,500 g/mol) showed little change around 20 nm. Magnetic measurements revealed that the small cobalt particles were superparamagnetic, while larger particles were ferromagnetic and self-assembled into 1-D chain structures. Thermogravimetric analysis revealed that the grafting density of polystyrene with lower molecular weight is high. To the best of our knowledge, this is the first study to obtain both superparamagnetic and ferromagnetic Co NPs by changing the molecular weight and concentration of polystyrene through the dual-stage decomposition method. KW - cobalt nanoparticles KW - polystyrene KW - superparamagnetic KW - ferromagnetic KW - molecular weight Y1 - 2018 U6 - https://doi.org/10.3390/polym10101053 SN - 2073-4360 VL - 10 IS - 10 PB - MDPI CY - Basel ER - TY - JOUR A1 - Otten, Cecile A1 - Knox, Jessica A1 - Boulday, Gwenola A1 - Eymery, Mathias A1 - Haniszewski, Marta A1 - Neuenschwander, Martin A1 - Radetzki, Silke A1 - Vogt, Ingo A1 - Haehn, Kristina A1 - De Luca, Coralie A1 - Cardoso, Cecile A1 - Hamad, Sabri A1 - Igual Gil, Carla A1 - Roy, Peter A1 - Albiges-Rizo, Corinne A1 - Faurobert, Eva A1 - von Kries, Jens P. A1 - Campillos, Monica A1 - Tournier-Lasserve, Elisabeth A1 - Derry, William Brent A1 - Abdelilah-Seyfried, Salim T1 - Systematic pharmacological screens uncover novel pathways involved in cerebral cavernous malformations JF - EMBO molecular medicine N2 - Cerebral cavernous malformations (CCMs) are vascular lesions in the central nervous system causing strokes and seizures which currently can only be treated through neurosurgery. The disease arises through changes in the regulatory networks of endothelial cells that must be comprehensively understood to develop alternative, non-invasive pharmacological therapies. Here, we present the results of several unbiased small-molecule suppression screens in which we applied a total of 5,268 unique substances to CCM mutant worm, zebrafish, mouse, or human endothelial cells. We used a systems biology-based target prediction tool to integrate the results with the whole-transcriptome profile of zebrafish CCM2 mutants, revealing signaling pathways relevant to the disease and potential targets for small-molecule-based therapies. We found indirubin-3-monoxime to alleviate the lesion burden in murine preclinical models of CCM2 and CCM3 and suppress the loss-of-CCM phenotypes in human endothelial cells. Our multi-organism-based approach reveals new components of the CCM regulatory network and foreshadows novel small-molecule-based therapeutic applications for suppressing this devastating disease in patients. KW - angiogenesis KW - CCM KW - ERK5 KW - indirubin-3-monoxime KW - KLF2 Y1 - 2018 U6 - https://doi.org/10.15252/emmm.201809155 SN - 1757-4676 SN - 1757-4684 VL - 10 IS - 10 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Hlawenka, Peter A1 - Siemensmeyer, Konrad A1 - Weschke, Eugen A1 - Varykhalov, Andrei A1 - Sanchez-Barriga, Jaime A1 - Shitsevalova, Natalya Y. A1 - Dukhnenko, A. V. A1 - Filipov, V. B. A1 - Gabani, Slavomir A1 - Flachbart, Karol A1 - Rader, Oliver A1 - Rienks, Emile D. L. T1 - Samarium hexaboride is a trivial surface conductor JF - Nature Communications N2 - SmB6 is predicted to be the first member of the intersection of topological insulators and Kondo insulators, strongly correlated materials in which the Fermi level lies in the gap of a many-body resonance that forms by hybridization between localized and itinerant states. While robust, surface-only conductivity at low temperature and the observation of surface states at the expected high symmetry points appear to confirm this prediction, we find both surface states at the (100) surface to be topologically trivial. We find the (Gamma) over bar state to appear Rashba split and explain the prominent (X) over bar state by a surface shift of the many-body resonance. We propose that the latter mechanism, which applies to several crystal terminations, can explain the unusual surface conductivity. While additional, as yet unobserved topological surface states cannot be excluded, our results show that a firm connection between the two material classes is still outstanding. Y1 - 2018 U6 - https://doi.org/10.1038/s41467-018-02908-7 SN - 2041-1723 VL - 9 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Hochrein, Lena A1 - Mitchell, Leslie A. A1 - Schulz, Karina A1 - Messerschmidt, Katrin A1 - Müller-Röber, Bernd T1 - L-SCRaMbLE as a tool for light-controlled Cre-mediated recombination in yeast JF - Nature Communications N2 - The synthetic yeast genome constructed by the International Synthetic Yeast Sc2.0 consortium adds thousands of loxPsym recombination sites to all 16 redesigned chromosomes, allowing the shuffling of Sc2.0 chromosome parts by the Cre-loxP recombination system thereby enabling genome evolution experiments. Here, we present L-SCRaMbLE, a lightcontrolled Cre recombinase for use in the yeast Saccharomyces cerevisiae. L-SCRaMbLE allows tight regulation of recombinase activity with up to 179-fold induction upon exposure to red light. The extent of recombination depends on induction time and concentration of the chromophore phycocyanobilin (PCB), which can be easily adjusted. The tool presented here provides improved recombination control over the previously reported estradiol-dependent SCRaMbLE induction system, mediating a larger variety of possible recombination events in SCRaMbLE-ing a reporter plasmid. Thereby, L-SCRaMbLE boosts the potential for further customization and provides a facile application for use in the S. cerevisiae genome reengineering project Sc2.0 or in other recombination-based systems. Y1 - 2018 U6 - https://doi.org/10.1038/s41467-017-02208-6 SN - 2041-1723 VL - 9 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Krüger, Stefanie A1 - Schwarze, Michael A1 - Baumann, Otto A1 - Günter, Christina A1 - Bruns, Michael A1 - Kübel, Christian A1 - Szabo, Dorothee Vinga A1 - Meinusch, Rafael A1 - Bermudez, Veronica de Zea A1 - Taubert, Andreas T1 - Bombyx mori silk/titania/gold hybrid materials for photocatalytic water splitting BT - combining renewable raw materials with clean fuels JF - Beilstein journal of nanotechnology N2 - The synthesis, structure, and photocatalytic water splitting performance of two new titania (TiO2)/gold(Au)/Bombyx mori silk hybrid materials are reported. All materials are monoliths with diameters of up to ca. 4.5 cm. The materials are macroscopically homogeneous and porous with surface areas between 170 and 210 m(2)/g. The diameter of the TiO2 nanoparticles (NPs) - mainly anatase with a minor fraction of brookite - and the Au NPs are on the order of 5 and 7-18 nm, respectively. Addition of poly(ethylene oxide) to the reaction mixture enables pore size tuning, thus providing access to different materials with different photocatalytic activities. Water splitting experiments using a sunlight simulator and a Xe lamp show that the new hybrid materials are effective water splitting catalysts and produce up to 30 mmol of hydrogen per 24 h. Overall the article demonstrates that the combination of a renewable and robust scaffold such as B. mori silk with a photoactive material provides a promising approach to new monolithic photocatalysts that can easily be recycled and show great potential for application in lightweight devices for green fuel production. KW - Bombyx mori silk KW - gold KW - photocatalytic water splitting KW - titania Y1 - 2018 U6 - https://doi.org/10.3762/bjnano.9.21 SN - 2190-4286 VL - 9 SP - 187 EP - 204 PB - Beilstein-Institut zur Förderung der Chemischen Wissenschaften CY - Frankfurt, Main ER - TY - JOUR A1 - Schneider, Matthias A1 - Günter, Christina A1 - Taubert, Andreas T1 - Co-deposition of a hydrogel/calcium phosphate hybrid layer on 3D printed poly(lactic acid) scaffolds via dip coating BT - Towards Automated Biomaterials Fabrication JF - Polymers N2 - The article describes the surface modification of 3D printed poly(lactic acid) (PLA) scaffolds with calcium phosphate (CP)/gelatin and CP/chitosan hybrid coating layers. The presence of gelatin or chitosan significantly enhances CP co-deposition and adhesion of the mineral layer on the PLA scaffolds. The hydrogel/CP coating layers are fairly thick and the mineral is a mixture of brushite, octacalcium phosphate, and hydroxyapatite. Mineral formation is uniform throughout the printed architectures and all steps (printing, hydrogel deposition, and mineralization) are in principle amenable to automatization. Overall, the process reported here therefore has a high application potential for the controlled synthesis of biomimetic coatings on polymeric biomaterials. KW - 3D printing KW - dip-coating KW - poly(lactic acid) KW - PLA KW - calcium phosphate KW - gelatin KW - chitosan KW - hydrogel KW - calcium phosphate hybrid material KW - biomaterials Y1 - 2018 U6 - https://doi.org/10.3390/polym10030275 SN - 2073-4360 VL - 10 IS - 3 PB - MDPI CY - Basel ER - TY - JOUR A1 - Reese, Ronja A1 - Winkelmann, Ricarda A1 - Gudmundsson, Gudmundur Hilmar T1 - Grounding-line flux formula applied as a flux condition in numerical simulations fails for buttressed Antarctic ice streams JF - The Cryosphere : TC ; an interactive open access journal of the European Geosciences Union N2 - Currently, several large-scale ice-flow models impose a condition on ice flux across grounding lines using an analytically motivated parameterisation of grounding-line flux. It has been suggested that employing this analytical expression alleviates the need for highly resolved computational domains around grounding lines of marine ice sheets. While the analytical flux formula is expected to be accurate in an unbuttressed flow-line setting, its validity has hitherto not been assessed for complex and realistic geometries such as those of the Antarctic Ice Sheet. Here the accuracy of this analytical flux formula is tested against an optimised ice flow model that uses a highly resolved computational mesh around the Antarctic grounding lines. We find that when applied to the Antarctic Ice Sheet the analytical expression provides inaccurate estimates of ice fluxes for almost all grounding lines. Furthermore, in many instances direct application of the analytical formula gives rise to unphysical complex-valued ice fluxes. We conclude that grounding lines of the Antarctic Ice Sheet are, in general, too highly buttressed for the analytical parameterisation to be of practical value for the calculation of grounding-line fluxes. Y1 - 2018 U6 - https://doi.org/10.5194/tc-12-3229-2018 SN - 1994-0416 SN - 1994-0424 VL - 12 IS - 10 SP - 3229 EP - 3242 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Lopukhina, Anastasiya A1 - Laurinavichyute, Anna A1 - Lopukhin, Konstantin A1 - Dragoy, Olga V. T1 - The Mental Representation of Polysemy across Word Classes JF - Frontiers in psychology N2 - Experimental studies on polysemy have come to contradictory conclusions on whether words with multiple senses are stored as separate or shared mental representations. The present study examined the semantic relatedness and semantic similarity of literal and non-literal (metonymic and metaphorical) senses of three word classes: nouns, verbs, and adjectives. Two methods were used: a psycholinguistic experiment and a distributional analysis of corpus data. In the experiment, participants were presented with 6-12 short phrases containing a polysemous word in literal, metonymic, or metaphorical senses and were asked to classify them so that phrases with the same perceived sense were grouped together. To investigate the impact of professional background on their decisions, participants were controlled for linguistic vs. non-linguistic education. For nouns and verbs, all participants preferred to group together phrases with literal and metonymic senses, but not any other pairs of senses. For adjectives, two pairs of senses were often grouped together: literal with metonymic, and metonymic with metaphorical. Participants with a linguistic background were more accurate than participants with non-linguistic backgrounds, although both groups shared principal patterns of sense classification. For the distributional analysis of corpus data, we used a semantic vector approach to quantify the similarity of phrases with literal, metonymic, and metaphorical senses in the corpora. We found that phrases with literal and metonymic senses had the highest degree of similarity for the three word classes, and that metonymic and metaphorical senses of adjectives had the highest degree of similarity among all word classes. These findings are in line with the experimental results. Overall, the results suggest that the mental representation of a polysemous word depends on its word class. In nouns and verbs, literal and metonymic senses are stored together, while metaphorical senses are stored separately; in adjectives, metonymic senses significantly overlap with both literal and metaphorical senses. KW - polysemy KW - lexical representation KW - metaphor KW - metonymy KW - semantic vectors KW - word classes Y1 - 2018 U6 - https://doi.org/10.3389/fpsyg.2018.00192 SN - 1664-1078 VL - 9 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Neugart, Susanne A1 - Wiesner-Reinhold, Melanie A1 - Frede, Katja A1 - Jander, Elisabeth A1 - Homann, Thomas A1 - Rawel, Harshadrai Manilal A1 - Schreiner, Monika A1 - Baldermann, Susanne T1 - Effect of Solid Biological Waste Compost on the Metabolite Profile of Brassica rapa ssp chinensis JF - Frontiers in plant science : FPLS N2 - Large quantities of biological waste are generated at various steps within the food production chain and a great utilization potential for this solid biological waste exists apart from the current main usage for the feedstuff sector. It remains unclear how the usage of biological waste as compost modulates plant metabolites. We investigated the effect of biological waste of the processing of coffee, aronia, and hop added to soil on the plant metabolite profile by means of liquid chromatography in pak choi sprouts. Here we demonstrate that the solid biological waste composts induced specific changes in the metabolite profiles and the changes are depending on the type of the organic residues and its concentration in soil. The targeted analysis of selected plant metabolites, associated with health beneficial properties of the Brassicaceae family, revealed increased concentrations of carotenoids (up to 3.2-fold) and decreased amounts of glucosinolates (up to 4.7-fold) as well as phenolic compounds (up to 1.5-fold). KW - metabolite profiling KW - LC/MS KW - pak choi KW - carotenoids KW - phenolic compounds KW - glucosinolates Y1 - 2018 U6 - https://doi.org/10.3389/fpls.2018.00305 SN - 1664-462X VL - 9 PB - Frontiers Media CY - Lausanne ER - TY - JOUR A1 - Odongo, Grace Akinyi A1 - Schlotz, Nina A1 - Baldermann, Susanne A1 - Neugart, Susanne A1 - Huyskens-Keil, Susanne A1 - Ngwene, Benard A1 - Trierweiler, Bernhard A1 - Schreiner, Monika A1 - Lamy, Evelyn T1 - African Nightshade (Solanum scabrum Mill.) BT - Impact of Cultivation and Plant Processing on Its Health Promoting Potential as Determined in a Human Liver Cell Model JF - Nutrients N2 - Plant cultivation and processing may impact nutrient and phytochemical content of vegetables. The present study aimed at determining the influence of cultivation and processing on the health promoting capacity of African nightshade (Solanum scabrum Mill.) leaves, an indigenous vegetable, rich in nutrients and phytochemicals. Anti-genotoxicity against the human liver carcinogen aflatoxin B1 (AFB(1)) as determined by the comet assay and radical oxygen species (ROS) scavenging capacity of ethanolic and aqueous extracts were investigated in human derived liver (HepG2) cells. ROS scavenging activity was assessed using electron paramagnetic spin resonance and quantification of ARE/Nrf2 mediated gene expression. The cultivation was done under different environmental conditions. The processing included fermentation and cooking; postharvest ultraviolet irradiation (UV-C) treatment was also investigated. Overall, S. scabrum extracts showed strong health promoting potential, the highest potential was observed with the fermented extract, which showed a 60% reduction of AFB(1) induced DNA damage and a 38% reduction in FeSO4 induced oxidative stress. The content of total polyphenols, carotenoids and chlorophylls was indeed affected by cultivation and processing. Based on the present in vitro findings consumption of S. scabrum leaves could be further encouraged, preferentially after cooking or fermentation of the plant. KW - aflatoxin B1 KW - African indigenous vegetables KW - anti-genotoxicity KW - anti-oxidant activity KW - cancer chemoprevention KW - Solanaceae Y1 - 2018 U6 - https://doi.org/10.3390/nu10101532 SN - 2072-6643 VL - 10 IS - 10 PB - MDPI CY - Basel ER - TY - JOUR A1 - Pathiraja, Sahani Darschika A1 - Anghileri, Daniela A1 - Burlando, Paolo A1 - Sharma, Ashish A1 - Marshall, Lucy A1 - Moradkhani, Hamid T1 - Time-varying parameter models for catchments with land use change BT - the importance of model structure JF - Hydrology and earth system sciences : HESS N2 - Rapid population and economic growth in Southeast Asia has been accompanied by extensive land use change with consequent impacts on catchment hydrology. Modeling methodologies capable of handling changing land use conditions are therefore becoming ever more important and are receiving increasing attention from hydrologists. A