TY - JOUR A1 - Lehr, Christian A1 - Dannowski, Ralf A1 - Kalettka, Thomas A1 - Merz, Christoph A1 - Schröder, Boris A1 - Steidl, Jörg A1 - Lischeid, Gunnar T1 - Detecting dominant changes in irregularly sampled multivariate water quality data sets JF - Hydrology and earth system sciences : HESS N2 - Time series of groundwater and stream water quality often exhibit substantial temporal and spatial variability, whereas typical existing monitoring data sets, e.g. from environmental agencies, are usually characterized by relatively low sampling frequency and irregular sampling in space and/or time. This complicates the differentiation between anthropogenic influence and natural variability as well as the detection of changes in water quality which indicate changes in single drivers. We suggest the new term "dominant changes" for changes in multivariate water quality data which concern (1) multiple variables, (2) multiple sites and (3) long-term patterns and present an exploratory framework for the detection of such dominant changes in data sets with irregular sampling in space and time. Firstly, a non-linear dimension-reduction technique was used to summarize the dominant spatiotemporal dynamics in the multivariate water quality data set in a few components. Those were used to derive hypotheses on the dominant drivers influencing water quality. Secondly, different sampling sites were compared with respect to median component values. Thirdly, time series of the components at single sites were analysed for long-term patterns. We tested the approach with a joint stream water and groundwater data set quality consisting of 1572 samples, each comprising sixteen variables, sampled with a spatially and temporally irregular sampling scheme at 29 sites in northeast Germany from 1998 to 2009. The first four components were interpreted as (1) an agriculturally induced enhancement of the natural background level of solute concentration, (2) a redox sequence from reducing conditions in deep groundwater to post-oxic conditions in shallow groundwater and oxic conditions in stream water, (3) a mixing ratio of deep and shallow groundwater to the streamflow and (4) sporadic events of slurry application in the agricultural practice. Dominant changes were observed for the first two components. The changing intensity of the first component was interpreted as response to the temporal variability of the thickness of the unsaturated zone. A steady increase in the second component at most stream water sites pointed towards progressing depletion of the denitrification capacity of the deep aquifer. Y1 - 2018 U6 - https://doi.org/10.5194/hess-22-4401-2018 SN - 1027-5606 SN - 1607-7938 VL - 22 IS - 8 SP - 4401 EP - 4424 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Krupkova, Olga A1 - Sadowska, Aleksandra A1 - Kameda, Takuya A1 - Hitzl, Wolfgang A1 - Hausmann, Oliver Nic A1 - Klasen, Jürgen A1 - Wuertz-Kozak, Karin T1 - p38 MaPK Facilitates crosstalk Between endoplasmic reticulum stress and IL-6 release in the intervertebral Disc JF - Frontiers in Immunology N2 - Degenerative disc disease is associated with increased expression of pro-inflammatory cytokines in the intervertebral disc (IVD). However, it is not completely clear how inflammation arises in the IVD and which cellular compartments are involved in this process. Recently, the endoplasmic reticulum (ER) has emerged as a possible modulator of inflammation in age-related disorders. In addition, ER stress has been associated with the microenvironment of degenerated IVDs. Therefore, the aim of this study was to analyze the effects of ER stress on inflammatory responses in degenerated human IVDs and associated molecular mechanisms. Gene expression of ER stress marker GRP78 and pro-inflammatory cytokines IL-6, IL-8, IL-1 beta, and TNF-alpha was analyzed in human surgical IVD samples (n = 51, Pfirrmann grade 2-5). The expression of GRP78 positively correlated with the degeneration grade in lumbar IVDs and IL-6, but not with IL-1 beta and TNF-alpha. Another set of human surgical IVD samples (n = 25) was used to prepare primary cell cultures. ER stress inducer thapsigargin (Tg, 100 and 500 nM) activated gene and protein expression of IL-6 and induced phosphorylation of p38 MAPK. Both inhibition of p38 MAPK by SB203580 (10 mu M) and knockdown of ER stress effector CCAAT-enhancer-binding protein homologous protein (CHOP) reduced gene and protein expression of IL-6 in Tg-treated cells. Furthermore, the effects of an inflammatory microenvironment on ER stress were tested. TNF-alpha (5 and 10 ng/mL) did not activate ER stress, while IL-1 beta (5 and 10 ng/mL) activated gene and protein expression of GRP78, but did not influence [Ca2+](i) flux and expression of CHOP, indicating that pro-inflammatory cytokines alone may not induce ER stress in vivo. This study showed that IL-6 release in the IVD can be initiated following ER stress and that ER stress mediates IL-6 release through p38 MAPK and CHOP. Therapeutic targeting of ER stress response may reduce the consequences of the harsh microenvironment in degenerated IVD. KW - intervertebral disc KW - inflammation KW - endoplasmic reticulum stress KW - p38 MAPK KW - CHOP KW - GADD153 KW - GRP78 KW - IL-6 Y1 - 2018 U6 - https://doi.org/10.3389/fimmu.2018.01706 SN - 1664-3224 VL - 9 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Münch, Thomas A1 - Laepple, Thomas T1 - What climate signal is contained in decadal- to centennial-scale isotope variations from Antarctic ice cores? JF - Climate of the past : CP N2 - Ice-core-based records of isotopic composition are a proxy for past temperatures and can thus provide information on polar climate variability over a large range of timescales. However, individual isotope records are affected by a multitude of processes that may mask the true temperature variability. The relative magnitude of climate and non-climate contributions is expected to vary as a function of timescale, and thus it is crucial to determine those temporal scales on which the actual signal dominates the noise. At present, there are no reliable estimates of this timescale dependence of the signal-to-noise ratio (SNR). Here, we present a simple method that applies spectral analyses to stable-isotope data from multiple cores to estimate the SNR, and the signal and noise variability, as a function of timescale. The method builds on separating the contributions from a common signal and from local variations and includes a correction for the effects of diffusion and time uncertainty. We apply our approach to firn-core arrays from Dronning Maud Land (DML) in East Antarctica and from the West Antarctic Ice Sheet (WAIS). For DML and decadal to multi-centennial timescales, we find an increase in the SNR by nearly 1 order of magnitude (similar to 0.2 at decadal and similar to 1.0 at multi-centennial scales). The estimated spectrum of climate variability also shows increasing variability towards longer timescales, contrary to what is traditionally inferred from single records in this region. In contrast, the inferred variability spectrum for WAIS stays close to constant over decadal to centennial timescales, and the results even suggest a decrease in SNR over this range of timescales. We speculate that these differences between DML and WAIS are related to differences in the spatial and temporal scales of the isotope signal, highlighting the potentially more homogeneous atmospheric conditions on the Antarctic Plateau in contrast to the marine-influenced conditions on WAIS. In general, our approach provides a methodological basis for separating local proxy variability from coherent climate variations, which is applicable to a large set of palaeoclimate records. Y1 - 2018 U6 - https://doi.org/10.5194/cp-14-2053-2018 SN - 1814-9324 SN - 1814-9332 VL - 14 IS - 12 SP - 2053 EP - 2070 PB - Copernicus Gesellschaft mbH CY - Göttingen ER - TY - JOUR A1 - Graf, Lukas A1 - Moreno-de-las-Heras, Mariano A1 - Ruiz, Maurici A1 - Calsamiglia, Aleix A1 - García-Comendador, Julián A1 - Fortesa, Josep A1 - López-Tarazón, José A. A1 - Estrany, Joan T1 - Accuracy assessment of digital terrain model dataset sources for hydrogeomorphological modelling in small mediterranean catchments JF - Remote sensing N2 - Digital terrain models (DTMs) are a fundamental source of information in Earth sciences. DTM-based studies, however, can contain remarkable biases if limitations and inaccuracies in these models are disregarded. In this work, four freely available datasets, including Shuttle Radar Topography Mission C-Band Synthetic Aperture Radar (SRTM C-SAR V3 DEM), Advanced Spaceborne Thermal Emission and Reflection Radiometer Global Digital Elevation Map (ASTER GDEM V2), and two nationwide airborne light detection and ranging (LiDAR)-derived DTMs (at 5-m and 1-m spatial resolution, respectively) were analysed in three geomorphologically contrasting, small (3–5 km2) catchments located in Mediterranean landscapes under intensive human influence (Mallorca Island, Spain). Vertical accuracy as well as the influence of each dataset’s characteristics on hydrological and geomorphological modelling applicability were assessed by using ground-truth data, classic geometric and morphometric parameters, and a recently proposed index of sediment connectivity. Overall vertical accuracy—expressed as the root mean squared error (RMSE) and normalised median deviation (NMAD)—revealed the highest accuracy for the 1-m (RMSE = 1.55 m; NMAD = 0.44 m) and 5-m LiDAR DTMs (RMSE = 1.73 m; NMAD = 0.84 m). Vertical accuracy of the SRTM data was lower (RMSE = 6.98 m; NMAD = 5.27 m), but considerably higher than for the ASTER data (RMSE = 16.10 m; NMAD = 11.23 m). All datasets were affected by systematic distortions. Propagation of these errors and coarse horizontal resolution caused negative impacts on flow routing, stream network, and catchment delineation, and to a lower extent, on the distribution of slope values. These limitations should be carefully considered when applying DTMs for catchment hydrogeomorphological modelling. KW - digital terrain models KW - DTM vertical accuracy KW - DTM comparison KW - hydrogeomorphological modelling KW - Mediterranean catchments Y1 - 2018 U6 - https://doi.org/10.3390/rs10122014 SN - 2072-4292 VL - 10 IS - 12 PB - MDPI CY - Basel ER - TY - JOUR A1 - Brune, Sascha A1 - Williams, Simon E. A1 - Müller, R. Dietmar T1 - Oblique rifting: the rule, not the exception JF - Solid earth N2 - Movements of tectonic plates often induce oblique deformation at divergent plate boundaries. This is in striking contrast with traditional conceptual models of rifting and rifted margin formation, which often assume 2-D deformation where the rift velocity is oriented perpendicular to the plate boundary. Here we quantify the validity of this assumption by analysing the kinematics of major continent-scale rift systems in a global plate tectonic reconstruction from the onset of Pangea breakup until the present day. We evaluate rift obliquity by joint examination of relative extension velocity and local rift trend using the script-based plate reconstruction software pyGPlates. Our results show that the global mean rift obliquity since 230 Ma amounts to 34 degrees with a standard deviation of 24 degrees, using the convention that the angle of obliquity is spanned by extension direction and rift trend normal. We find that more than similar to 70 % of all rift segments exceeded an obliquity of 20 degrees demonstrating that oblique rifting should be considered the rule, not the exception. In many cases, rift obliquity and extension velocity increase during rift evolution (e.g. Australia-Antarctica, Gulf of California, South Atlantic, India-Antarctica), which suggests an underlying geodynamic correlation via obliquity-dependent rift strength. Oblique rifting produces 3-D stress and strain fields that cannot be accounted for in simplified 2-D plane strain analysis. We therefore highlight the importance of 3-D approaches in modelling, surveying, and interpretation of most rift segments on Earth where oblique rifting is the dominant mode of deformation. Y1 - 2018 U6 - https://doi.org/10.5194/se-9-1187-2018 SN - 1869-9510 SN - 1869-9529 VL - 9 IS - 5 SP - 1187 EP - 1206 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Randall, Matthew J. A1 - Jüngel, Astrid A1 - Rimann, Markus A1 - Wuertz-Kozak, Karin T1 - Advances in the biofabrication of 3D Skin in vitro BT - healthy and pathological models JF - Frontiers in Bioengineeringand Biotechnology N2 - The relevance for in vitro three-dimensional (3D) tissue culture of skin has been present for almost a century. From using skin biopsies in organ culture, to vascularized organotypic full-thickness reconstructed human skin equivalents, in vitro tissue regeneration of 3D skin has reached a golden era. However, the reconstruction of 3D skin still has room to grow and develop. The need for reproducible methodology, physiological structures and tissue architecture, and perfusable vasculature are only recently becoming a reality, though the addition of more complex structures such as glands and tactile corpuscles require advanced technologies. In this review, we will discuss the current methodology for biofabrication of 3D skin models and highlight the advantages and disadvantages of the existing systems as well as emphasize how new techniques can aid in the production of a truly physiologically relevant skin construct for preclinical innovation. Y1 - 2018 U6 - https://doi.org/10.3389/fbioe.2018.00154 SN - 2296-4185 VL - 6 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Skinner, Christopher J. A1 - Coulthard, Tom J. A1 - Schwanghart, Wolfgang A1 - Van De Wiel, Marco J. A1 - Hancock, Greg T1 - Global sensitivity analysis of parameter uncertainty in landscape evolution models JF - Geoscientific model development : an interactive open access journal of the European Geosciences Union N2 - The evaluation and verification of landscape evolution models (LEMs) has long been limited by a lack of suitable observational data and statistical measures which can fully capture the complexity of landscape changes. This lack of data limits the use of objective function based evaluation prolific in other modelling fields, and restricts the application of sensitivity analyses in the models and the consequent assessment of model uncertainties. To overcome this deficiency, a novel model function approach has been developed, with each model function representing an aspect of model behaviour, which allows for the application of sensitivity analyses. The model function approach is used to assess the relative sensitivity of the CAESAR-Lisflood LEM to a set of model parameters by applying the Morris method sensitivity analysis for two contrasting catchments. The test revealed that the model was most sensitive to the choice of the sediment transport formula for both catchments, and that each parameter influenced model behaviours differently, with model functions relating to internal geomorphic changes responding in a different way to those relating to the sediment yields from the catchment outlet. The model functions proved useful for providing a way of evaluating the sensitivity of LEMs in the absence of data and methods for an objective function approach. Y1 - 2018 U6 - https://doi.org/10.5194/gmd-11-4873-2018 SN - 1991-959X SN - 1991-9603 VL - 11 IS - 12 SP - 4873 EP - 4888 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Coesfeld, Jacqueline A1 - Anderson, Sharolyn J. A1 - Baugh, Kimberly A1 - Elvidge, Christopher D. A1 - Schernthanner, Harald A1 - Kyba, Christopher C. M. T1 - Variation of Individual Location Radiance in VIIRS DNB Monthly Composite Images JF - Remote sensing N2 - With the growing size