recently developed data-assimilation-based framework that allows model parameters to vary through time in response to signals of change in observations is considered for a medium-sized catchment (2880 km(2)) in northern Vietnam experiencing substantial but gradual land cover change. We investigate the efficacy of the method as well as the importance of the chosen model structure in ensuring the success of a time-varying parameter method. The method was used with two lumped daily conceptual models (HBV and HyMOD) that gave good-quality streamflow predictions during pre-change conditions. Although both time-varying parameter models gave improved streamflow predictions under changed conditions compared to the time-invariant parameter model, persistent biases for low flows were apparent in the HyMOD case. It was found that HyMOD was not suited to representing the modified baseflow conditions, resulting in extreme and unrealistic time-varying parameter estimates. This work shows that the chosen model can be critical for ensuring the time-varying parameter framework successfully models streamflow under changing land cover conditions. It can also be used to determine whether land cover changes (and not just meteorological factors) contribute to the observed hydrologic changes in retrospective studies where the lack of a paired control catchment precludes such an assessment. Y1 - 2018 U6 - https://doi.org/10.5194/hess-22-2903-2018 SN - 1027-5606 SN - 1607-7938 VL - 22 IS - 5 SP - 2903 EP - 2919 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Klopsch, Rebecca A1 - Baldermann, Susanne A1 - Voss, Alexander A1 - Rohn, Sascha A1 - Schreiner, Monika A1 - Neugart, Susanne T1 - Bread enriched with legume microgreens and leaves BT - ontogenetic and baking-driven changes in the profile of secondary plant metabolites JF - Frontiers in chemistry N2 - Flavonoids, carotenoids, and chlorophylls were characterized in microgreens and leaves of pea (Pisum sativum) and lupin (Lupinus angustifolius) as these metabolites change during ontogeny. All metabolites were higher in the leaves for both species. Acylated quercetin and kaempferol sophorotrioses were predominant in pea. Genistein and malonylated chrysoeriol were predominant in lupin. Further, the impact of breadmaking on these metabolites using pea and lupin material of two ontogenetic stages as an added ingredient in wheat-based bread was assessed. In "pea microgreen bread" no decrease of quercetin was found with regard to the non-processed plant material. However kaempferol glycosides showed slight decreases induced by the breadmaking process in "pea microgreen bread" and "pea leaf bread." In "lupin microgreen bread" no decrease of genistein compared to the non-processed plant material was found. Chrysoeriol glycosides showed slight decreases induced by the breadmaking process in "lupin microgreen bread" and "lupin leaf bread." In all breads, carotenoids and chlorophylls were depleted however pheophytin formation was caused. Thus, pea and lupin microgreens and leaves are suitable, natural ingredients for enhancing health-promoting secondary plant metabolites in bread and may even be used to tailor bread for specific consumer health needs. KW - ontogeny KW - microgreen KW - pea KW - lupin KW - flavonoid KW - carotenoid KW - thermal processing of food Y1 - 2018 U6 - https://doi.org/10.3389/fchem.2018.00322 SN - 2296-2646 VL - 6 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Reese, Ronja A1 - Albrecht, Torsten A1 - Mengel, Matthias A1 - Asay-Davis, Xylar A1 - Winkelmann, Ricarda T1 - Antarctic sub-shelf melt rates via PICO JF - The Cryosphere : TC ; an interactive open access journal of the European Geosciences Union N2 - Ocean-induced melting below ice shelves is one of the dominant drivers for mass loss from the Antarctic Ice Sheet at present. An appropriate representation of sub-shelf melt rates is therefore essential for model simulations of marine-based ice sheet evolution. Continental-scale ice sheet models often rely on simple melt-parameterizations, in particular for long-term simulations, when fully coupled ice-ocean interaction becomes computationally too expensive. Such parameterizations can account for the influence of the local depth of the ice-shelf draft or its slope on melting. However, they do not capture the effect of ocean circulation underneath the ice shelf. Here we present the Potsdam Ice-shelf Cavity mOdel (PICO), which simulates the vertical overturning circulation in ice-shelf cavities and thus enables the computation of sub-shelf melt rates consistent with this circulation. PICO is based on an ocean box model that coarsely resolves ice shelf cavities and uses a boundary layer melt formulation. We implement it as a module of the Parallel Ice Sheet Model (PISM) and evaluate its performance under present-day conditions of the Southern Ocean. We identify a set of parameters that yield two-dimensional melt rate fields that qualitatively reproduce the typical pattern of comparably high melting near the grounding line and lower melting or refreezing towards the calving front. PICO captures the wide range of melt rates observed for Antarctic ice shelves, with an average of about 0.1 ma(-1) for cold sub-shelf cavities, for example, underneath Ross or Ronne ice shelves, to 16 ma(-1) for warm cavities such as in the Amundsen Sea region. This makes PICO a computationally feasible and more physical alternative to melt parameterizations purely based on ice draft geometry. Y1 - 2018 U6 - https://doi.org/10.5194/tc-12-1969-2018 SN - 1994-0416 SN - 1994-0424 VL - 12 IS - 6 SP - 1969 EP - 1985 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Nennewitz, Markus A1 - Thiede, Rasmus C. A1 - Bookhagen, Bodo T1 - Fault activity, tectonic segmentation, and deformation pattern of the western Himalaya on Ma timescales inferred from landscape morphology JF - Lithosphere N2 - The location and magnitude of Himalayan tectonic activity has been debated for decades, and several aspects remain unknown. For instance, the spatial distribution of crustal shortening that ultimately sustains Himalayan topography and the activity of major fault zones remain unknown at Ma timescales. In this study, we address the spatial deformation pattern in the data-scarce western Himalaya. We calculated catchment averaged, normalized river-steepness indices of non-glaciated drainage basins with tributary catchment areas between 5 and 200 km(2) (n = 2138). We analyzed the spatial distribution of the relative change of river steepness both along and across strike to gain information about the regional distribution of differential uplift pattern and relate this to the activity of distinctive fault segments. For our study area, we observe a positive correlation of averaged k(sn) values with long-term exhumation rates derived from previously published thermochronologic datasets combined with thermal modeling as well as with millennial timescale denudation rates based on cosmogenic nuclide dating. Our results indicate three tectono-geomorphic segments with distinctive landscape morphology, structural architecture, and fault geometry along the western Himalaya: Garhwal-Sutlej, Chamba, and Kashmir Himalaya (from east to west). Moreover, our data recognize distinctive fault segments showing varying thrust activity along strike of the Main Frontal Thrust, the Main Boundary Thrust, and in the vicinity of the steep topographic transition between the Lesser and Greater Himalaya. In this region, we relate out-of-sequence deformation along major basement thrust ramps, such as the Munsiari Thrust with deformation along a mid-crustal ramp along the basal decollement. We suggest that during the Quaternary, all major fault zones in the Western Himalaya experienced out-of-sequence faulting and have accommodated some portion of crustal shortening. Y1 - 2018 U6 - https://doi.org/10.1130/L681.1 SN - 1941-8264 SN - 1947-4253 VL - 10 IS - 5 SP - 632 EP - 640 PB - American Institute of Physics CY - Boulder ER - TY - JOUR A1 - Jobe, Jessica Ann Thompson A1 - Li, Tao A1 - Bookhagen, Bodo A1 - Chen, Jie A1 - Burbank, Douglas W. T1 - Dating growth strata and basin fill by combining Al-26/Be-10 burial dating and magnetostratigraphy BT - Constraining active deformation in the Pamir-Tian Shan convergence zone, NW China JF - Lithosphere N2 - Cosmogenic burial dating enables dating of coarse-grained, Pliocene-Pleistocene sedimentary units that are typically difficult to date with traditional methods, such as magnetostratigraphy. In the actively deforming western Tarim Basin in NW China, Pliocene-Pleistocene conglomerates were dated at eight sites, integrating Al-26/Be-10 burial dating with previously published magnetostratigraphic sections. These