and use of night light time series from the Visible Infrared Imaging Radiometer Suite Day/Night Band (DNB), it is important to understand the stability of the dataset. All satellites observe differences in pixel values during repeat observations. In the case of night light data, these changes can be due to both environmental effects and changes in light emission. Here we examine the stability of individual locations of particular large scale light sources (e.g., airports and prisons) in the monthly composites of DNB data from April 2012 to September 2017. The radiances for individual pixels of most large light emitters are approximately normally distributed, with a standard deviation of typically 15-20% of the mean. Greenhouses and flares, however, are not stable sources. We observe geospatial autocorrelation in the monthly variations for nearby sites, while the correlation for sites separated by large distances is small. This suggests that local factors contribute most to the variation in the pixel radiances and furthermore that averaging radiances over large areas will reduce the total variation. A better understanding of the causes of temporal variation would improve the sensitivity of DNB to lighting changes. KW - artificial light at night KW - light pollution KW - night lights KW - VIIRS DNB Y1 - 2018 U6 - https://doi.org/10.3390/rs10121964 SN - 2072-4292 VL - 10 IS - 12 PB - MDPI CY - Basel ER - TY - JOUR A1 - Schultze, Christiane A1 - Schmidt, Bernd T1 - Ring-closing-metathesis-based synthesis of annellated coumarins from 8-allylcoumarins JF - Beilstein journal of organic chemistry N2 - 8-Allylcoumarins are conveniently accessible through a microwave-promoted tandem Claisen rearrangement/Wittig olefination/cyclization sequence. They serve as a versatile platform for the annellation of five- to seven-membered rings using ring-closing olefin metathesis (RCM). Furano-, pyrano-, oxepino- and azepinocoumarins were synthesized from the same set of precursors using Ru-catalyzed double bond isomerizations and RCM in a defined order. One class of products, pyrano[2,3-f]chromene-2,8-diones, were inaccessible through direct RCM of an acrylate, but became available from the analogous allyl ether via an assisted tandem catalytic RCM/allylic oxidation sequence. KW - coumarins KW - heterocycles KW - isomerization KW - olefin metathesis KW - ruthenium Y1 - 2018 U6 - https://doi.org/10.3762/bjoc.14.278 SN - 1860-5397 VL - 14 SP - 2991 EP - 2998 PB - Beilstein-Institut zur Förderung der Chemischen Wissenschaften CY - Frankfurt, Main ER - TY - JOUR A1 - Fischer, Martin H. A1 - Shaki, Samuel T1 - Repeating Numbers Reduces Results: Violations of the Identity Axiom in Mental Arithmetic JF - Frontiers in psychology N2 - Even simple mental arithmetic is fraught with cognitive biases. For example, adding repeated numbers (so-called tie problems, e.g., 2 + 2) not only has a speed and accuracy advantage over adding different numbers (e.g., 1 + 3) but may also lead to under-representation of the result relative to a standard value (Charras et al., 2012, 2014). Does the tie advantage merely reflect easier encoding or retrieval compared to non-ties, or also a distorted result representation? To answer this question, 47 healthy adults performed two tasks, both of which indicated under-representation of tie results: In a result-to-position pointing task (Experiment 1) we measured the spatial mapping of numbers and found a left-bias for tie compared to non-tie problems. In a result-to-line-length production task (Experiment 2) we measured the underlying magnitude representation directly and obtained shorter lines for tie-compared to non-tie problems. These observations suggest that the processing benefit of tie problems comes at the cost of representational reduction of result meaning. This conclusion is discussed in the context of a recent model of arithmetic heuristics and biases. KW - AHAB KW - cognitive bias KW - mental arithmetic KW - numerical cognition KW - operational momentum KW - SNARC KW - tie problems Y1 - 2018 U6 - https://doi.org/10.3389/fpsyg.2018.02453 SN - 1664-1078 VL - 9 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Marrucci, Monica A1 - Zeilinger, Gerold A1 - Ribolini, Adriano A1 - Schwanghart, Wolfgang T1 - Origin of Knickpoints in an Alpine Context Subject to Different Perturbing Factors, Stura Valley, Maritime Alps (North-Western Italy) JF - Geosciences N2 - Natural catchments are likely to show the existence of knickpoints in their river networks. The origin and genesis of the knickpoints can be manifold, considering that the present morphology is the result of the interactions of different factors such as tectonic movements, quaternary glaciations, river captures, variable lithology, and base-level changes. We analyzed the longitudinal profiles of the river channels in the Stura di Demonte Valley (Maritime Alps) to identify the knickpoints of such an alpine setting and to characterize their origins. The distribution and the geometry of stream profiles were used to identify the possible causes of the changes in stream gradients and to define zones with genetically linked knickpoints. Knickpoints are key geomorphological features for reconstructing the evolution of fluvial dissected basins, when the different perturbing factors affecting the ideally graded fluvial system have been detected. This study shows that even in a regionally small area, perturbations of river profiles are caused by multiple factors. Thus, attributing (automatically)-extracted knickpoints solely to one factor, can potentially lead to incomplete interpretations of catchment evolution. KW - knickpoint KW - river longitudinal profile KW - Maritime Alps Y1 - 2018 U6 - https://doi.org/10.3390/geosciences8120443 SN - 2076-3263 VL - 8 IS - 12 PB - MDPI CY - Basel ER - TY - JOUR A1 - Bormann, Helge A1 - de Brito, Mariana Madruga A1 - Charchousi, Despoina A1 - Chatzistratis, Dimitris A1 - David, Amrei A1 - Grosser, Paula Farina A1 - Kebschull, Jenny A1 - Konis, Alexandros A1 - Koutalakis, Paschalis A1 - Korali, Alkistis A1 - Krauzig, Naomi A1 - Meier, Jessica A1 - Meliadou, Varvara A1 - Meinhardt, Markus A1 - Munnelly, Kieran A1 - Stephan, Christiane A1 - de Vos, Leon Frederik A1 - Dietrich, Jörg A1 - Tzoraki, Ourania T1 - Impact of Hydrological Modellers’ Decisions and Attitude on the Performance of a Calibrated Conceptual Catchment Model BT - Results from a ‘Modelling Contest’ JF - Hydrology N2 - In this study, 17 hydrologists with different experience in hydrological modelling applied the same conceptual catchment model (HBV) to a Greek catchment, using identical data and model code. Calibration was performed manually. Subsequently, the modellers were asked for their experience, their calibration strategy, and whether they enjoyed the exercise. The exercise revealed that there is considerable modellers’ uncertainty even among the experienced modellers. It seemed to be equally important whether the modellers followed a good calibration strategy, and whether they enjoyed modelling. The exercise confirmed previous studies about the benefit of model ensembles: Different combinations of the simulation results (median, mean) outperformed the individual model simulations, while filtering the simulations even improved the quality of the model ensembles. Modellers’ experience, decisions, and attitude, therefore, have an impact on the hydrological model application and should be considered as part of hydrological modelling uncertainty. Y1 - 2018 U6 - https://doi.org/10.3390/hydrology5040064 SN - 2306-5338 VL - 5 IS - 4 PB - MDPI CY - Basel ER - TY - JOUR A1 - Puppe, Daniel A1 - Wanner, Manfred A1 - Sommer, Michael T1 - Data on euglyphid testate amoeba densities, corresponding protozoic silicon pools, and selected soil parameters of initial and forested biogeosystems JF - Data in brief N2 - The dataset in the present article provides information on protozoic silicon (Si) pools represented by euglyphid testate amoebae (TA) in soils of initial and forested biogeosystems. Protozoic Si pools were calculated from densities of euglyphid TA shells and corresponding Si contents. The article also includes data on potential annual biosilicification rates of euglyphid TA at the examined sites. Furthermore, data on selected soil parameters (e.g., readily-available Si, soil pH) and site characteristics (e.g., soil groups, climate data) can be found. The data might be interesting for researchers focusing on biological processes in Si cycling in general and euglyphid TA and corresponding protozoic Si pools in particular. KW - Silicon cycling KW - Biogenic silica KW - Terrestrial biogeosystems KW - Biosilicification KW - Euglyphida Y1 - 2018 U6 - https://doi.org/10.1016/j.dib.2018.10.164 SN - 2352-3409 VL - 21 SP - 1697 EP - 1703 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Lu, Yong-Ping A1 - Reichetzeder, Christoph A1 - Prehn, Cornelia A1 - von Websky, Karoline A1 - Slowinski, Torsten A1 - Chen, You-Peng A1 - Yin, Liang-Hong A1 - Kleuser, Burkhard A1 - Yang, Xue-Song A1 - Adamski, Jerzy A1 - Hocher, Berthold T1 - Fetal serum metabolites are independently associated with Gestational diabetes mellitus JF - Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry and pharmacology N2 - Background/Aims: Gestational diabetes (GDM) might be associated with alterations in the metabolomic profile of affected mothers and their offspring. Until now, there is a paucity of studies that investigated both, the maternal and the fetal serum metabolome in the setting of GDM. Mounting evidence suggests that the fetus is not just passively affected by gestational disease but might play an active role in it. Metabolomic studies performed in maternal blood and fetal cord blood could help to better discern distinct fetal from maternal disease interactions. Methods: At the time of birth, serum samples from mothers and newborns (cord blood samples) were collected and screened for 163 metabolites utilizing tandem mass spectrometry. The cohort consisted of 412 mother/child pairs, including 31 cases of maternal GDM. Results: An initial non-adjusted analysis showed that eight metabolites in the maternal blood and 54 metabolites in the cord blood were associated with GDM. After Benjamini-Hochberg (BH) procedure and adjustment for confounding factors for GDM, fetal phosphatidylcholine acyl-alkyl C 32:1 and proline still showed an independent association with GDM. Conclusions: This study found metabolites in cord blood which were associated with GDM, even after adjustment for established risk factors of GDM. To the best of our knowledge, this is the first study demonstrating an independent association between fetal serum metabolites and maternal GDM. Our findings might suggest a potential effect of the fetal metabolome on maternal GDM. (c) 2018 The Author(s) Published by S. Karger AG, Basel KW - Gestational diabetes KW - Metabolomics KW - Phosphatidylcholine acyl-alkyl C 32:1 KW - Proline Y1 - 2018 U6 - https://doi.org/10.1159/000487119 SN - 1015-8987 SN - 1421-9778 VL - 45 IS - 2 SP - 625 EP - 638 PB - Karger CY - Basel ER - TY - JOUR A1 - Lukan, Tjaša A1 - Machens, Fabian A1 - Coll, Anna A1 - Baebler, Špela A1 - Messerschmidt, Katrin A1 - Gruden, Kristina T1 - Plant X-tender BT - an extension of the AssemblX system for the assembly and expression of multigene constructs in plants JF - PLOS ONE N2 - Cloning multiple DNA fragments for delivery of several genes of interest into the plant genome is one of the main technological challenges in plant synthetic biology. Despite several modular assembly methods developed in recent years, the plant biotechnology community has not widely adopted them yet, probably due to the lack of appropriate vectors and software tools. Here we present Plant X-tender, an extension of the highly efficient, scar-free and sequence-independent multigene assembly strategy AssemblX, based on overlap-depended cloning methods and rare-cutting restriction enzymes. Plant X-tender consists of a set of plant expression vectors and the protocols for most efficient cloning into the novel vector set needed for plant expression and thus introduces advantages of AssemblX into plant synthetic biology. The novel vector set covers different backbones and selection markers to allow full design flexibility. We have included ccdB counterselection, thereby allowing the transfer of multigene constructs into the novel vector set in a straightforward and highly efficient way. Vectors are available as empty backbones and are fully flexible regarding the orientation of expression cassettes and addition of linkers between them, if required. We optimised the assembly and subcloning protocol by testing different scar-less assembly approaches: the noncommercial SLiCE and TAR methods and the commercial Gibson assembly and NEBuilder HiFi DNA assembly kits. Plant X-tender was applicable even in combination with low efficient homemade chemically competent or electrocompetent Escherichia coli. We have further validated the developed procedure for plant protein expression by cloning two cassettes into the newly developed vectors and subsequently transferred them to Nicotiana benthamiana in a transient expression setup. Thereby we show that multigene constructs can be delivered into plant cells in a streamlined and highly efficient way. Our results will support faster introduction of synthetic biology into plant science. Y1 - 2018 U6 - https://doi.org/10.1371/journal.pone.0190526 SN - 1932-6203 VL - 13 IS - 1 PB - Public Library of Science CY - San Fransisco ER - TY - GEN A1 - Ayzel, Georgy A1 - Izhitskiy, Alexander ED - Xu, Z Peng T1 - Coupling physically based and data-driven models for assessing freshwater inflow into the Small Aral Sea T2 - Innovative Water Resources Management in a Changing Environment – Understanding and Balancing Interactions between Humankind and Nature N2 - The Aral Sea desiccation and related changes in hydroclimatic conditions on a regional level is a hot topic for past decades. The key problem of scientific research projects devoted to an investigation of modern Aral Sea basin hydrological regime is its discontinuous nature - the only limited amount of papers takes into account the complex runoff formation system entirely. Addressing this challenge we have developed a continuous prediction system for assessing freshwater inflow into the Small Aral Sea based on coupling stack of hydrological and data-driven models. Results show a good prediction skill and approve the possibility to develop a valuable water assessment tool which utilizes the power of classical physically based and modern machine learning models both for territories with complex water management system and strong water-related data scarcity. The source code and data of the proposed system is available on a Github page (https://github.com/SMASHIproject/IWRM2018). Y1 - 2018 U6 - https://doi.org/10.5194/piahs-379-151-2018 SN - 2199-899X VL - 379 SP - 151 EP - 158 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Giulbudagian, Michael A1 - Yealland, Guy A1 - Hönzke, S. A1 - Edlich, A. A1 - Geisendörfer, Birte A1 - Kleuser, Burkhard A1 - Hedtrich, Sarah A1 - Calderon, Marcelo T1 - Breaking the Barrier BT - potent anti-inflammatory activity following efficient topical delivery of etanercept using thermoresponsive nanogels JF - Theranostics N2 - Topical administration permits targeted, sustained delivery of therapeutics to human skin. Delivery to the skin, however, is typically limited to lipophilic molecules with molecular weight of < 500 Da, capable of crossing the stratum corneum. Nevertheless, there are indications protein delivery may be possible in barrier deficient skin, a condition found in several inflammatory skin diseases such as psoriasis, using novel nanocarrier systems. Methods: Water in water thermo-nanoprecipitation; dynamic light scattering; zeta potential measurement; nanoparticle tracking analysis; atomic force microscopy; cryogenic transmission electron microscopy; UV absorption; centrifugal separation membranes; bicinchoninic acid assay; circular dichroism; TNF alpha binding ELISA; inflammatory skin equivalent construction; human skin biopsies; immunohistochemistry; fluorescence microscopy; western blot; monocyte derived Langerhans cells; ELISA Results: Here, we report the novel synthesis of thermoresponsive nanogels (tNG) and the stable encapsulation of the anti-TNFa fusion protein etanercept (ETR) (similar to 150 kDa) without alteration to its structure, as well as temperature triggered release from the tNGs. Novel tNG synthesis without the use of organic solvents was conducted, permitting in situ encapsulation of protein during assembly, something that holds great promise for easy manufacture and storage. Topical application of ETR loaded tNGs to inflammatory skin equivalents or tape striped human skin resulted in efficient ETR delivery throughout the SC and into the viable epidermis that correlated with clear anti-inflammatory effects. Notably, effective ETR delivery depended on temperature triggered release following topical application. Conclusion: Together these results indicate tNGs hold promise as a biocompatible and easy to manufacture vehicle for stable protein encapsulation and topical delivery into barrier-deficient skin. KW - thermoresponsive-nanogel KW - topical KW - anti-inflammatory therapy KW - etanercept KW - skin equivalents Y1 - 2018 U6 - https://doi.org/10.7150/thno.21668 SN - 1838-7640 VL - 8 IS - 2 SP - 450 EP - 463 PB - Ivyspring International Publisher CY - Lake haven ER - TY - JOUR A1 - Blanchard, Gilles A1 - Hoffmann, Marc A1 - Reiss, Markus T1 - Early stopping for statistical inverse problems via truncated SVD estimation JF - Electronic journal of statistics N2 - We consider truncated SVD (or spectral cut-off, projection) estimators for a prototypical statistical inverse problem in dimension D. Since calculating the singular value decomposition (SVD) only for the largest singular values is much less costly than the full SVD, our aim is to select a data-driven truncation level (m) over cap is an element of {1, . . . , D} only based on the knowledge of the first (m) over cap singular values and vectors. We analyse in detail whether sequential early stopping rules of this type can preserve statistical optimality. Information-constrained lower bounds and matching upper bounds for a residual based stopping rule are provided, which give a clear picture in which situation optimal sequential adaptation is feasible. Finally, a hybrid two-step approach is proposed which allows for classical oracle inequalities while considerably reducing numerical complexity. KW - Linear inverse problems KW - truncated SVD KW - spectral cut-off KW - early stopping KW - discrepancy principle KW - adaptive estimation KW - oracle inequalities Y1 - 2018 U6 - https://doi.org/10.1214/18-EJS1482 SN - 1935-7524 VL - 12 IS - 2 SP - 3204 EP - 3231 PB - Institute of Mathematical Statistics CY - Cleveland ER - TY - JOUR A1 - Blanchard, Gilles A1 - Carpentier, Alexandra A1 - Gutzeit, Maurilio T1 - Minimax Euclidean separation rates for testing convex hypotheses in R-d JF - Electronic journal of statistics N2 - We consider composite-composite testing problems for the expectation in the Gaussian sequence model where the null hypothesis corresponds to a closed convex subset C of R-d. We adopt a minimax point of view and our primary objective is to describe the smallest Euclidean distance between the null and alternative hypotheses such that there is a test with small total error probability. In particular, we focus on the dependence of this distance on the dimension d and variance 1/n giving rise to the minimax separation rate. In this paper we discuss lower and upper bounds on this rate for different smooth and non-smooth choices for C. KW - Minimax hypothesis testing KW - Gaussian sequence model KW - nonasymptotic minimax separation rate Y1 - 2018 U6 - https://doi.org/10.1214/18-EJS1472 SN - 1935-7524 VL - 12 IS - 2 SP - 3713 EP - 3735 PB - Institute of Mathematical Statistics CY - Cleveland ER - TY - JOUR A1 - Kolora, Sree Rohit Raj A1 - Weigert, Anne A1 - Saffari, Amin A1 - Kehr, Stephanie A1 - Walter Costa, Maria Beatriz A1 - Spröer, Cathrin A1 - Indrischek, Henrike A1 - Chintalapati, Manjusha A1 - Lohse, Konrad A1 - Doose, Gero A1 - Overmann, Jörg A1 - Bunk, Boyke A1 - Bleidorn, Christoph A1 - Grimm-Seyfarth, Annegret A1 - Henle, Klaus A1 - Nowick, Katja A1 - Faria, Rui A1 - Stadler, Peter F. A1 - Schlegel, Martin T1 - Divergent evolution in the genomes of closely related lacertids, Lacerta viridis and L. bilineata, and implications for speciation JF - GigaScience N2 - Background Lacerta viridis and Lacerta bilineata are sister species of European green lizards (eastern and western clades, respectively) that, until recently, were grouped together as the L. viridis complex. Genetic incompatibilities were observed between lacertid populations through crossing experiments, which led to the delineation of two separate species within the L. viridis complex. The population history of these sister species and processes driving divergence are unknown. We constructed the first high-quality de novo genome assemblies for both L. viridis and L. bilineata through Illumina and PacBio sequencing, with annotation support provided from transcriptome sequencing of several tissues. To estimate gene flow between the two species and identify factors involved in reproductive isolation, we studied their evolutionary history, identified genomic rearrangements, detected signatures of selection on non-coding RNA, and on protein-coding genes. Findings Here we show that gene flow was primarily unidirectional from L. bilineata to L. viridis after their split at least 1.15 million years ago. We detected positive selection of the non-coding repertoire; mutations in transcription factors; accumulation of divergence through inversions; selection on genes involved in neural development, reproduction, and behavior, as well as in ultraviolet-response, possibly driven by sexual selection, whose contribution to reproductive isolation between these lacertid species needs to be further evaluated. Conclusion The combination of short and long sequence reads resulted in one of the most complete lizard genome assemblies. The characterization of a diverse array of genomic features provided valuable insights into the demographic history of divergence among European green lizards, as well as key species differences, some of which are candidates that could have played a role in speciation. In addition, our study generated valuable genomic resources that can be used to address conservation-related issues in lacertids. KW - sister species KW - PacBio and Illumina KW - de novo hybrid assembly KW - transcripts KW - noncoding RNA KW - zinc fingers KW - positive selection KW - UV response KW - inversions KW - gene flow Y1 - 2018 U6 - https://doi.org/10.1093/gigascience/giy160 SN - 2047-217X VL - 8 IS - 2 PB - Oxford Univ. Press CY - Oxford ER - TY - JOUR A1 - Hellwig, Niels A1 - Tatti, Dylan A1 - Sartori, Giacomo A1 - Anschlag, Kerstin A1 - Graefe, Ulfert A1 - Egli, Markus A1 - Gobat, Jean-Michel A1 - Broll, Gabriele T1 - Modeling spatial patterns of humus forms in montane and subalpine forests BT - implications of local variability for upscaling JF - Sustainability N2 - Humus forms are a distinctive morphological indicator of soil organic matter decomposition. The spatial distribution of humus forms depends on environmental factors such as topography, climate and vegetation. In montane and subalpine forests, environmental influences show a high spatial heterogeneity, which is reflected by a high spatial variability of humus forms. This study aims at examining spatial patterns of humus forms and their dependence on the spatial scale in a high mountain forest environment (Val di Sole/Val di Rabbi, Trentino, Italian Alps). On the basis of the distributions of environmental covariates across the study area, we described humus forms at the local scale (six sampling sites), slope scale (60 sampling sites) and landscape scale (30 additional sampling sites). The local variability of humus forms was analyzed with regard to the ground cover type. At the slope and landscape scale, spatial patterns of humus forms were modeled applying random forests and ordinary kriging of the model residuals. The results indicate that the occurrence of the humus form classes Mull, Mullmoder, Moder, Amphi and Eroded Moder generally depends on the topographical position. Local-scale patterns are mostly related to micro-topography (local accumulation and erosion sites) and ground cover, whereas slope-scale patterns are mainly connected with slope exposure and elevation. Patterns at the landscape scale show a rather irregular distribution, as spatial models at this scale do not account for local to slope-scale variations of humus forms. Moreover, models at the slope scale perform distinctly better than at the landscape scale. In conclusion, the results of this study highlight that landscape-scale predictions of humus forms should be accompanied by local- and slope-scale studies in order to enhance the general understanding of humus form patterns. KW - soil organic matter decomposition KW - spatial modeling KW - random forest KW - multi-scale analysis KW - forest soils KW - Italian Alps Y1 - 2018 U6 - https://doi.org/10.3390/su11010048 SN - 2071-1050 VL - 11 IS - 1 PB - MDPI CY - Basel ER - TY - JOUR A1 - Hein, Johannes A1 - Barnickel, Katja T1 - Replication of R-pronouns in German dialects JF - Zeitschrift für Sprachwissenschaft : ZS N2 - A considerable number of German dialects exhibit doubled R-pronouns with pronominal adverbs (dadamit, dadafur, dadagegen). At first sight, this type of in situ replication seems to be completely redundant since its occurrence is independent of R-pronoun extraction/movement. The main purpose of this paper is to account for (i) the difference between dialects with regard to replication of R-pronouns and (ii) why an (apparently redundant) process of replication occurs. Following Muller (2000a), who considers R-pronouns to be a repair phenomenon, we present an analysis in the framework of Optimality Theory. We argue that replication of R-pronouns is a consequence of different rankings of universal requirements like e.g. the Inclusiveness Condition, the Lexical Integrity Hypothesis and Antilocality and that the interaction of these constraints results in the occurrence of replication. KW - R-pronouns KW - Optimality Theory KW - doubling KW - German KW - dialectal variation Y1 - 2018 U6 - https://doi.org/10.1515/zfs-2018-0009 SN - 0721-9067 SN - 1613-3706 VL - 37 IS - 2 SP - 171 EP - 204 PB - De Gruyter Mouton CY - Berlin ER - TY - GEN A1 - Böhne, Sebastian A1 - Kreitz, Christoph T1 - Learning how to prove BT - from the coq proof assistant to textbook style T2 - Electronic proceedings in theoretical computer science N2 - We have developed an alternative approach to teaching computer science students how to prove. First, students are taught how to prove theorems with the Coq proof assistant. In a second, more difficult, step students will transfer their acquired skills to the area of textbook proofs. In this article we present a realisation of the second step. Proofs in Coq have a high degree of formality while textbook proofs have only a medium one. Therefore our key idea is to reduce the degree of formality from the level of Coq to textbook proofs in several small steps. For that purpose we introduce three proof styles between Coq and textbook proofs, called line by line comments, weakened line by line comments, and structure faithful proofs. While this article is mostly conceptional we also report on experiences with putting our approach into practise. Y1 - 2018 U6 - https://doi.org/10.4204/EPTCS.267.1 SN - 2075-2180 IS - 267 SP - 1 EP - 18 PB - Open Publishing Association CY - Sydney ER - TY - JOUR A1 - Bachoc, Francois A1 - Blanchard, Gilles A1 - Neuvial, Pierre T1 - On the post selection inference constant under restricted isometry properties JF - Electronic journal of statistics N2 - Uniformly valid confidence intervals post model selection in regression can be constructed based on Post-Selection Inference (PoSI) constants. PoSI constants are minimal for orthogonal design matrices, and can be upper bounded in function of the sparsity of the set of models under consideration, for generic design matrices. In order to improve on these generic sparse upper bounds, we consider design matrices satisfying a Restricted Isometry Property (RIP) condition. We provide a new upper bound on the PoSI constant in this setting. This upper bound is an explicit function of the RIP constant of the design matrix, thereby giving an interpolation between the orthogonal setting and the generic sparse setting. We show that this upper bound is asymptotically optimal in many settings by constructing a matching lower bound. KW - Inference post model-selection KW - confidence intervals KW - PoSI constants KW - linear regression KW - high-dimensional inference KW - sparsity KW - restricted isometry property Y1 - 2018 U6 - https://doi.org/10.1214/18-EJS1490 SN - 1935-7524 VL - 12 IS - 2 SP - 3736 EP - 3757 PB - Institute of Mathematical Statistics CY - Cleveland ER - TY - JOUR A1 - Rusak, James A. A1 - Tanentzap, Andrew J. A1 - Klug, Jennifer L. A1 - Rose, Kevin C. A1 - Hendricks, Susan P. A1 - Jennings, Eleanor A1 - Laas, Alo A1 - Pierson, Donald C. A1 - Ryder, Elizabeth A1 - Smyth, Robyn L. A1 - White, D. S. A1 - Winslow, Luke A. A1 - Adrian, Rita A1 - Arvola, Lauri A1 - de Eyto, Elvira A1 - Feuchtmayr, Heidrun A1 - Honti, Mark A1 - Istvanovics, Vera A1 - Jones, Ian D. A1 - McBride, Chris G. A1 - Schmidt, Silke Regina A1 - Seekell, David A1 - Staehr, Peter A. A1 - Guangwei, Zhu T1 - Wind and trophic status explain within and among-lake variability of algal biomass JF - Limnology and oceanography letters / ASLO, Association for the Sciences of Limnology and Oceanography N2 - Phytoplankton biomass and production regulates key aspects of freshwater ecosystems yet its variability and subsequent predictability is poorly understood. We estimated within-lake variation in biomass using high-frequency chlorophyll fluorescence data from 18 globally distributed lakes. We tested how variation in fluorescence at monthly, daily, and hourly scales was related to high-frequency variability of wind, water temperature, and radiation within lakes as well as productivity and physical attributes among lakes. Within lakes, monthly variation dominated, but combined daily and hourly variation were equivalent to that expressed monthly. Among lakes, biomass variability increased with trophic status while, within-lake biomass variation increased with increasing variability in wind speed. Our results highlight the benefits of high-frequency chlorophyll monitoring and suggest that predicted changes associated with climate, as well as ongoing cultural eutrophication, are likely to substantially increase the temporal variability of algal biomass and thus the predictability of the services it provides. Y1 - 2018 U6 - https://doi.org/10.1002/lol2.10093 SN - 2378-2242 VL - 3 IS - 6 SP - 409 EP - 418 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Beermann, Jan A1 - Westbury, Michael V. A1 - Hofreiter, Michael A1 - Hilgers, Leon A1 - Deister, Fabian A1 - Neumann, Hermann A1 - Raupach, Michael J. T1 - Cryptic species in a well-known habitat BT - applying taxonomics to