samples were collected from growth strata on the flanks of growing folds and from sedimentary units beneath active faults to place timing constraints on the initiation of deformation of structures within the basin and on shortening rates on active faults. These new basin-fill and growthstrata ages document the late Neogene and Quaternary growth of the Pamir and Tian Shan orogens between >5 and 1 Ma and delineate the eastward propagation of deformation at rates up to 115 km/m.y. and basinward growth of both mountain belts at rates up to 12 km/m.y. Y1 - 2018 U6 - https://doi.org/10.1130/L727.1 SN - 1941-8264 SN - 1947-4253 VL - 10 IS - 6 SP - 806 EP - 828 PB - American Institute of Physics CY - Boulder ER - TY - JOUR A1 - Heim, Wieland A1 - Eccard, Jana A1 - Bairlein, Franz T1 - Migration phenology determines niche use of East Asian buntings (Emberizidae) during stopover JF - Current zoology N2 - Stopover niche utilization of birds during migration has not gained much attention so far, since the majority of the studies focuses on breeding or wintering areas. However, stopover sites are crucial for migratory birds. They are often used by a multitude of species, which could lead to increased competition. In this work, we investigated niche use of 8 migratory and closely related Emberiza bunting species at a stopover site in Far East Russia, situated on the poorly studied East Asian fly-way. We used bird ringing data to evaluate morphological similarity as well as niche overlap on the trophic, spatial, and temporal dimension. Bill morphology was used as a proxy for their trophic niche. We were able to prove that a majority of the species occupies well-defined stopover niches on at least one of the dimensions. Niche breadth and niche overlap differ between spring and autumn season with higher overlap found during spring. Morphological differences are mostly related to overall size and wing pointedness. The temporal dimension is most important for segregation among the studied species. Furthermore, all species seem to exhibit a rather strict and consistent phenological pattern. Their occurrence at the study site is highly correlated with their geographic origin and the length of their migration route. We assume that buntings are able to use available resources opportunistically during stopover, while trying to follow a precise schedule in order to avoid competition and to ensure individual fitness. KW - bird migration KW - Emberiza KW - habitat use KW - non-breeding KW - phenology KW - stopover Y1 - 2018 U6 - https://doi.org/10.1093/cz/zoy016 SN - 1674-5507 SN - 2396-9814 VL - 64 IS - 6 SP - 681 EP - 692 PB - Oxford Univ. Press CY - Oxford ER - TY - JOUR A1 - Halama, Ralf A1 - Glodny, Johannes A1 - Konrad-Schmolke, Matthias A1 - Sudo, Masafumi T1 - Rb-Sr and in situ Ar-40/Ar-39 dating of exhumation-related shearing and fluid-induced recrystallization in the Sesia zone (Western Alps, Italy) JF - Geosphere N2 - The Sesia zone in the Italian Western Alps is a piece of continental crust that has been subducted to eclogite-facies conditions and records a complex metamorphic history. The exact timing of events and the significance of geochronological information are debated due to the interplay of tectonic, metamorphic, and metasomatic processes. Here we present new geochronological data using Rb-Sr internal mineral isochrons and in situ Ar-40/Ar-39 laser ablation data to provide constraints on the relative importance of fluid-mediated mineral replacement reactions and diffusion for the interpretation of radiogenic isotope signatures, and on the use of these isotopic systems for dating metamorphic and variably deformed rocks. Our study focuses on the shear zone at the contact between two major lithological units of the Sesia zone, the eclogitic micaschists and the gneiss minuti. Metasedimentary rocks of the eclogitic micaschists unit contain phengite with step-like zoning in major element chemistry as evidence for petrologic disequilibrium. Distinct Ar-40/Ar-39 spot ages of relict phengite cores and over-printed rims demonstrate the preservation of individual age domains in the crystals. The eclogitic micaschists also show systematic Sr isotope disequilibria among different phengite populations, so that minimum ages of relict assemblage crystallization can be differentiated from the timing of late increments of deformation. The preservation of these disequilibrium features shows the lack of diffusive re-equilibration and underpins that fluid-assisted dissolution and recrystallization reactions are the main factors controlling the isotope record in these subduction-related metamorphic rocks. Blueschist-facies mylonites record deformation along the major shear zone that separates the eclogitic micaschists from the gneiss minuti. Two Rb-Sr isochrones that comprise several white mica fractions and glaucophane constrain the timing of this deformation and accompanying near-complete blueschist-facies re-equilibration of the Rb-Sr system to 60.1 +/- 0.9 Ma and 60.9 +/- 2.1 Ma, respectively. Overlapping ages in eclogitic micaschists of 60.1 +/- 1.1 (Rb-Sr isochron of sheared matrix assemblage), 58.6 +/- 0.8, and 60.9 +/- 0.4 Ma (white mica Ar-40/Ar-39 inverse isochron ages) support the significance of this age and show that fluid-rock interaction and partial re-equilibration occurred as much as several kilometers away from the shear zone. An earlier equilibration during high-pressure conditions in the eclogitic mica schists is recorded in minimum Rb-Sr ages for relict assemblages (77.2 +/- 0.8 and 72.4 +/- 1.1 Ma) and an Ar-40/Ar-39 inverse isochron age of 75.4 +/- 0.8 Ma for white mica cores, again demonstrating that the two isotope systems provide mutually supporting geochronological information. Local reactivation and recrystallization along the shear zone lasted >15 m.y., as late increments of deformation are recorded in a greenschist-facies mylonite by a Rb-Sr isochron age of 46.5 +/- 0.7 Ma. Y1 - 2018 U6 - https://doi.org/10.1130/GES01521.1 SN - 1553-040X VL - 14 IS - 4 SP - 1425 EP - 1450 PB - American Institute of Physics CY - Boulder ER - TY - JOUR A1 - Weng, Wei A1 - Lüdeke, Matthias K. B. A1 - Zemp, Delphine Clara A1 - Lakes, Tobia A1 - Kropp, Jürgen T1 - Aerial and surface rivers BT - downwind impacts on water availability from land use changes in Amazonia JF - Hydrology and earth system sciences : HESS N2 - The abundant evapotranspiration provided by the Amazon forests is an important component of the hydrological cycle, both regionally and globally. Since the last century, deforestation and expanding agricultural activities have been changing the ecosystem and its provision of moisture to the atmosphere. However, it remains uncertain how the ongoing land use change will influence rainfall, runoff, and water availability as findings from previous studies differ. Using moisture tracking experiments based on observational data, we provide a spatially detailed analysis recognizing potential teleconnection between source and sink regions of atmospheric moisture. We apply land use scenarios in upwind moisture sources and quantify the corresponding rainfall and runoff changes in downwind moisture sinks. We find spatially varying responses of water regimes to land use changes, which may explain the diverse results from previous studies. Parts of the Peruvian Amazon and western Bolivia are identified as the sink areas most sensitive to land use change in the Amazon and we highlight the current water stress by Amazonian land use change on these areas in terms of the water availability. Furthermore, we also identify the influential source areas where land use change may considerably reduce a given target sink's water reception (from our example of the Ucayali River basin outlet, rainfall by 5–12 % and runoff by 19–50 % according to scenarios). Sensitive sinks and influential sources are therefore suggested as hotspots for achieving sustainable land–water management. Y1 - 2018 U6 - https://doi.org/10.5194/hess-22-911-2018 SN - 1027-5606 SN - 1607-7938 VL - 22 IS - 1 SP - 911 EP - 927 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Prahl, Boris F. A1 - Boettle, Markus A1 - Costa, Luís Fílípe Carvalho da A1 - Kropp, Jürgen A1 - Rybski, Diego T1 - Damage and protection cost curves for coastal floods within the 600 largest European cities JF - Scientific Data N2 - The economic assessment of the impacts of storm surges and sea-level rise in coastal cities requires high-level information on the damage and protection costs associated with varying flood heights. We provide a systematically and consistently calculated dataset of macroscale damage and protection cost curves for the 600 largest European coastal cities opening the perspective