the amphipod genus Epimeria (Crustacea, Peracarida) JF - Scientific reports N2 - Taxonomy plays a central role in biological sciences. It provides a communication system for scientists as it aims to enable correct identification of the studied organisms. As a consequence, species descriptions should seek to include as much available information as possible at species level to follow an integrative concept of 'taxonomics'. Here, we describe the cryptic species Epimeria frankei sp. nov. from the North Sea, and also redescribe its sister species, Epimeria cornigera. The morphological information obtained is substantiated by DNA barcodes and complete nuclear 18S rRNA gene sequences. In addition, we provide, for the first time, full mitochondrial genome data as part of a metazoan species description for a holotype, as well as the neotype. This study represents the first successful implementation of the recently proposed concept of taxonomics, using data from high-throughput technologies for integrative taxonomic studies, allowing the highest level of confidence for both biodiversity and ecological research. Y1 - 2018 U6 - https://doi.org/10.1038/s41598-018-25225-x SN - 2045-2322 VL - 8 PB - Nature Publ. Group CY - London ER - TY - THES A1 - Roschinsky, Diane ED - Forst, Alexandra T1 - Thomas Morus: Utopia BT - Konzeption eines Lektürehefts für den Lateinunterricht T2 - Copia – Potsdamer Anregungen für den Lateinunterricht N2 - In Thomas Morus’ Utopia wird intensiv über die in einem idealen Staat herrschenden Verhältnisse nachgedacht. Für den Lateinunterricht empfiehlt sich dieses neulateinische Werk, weil Schüler durch seine Lektüre zum einen erkennen, dass die lateinische Sprache nach dem Untergang des römischen Reiches fortlebte, und weil sie zum anderen zu allgemeinen Reflexionen über vorbildhafte Gesellschaftsordnungen angeregt und für die dabei zu berücksichtigenden Aspekte sensibilisiert werden. So entsteht in ihnen ein Bewusstsein für die Grundfesten eines harmonischen Zusammenlebens. Das vorliegende Lektüreheft bietet umfangreiches, didaktisch aufbereitetes Material, das Lateinschülern echtes Lesevergnügen bereitet und das Lehrkräfte ohne großen Aufwand im Unterricht einsetzen können. Diese Publikation schließt damit eine für die Utopia bislang bestehende Lücke und lässt hoffen, dass das Werk künftig einen festen Platz im Lateinunterricht erhält. T3 - Copia – Potsdamer Anregungen für den Lateinunterricht - 1 KW - Morus KW - Neulatein KW - Lateindidaktik KW - Lateinunterricht KW - Utopia KW - Unterrichtsmaterial Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-504686 SN - 2748-6621 VL - 2021 IS - 1 PB - Universitätsverlag Potsdam CY - Potsdam ER - TY - CHAP A1 - Petsche, Hans-Joachim T1 - In honour of Seymour Papert BT - "Empirical Modelling" of Logo in Forth N2 - Forth is nice and flexible but to a philosopher and teacher educator Logo is the more impressing language. Both are relatives of Lisp, but Forth has a reverse Polish notation where as Logo has an infix notation. Logo allows top down programming, Forth only bottom up. Logo enables recursive programming, Forth does not. Logo includes turtle graphics, Forth has nothing comparable. So what to do if you can't get Logo and have no information about its inner architecture? This should be a case of "empirical modelling": How can you model observable results of the behaviour of Logo in terms of Forth? The main steps to solve this problem are shown in the first part of the paper. The second part of the paper discusses the problem of modelling and shows that the modelling of making and the modelling of recognition have the same mathematical structure. So "empirical modelling" can also serve for modelling desired behaviour of technical systems. The last part of the paper will show that the heuristic potential of a problem which should be modeled is more important than the programming language. The Picasso construal shows, in a very simple way, how children of different ages can model emotional relations in human behaviour with a simple Logo system. KW - Papert KW - LOGO KW - FORTH KW - Empirical Modelling KW - Construal Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-497302 ER - TY - JOUR A1 - Mumm, Rebekka A1 - Godina, Elena A1 - Koziel, Slawomir A1 - Musalek, Martin A1 - Sedlak, Petr A1 - Wittwer-Backofen, Ursula A1 - Hess, Volker A1 - Dasgupta, Parasmani A1 - Henneberg, Maciej A1 - Scheffler, Christiane T1 - External skeletal robusticity of children and adolescents BT - European references from birth to adulthood and international comparisons JF - Journal of biological and clinical anthropology JF - Anthropologischer Anzeiger ; Mitteilungsorgan der Gesellschaft für Anthropologie N2 - Background: In our modern world, the way of life in nutritional and activity behaviour has changed. As a consequence, parallel trends of an epidemic of overweight and a decline in external skeletal robusticity are observed in children and adolescents. Aim: We aim to develop reference centiles for external skeletal robusticity of European girls and boys aged 0 to 18 years using the Frame Index as an indicator and identify population specific age-related patterns. Methods: We analysed cross-sectional & longitudinal data on body height and elbow breadth of boys and girls from Europe (0-18 years, n = 41.679), India (7-18 years, n = 3.297) and South Africa (3-18 years, n = 4.346). As an indicator of external skeletal robusticity Frame Index after Frisancho (1990) was used. We developed centiles for boys and girls using the LMS-method and its extension. Results: Boys have greater external skeletal robusticity than girls. Whereas in girls Frame Index decreases continuously during growth, an increase of Frame Index from 12 to 16 years in European boys can be observed. Indian and South African boys are almost similar in Frame Index to European boys. In girls, the pattern is slightly different. Whereas South African girls are similar to European girls, Indian girls show a lesser external skeletal robusticity. Conclusion: Accurate references for external skeletal robusticity are needed to evaluate if skeletal development is adequate per age. They should be used to monitor effects of changes in way of life and physical activity levels in children and adolescents to avoid negative health outcomes like osteoporosis and arthrosis. Y1 - 2018 U6 - https://doi.org/10.1127/anthranz/2018/0826 SN - 0003-5548 VL - 74 IS - 5 SP - 383 EP - 391 PB - Schweizerbart CY - Stuttgart ER - TY - JOUR A1 - Wetzel, Maria A1 - Kempka, Thomas A1 - Kühn, Michael T1 - Quantifying rock weakening due to decreasing calcite mineral content by numerical simulations JF - Materials N2 - The quantification of changes in geomechanical properties due to chemical reactions is of paramount importance for geological subsurface utilisation, since mineral dissolution generally reduces rock stiffness. In the present study, the effective elastic moduli of two digital rock samples, the Fontainebleau and Bentheim sandstones, are numerically determined based on micro-CT images. Reduction in rock stiffness due to the dissolution of 10% calcite cement by volume out of the pore network is quantified for three synthetic spatial calcite distributions (coating, partial filling and random) using representative sub-cubes derived from the digital rock samples. Due to the reduced calcite content, bulk and shear moduli decrease by 34% and 38% in maximum, respectively. Total porosity is clearly the dominant parameter, while spatial calcite distribution has a minor impact, except for a randomly chosen cement distribution within the pore network. Moreover, applying an initial stiffness reduced by 47% for the calcite cement results only in a slightly weaker mechanical behaviour. Using the quantitative approach introduced here substantially improves the accuracy of predictions in elastic rock properties compared to general analytical methods, and further enables quantification of uncertainties related to spatial variations in porosity and mineral distribution. KW - digital rock physics KW - micro-CT KW - elastic properties KW - numerical simulation KW - chemical-mechanical interaction KW - Code_Aster KW - composite properties Y1 - 2018 U6 - https://doi.org/10.3390/ma11040542 SN - 1996-1944 VL - 11 IS - 4 PB - MDPI CY - Basel ER - TY - JOUR A1 - Zemella, Anne A1 - Thoring, Lena A1 - Hoffmeister, Christian A1 - Samalikova, Maria A1 - Ehren, Patricia A1 - Wüstenhagen, Doreen Anja A1 - Kubick, Stefan T1 - Cell-free protein synthesis as a novel tool for directed glycoengineering of active erythropoietin JF - Scientific reports N2 - As one of the most complex post-translational modification, glycosylation is widely involved in cell adhesion, cell proliferation and immune response. Nevertheless glycoproteins with an identical polypeptide backbone mostly differ in their glycosylation patterns. Due to this heterogeneity, the mapping of different glycosylation patterns to their associated function is nearly impossible. In the last years, glycoengineering tools including cell line engineering, chemoenzymatic remodeling and site-specific glycosylation have attracted increasing interest. The therapeutic hormone erythropoietin (EPO) has been investigated in particular by various groups to establish a production process resulting in a defined glycosylation pattern. However commercially available recombinant human EPO shows batch-to-batch variations in its glycoforms. Therefore we present an alternative method for the synthesis of active glycosylated EPO with an engineered O-glycosylation site by combining eukaryotic cell-free protein synthesis and site-directed incorporation of non-canonical amino acids with subsequent chemoselective modifications. Y1 - 2018 U6 - https://doi.org/10.1038/s41598-018-26936-x SN - 2045-2322 VL - 8 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Sallen, Jeffrey A1 - Hirschmann, Florian A1 - Herrmann, Christian T1 - Evaluation and Adaption of the Trier Inventory for Chronic Stress (TICS) for Assessment in Competitive Sports JF - Frontiers in psychology N2 - The demands of a career in competitive sports can lead to chronic stress perception among athletes if there is a non-conformity of requirements and available coping resources. The Trier Inventory for Chronic Stress (TICS) (Schulz et al., 2004) is said to be thoroughly validated. Nevertheless, it has not yet been subjected to a confirmatory factor analysis. The present study aims (1) to evaluate the factorial validity of the TICS within the context of competitive sports and (2) to adapt a short version (TICS-36). The total sample consisted of 564 athletes (age in years: M = 19.1, SD = 3.70). The factor structure of the original TICS did not adequately fit the present data, whereas the short version presented a satisfactory fit. The results indicate that the TICS-36 is an economical instrument for gathering interpretable information about chronic stress. For assessment in competitive sports with TICS-36, we generated overall and gender-specific norm values. KW - chronic stressors KW - mental health KW - athletes KW - stress measurement KW - Olympic sports KW - factor analysis KW - measurement invariance Y1 - 2018 U6 - https://doi.org/10.3389/fpsyg.2018.00308 SN - 1664-1078 VL - 9 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Donat, Stefan A1 - Lourenco, Marta Sofia Rocha A1 - Paolini, Alessio A1 - Otten, Cecile A1 - Renz, Marc A1 - Abdelilah-Seyfried, Salim T1 - Heg1 and Ccm1/2 proteins control endocardial mechanosensitivity during zebrafish valvulogenesis JF - eLife N2 - Endothelial cells respond to different levels of fluid shear stress through adaptations of their mechanosensitivity. Currently, we lack a good understanding of how this contributes to sculpting of the cardiovascular system. Cerebral cavernous malformation (CCM) is an inherited vascular disease that occurs when a second somatic mutation causes a loss of CCM1/KRIT1, CCM2, or CCM3 proteins. Here, we demonstrate that zebrafish Krit1 regulates the formation of cardiac valves. Expression of heg1, which encodes a binding partner of Krit1, is positively regulated by blood-flow. In turn, Heg1 stabilizes levels of Krit1 protein, and both Heg1 and Krit1 dampen expression levels of klf2a, a major mechanosensitive gene. Conversely, loss of Krit1 results in increased expression of klf2a and notch1b throughout the endocardium and prevents cardiac valve leaflet formation. Hence, the correct balance of blood-flow-dependent induction and Krit1 protein mediated repression of klf2a and notch1b ultimately shapes cardiac valve leaflet morphology. Y1 - 2018 U6 - https://doi.org/10.7554/eLife.28939 SN - 2050-084X VL - 7 PB - eLife Sciences Publications CY - Cambridge ER - TY - JOUR A1 - Olmer, Ruth A1 - Engels, Lena A1 - Usman, Abdulai A1 - Menke, Sandra A1 - Malik, Muhammad Nasir Hayat A1 - Pessler, Frank A1 - Goehring, Gudrun A1 - Bornhorst, Dorothee A1 - Bolten, Svenja A1 - Abdelilah-Seyfried, Salim A1 - Scheper, Thomas A1 - Kempf, Henning A1 - Zweigerdt, Robert A1 - Martin, Ulrich T1 - Differentiation of Human Pluripotent Stem Cells into Functional Endothelial Cells in Scalable Suspension Culture JF - Stem Cell Reports N2 - Endothelial cells (ECs) are involved in a variety of cellular responses. As multifunctional components of vascular structures, endothelial (progenitor) cells have been utilized in cellular therapies and are required as an important cellular component of engineered tissue constructs and in vitro disease models. Although primary ECs from different sources are readily isolated and expanded, cell quantity and quality in terms of functionality and karyotype stability is limited. ECs derived from human induced pluripotent stem cells (hiPSCs) represent an alternative and potentially superior cell source, but traditional culture approaches and 2D differentiation protocols hardly allow for production of large cell numbers. Aiming at the production of ECs, we have developed a robust approach for efficient endothelial differentiation of hiPSCs in scalable suspension culture. The established protocol results in relevant numbers of ECs for regenerative approaches and industrial applications that show in vitro proliferation capacity and a high degree of chromosomal stability. KW - virus infection KW - progenitor cells KW - in vitro KW - telomere dysfunction KW - cord blood KW - cardiomyogenic differentiation KW - angiogenesis KW - efficient KW - aberrations KW - expression Y1 - 2017 U6 - https://doi.org/10.1016/j.stemcr.2018.03.017 SN - 2213-6711 VL - 10 IS - 5 PB - Springer CY - New York ER - TY - JOUR A1 - Taron, Ulrike H. A1 - Lell, Moritz A1 - Barlow, Axel A1 - Paijmans, Johanna L. A. T1 - Testing of Alignment Parameters for Ancient Samples BT - Evaluating and Optimizing Mapping Parameters for Ancient Samples Using the TAPAS Tool JF - Genese N2 - High-throughput sequence data retrieved from ancient or other degraded samples has led to unprecedented insights into the evolutionary history of many species, but the analysis of such sequences also poses specific computational challenges. The most commonly used approach involves mapping sequence reads to a reference genome. However, this process becomes increasingly challenging with an elevated genetic distance between target and reference or with the presence of contaminant sequences with high sequence similarity to the target species. The evaluation and testing of mapping efficiency and stringency are thus paramount for the reliable identification and analysis of ancient sequences. In this paper, we present ‘TAPAS’, (Testing of Alignment Parameters for Ancient Samples), a computational tool that enables the systematic testing of mapping tools for ancient data by simulating sequence data reflecting the properties of an ancient dataset and performing test runs using the mapping software and parameter settings of interest. We showcase TAPAS by using it to assess and improve mapping strategy for a degraded sample from a banded linsang (Prionodon linsang), for which no closely related reference is currently available. This enables a 1.8-fold increase of the number of mapped reads without sacrificing mapping specificity. The increase of mapped reads effectively reduces the need for additional sequencing, thus making more economical use of time, resources, and sample material. KW - ancient DNA KW - short-read mapping KW - palaeogenomics KW - paleogenomics KW - alignment sensitivity/specificity Y1 - 2018 U6 - https://doi.org/10.3390/genes9030157 SN - 2073-4425 VL - 9 IS - 3 PB - MDPI CY - Basel ER - TY - JOUR A1 - Martin-Creuzburg, Dominik A1 - Massier, Tamara A1 - Wacker, Alexander T1 - Sex-Specific differences in essential lipid requirements of Daphnia magna JF - Frontiers in Ecology and Evolution N2 - Sex-specific differences in nutritional requirements may crucially influence the performances of the sexes, which may have implications for sexual reproduction and thus is of great ecological and evolutionary interest. In the freshwater model species Daphnia magna, essential lipid requirements have been extensively studied. Dietary deficiencies in sterols and polyunsaturated fatty acids (PUFA) have been shown to constrain somatic growth and parthenogenetic reproduction of female Daphnia. In contrast, nutrient requirements of male Daphnia have not been studied yet. Supplementation experiments were conducted to investigate differences in sterol (cholesterol) and PUFA (eicosapentaenoic acid, EPA) requirements between female and male D. magna. Thresholds for sterol-limited juvenile growth were higher in females than in males, suggesting that females are more susceptible to dietary sterol deficiencies than males. Sex-specific differences in maximum somatic growth rates were evident primarily in the presence of dietary EPA; females could not exploit their generally higher growth potential in the absence of dietary PUFA. However, the thresholds for EPA-limited growth did not differ between sexes, suggesting that both sexes have similar dietary EPA requirements during juvenile growth. During a life history experiment, the gain in body dry mass was higher in females than in males, irrespective of food treatment. In both sexes, the gain in body dry mass increased significantly upon EPA supplementation, indicating that both sexes benefited from dietary EPA supply also later in life. However, the positive effects of EPA supplementation were most pronounced for female reproduction-related traits (i.e., clutch sizes, egg dry masses, and total dry mass investment in reproduction). The high maternal investment in reproduction resulted in a depletion of nutrients in female somata. In contrast, the comparatively low paternal investment in reproduction allowed for the accumulation of nutrients in male somata. We conclude that males are generally less susceptible to dietary nutrient deficiencies than females, because they can rely more on internal body stores. Our data suggest that the performances of the sexes are differentially influenced by lipid-mediated food quality, which may have consequences for sexual reproduction and thus the production of resting eggs and the maintenance of Daphnia populations. KW - allocation KW - cholesterol KW - eicosapentaenoic acid KW - food quality KW - male Daphnia KW - polyunsaturated fatty acids KW - sterols KW - lipid limitation thresholds Y1 - 2018 U6 - https://doi.org/10.3389/fevo.2018.00089 SN - 2296-701X VL - 6 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Zurell, Damaris A1 - von Wehrden, Henrik A1 - Rotics, Shay A1 - Kaatz, Michael A1 - Gross, Helge A1 - Schlag, Lena A1 - Schäfer, Merlin A1 - Sapir, Nir A1 - Turjeman, Sondra A1 - Wikelski, Martin A1 - Nathan, Ran A1 - Jeltsch, Florian T1 - Home range size and resource use of breeding and non-breeding white storks along a land use gradient JF - Frontiers in Ecology and Evolution N2 - Biotelemetry is increasingly used to study animal movement at high spatial and temporal resolution and guide conservation and resource management. Yet, limited sample sizes and variation in space and habitat use across regions and life stages may compromise robustness of behavioral analyses and subsequent conservation plans. Here, we assessed variation in (i) home range sizes, (ii) home range selection, and (iii) fine-scale resource selection of white storks across breeding status and regions and test model transferability. Three study areas were chosen within the Central German breeding grounds ranging from agricultural to fluvial and marshland. We monitored GPS-locations of 62 adult white storks equipped with solar-charged GPS/3D-acceleration (ACC) transmitters in 2013-2014. Home range sizes were estimated using minimum convex polygons. Generalized linear mixed models were used to assess home range selection and fine-scale resource selection by relating the home ranges and foraging sites to Corine habitat variables and normalized difference vegetation index in a presence/pseudo-absence design. We found strong variation in home range sizes across breeding stages with significantly larger home ranges in non-breeding compared to breeding white storks, but no variation between regions. Home range selection models had high explanatory power and well predicted overall density of Central German white stork breeding pairs. Also, they showed good transferability across regions and breeding status although variable importance varied considerably. Fine-scale resource selection models showed low explanatory power. Resource preferences differed both across breeding status and across regions, and model transferability was poor. Our results indicate that habitat selection of wild animals may vary considerably within and between populations, and is highly scale dependent. Thereby, home range scale analyses show higher robustness whereas fine-scale resource selection is not easily predictable and not transferable across life stages and regions. Such variation may compromise management decisions when based on data of limited sample size or limited regional coverage. We thus recommend home range scale analyses and sampling designs that cover diverse regional landscapes and ensure robust estimates of habitat suitability to conserve wild animal populations. KW - 3D-acceleration sensor KW - biotelemetry KW - Ciconia ciconia KW - home range selection KW - resource selection Y1 - 2018 U6 - https://doi.org/10.3389/fevo.2018.00079 SN - 2296-701X VL - 6 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Ramage, Justine Lucille A1 - Irrgang, Anna Maria A1 - Morgenstern, Anne A1 - Lantuit, Hugues T1 - Increasing coastal slump activity impacts the release of sediment and organic carbon into the Arctic Ocean JF - Biogeosciences N2 - Retrogressive thaw slumps (RTSs) are among the most active thermokarst landforms in the Arctic and deliver a large amount of material to the Arctic Ocean. However, their contribution to the organic carbon (OC) budget is unknown. We provide the first estimate of the contribution of RTSs to the nearshore OC budget of the Yukon Coast, Canada, and describe the evolution of coastal RTSs between 1952 and 2011 in this area. We (1) describe the evolution of RTSs between 1952 and 2011; (2) calculate the volume of eroded material and stocks of OC mobilized through slumping, including soil organic carbon (SOC) and dissolved organic carbon (DOC); and (3) estimate the OC fluxes mobilized through slumping between 1972 and 2011. We identified RTSs using high- resolution satellite imagery from 2011 and geocoded aerial photographs from 1952 and 1972. To estimate the volume of eroded material, we applied spline interpolation on an airborne lidar dataset acquired in July 2013. We inferred the stocks of mobilized SOC and DOC from existing related literature. Our results show a 73% increase in the number of RTSs and 14% areal expansion between 1952 and 2011. In the study area, RTSs displaced at least 16.6 x 10(6) m(3) of material, 53% of which was ice, and mobilized 145.9 x 10(6) kg of OC. Between 1972 and 2011, 49 RTSs displaced 8.6 x 10(3) m(3) yr(-1) of material, adding 0.6% to the OC flux released by coastal retreat along the Yukon Coast. Our results show that the contribution of RTSs to the nearshore OC budget is non-negligible and should be included when estimating the quantity of OC released from the Arctic coast to the ocean. Y1 - 2018 U6 - https://doi.org/10.5194/bg-15-1483-2018 SN - 1726-4170 SN - 1726-4189 VL - 15 IS - 5 SP - 1483 EP - 1495 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Di Baldassarre, Giuliano A1 - Kreibich, Heidi A1 - Vorogushyn, Sergiy A1 - Aerts, Jeroen A1 - Arnbjerg-Nielsen, Karsten A1 - Barendrecht, Marlies A1 - Bates, Paul A1 - Borga, Marco A1 - Botzen, Wouter A1 - Bubeck, Philip A1 - De Marchi, Bruna A1 - Llasat, Carmen Maria A1 - Mazzoleni, Maurizio A1 - Molinari, Daniela A1 - Mondino, Elena A1 - Mard, Johanna A1 - Petrucci, Olga A1 - Scolobig, Anna A1 - Viglione, Alberto A1 - Ward, Philip J. T1 - Hess Opinions: An interdisciplinary research agenda to explore the unintended consequences of structural flood protection JF - Hydrology and earth system sciences : HESS N2 - One common approach to cope with floods is the implementation of structural flood protection measures, such as levees or flood-control reservoirs, which substantially reduce the probability of flooding at the time of implementation. Numerous scholars have problematized this approach. They have shown that increasing the levels of flood protection can attract more settlements and high-value assets in the areas protected by the new measures. Other studies have explored how structural measures can generate a sense of complacency, which can act to reduce preparedness. These paradoxical risk changes have been described as "levee effect", "safe development paradox" or "safety dilemma". In this commentary, we briefly review this phenomenon by critically analysing the intended benefits and unintended effects of structural flood protection, and then we propose an interdisciplinary research agenda to uncover these paradoxical dynamics of risk. Y1 - 2018 U6 - https://doi.org/10.5194/hess-22-5629-2018 SN - 1027-5606 SN - 1607-7938 VL - 22 IS - 11 SP - 5629 EP - 5637 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Zimmermann, Marc A1 - Grigoriev, Dmitry A1 - Puretskiy, Nikolay A1 - Böker, Alexander T1 - Characteristics of microcontact printing with polyelectrolyte ink for the precise preparation of patches on silica particles JF - RSC Advances N2 - This publication demonstrates the abilities of a precise and straightforward microcontact printing approach for the preparation of patchy silica particles. In a broad particle size range, it is possible to finely tune the number and parameters of three-dimensional patches like diameter and thickness using only polyethyleneimine ink, poly(dimethoxysilane) as stamp material and a suitable release solvent. Y1 - 2018 U6 - https://doi.org/10.1039/c8ra07955b SN - 2046-2069 VL - 8 IS - 69 SP - 39241 EP - 39247 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Bouchoule, Isabelle A1 - Schemmer, Max A1 - Henkel, Carsten T1 - Cooling phonon modes of a Bose condensate with uniform few body losses JF - Scipost Physics N2 - We present a general analysis of the cooling produced by losses on condensates or quasi-condensates. We study how the occupations of the collective phonon modes evolve in time, assuming that the loss process is slow enough so that each mode adiabatically follows the decrease of the mean density. The theory is valid for any loss process whose rate is proportional to the jth power of the density, but otherwise spatially uniform. We cover both homogeneous gases and systems confined in a smooth potential. For a low-dimensional gas, we can take into account the modified equation of state due to the broadening of the cloud width along the tightly confined directions, which occurs for large interactions. We find that at large times, the temperature decreases proportionally to the energy scale mc(2), where m is the mass of the particles and c the sound velocity. We compute the asymptotic ratio of these two quantities for different limiting cases: a homogeneous gas in any dimension and a one-dimensional gas in a harmonic trap. Y1 - 2018 U6 - https://doi.org/10.21468/SciPostPhys.5.5.043 SN - 2542-4653 VL - 5 IS - 5 PB - Scipost foundation CY - Amsterdam ER - TY - JOUR A1 - Kluge, Annette A1 - Gronau, Norbert T1 - Intentional forgetting in organizations BT - the Importance of Eliminating Retrieval Cues for Implementing New Routines JF - Frontiers in psychology N2 - To cope with the already large, and ever increasing, amount of information stored in organizational memory, "forgetting," as an important human memory process, might be transferred to the organizational context. Especially in intentionally planned change processes (e.g., change management), forgetting is an important precondition to impede the recall of obsolete routines and adapt to new strategic objectives accompanied by new organizational routines. We first comprehensively review the literature on the need for organizational forgetting and particularly on accidental vs. intentional forgetting. We discuss the current state of the art of theory and empirical evidence on forgetting from cognitive psychology in order to infer mechanisms applicable to the organizational context. In this respect, we emphasize retrieval theories and the relevance of retrieval cues important for forgetting. Subsequently, we transfer the empirical evidence that the elimination of retrieval cues leads to faster forgetting to the forgetting of organizational routines, as routines are part of organizational memory. We then propose a classification of cues (context, sensory, business process-related cues) that are relevant in the forgetting of routines, and discuss a meta-cue called the "situational strength" cue, which is relevant if cues of an old and a new routine are present simultaneously. Based on the classification as business process-related cues (information, team, task, object cues), we propose mechanisms to accelerate forgetting by eliminating specific cues based on the empirical and theoretical state of the art. We conclude that in intentional organizational change processes, the elimination of cues to accelerate forgetting should be used in change management practices. KW - change management KW - multi-actor routines KW - business processes KW - knowledge management KW - organizational memory KW - situational strength Y1 - 2018 U6 - https://doi.org/10.3389/fpsyg.2018.00051 SN - 1664-1078 VL - 9 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Kretschmer, Marlene A1 - Cohen, Judah A1 - Matthias, Vivien A1 - Runge, Jakob A1 - Coumou, Dim T1 - The different stratospheric influence on cold-extremes in Eurasia and North America JF - npj Climate and Atmospheric Science N2 - The stratospheric polar vortex can influence the tropospheric circulation and thereby winter weather in the mid-latitudes. Weak vortex states, often associated with sudden stratospheric warmings (SSW), have been shown to increase the risk of cold-spells especially over Eurasia, but its role for North American winters is less clear. Using cluster analysis, we show that there are two dominant patterns of increased polar cap heights in the lower stratosphere. Both patterns represent a weak polar vortex but they are associated with different wave mechanisms and different regional tropospheric impacts. The first pattern is zonally symmetric