for a wide range of applications. Offering the first comprehensive dataset to include the costs of dike protection, we provide the underpinning information to run comparative assessments of costs and benefits of coastal adaptation. Aggregate cost curves for coastal flooding at the city-level are commonly regarded as by-products of impact assessments and are generally not published as a standalone dataset. Hence, our work also aims at initiating a more critical discussion on the availability and derivation of cost curves. Y1 - 2018 U6 - https://doi.org/10.1038/sdata.2018.34 SN - 2052-4463 VL - 5 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Hoferichter, Frances A1 - Laetsch, Alexander A1 - Lazarides, Rebecca A1 - Raufelder, Diana T1 - The big-fish-little-pond effect on the four facets of academic self-concept JF - Frontiers in psychology N2 - The social context plays a decisive role in the formation of the academic self-concept (ASC) and has been widely studied as the big-fish-little-pond-effect (BFLPE). This effect describes that comparable talented students in high-achieving school settings have a lower ASC compared to equally talented students attending low-achieving settings. Past research has focused on students’ domain-specific ASC, while little is known about the relation of achievement-related classroom compositions and the various facets of ASC. Additionally, BFLPE-research has been critiqued to build its theoretical frame on social comparison theory, without providing sufficient empirical support. To address this gap, we analyzed how the single student’s social, criterial, absolute, and individual ASC relate to class-level achievement of 8th graders. Applying Multilevel Structural Equation Modeling (MLSEM) we found that all facets of ASC were significantly related to average-class achievement, while student’s social ASC revealed the strongest associated. The results reveal explicitly that average-class achievement is strongly related to social comparison processes. KW - big-fish-little-pond-effect KW - social KW - criterial KW - absolute KW - individual academic self-concept (SESSKO) KW - high-ability tracked students Y1 - 2018 U6 - https://doi.org/10.3389/fpsyg.2018.01247 SN - 1664-1078 VL - 9 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Hoang, Hoa T. A1 - Mertens, Monique A1 - Wessig, Pablo A1 - Sellrie, Frank A1 - Schenk, Jörg A. A1 - Kumke, Michael Uwe T1 - Antibody Binding at the Liposome-Water Interface BT - a FRET Investigation toward a Liposome-Based Assay JF - ACS Omega N2 - Different signal amplification strategies to improve the detection sensitivity of immunoassays have been applied which utilize enzymatic reactions, nanomaterials, or liposomes. The latter are very attractive materials for signal amplification because liposomes can be loaded with a large amount of signaling molecules, leading to a high sensitivity. In addition, liposomes can be used as a cell-like "bioscaffold" to directly test recognition schemes aiming at cell-related processes. This study demonstrates an easy and fast approach to link the novel hydrophobic optical probe based on [1,3]dioxolo[4,5-f]-[1,3]benzodioxole (DBD dye mm239) with tunable optical properties to hydrophilic recognition elements (e.g., antibodies) using liposomes for signal amplification and as carrier of the hydrophobic dye. The fluorescence properties of mm239 (e.g., long fluorescence lifetime, large Stokes shift, high photostability, and high quantum yield), its high hydrophobicity for efficient anchoring in liposomes, and a maleimide bioreactive group were applied in a unique combination to build a concept for the coupling of antibodies or other protein markers to liposomes (coupling to membranes can be envisaged). The concept further allowed us to avoid multiple dye labeling of the antibody. Here, anti-TAMRA-antibody (DC7-Ab) was attached to the liposomes. In proof-of-concept, steady-state as well as time-resolved fluorescence measurements (e.g., fluorescence depolarization) in combination with single molecule detection (fluorescence correlation spectroscopy, FCS) were used to analyze the binding interaction between DC7-Ab and liposomes as well as the binding of the antigen rhodamine 6G (R6G) to the antibody. Here, the Forster resonance energy transfer (FRET) between mm239 and R6G was monitored. In addition to ensemble FRET data, single-molecule FRET (PIE-FRET) experiments using pulsed interleaved excitation were used to characterize in detail the binding on a single-molecule level to avoid averaging out effects. KW - energy-transfer KW - immunoassay KW - complexes KW - probes Y1 - 2018 U6 - https://doi.org/10.1021/acsomega.8b03016 SN - 2470-1343 VL - 3 IS - 12 SP - 18109 EP - 18116 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Kasyanenko, Nina A1 - Unksov, Ivan A1 - Bakulev, Vladimir A1 - Santer, Svetlana T1 - DNA interaction with head-to-tail associates of cationic surfactants prevents formation of compact particles JF - Molecules N2 - Cationic azobenzene-containing surfactants are capable of condensing DNA in solution with formation of nanosized particles that can be employed in gene delivery. The ratio of surfactant/DNA concentration and solution ionic strength determines the result of DNA-surfactant interaction: Complexes with a micelle-like surfactant associates on DNA, which induces DNA shrinkage, DNA precipitation or DNA condensation with the emergence of nanosized particles. UV and fluorescence spectroscopy, low gradient viscometry and flow birefringence methods were employed to investigate DNA-surfactant and surfactant-surfactant interaction at different NaCl concentrations, [NaCl]. It was observed that [NaCl] (or the Debye screening radius) determines the surfactant-surfactant interaction in solutions without DNA. Monomers, micelles and non-micellar associates of azobenzene-containing surfactants with head-to-tail orientation of molecules were distinguished due to the features of their absorption spectra. The novel data enabled us to conclude that exactly the type of associates (together with the concentration of components) determines the result of DNA-surfactant interaction. Predomination of head-to-tail associates at 0.01 M < [NaCl] < 0.5 M induces DNA aggregation and in some cases DNA precipitation. High NaCl concentration (higher than 0.8 M) prevents electrostatic attraction of surfactants to DNA phosphates for complex formation. DAPI dye luminescence in solutions with DNA-surfactant complexes shows that surfactant tails overlap the DNA minor groove. The addition of di- and trivalent metal ions before and after the surfactant binding to DNA indicate that the bound surfactant molecules are located on DNA in islets. KW - azobenzene trimethylammonium bromide KW - head-to-tail surfactant associates KW - DNA KW - ionic strength KW - multivalent ions Y1 - 2018 U6 - https://doi.org/10.3390/molecules23071576 SN - 1420-3049 VL - 23 IS - 7 PB - MDPI CY - Basel ER - TY - JOUR A1 - Reichel, Martin A1 - Rhein, Cosima A1 - Hofmann, Lena M. A1 - Monti, Juliana A1 - Japtok, Lukasz A1 - Langgartner, Dominik A1 - Füchsl, Andrea M. A1 - Kleuser, Burkhard A1 - Gulbins, Erich A1 - Hellerbrand, Claus A1 - Reber, Stefan O. A1 - Kornhuber, Johannes T1 - Chronic Psychosocial Stress in Mice Is Associated With Increased Acid Sphingomyelinase Activity in Liver and Serum and With Hepatic C16:0-Ceramide Accumulation JF - Frontiers in Psychiatry N2 - Chronic psychosocial stress adversely affects human morbidity and is a risk factor for inflammatory disorders, liver diseases, obesity, metabolic syndrome, and major depressive disorder (MDD). In recent studies, we found an association of MDD with an increase of acid sphingomyelinase (ASM) activity. Thus, we asked whether chronic psychosocial stress as a detrimental factor contributing to the emergence of MDD would also affect ASM activity and sphingolipid (SL) metabolism. To induce chronic psychosocial stress in male mice we employed the chronic subordinate colony housing (CSC) paradigm and compared them to non-stressed single housed control (SHC) mice. We determined Asm activity in liver and serum, hepatic SL concentrations as well as hepatic mRNA expression of genes involved in SL metabolism. We found that hepatic Asm activity was increased by 28% (P = 0.006) and secretory Asm activity by 47% (P = 0.002) in stressed mice. C16:0-Cer was increased by 40% (P = 0.008). Gene expression analysis further revealed an increased expression of tumor necrosis factor (TNF)-alpha (P = 0.009) and of several genes involved in SL metabolism (Cers5, P = 0.028; Cers6, P = 0.045; Gba, P = 0.049; Gba2, P = 0.030; Ormdl2, P = 0.034; Smpdl3B; P = 0.013). Our data thus provides first evidence that chronic psychosocial stress, at least in mice, induces alterations in SL metabolism, which in turn might be involved in mediating the adverse health effects of chronic psychosocial stress and peripheral changes occurring in mood disorders. KW - chronic psychosocial stress KW - acid sphingomyelinase KW - ceramide KW - sphingolipid metabolism KW - chronic subordinate colony housing (CSC) KW - liver metabolism Y1 - 2018 U6 - https://doi.org/10.3389/fpsyt.2018.00496 SN - 1664-0640 VL - 9 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Farhan, Muhammad A1 - Rudolph, Tobias A1 - Nöchel, Ulrich A1 - Kratz, Karl A1 - Lendlein, Andreas T1 - Extractable Free Polymer Chains Enhance Actuation Performance of Crystallizable Poly(epsilon-caprolactone) Networks and Enable Self-Healing JF - Polymers N2 - Crosslinking of thermoplastics is a versatile method to create crystallizable polymer networks, which are of high interest for shape-memory actuators. Here, crosslinked poly(epsilon-caprolactone) thermosets (cPCLs) were prepared from linear starting material, whereby the amount of extractable polymer was varied. Fractions of 5-60 wt % of non-crosslinked polymer chains, which freely interpenetrate the crosslinked network, were achieved leading to differences in the resulting phase of the bulk material. This can be described as "sponge-like" with open or closed compartments depending on the amount of interpenetrating polymer. The crosslinking density and the average network chain length remained in a similar range for all network structures, while the theoretical accessible volume for reptation of the free polymer content is affected. This feature could influence or introduce new functions into the material created by thermomechanical treatment. The effect of interpenetrating PCL in cPCLs on the reversible actuation was analyzed by cyclic, uniaxial tensile tests. Here, high reversible strains of up to Delta epsilon = 24% showed the enhanced actuation performance of networks with a non-crosslinked PCL content of 30 wt % resulting from the crystal formation in the phase of the non-crosslinked PCL and co-crystallization with network structures. Additional functionalities are reprogrammability and self-healing capabilities for networks with high contents of extractable polymer enabling reusability and providing durable actuator materials. KW - shape-memory polymer actuators KW - soft actuators KW - self-healing KW - poly(epsilon-caprolactone) KW - thermoplastics Y1 - 2018 U6 - https://doi.org/10.3390/polym10030255 SN - 2073-4360 VL - 10 IS - 3 PB - MDPI CY - Basel ER - TY - JOUR A1 - Willner, Sven N. A1 - Levermann, Anders A1 - Zhao, Fang A1 - Frieler, Katja T1 - Adaptation required to preserve future high-end river flood risk at present levels JF - Science Advances N2 - Earth’s surface temperature will continue to rise for another 20 to 30 years even with the strongest carbon emission reduction currently considered. The associated changes in rainfall patterns can result in an increased flood risk worldwide. We compute the required increase in flood protection to keep high-end fluvial flood risk at present levels. The analysis is carried out worldwide for subnational administrative units. Most of the United States, Central Europe, and Northeast and West Africa, as well as large parts of India and Indonesia, require the strongest adaptation effort. More than half of the United States needs to at least double their protection within the next two decades. Thus, the need for adaptation to increased river flood is a global problem affecting industrialized regions as much as developing countries. Y1 - 2018 U6 - https://doi.org/10.1126/sciadv.aao1914 SN - 2375-2548 VL - 4 IS - 1 PB - American Assoc. for the Advancement of Science CY - Washington ER - TY - JOUR A1 - Chaykovska, Lyubov A1 - Heunisch, Fabian A1 - von Einem, Gina A1 - Hocher, Carl-Friedrich A1 - Tsuprykov, Oleg A1 - Pavkovic, Mira A1 - Sandner, Peter A1 - Kretschmer, Axel A1 - Chu, Chang A1 - Elitok, Saban A1 - Stasch, Johannes-Peter A1 - Hocher, Berthold T1 - Urinary cGMP predicts major adverse renal events in patients with mild renal impairment and/or diabetes mellitus before exposure to contrast medium JF - PLoS one N2 - Background The use of iodine-based contrast agents entails the risk of contrast induced nephropathy (CIN). Radiocontrast agents elicit the third most common cause of nephropathy among hospitalized patients, accounting for 11-12% of cases. CIN is connected with clinically significant consequences, including increased morbidity, prolonged hospitalization, increased risk of complications, potential need for dialysis, and increased mortality rate. The number of in hospital examinations using iodine-based contrast media has been significantly increasing over the last decade. In order to protect patients from possible complications of such examinations, new biomarkers are needed that are able to predict a risk of contrast-induced nephropathy. Urinary and plasma cyclic guanosine monophosphate (cGMP) concentrations are influenced by renal function. Urinary cGMP is primarily of renal cellular origin. Therefore, we assessed if urinary cGMP concentration may predict major adverse renal events (MARE) after contrast media exposure during coronary angiography. Methods Urine samples were prospectively collected from non-randomized consecutive patients with either diabetes or preexisting impaired kidney function receiving intra-arterial contrast medium (CM) for emergent or elective coronary angiography at the Charite Campus Mitte, University Hospital Berlin. Urinary cGMP concentration in spot urine was analyzed 24 hours after CM exposure. Patients were followed up over 90 days for occurrence of death, initiation of dialysis, doubling of plasma creatinine concentration or MARE. Results In total, 289 consecutive patients were included into the study. Urine cGMP/creatinine ratio 24 hours before CM exposure expressed as mean +/- SD was predictive for the need of dialysis (no dialysis: 89.77 +/- 92.85 mu M/mM, n = 277; need for dialysis: 140.3 +/- 82.90 mu M/mM, n = 12, p = 0.008), death (no death during follow-up: 90.60 +/- 92.50 mu M/mM, n = 280; death during follow-up: 169.88 +/- 81.52 mu M/mM, n = 9; p = 0.002), and the composite endpoint MARE (no MARE: 86.02 +/- 93.17 mu M/mM, n = 271; MARE: 146.64 +/- 74.68 mu M/mM, n = 18, p<0.001) during the follow-up of 90 days after contrast media application. cGMP/creatinine ratio stayed significantly increased at values exceeding 120 pM/mM in patients who developed MARE, required dialysis or died. Conclusions Urinary cGMP/creatinine ratio >= 120 mu M/mM before CM exposure is a promising biomarker for the need of dialysis and all-cause mortality 90 days after CM exposure in patients with preexisting renal impairment or diabetes. Y1 - 2018 U6 - https://doi.org/10.1371/journal.pone.0195828 SN - 1932-6203 VL - 13 IS - 4 PB - PLoS CY - San Fransisco ER - TY - JOUR A1 - Lu, Yong-Ping A1 - Reichetzeder, Christoph A1 - Prehn, Cornelia A1 - Yin, Liang-Hong A1 - Yun, Chen A1 - Zeng, Shufei A1 - Chu, Chang A1 - Adamski, Jerzy A1 - Hocher, Berthold T1 - Cord blood Lysophosphatidylcholine 16:1 is positively associated with birth weight JF - Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry and pharmacology N2 - Background/Aims: Impaired birth outcomes, like low birth weight, have consistently been associated with increased disease susceptibility to hypertension in later life. Alterations in the maternal or fetal metabolism might impact on fetal growth and influence birth outcomes. Discerning associations between the maternal and fetal metabolome and surrogate parameters of fetal growth could give new insight into the complex relationship between intrauterine conditions, birth outcomes, and later life disease susceptibility. Methods: Using flow injection tandem mass spectrometry, targeted metabolomics was performed in serum samples obtained from 226 mother/child pairs at delivery. Associations between neonatal birth weight and concentrations of 163 maternal and fetal metabolites were analyzed. Results: After FDR adjustment using the Benjamini-Hochberg procedure lysophosphatidylcholines (LPC) 14:0, 16:1, and 18:1 were strongly positively correlated with birth weight. In a stepwise linear regression model corrected for established confounding factors of birth weight, LPC 16: 1 showed the strongest independent association with birth weight (CI: 93.63 - 168.94; P = 6.94x10(-11)). The association with birth weight was stronger than classical confounding factors such as offspring sex (CI: - 258.81- -61.32; P = 0.002) and maternal smoking during pregnancy (CI: -298.74 - -29.51; P = 0.017). Conclusions: After correction for multiple testing and adjustment for potential