and associated with absorbed upward-propagating wave activity, leading to a negative phase of the North Atlantic Oscillation (NAO) and cold-air outbreaks over northern Eurasia. This coupling mechanism is well-documented in the literature and is consistent with the downward migration of the northern annular mode (NAM). The second pattern is zonally asymmetric and linked to downward reflected planetary waves over Canada followed by a negative phase of the Western Pacific Oscillation (WPO) and cold-spells in Central Canada and the Great Lakes region. Causal effect network (CEN) analyses confirm the atmospheric pathways associated with this asymmetric pattern. Moreover, our findings suggest the reflective mechanism to be sensitive to the exact region of upward wave-activity fluxes and to be state-dependent on the strength of the vortex. Identifying the causal pathways that operate on weekly to monthly timescales can pave the way for improved sub-seasonal to seasonal forecasting of cold spells in the mid-latitudes. Y1 - 2018 U6 - https://doi.org/10.1038/s41612-018-0054-4 SN - 2397-3722 VL - 1 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Omidbakhshfard, Mohammad Amin A1 - Fujikura, Ushio A1 - Olas, Justyna Jadwiga A1 - Xue, Gang-Ping A1 - Balazadeh, Salma A1 - Mueller-Roeber, Bernd T1 - GROWTH-REGULATING FACTOR 9 negatively regulates arabidopsis leaf growth by controlling ORG3 and restricting cell proliferation in leaf primordia JF - PLoS Genetics : a peer-reviewed, open-access journal N2 - Leaf growth is a complex process that involves the action of diverse transcription factors (TFs) and their downstream gene regulatory networks. In this study, we focus on the functional characterization of the Arabidopsis thaliana TF GROWTH-REGULATING FACTOR9 (GRF9) and demonstrate that it exerts its negative effect on leaf growth by activating expression of the bZIP TF OBP3-RESPONSIVE GENE 3 (ORG3). While grf9 knockout mutants produce bigger incipient leaf primordia at the shoot apex, rosette leaves and petals than the wild type, the sizes of those organs are reduced in plants overexpressing GRF9 (GRF9ox). Cell measurements demonstrate that changes in leaf size result from alterations in cell numbers rather than cell sizes. Kinematic analysis and 5-ethynyl-2'-deoxyuridine (EdU) incorporation assay revealed that GRF9 restricts cell proliferation in the early developing leaf. Performing in vitro binding site selection, we identified the 6-base motif 5'-CTGACA-3' as the core binding site of GRF9. By global transcriptome profiling, electrophoretic mobility shift assay (EMSA) and chromatin immunoprecipitation (ChIP) we identified ORG3 as a direct downstream, and positively regulated target of GRF9. Genetic analysis of grf9 org3 and GRF9ox org3 double mutants reveals that both transcription factors act in a regulatory cascade to control the final leaf dimensions by restricting cell number in the developing leaf. Y1 - 2018 U6 - https://doi.org/10.1371/journal.pgen.1007484 SN - 1553-7404 VL - 14 IS - 7 PB - PLoS CY - San Fransisco ER - TY - JOUR A1 - Kubin, Markus A1 - Guo, Meiyuan A1 - Kroll, Thomas A1 - Loechel, Heike A1 - Kallman, Erik A1 - Baker, Michael L. A1 - Mitzner, Rolf A1 - Gul, Sheraz A1 - Kern, Jan A1 - Föhlisch, Alexander A1 - Erko, Alexei A1 - Bergmann, Uwe A1 - Yachandra, Vittal A1 - Yano, Junko A1 - Lundberg, Marcus A1 - Wernet, Philippe T1 - Probing the oxidation state of transition metal complexes BT - a case study on how charge and spin densities determine Mn L-edge X-ray absorption energies JF - Chemical science N2 - Transition metals in inorganic systems and metalloproteins can occur in different oxidation states, which makes them ideal redox-active catalysts. To gain a mechanistic understanding of the catalytic reactions, knowledge of the oxidation state of the active metals, ideally in operando, is therefore critical. L-edge X-ray absorption spectroscopy (XAS) is a powerful technique that is frequently used to infer the oxidation state via a distinct blue shift of L-edge absorption energies with increasing oxidation state. A unified description accounting for quantum-chemical notions whereupon oxidation does not occur locally on the metal but on the whole molecule and the basic understanding that L-edge XAS probes the electronic structure locally at the metal has been missing to date. Here we quantify how charge and spin densities change at the metal and throughout the molecule for both redox and core-excitation processes. We explain the origin of the L-edge XAS shift between the high-spin complexes Mn-II(acac)(2) and Mn-III(acac)(3) as representative model systems and use ab initio theory to uncouple effects of oxidation-state changes from geometric effects. The shift reflects an increased electron affinity of Mn-III in the core-excited states compared to the ground state due to a contraction of the Mn 3d shell upon core-excitation with accompanied changes in the classical Coulomb interactions. This new picture quantifies how the metal-centered core hole probes changes in formal oxidation state and encloses and substantiates earlier explanations. The approach is broadly applicable to mechanistic studies of redox-catalytic reactions in molecular systems where charge and spin localization/delocalization determine reaction pathways. Y1 - 2018 U6 - https://doi.org/10.1039/c8sc00550h SN - 2041-6520 SN - 2041-6539 VL - 9 IS - 33 SP - 6813 EP - 6829 PB - Royal Society of Chemistry CY - Cambridge ER - TY - JOUR A1 - Tan, Li A1 - Liu, Bing A1 - Siemensmeyer, Konrad A1 - Glebe, Ulrich A1 - Böker, Alexander T1 - Synthesis of Polystyrene-Coated Superparamagnetic and Ferromagnetic Cobalt Nanoparticles JF - Polymers N2 - Polystyrene-coated cobalt nanoparticles (NPs) were synthesized through a dual-stage thermolysis of cobalt carbonyl (Co-2(CO)(8)). The amine end-functionalized polystyrene surfactants with varying molecular weight were prepared via atom-transfer radical polymerization technique. By changing the concentration of these polymeric surfactants, Co NPs with different size, size distribution, and magnetic properties were obtained. Transmission electron microscopy characterization showed that the size of Co NPs stabilized with lower molecular weight polystyrene surfactants (M-n = 2300 g/mol) varied from 12-22 nm, while the size of Co NPs coated with polystyrene of middle (M-n = 4500 g/mol) and higher molecular weight (M-n = 10,500 g/mol) showed little change around 20 nm. Magnetic measurements revealed that the small cobalt particles were superparamagnetic, while larger particles were ferromagnetic and self-assembled into 1-D chain structures. Thermogravimetric analysis revealed that the grafting density of polystyrene with lower molecular weight is high. To the best of our knowledge, this is the first study to obtain both superparamagnetic and ferromagnetic Co NPs by changing the molecular weight and concentration of polystyrene through the dual-stage decomposition method. KW - cobalt nanoparticles KW - polystyrene KW - superparamagnetic KW - ferromagnetic KW - molecular weight Y1 - 2018 U6 - https://doi.org/10.3390/polym10101053 SN - 2073-4360 VL - 10 IS - 10 PB - MDPI CY - Basel ER - TY - JOUR A1 - Otten, Cecile A1 - Knox, Jessica A1 - Boulday, Gwenola A1 - Eymery, Mathias A1 - Haniszewski, Marta A1 - Neuenschwander, Martin A1 - Radetzki, Silke A1 - Vogt, Ingo A1 - Haehn, Kristina A1 - De Luca, Coralie A1 - Cardoso, Cecile A1 - Hamad, Sabri A1 - Igual Gil, Carla A1 - Roy, Peter A1 - Albiges-Rizo, Corinne A1 - Faurobert, Eva A1 - von Kries, Jens P. A1 - Campillos, Monica A1 - Tournier-Lasserve, Elisabeth A1 - Derry, William Brent A1 - Abdelilah-Seyfried, Salim T1 - Systematic pharmacological screens uncover novel pathways involved in cerebral cavernous malformations JF - EMBO molecular medicine N2 - Cerebral cavernous malformations (CCMs) are vascular lesions in the central nervous system causing strokes and seizures which currently can only be treated through neurosurgery. The disease arises through changes in the regulatory networks of endothelial cells that must be comprehensively understood to develop alternative, non-invasive pharmacological therapies. Here, we present the results of several unbiased small-molecule suppression screens in which we applied a total of 5,268 unique substances to CCM mutant worm, zebrafish, mouse, or human endothelial cells. We used a systems biology-based target prediction tool to integrate the results with the whole-transcriptome profile of zebrafish CCM2 mutants, revealing signaling pathways relevant to the disease and potential targets for small-molecule-based therapies. We found indirubin-3-monoxime to alleviate the lesion burden in murine preclinical models of CCM2 and CCM3 and suppress the loss-of-CCM phenotypes in human endothelial cells. Our multi-organism-based approach reveals new components of the CCM regulatory network and foreshadows novel small-molecule-based therapeutic applications for suppressing this devastating disease in patients. KW - angiogenesis KW - CCM KW - ERK5 KW - indirubin-3-monoxime KW - KLF2 Y1 - 2018 U6 - https://doi.org/10.15252/emmm.201809155 SN - 1757-4676 SN - 1757-4684 VL - 10 IS - 10 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Hlawenka, Peter A1 - Siemensmeyer, Konrad A1 - Weschke, Eugen A1 - Varykhalov, Andrei A1 - Sanchez-Barriga, Jaime A1 - Shitsevalova, Natalya Y. A1 - Dukhnenko, A. V. A1 - Filipov, V. B. A1 - Gabani, Slavomir A1 - Flachbart, Karol A1 - Rader, Oliver A1 - Rienks, Emile D. L. T1 - Samarium hexaboride is a trivial surface conductor JF - Nature Communications N2 - SmB6 is predicted to be the first member of the intersection of topological insulators and Kondo insulators, strongly correlated materials in which the Fermi level lies in the gap of a many-body resonance that forms by hybridization between localized and itinerant states. While robust, surface-only conductivity at low temperature and the observation of surface states at the expected high symmetry points appear to confirm this prediction, we find both surface states at the (100) surface to be topologically trivial. We find the (Gamma) over bar state to appear Rashba split and explain the prominent (X) over bar state by a surface shift of the many-body resonance. We propose that the latter mechanism, which applies to several crystal terminations, can explain the unusual surface conductivity. While additional, as yet unobserved topological surface states cannot be excluded, our results show that a firm connection between the two material classes is still outstanding. Y1 - 2018 U6 - https://doi.org/10.1038/s41467-018-02908-7 SN - 2041-1723 VL - 9 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Hochrein, Lena A1 - Mitchell, Leslie A. A1 - Schulz, Karina A1 - Messerschmidt, Katrin A1 - Müller-Röber, Bernd T1 - L-SCRaMbLE as a tool for light-controlled Cre-mediated recombination in yeast JF - Nature Communications N2 - The synthetic yeast genome constructed by the International Synthetic Yeast Sc2.0 consortium adds thousands of loxPsym recombination sites to all 16 redesigned chromosomes, allowing the shuffling of Sc2.0 chromosome parts by the Cre-loxP recombination system thereby enabling genome evolution experiments. Here, we present L-SCRaMbLE, a lightcontrolled Cre recombinase for use in the yeast Saccharomyces cerevisiae. L-SCRaMbLE allows tight regulation of recombinase activity with up to 179-fold induction upon exposure to red light. The extent of recombination depends on induction time and concentration of the chromophore phycocyanobilin (PCB), which can be easily adjusted. The tool presented here provides improved recombination control over the previously reported estradiol-dependent SCRaMbLE induction system, mediating a larger variety of possible recombination events in SCRaMbLE-ing a reporter plasmid. Thereby, L-SCRaMbLE boosts the potential for further customization and provides a facile application for use in the S. cerevisiae genome reengineering project Sc2.0 or in other recombination-based systems. Y1 - 2018 U6 - https://doi.org/10.1038/s41467-017-02208-6 SN - 2041-1723 VL - 9 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Krüger, Stefanie A1 - Schwarze, Michael A1 - Baumann, Otto A1 - Günter, Christina A1 - Bruns, Michael A1 - Kübel, Christian A1 - Szabo, Dorothee Vinga A1 - Meinusch, Rafael A1 - Bermudez, Veronica de Zea A1 - Taubert, Andreas T1 - Bombyx mori silk/titania/gold hybrid materials for photocatalytic water splitting BT - combining renewable raw materials with clean fuels JF - Beilstein journal of nanotechnology N2 - The synthesis, structure, and photocatalytic water splitting performance of two new titania (TiO2)/gold(Au)/Bombyx mori silk hybrid materials are reported. All materials are monoliths with diameters of up to ca. 4.5 cm. The materials are macroscopically homogeneous and porous with surface areas between 170 and 210 m(2)/g. The diameter of the TiO2 nanoparticles (NPs) - mainly anatase with a minor fraction of brookite - and the Au NPs are on the order of 5 and 7-18 nm, respectively. Addition of poly(ethylene oxide) to the reaction mixture enables pore size tuning, thus providing access to different materials with different photocatalytic activities. Water splitting experiments using a sunlight simulator and a Xe lamp show that the new hybrid materials are effective water splitting catalysts and produce up to 30 mmol of hydrogen per 24 h. Overall the article demonstrates that the combination of a renewable and robust scaffold such as B. mori silk with a photoactive material provides a promising approach to new monolithic photocatalysts that can easily be recycled and show great potential for application in lightweight devices for green fuel production. KW - Bombyx mori silk KW - gold KW - photocatalytic water splitting KW - titania Y1 - 2018 U6 - https://doi.org/10.3762/bjnano.9.21 SN - 2190-4286 VL - 9 SP - 187 EP - 204 PB - Beilstein-Institut zur Förderung der Chemischen Wissenschaften CY - Frankfurt, Main ER - TY - JOUR A1 - Schneider, Matthias A1 - Günter, Christina A1 - Taubert, Andreas T1 - Co-deposition of a hydrogel/calcium phosphate hybrid layer on 3D printed poly(lactic acid) scaffolds via dip coating BT - Towards Automated Biomaterials Fabrication JF - Polymers N2 - The article describes the surface modification of 3D printed poly(lactic acid) (PLA) scaffolds with calcium phosphate (CP)/gelatin and CP/chitosan hybrid coating layers. The presence of gelatin or chitosan significantly enhances CP co-deposition and adhesion of the mineral layer on the PLA scaffolds. The hydrogel/CP coating layers are fairly thick and the mineral is a mixture of brushite, octacalcium phosphate, and hydroxyapatite. Mineral formation is uniform throughout the printed architectures and all steps (printing, hydrogel deposition, and mineralization) are in principle amenable to automatization. Overall, the process reported here therefore has a high application potential for the controlled synthesis of biomimetic coatings on polymeric biomaterials. KW - 3D printing KW - dip-coating KW - poly(lactic acid) KW - PLA KW - calcium phosphate KW - gelatin KW - chitosan KW - hydrogel KW - calcium phosphate hybrid material KW - biomaterials Y1 - 2018 U6 - https://doi.org/10.3390/polym10030275 SN - 2073-4360 VL - 10 IS - 3 PB - MDPI CY - Basel ER - TY - JOUR A1 - Lopukhina, Anastasiya A1 - Laurinavichyute, Anna A1 - Lopukhin, Konstantin A1 - Dragoy, Olga V. T1 - The Mental Representation of Polysemy across Word Classes JF - Frontiers in psychology N2 - Experimental studies on polysemy have come to contradictory conclusions on whether words with multiple senses are stored as separate or shared mental representations. The present study examined the semantic