confounders, LPC 16:1 showed a very strong and independent association with birth weight. The underlying molecular mechanisms linking fetal LPCs with birth weight need to be addressed in future studies. (c) 2018 The Author(s) Published by S. Karger AG, Basel KW - Metabolomics KW - Lysophosphatidylcholine KW - Birth Weight KW - DOHaD KW - Hypertension KW - Type 2 Diabetes Y1 - 2018 U6 - https://doi.org/10.1159/000487118 SN - 1015-8987 SN - 1421-9778 VL - 45 IS - 2 SP - 614 EP - 624 PB - Karger CY - Basel ER - TY - JOUR A1 - Wang, Guang A1 - Li, Pei-zhi A1 - Zhang, Shi-yao A1 - Zhong, Shan A1 - Chu, Chang A1 - Zeng, Shufei A1 - Yan, Yu A1 - Cheng, Xin A1 - Chuai, Manli A1 - Hocher, Berthold A1 - Yang, Xuesong T1 - Lipopolysaccharides (LPS) Induced Angiogenesis During Chicken Embryogenesis is Abolished by Combined ETA/ETB Receptor Blockade JF - Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry and pharmacology N2 - Background/Aims: Angiogenesis plays a key role during embryonic development. The vascular endothelin (ET) system is involved in the regulation of angiogenesis. Lipopolysaccharides (LPS) could induce angiogenesis. The effects of ET blockers on baseline and LPS-stimulated angiogenesis during embryonic development remain unknown so far. Methods: The blood vessel density (BVD) of chorioallantoic membranes (CAMs), which were treated with saline (control), LPS, and/or BQ123 and the ETB blocker BQ788, were quantified and analyzed using an IPP 6.0 image analysis program. Moreover, the expressions of ET-1, ET-2, ET3, ET receptor A (ETRA), ET receptor B (ETRB) and VEGFR2 mRNA during embryogenesis were analyzed by semi-quantitative RT-PCR. Results: All components of the ET system are detectable during chicken embryogenesis. LPS increased angiogenesis substantially. This process was completely blocked by the treatment of a combination of the ETA receptor blockers-BQ123 and the ETB receptor blocker BQ788. This effect was accompanied by a decrease in ETRA, ETRB, and VEGFR2 gene expression. However, the baseline angiogenesis was not affected by combined ETA/ETB receptor blockade. Conclusion: During chicken embryogenesis, the LPS-stimulated angiogenesis, but not baseline angiogenesis, is sensitive to combined ETA/ETB receptor blockade. KW - Lipopolysaccharides (LPS) KW - Angiogenesis KW - Chicken chorioallantoic membrane (CAM) KW - Endothelin (ET) Y1 - 2018 U6 - https://doi.org/10.1159/000492547 SN - 1015-8987 SN - 1421-9778 VL - 48 IS - 5 SP - 2084 EP - 2090 PB - Karger CY - Basel ER - TY - JOUR A1 - Seyrich, Maximilian A1 - Alirezaeizanjani, Zahra A1 - Beta, Carsten A1 - Stark, Holger T1 - Statistical parameter inference of bacterial swimming strategies JF - New journal of physics : the open-access journal for physics N2 - We provide a detailed stochastic description of the swimming motion of an E. coli bacterium in two dimension, where we resolve tumble events in time. For this purpose, we set up two Langevin equations for the orientation angle and speed dynamics. Calculating moments, distribution and autocorrelation functions from both Langevin equations and matching them to the same quantities determined from data recorded in experiments, we infer the swimming parameters of E. coli. They are the tumble rate lambda, the tumble time r(-1), the swimming speed v(0), the strength of speed fluctuations sigma, the relative height of speed jumps eta, the thermal value for the rotational diffusion coefficient D-0, and the enhanced rotational diffusivity during tumbling D-T. Conditioning the observables on the swimming direction relative to the gradient of a chemoattractant, we infer the chemotaxis strategies of E. coli. We confirm the classical strategy of a lower tumble rate for swimming up the gradient but also a smaller mean tumble angle (angle bias). The latter is realized by shorter tumbles as well as a slower diffusive reorientation. We also find that speed fluctuations are increased by about 30% when swimming up the gradient compared to the reversed direction. KW - E.coli KW - run and tumble KW - chemotaxis KW - stochastic processes KW - bacterial swimming strategies KW - parameter inference Y1 - 2018 U6 - https://doi.org/10.1088/1367-2630/aae72c SN - 1367-2630 VL - 20 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Goswami, Bedartha A1 - Boers, Niklas A1 - Rheinwalt, Aljoscha A1 - Marwan, Norbert A1 - Heitzig, Jobst A1 - Breitenbach, Sebastian Franz Martin A1 - Kurths, Jürgen T1 - Abrupt transitions in time series with uncertainties JF - Nature Communications N2 - Identifying abrupt transitions is a key question in various disciplines. Existing transition detection methods, however, do not rigorously account for time series uncertainties, often neglecting them altogether or assuming them to be independent and qualitatively similar. Here, we introduce a novel approach suited to handle uncertainties by representing the time series as a time-ordered sequence of probability density functions. We show how to detect abrupt transitions in such a sequence using the community structure of networks representing probabilities of recurrence. Using our approach, we detect transitions in global stock indices related to well-known periods of politico-economic volatility. We further uncover transitions in the El Niño-Southern Oscillation which coincide with periods of phase locking with the Pacific Decadal Oscillation. Finally, we provide for the first time an ‘uncertainty-aware’ framework which validates the hypothesis that ice-rafting events in the North Atlantic during the Holocene were synchronous with a weakened Asian summer monsoon. Y1 - 2018 U6 - https://doi.org/10.1038/s41467-017-02456-6 SN - 2041-1723 VL - 9 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Bizic-Ionescu, Mina A1 - Ionescu, Danny A1 - Grossart, Hans-Peter T1 - Organic Particles: Heterogeneous Hubs for Microbial Interactions in Aquatic Ecosystems JF - Frontiers in microbiology N2 - The dynamics and activities of microbes colonizing organic particles (hereafter particles) greatly determine the efficiency of the aquatic carbon pump. Current understanding is that particle composition, structure and surface properties, determined mostly by the forming organisms and organic matter, dictate initial microbial colonization and the subsequent rapid succession events taking place as organic matter lability and nutrient content change with microbial degradation. We applied a transcriptomic approach to assess the role of stochastic events on initial microbial colonization of particles. Furthermore, we asked whether gene expression corroborates rapid changes in carbon-quality. Commonly used size fractionated filtration averages thousands of particles of different sizes, sources, and ages. To overcome this drawback, we used replicate samples consisting each of 3–4 particles of identical source and age and further evaluated the consequences of averaging 10–1000s of particles. Using flow-through rolling tanks we conducted long-term experiments at near in situ conditions minimizing the biasing effects of closed incubation approaches often referred to as “the bottle-effect.” In our open flow-through rolling tank system, however, active microbial communities were highly heterogeneous despite an identical particle source, suggesting random initial colonization. Contrasting previous reports using closed incubation systems, expression of carbon utilization genes didn’t change after 1 week of incubation. Consequently, we suggest that in nature, changes in particle-associated community related to carbon availability are much slower (days to weeks) due to constant supply of labile, easily degradable organic matter. Initial, random particle colonization seems to be subsequently altered by multiple organismic interactions shaping microbial community interactions and functional dynamics. Comparative analysis of thousands particles pooled togethers as well as pooled samples suggests that mechanistic studies of microbial dynamics should be done on single particles. The observed microbial heterogeneity and inter-organismic interactions may have important implications for evolution and biogeochemistry in aquatic systems. KW - particle-associated bacteria KW - microbial communities KW - inter- and intra-species interactions KW - antagonism KW - phage KW - transcriptome Y1 - 2018 U6 - https://doi.org/10.3389/fmicb.2018.02569 SN - 1664-302X VL - 9 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Garcia, Sarahi L. A1 - Buck, Moritz A1 - Hamilton, Joshua J. A1 - Wurzbacher, Christian A1 - Grossart, Hans-Peter A1 - McMahon, Katherine D. A1 - Eiler, Alexander T1 - Model communities hint at promiscuous metabolic linkages between ubiquitous free-living freshwater bacteria JF - mSphere N2 - Genome streamlining is frequently observed in free-living aquatic microorganisms and results in physiological dependencies between microorganisms. However, we know little about the specificity of these microbial associations. In order to examine the specificity and extent of these associations, we established mixed cultures from three different freshwater environments and analyzed the cooccurrence of organisms using a metagenomic time series. Free-living microorganisms with streamlined genomes lacking multiple biosynthetic pathways showed no clear recurring pattern in their interaction partners. Free-living freshwater bacteria form promiscuous cooperative associations. This notion contrasts with the well-documented high specificities of interaction partners in host-associated bacteria. Considering all data together, we suggest that highly abundant free-living bacterial lineages are functionally versatile in their interactions despite their distinct streamlining tendencies at the single-cell level. This metabolic versatility facilitates interactions with a variable set of community members. KW - community KW - interactions KW - metagenomics KW - microbial ecology KW - mixed cultures KW - promiscuous Y1 - 2018 U6 - https://doi.org/10.1128/mSphere.00202-18 SN - 2379-5042 VL - 3 IS - 3 PB - American Society for Microbiology CY - Washington ER - TY - JOUR A1 - Balint, Miklos A1 - Marton, Orsolya A1 - Schatz, Marlene A1 - Düring, Rolf-Alexander A1 - Grossart, Hans-Peter T1 - Proper experimental design requires randomization/balancing of molecular ecology experiments JF - Ecology and evolution N2 - Properly designed (randomized and/or balanced) experiments are standard in ecological research. Molecular methods are increasingly used in ecology, but studies generally do not report the detailed design of sample processing in the laboratory. This may strongly influence the interpretability of results if the laboratory procedures do not account for the confounding effects of unexpected laboratory events. We demonstrate this with a simple experiment where unexpected differences in laboratory processing of samples would have biased results if randomization in DNA extraction and PCR steps do not provide safeguards. We emphasize the need for proper experimental design and reporting of the laboratory phase of molecular ecology research to ensure the reliability and interpretability of results. KW - batch effect KW - bias KW - DNA extraction KW - environmental DNA KW - laboratory practice KW - lake community KW - metabarcoding KW - nondemonic intrusions KW - PCR KW - sediment Y1 - 2018 U6 - https://doi.org/10.1002/ece3.3687 SN - 2045-7758 VL - 8 IS - 3 SP - 1786 EP - 1793 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Göritz, Anna A1 - Berger, Stella A. A1 - Gege, Peter A1 - Grossart, Hans-Peter A1 - Nejstgaard, Jens C. A1 - Riedel, Sebastian A1 - Röttgers, Rüdiger A1 - Utschig, Christian T1 - Retrieval of water constituents from hyperspectral in-situ measurements under variable cloud cover BT - a case study at Lake Stechlin (Germany) JF - Remote sensing / Molecular Diversity Preservation International (MDPI) N2 - Remote sensing and field spectroscopy of natural waters is typically performed under clear skies, low wind speeds and low solar zenith angles. Such measurements can also be made, in principle, under clouds and mixed skies using airborne or in-situ measurements; however, variable illumination conditions pose a challenge to data analysis. In the present case study, we evaluated the inversion of hyperspectral in-situ measurements for water constituent retrieval acquired under variable cloud cover. First, we studied the retrieval of Chlorophyll-a (Chl-a) concentration and colored dissolved organic matter (CDOM) absorption from in-water irradiance measurements. Then, we evaluated the errors in the retrievals of the concentration of total suspended matter (TSM), Chl-a and the absorption coefficient of CDOM from above-water reflectance measurements due to highly variable reflections at the water surface. In order to approximate cloud reflections, we extended a recent three-component surface reflectance model for cloudless atmospheres by a constant offset and compared different surface reflectance correction procedures. Our findings suggest that in-water irradiance measurements may be used for the analysis of absorbing compounds even under highly variable weather conditions. The extended surface reflectance model proved to contribute to the analysis of above-water reflectance measurements with respect to Chl-a and TSM. Results indicate the potential of this approach for all-weather monitoring. KW - remote sensing KW - inland water KW - hyperspectral measurements KW - in-situ KW - cloud KW - surface reflection KW - inversion KW - bio-optical modeling Y1 - 2018 U6 - https://doi.org/10.3390/rs10020181 SN - 2072-4292 VL - 10 IS - 2 PB - MDPI CY - Basel ER - TY - GEN A1 - Chen, Pan A1 - Bornhorst, Julia A1 - Neely, M. Diana A1 - Avila, Daiana Silva T1 - Mechanisms and Disease Pathogenesis Underlying Metal-Induced Oxidative Stress T2 - Oxidative Medicine and Cellular Longevity Y1 - 2018 U6 - https://doi.org/10.1155/2018/7612172 SN - 1942-0900 SN - 1942-0994 PB - Hindawi CY - London ER - TY - JOUR A1 - Atsawawaranunt, Kamolphat A1 - Comas-Bru, Laia A1 - Mozhdehi, Sahar Amirnezhad A1 - Deininger, Michael A1 - Harrison, Sandy P. A1 - Baker, Andy A1 - Boyd, Meighan A1 - Kaushal, Nikita A1 - Ahmad, Syed Masood A1 - Brahim, Yassine Ait A1 - Arienzo, Monica A1 - Bajo, Petra A1 - Braun, Kerstin A1 - Burstyn, Yuval A1 - Chawchai, Sakonvan A1 - Duan, Wuhui A1 - Hatvani, Istvan Gabor A1 - Hu, Jun A1 - Kern, Zoltan A1 - Labuhn, Inga A1 - Lachniet, Matthew A1 - Lechleitner, Franziska A. A1 - Lorrey, Andrew A1 - Perez-Mejias, Carlos A1 - Pickering, Robyn A1 - Scroxton, Nick A1 - Atkinson, Tim A1 - Ayalon, Avner A1 - Baldini, James A1 - Bar-Matthews, Miriam A1 - Pablo Bernal, Juan A1 - Breitenbach, Sebastian Franz Martin A1 - Boch, Ronny A1 - Borsato, Andrea A1 - Cai, Yanjun A1 - Carolin, Stacy A1 - Cheng, Hai A1 - Columbu, Andrea A1 - Couchoud, Isabelle A1 - Cruz, Francisco A1 - Demeny, Attila A1 - Dominguez-Villar, David A1 - Dragusin, Virgil A1 - Drysdale, Russell A1 - Ersek, Vasile A1 - Finne, Martin A1 - Fleitmann, Dominik A1 - Fohlmeister, Jens Bernd A1 - Frappier, Amy A1 - Genty, Dominique A1 - Holzkamper, Steffen A1 - Hopley, Philip A1 - Kathayat, Gayatri A1 - Keenan-Jones, Duncan A1 - Koltai, Gabriella A1 - Luetscher, Marc A1 - Li, Ting-Yong A1 - Lone, Mahjoor Ahmad A1 - Markowska, Monika A1 - Mattey, Dave A1 - McDermott, Frank A1 - Moreno, Ana A1 - Moseley, Gina A1 - Nehme, Carole A1 - Novello, Valdir F. A1 - Psomiadis, David A1 - Rehfeld, Kira A1 - Ruan, Jiaoyang A1 - Sekhon, Natasha A1 - Sha, Lijuan A1 - Sholz, Denis A1 - Shopov, Yavor A1 - Smith, Andrew A1 - Strikis, Nicolas A1 - Treble, Pauline A1 - Unal-Imer, Ezgi A1 - Vaks, Anton A1 - Vansteenberge, Stef A1 - Veiga-Pires, Cristina A1 - Voarintsoa, Ny Riavo A1 - Wang, Xianfeng A1 - Wong, Corinne A1 - Wortham, Barbara A1 - Wurtzel, Jennifer A1 - Zong, Baoyun T1 - The SISAL database BT - a global resource to document oxygen and carbon isotope records from speleothems JF - Earth System Science Data N2 - Stable isotope records from speleothems provide information on past climate changes, most particularly information that can be used to reconstruct past changes in precipitation and atmospheric circulation. These records are increasingly being used to provide "out-of-sample" evaluations of isotope-enabled climate models. SISAL (Speleothem Isotope Synthesis and Analysis) is an international working group of the Past Global Changes (PAGES) project. The working group aims to provide a comprehensive compilation of speleothem isotope records for climate reconstruction and model evaluation. The SISAL database contains data for individual speleothems, grouped by cave system. Stable isotopes of oxygen and carbon (delta O-18, delta C-13) measurements are referenced by distance from the top or bottom of the speleothem. Additional tables provide information on dating, including information on the dates used to construct the original age model and sufficient information to assess the quality of each data set and to erect a standardized chronology across different speleothems. The metadata table provides location information, information on the full range of measurements carried out on each speleothem and information on the cave system that is relevant to the interpretation of the records, as well as citations for both publications and archived data. Y1 - 2018 U6 - https://doi.org/10.5194/essd-10-1687-2018 SN - 1866-3508 SN - 1866-3516 VL - 10 IS - 3 SP - 1687 EP - 1713 PB - Copernicus CY - Göttingen ER -