relatedness and semantic similarity of literal and non-literal (metonymic and metaphorical) senses of three word classes: nouns, verbs, and adjectives. Two methods were used: a psycholinguistic experiment and a distributional analysis of corpus data. In the experiment, participants were presented with 6-12 short phrases containing a polysemous word in literal, metonymic, or metaphorical senses and were asked to classify them so that phrases with the same perceived sense were grouped together. To investigate the impact of professional background on their decisions, participants were controlled for linguistic vs. non-linguistic education. For nouns and verbs, all participants preferred to group together phrases with literal and metonymic senses, but not any other pairs of senses. For adjectives, two pairs of senses were often grouped together: literal with metonymic, and metonymic with metaphorical. Participants with a linguistic background were more accurate than participants with non-linguistic backgrounds, although both groups shared principal patterns of sense classification. For the distributional analysis of corpus data, we used a semantic vector approach to quantify the similarity of phrases with literal, metonymic, and metaphorical senses in the corpora. We found that phrases with literal and metonymic senses had the highest degree of similarity for the three word classes, and that metonymic and metaphorical senses of adjectives had the highest degree of similarity among all word classes. These findings are in line with the experimental results. Overall, the results suggest that the mental representation of a polysemous word depends on its word class. In nouns and verbs, literal and metonymic senses are stored together, while metaphorical senses are stored separately; in adjectives, metonymic senses significantly overlap with both literal and metaphorical senses. KW - polysemy KW - lexical representation KW - metaphor KW - metonymy KW - semantic vectors KW - word classes Y1 - 2018 U6 - https://doi.org/10.3389/fpsyg.2018.00192 SN - 1664-1078 VL - 9 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Neugart, Susanne A1 - Wiesner-Reinhold, Melanie A1 - Frede, Katja A1 - Jander, Elisabeth A1 - Homann, Thomas A1 - Rawel, Harshadrai Manilal A1 - Schreiner, Monika A1 - Baldermann, Susanne T1 - Effect of Solid Biological Waste Compost on the Metabolite Profile of Brassica rapa ssp chinensis JF - Frontiers in plant science : FPLS N2 - Large quantities of biological waste are generated at various steps within the food production chain and a great utilization potential for this solid biological waste exists apart from the current main usage for the feedstuff sector. It remains unclear how the usage of biological waste as compost modulates plant metabolites. We investigated the effect of biological waste of the processing of coffee, aronia, and hop added to soil on the plant metabolite profile by means of liquid chromatography in pak choi sprouts. Here we demonstrate that the solid biological waste composts induced specific changes in the metabolite profiles and the changes are depending on the type of the organic residues and its concentration in soil. The targeted analysis of selected plant metabolites, associated with health beneficial properties of the Brassicaceae family, revealed increased concentrations of carotenoids (up to 3.2-fold) and decreased amounts of glucosinolates (up to 4.7-fold) as well as phenolic compounds (up to 1.5-fold). KW - metabolite profiling KW - LC/MS KW - pak choi KW - carotenoids KW - phenolic compounds KW - glucosinolates Y1 - 2018 U6 - https://doi.org/10.3389/fpls.2018.00305 SN - 1664-462X VL - 9 PB - Frontiers Media CY - Lausanne ER - TY - JOUR A1 - Odongo, Grace Akinyi A1 - Schlotz, Nina A1 - Baldermann, Susanne A1 - Neugart, Susanne A1 - Huyskens-Keil, Susanne A1 - Ngwene, Benard A1 - Trierweiler, Bernhard A1 - Schreiner, Monika A1 - Lamy, Evelyn T1 - African Nightshade (Solanum scabrum Mill.) BT - Impact of Cultivation and Plant Processing on Its Health Promoting Potential as Determined in a Human Liver Cell Model JF - Nutrients N2 - Plant cultivation and processing may impact nutrient and phytochemical content of vegetables. The present study aimed at determining the influence of cultivation and processing on the health promoting capacity of African nightshade (Solanum scabrum Mill.) leaves, an indigenous vegetable, rich in nutrients and phytochemicals. Anti-genotoxicity against the human liver carcinogen aflatoxin B1 (AFB(1)) as determined by the comet assay and radical oxygen species (ROS) scavenging capacity of ethanolic and aqueous extracts were investigated in human derived liver (HepG2) cells. ROS scavenging activity was assessed using electron paramagnetic spin resonance and quantification of ARE/Nrf2 mediated gene expression. The cultivation was done under different environmental conditions. The processing included fermentation and cooking; postharvest ultraviolet irradiation (UV-C) treatment was also investigated. Overall, S. scabrum extracts showed strong health promoting potential, the highest potential was observed with the fermented extract, which showed a 60% reduction of AFB(1) induced DNA damage and a 38% reduction in FeSO4 induced oxidative stress. The content of total polyphenols, carotenoids and chlorophylls was indeed affected by cultivation and processing. Based on the present in vitro findings consumption of S. scabrum leaves could be further encouraged, preferentially after cooking or fermentation of the plant. KW - aflatoxin B1 KW - African indigenous vegetables KW - anti-genotoxicity KW - anti-oxidant activity KW - cancer chemoprevention KW - Solanaceae Y1 - 2018 U6 - https://doi.org/10.3390/nu10101532 SN - 2072-6643 VL - 10 IS - 10 PB - MDPI CY - Basel ER - TY - JOUR A1 - Pathiraja, Sahani Darschika A1 - Anghileri, Daniela A1 - Burlando, Paolo A1 - Sharma, Ashish A1 - Marshall, Lucy A1 - Moradkhani, Hamid T1 - Time-varying parameter models for catchments with land use change BT - the importance of model structure JF - Hydrology and earth system sciences : HESS N2 - Rapid population and economic growth in Southeast Asia has been accompanied by extensive land use change with consequent impacts on catchment hydrology. Modeling methodologies capable of handling changing land use conditions are therefore becoming ever more important and are receiving increasing attention from hydrologists. A recently developed data-assimilation-based framework that allows model parameters to vary through time in response to signals of change in observations is considered for a medium-sized catchment (2880 km(2)) in northern Vietnam experiencing substantial but gradual land cover change. We investigate the efficacy of the method as well as the importance of the chosen model structure in ensuring the success of a time-varying parameter method. The method was used with two lumped daily conceptual models (HBV and HyMOD) that gave good-quality streamflow predictions during pre-change conditions. Although both time-varying parameter models gave improved streamflow predictions under changed conditions compared to the time-invariant parameter model, persistent biases for low flows were apparent in the HyMOD case. It was found that HyMOD was not suited to representing the modified baseflow conditions, resulting in extreme and unrealistic time-varying parameter estimates. This work shows that the chosen model can be critical for ensuring the time-varying parameter framework successfully models streamflow under changing land cover conditions. It can also be used to determine whether land cover changes (and not just meteorological factors) contribute to the observed hydrologic changes in retrospective studies where the lack of a paired control catchment precludes such an assessment. Y1 - 2018 U6 - https://doi.org/10.5194/hess-22-2903-2018 SN - 1027-5606 SN - 1607-7938 VL - 22 IS - 5 SP - 2903 EP - 2919 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Klopsch, Rebecca A1 - Baldermann, Susanne A1 - Voss, Alexander A1 - Rohn, Sascha A1 - Schreiner, Monika A1 - Neugart, Susanne T1 - Bread enriched with legume microgreens and leaves BT - ontogenetic and baking-driven changes in the profile of secondary plant metabolites JF - Frontiers in chemistry N2 - Flavonoids, carotenoids, and chlorophylls were characterized in microgreens and leaves of pea (Pisum sativum) and lupin (Lupinus angustifolius) as these metabolites change during ontogeny. All metabolites were higher in the leaves for both species. Acylated quercetin and kaempferol sophorotrioses were predominant in pea. Genistein and malonylated chrysoeriol were predominant in lupin. Further, the impact of breadmaking on these metabolites using pea and lupin material of two ontogenetic stages as an added ingredient in wheat-based bread was assessed. In "pea microgreen bread" no decrease of quercetin was found with regard to the non-processed plant material. However kaempferol glycosides showed slight decreases induced by the breadmaking process in "pea microgreen bread" and "pea leaf bread." In "lupin microgreen bread" no decrease of genistein compared to the non-processed plant material was found. Chrysoeriol glycosides showed slight decreases induced by the breadmaking process in "lupin microgreen bread" and "lupin leaf bread." In all breads, carotenoids and chlorophylls were depleted however pheophytin formation was caused. Thus, pea and lupin microgreens and leaves are suitable, natural ingredients for enhancing health-promoting secondary plant metabolites in bread and may even be used to tailor bread for specific consumer health needs. KW - ontogeny KW - microgreen KW - pea KW - lupin KW - flavonoid KW - carotenoid KW - thermal processing of food Y1 - 2018 U6 - https://doi.org/10.3389/fchem.2018.00322 SN - 2296-2646 VL - 6 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Nennewitz, Markus A1 - Thiede, Rasmus C. A1 - Bookhagen, Bodo T1 - Fault activity, tectonic segmentation, and deformation pattern of the western Himalaya on Ma timescales inferred from landscape morphology JF - Lithosphere N2 - The location and magnitude of Himalayan tectonic activity has been debated for decades, and several aspects remain unknown. For instance, the spatial distribution of crustal shortening that ultimately sustains Himalayan topography and the activity of major fault zones remain unknown at Ma timescales. In this study, we address the spatial deformation pattern in the data-scarce western Himalaya. We calculated catchment averaged, normalized river-steepness indices of non-glaciated drainage basins with tributary catchment areas between 5 and 200 km(2) (n = 2138). We analyzed the spatial distribution of the relative change of river steepness both along and across strike to gain information about the regional distribution of differential uplift pattern and relate this to the activity of distinctive fault segments. For our study area, we observe a positive correlation of averaged k(sn) values with long-term exhumation rates derived from previously published thermochronologic datasets combined with thermal modeling as well as with millennial timescale denudation rates based on cosmogenic nuclide dating. Our results indicate three tectono-geomorphic segments with distinctive landscape morphology, structural architecture, and fault geometry along the western Himalaya: Garhwal-Sutlej, Chamba, and Kashmir Himalaya (from east to west). Moreover, our data recognize distinctive fault segments showing varying thrust activity along strike of the Main Frontal Thrust, the Main Boundary Thrust, and in the vicinity of the steep topographic transition between the Lesser and Greater Himalaya. In this region, we relate out-of-sequence deformation along major basement thrust ramps, such as the Munsiari Thrust with deformation along a mid-crustal ramp along the basal decollement. We suggest that during the Quaternary, all major fault zones in the Western Himalaya experienced out-of-sequence faulting and have accommodated some portion of crustal shortening. Y1 - 2018 U6 - https://doi.org/10.1130/L681.1 SN - 1941-8264 SN - 1947-4253 VL - 10 IS - 5 SP - 632 EP - 640 PB - American Institute of Physics CY - Boulder ER - TY - JOUR A1 - Jobe, Jessica Ann Thompson A1 - Li, Tao A1 - Bookhagen, Bodo A1 - Chen, Jie A1 - Burbank, Douglas W. T1 - Dating growth strata and basin fill by combining Al-26/Be-10 burial dating and magnetostratigraphy BT - Constraining active deformation in the Pamir-Tian Shan convergence zone, NW China JF - Lithosphere N2 - Cosmogenic burial dating enables dating of coarse-grained, Pliocene-Pleistocene sedimentary units that are typically difficult to date with traditional methods, such as magnetostratigraphy. In the actively deforming western Tarim Basin in NW China, Pliocene-Pleistocene conglomerates were dated at eight sites, integrating Al-26/Be-10 burial dating with previously published magnetostratigraphic sections. These samples were collected from growth strata on the flanks of growing folds and from sedimentary units beneath active faults to place timing constraints on the initiation of deformation of structures within the basin and on shortening rates on active faults. These new basin-fill and growthstrata ages document the late Neogene and Quaternary growth of the Pamir and Tian Shan orogens between >5 and 1 Ma and delineate the eastward propagation of deformation at rates up to 115 km/m.y. and basinward growth of both mountain belts at rates up to 12 km/m.y. Y1 - 2018 U6 - https://doi.org/10.1130/L727.1 SN - 1941-8264 SN - 1947-4253 VL - 10 IS - 6 SP - 806 EP - 828 PB - American Institute of Physics CY - Boulder ER - TY - JOUR A1 - Heim, Wieland A1 - Eccard, Jana A1 - Bairlein, Franz T1 - Migration phenology determines niche use of East Asian buntings (Emberizidae) during stopover JF - Current zoology N2 - Stopover niche utilization of birds during migration has not gained much attention so far, since the majority of the studies focuses on breeding or wintering areas. However, stopover sites are crucial for migratory birds. They are often used by a multitude of species, which could lead to increased competition. In this work, we investigated niche use of 8 migratory and closely related Emberiza bunting species at a stopover site in Far East Russia, situated on the poorly studied East Asian fly-way. We used bird ringing data to evaluate morphological similarity as well as niche overlap on the trophic, spatial, and temporal dimension. Bill morphology was used as a proxy for their trophic niche. We were able to prove that a majority of the species occupies well-defined stopover niches on at least one of the dimensions. Niche breadth and niche overlap differ between spring and autumn season with higher overlap found during spring. Morphological differences are mostly related to overall size and wing pointedness. The temporal dimension is most important for segregation among the studied species. Furthermore, all species seem to exhibit a rather strict and consistent phenological pattern. Their occurrence at the study site is highly correlated with their geographic origin and the length of their migration route. We assume that buntings are able to use available resources opportunistically during stopover, while trying to follow a precise schedule in order to avoid competition and to ensure individual fitness. KW - bird migration KW - Emberiza KW - habitat use KW - non-breeding KW - phenology KW - stopover Y1 - 2018 U6 - https://doi.org/10.1093/cz/zoy016 SN - 1674-5507 SN - 2396-9814 VL - 64 IS - 6 SP - 681 EP - 692 PB - Oxford Univ. Press CY - Oxford ER - TY - JOUR A1 - Halama, Ralf A1 - Glodny, Johannes A1 - Konrad-Schmolke, Matthias A1 - Sudo, Masafumi T1 - Rb-Sr and in situ Ar-40/Ar-39 dating of exhumation-related shearing and fluid-induced recrystallization in the Sesia zone (Western Alps, Italy) JF - Geosphere N2 - The Sesia zone in the Italian Western Alps is a piece of continental crust that has been subducted to eclogite-facies conditions and records a complex metamorphic history. The exact timing of events and the significance of geochronological information are debated due to the interplay of tectonic, metamorphic, and metasomatic processes. Here we present new geochronological data using Rb-Sr internal mineral isochrons and in situ Ar-40/Ar-39 laser ablation data to provide constraints on the relative importance of fluid-mediated mineral replacement reactions and diffusion for the interpretation of radiogenic isotope signatures, and on the use of these isotopic systems for dating metamorphic and variably deformed rocks. Our study focuses on the shear zone at the contact between two major lithological units of the Sesia zone, the eclogitic micaschists and the gneiss minuti. Metasedimentary rocks of the eclogitic micaschists unit contain phengite with step-like zoning in major element chemistry as evidence for petrologic disequilibrium. Distinct Ar-40/Ar-39 spot ages of relict phengite cores and over-printed rims demonstrate the preservation of individual age domains in the crystals. The eclogitic micaschists also show systematic Sr isotope disequilibria among different phengite populations, so that minimum ages of relict assemblage crystallization can be differentiated from the timing of late increments of deformation. The preservation of these disequilibrium features shows the lack of diffusive re-equilibration and underpins that fluid-assisted dissolution and recrystallization reactions are the main factors controlling the isotope record in these subduction-related metamorphic rocks. Blueschist-facies mylonites record deformation along the major shear zone that separates the eclogitic micaschists from the gneiss minuti. Two Rb-Sr isochrones that comprise several white mica fractions and glaucophane constrain the timing of this deformation and accompanying near-complete blueschist-facies re-equilibration of the Rb-Sr system to 60.1 +/- 0.9 Ma and 60.9 +/- 2.1 Ma, respectively. Overlapping ages in eclogitic micaschists of 60.1 +/- 1.1 (Rb-Sr isochron of sheared matrix assemblage), 58.6 +/- 0.8, and 60.9 +/- 0.4 Ma (white mica Ar-40/Ar-39 inverse isochron ages) support the significance of this age and show that fluid-rock interaction and partial re-equilibration occurred as much as several kilometers away from the shear zone. An earlier equilibration during high-pressure conditions in the eclogitic mica schists is recorded in minimum Rb-Sr ages for relict assemblages (77.2 +/- 0.8 and 72.4 +/- 1.1 Ma) and an Ar-40/Ar-39 inverse isochron age of 75.4 +/- 0.8 Ma for white mica cores, again demonstrating that the two isotope systems provide mutually supporting geochronological information. Local reactivation and recrystallization along the shear zone lasted >15 m.y., as late increments of deformation are recorded in a greenschist-facies mylonite by a Rb-Sr isochron age of 46.5 +/- 0.7 Ma. Y1 - 2018 U6 - https://doi.org/10.1130/GES01521.1 SN - 1553-040X VL - 14 IS - 4 SP - 1425 EP - 1450 PB - American Institute of Physics CY - Boulder ER - TY - GEN A1 - Cheilakou, E. A1 - Tsopelas, N. A1 - Anastasopoulos, A. A1 - Kourousis, D. A1 - Rychkov, Dmitry A1 - Gerhard, Reimund A1 - Frankenstein, B. A1 - Amditis, A. A1 - Damigos, Y. A1 - Bouklas, C. T1 - Strain monitoring system for steel and concrete structures T2 - Procedia Structural Integrity N2 - The present work is part of a collaborative H2020 European funded research project called SENSKIN, that aims to improve Structural Health Monitoring (SHM) for transport infrastructure through the development of an innovative monitoring and management system for bridges based on a novel, inexpensive, skin-like sensor. The integrated SENSKIN technology will be implemented in the case of steel and concrete bridges, and tested, field-evaluated and benchmarked on actual bridge environment against a conventional health monitoring solution developed by Mistras Group Hellas. The main objective of the present work is to implement the autonomous, fully functional strain monitoring system based on commercially available off-the-shelf components, that will be used to accomplish direct comparison between the performance of the innovative SENSKIN sensors and the conventional strain sensors commonly used for structural monitoring of bridges. For this purpose, the mini Structural Monitoring System (mini SMS) of Physical Acoustics Corporation, a comprehensive data acquisition unit designed specifically for long-term unattended operation in outdoor environments, was selected. For the completion of the conventional system, appropriate foil-type strain sensors were selected, driven by special conditioners manufactured by Mistras Group. A comprehensive description of the strain monitoring system and its peripheral components is provided in this paper. For the evaluation of the integrated system’s performance and the effect of various parameters on the long-term behavior of sensors, several test steel pieces instrumented with different strain sensors configurations were prepared and tested in both laboratory and field ambient conditions. Furthermore, loading tests were performed aiming to validate the response of the system in monitoring the strains developed in steel beam elements subject to bending regimes. Representative results obtained from the above experimental tests have been included in this paper as well. KW - Structural health monitoring KW - strain sensors KW - strain gauges KW - bridges KW - steel and concrete structures Y1 - 2018 U6 - https://doi.org/10.1016/j.prostr.2018.09.005 SN - 2452-3216 VL - 10 SP - 25 EP - 32 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Weng, Wei A1 - Lüdeke, Matthias K. B. A1 - Zemp, Delphine Clara A1 - Lakes, Tobia A1 - Kropp, Jürgen T1 - Aerial and surface rivers BT - downwind impacts on water availability from land use changes in Amazonia JF - Hydrology and earth system sciences : HESS N2 - The abundant evapotranspiration provided by the Amazon forests is an important component of the hydrological cycle, both regionally and globally. Since the last century, deforestation and expanding agricultural activities have been changing the ecosystem and its provision of moisture to the atmosphere. However, it remains uncertain how the ongoing land use change will influence rainfall, runoff, and water availability as findings from previous studies differ. Using moisture tracking experiments based on observational data, we provide a spatially detailed analysis recognizing potential teleconnection between source and sink regions of atmospheric moisture. We apply land use scenarios in upwind moisture sources and quantify the corresponding rainfall and runoff changes in downwind moisture sinks. We find spatially varying responses of water regimes to land use changes, which may explain the diverse results from previous studies. Parts of the Peruvian Amazon and western Bolivia are identified as the sink areas most sensitive to land use change in the Amazon and we highlight the current water stress by Amazonian land use change on these areas in terms of the water availability. Furthermore, we also identify the influential source areas where land use change may considerably reduce a given target sink's water reception (from our example of the Ucayali River basin outlet, rainfall by 5–12 % and runoff by 19–50 % according to scenarios). Sensitive sinks and influential sources are therefore suggested as hotspots for achieving sustainable land–water management. Y1 - 2018 U6 - https://doi.org/10.5194/hess-22-911-2018 SN - 1027-5606 SN - 1607-7938 VL - 22 IS - 1 SP - 911 EP - 927 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Prahl, Boris F. A1 - Boettle, Markus A1 - Costa, Luís Fílípe Carvalho da A1 - Kropp, Jürgen A1 - Rybski, Diego T1 - Damage and protection cost curves for coastal floods within the 600 largest European cities JF - Scientific Data N2 - The economic assessment of the impacts of storm surges and sea-level rise in coastal cities requires high-level information on the damage and protection costs associated with varying flood heights. We provide a systematically and consistently calculated dataset of macroscale damage and protection cost curves for the 600 largest European coastal cities opening the perspective for a wide range of applications. Offering the first comprehensive dataset to include the costs of dike protection, we provide the underpinning information to run comparative assessments of costs and benefits of coastal adaptation. Aggregate cost curves for coastal flooding at the city-level are commonly regarded as by-products of impact assessments and are generally not published as a standalone dataset. Hence, our work also aims at initiating a more critical discussion on the availability and derivation of cost curves. Y1 - 2018 U6 - https://doi.org/10.1038/sdata.2018.34 SN - 2052-4463 VL - 5 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Hoferichter, Frances A1 - Laetsch, Alexander A1 - Lazarides, Rebecca A1 - Raufelder, Diana T1 - The big-fish-little-pond effect on the four facets of academic self-concept JF - Frontiers in psychology N2 - The social context plays a decisive role in the formation of the academic self-concept (ASC) and has been widely studied as the big-fish-little-pond-effect (BFLPE). This effect describes that comparable talented students in high-achieving school settings have a lower ASC compared to equally talented students attending low-achieving settings. Past research has focused on students’ domain-specific ASC, while little is known about the relation of achievement-related classroom compositions and the various facets of ASC. Additionally, BFLPE-research has been critiqued to build its theoretical frame on social comparison theory, without providing sufficient empirical support. To address this gap, we analyzed how the single student’s social, criterial, absolute, and individual ASC relate to class-level achievement of 8th graders. Applying Multilevel Structural Equation Modeling (MLSEM) we found that all facets of ASC were significantly related to average-class achievement, while student’s social ASC revealed the strongest associated. The results reveal explicitly that average-class achievement is strongly related to social comparison processes. KW - big-fish-little-pond-effect KW - social KW - criterial KW - absolute KW - individual academic self-concept (SESSKO) KW - high-ability tracked students Y1 - 2018 U6 - https://doi.org/10.3389/fpsyg.2018.01247 SN - 1664-1078 VL - 9 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Hoang, Hoa T. A1 - Mertens, Monique A1 - Wessig, Pablo A1 - Sellrie, Frank A1 - Schenk, Jörg A. A1 - Kumke, Michael Uwe T1 - Antibody Binding at the Liposome-Water Interface BT - a FRET Investigation toward a Liposome-Based Assay JF - ACS Omega N2 - Different signal amplification strategies to improve the detection sensitivity of immunoassays have been applied which utilize enzymatic reactions, nanomaterials, or liposomes. The latter are very attractive materials for signal amplification because liposomes can be loaded with a large amount of signaling molecules, leading to a high sensitivity. In addition, liposomes can be used as a cell-like "bioscaffold" to directly test recognition schemes aiming at cell-related processes. This study demonstrates an easy and fast approach to link the novel hydrophobic optical probe based on [1,3]dioxolo[4,5-f]-[1,3]benzodioxole (DBD dye mm239) with tunable optical properties to hydrophilic recognition elements (e.g., antibodies) using liposomes for signal amplification and as carrier of the hydrophobic dye. The fluorescence properties of mm239 (e.g., long fluorescence lifetime, large Stokes shift, high photostability, and high quantum yield), its high hydrophobicity for efficient anchoring in liposomes, and a maleimide bioreactive group were applied in a unique combination to build a concept for the coupling of antibodies or other protein markers to liposomes (coupling to membranes can be envisaged). The concept further allowed us to avoid multiple dye labeling of the antibody. Here, anti-TAMRA-antibody (DC7-Ab) was attached to the liposomes. In proof-of-concept, steady-state as well as time-resolved fluorescence measurements (e.g., fluorescence depolarization) in combination with single molecule detection (fluorescence correlation spectroscopy, FCS) were used to analyze the binding interaction between DC7-Ab and liposomes as well as the binding of the antigen rhodamine 6G (R6G) to the antibody. Here, the Forster resonance energy transfer (FRET) between mm239 and R6G was monitored. In addition to ensemble FRET data, single-molecule FRET (PIE-FRET) experiments using pulsed interleaved excitation were used to characterize in detail the binding on a single-molecule level to avoid averaging out effects. KW - energy-transfer KW - immunoassay KW - complexes KW - probes Y1 - 2018 U6 - https://doi.org/10.1021/acsomega.8b03016 SN - 2470-1343 VL - 3 IS - 12 SP - 18109 EP - 18116 PB - American Chemical Society CY - Washington ER - TY - JOUR A1 - Kasyanenko, Nina A1 - Unksov, Ivan A1 - Bakulev, Vladimir A1 - Santer, Svetlana T1 - DNA interaction with head-to-tail associates of cationic surfactants prevents formation of compact particles JF - Molecules N2 - Cationic azobenzene-containing surfactants are capable of condensing DNA in solution with formation of nanosized particles that can be employed in gene delivery. The ratio of surfactant/DNA concentration and solution ionic strength determines the result of DNA-surfactant interaction: Complexes with a micelle-like surfactant associates on DNA, which induces DNA shrinkage, DNA precipitation or DNA condensation with the emergence of nanosized particles. UV and fluorescence spectroscopy, low gradient viscometry and flow birefringence methods were employed to investigate DNA-surfactant and surfactant-surfactant interaction at different NaCl concentrations, [NaCl]. It was observed that [NaCl] (or the Debye screening radius) determines the surfactant-surfactant interaction in solutions without DNA. Monomers, micelles and non-micellar associates of azobenzene-containing surfactants with head-to-tail orientation of molecules were distinguished due to the features of their absorption spectra. The novel data enabled us to conclude that exactly the type of associates (together with the concentration of components) determines the result of DNA-surfactant interaction. Predomination of head-to-tail associates at 0.01 M < [NaCl] < 0.5 M induces DNA aggregation and in some cases DNA precipitation. High NaCl concentration (higher than 0.8 M) prevents electrostatic attraction of surfactants to DNA phosphates for complex formation. DAPI dye luminescence in solutions with DNA-surfactant complexes shows that surfactant tails overlap the DNA minor groove. The addition of di- and trivalent metal ions before and after the surfactant binding to DNA indicate that the bound surfactant molecules are located on DNA in islets. KW - azobenzene trimethylammonium bromide KW - head-to-tail surfactant associates KW - DNA KW - ionic strength KW - multivalent ions Y1 - 2018 U6 - https://doi.org/10.3390/molecules23071576 SN - 1420-3049 VL - 23 IS - 7 PB - MDPI CY - Basel ER - TY - JOUR A1 - Reichel, Martin A1 - Rhein, Cosima A1 - Hofmann, Lena M. A1 - Monti, Juliana A1 - Japtok, Lukasz A1 - Langgartner, Dominik A1 - Füchsl, Andrea M. A1 - Kleuser, Burkhard A1 - Gulbins, Erich A1 - Hellerbrand, Claus A1 - Reber, Stefan O. A1 - Kornhuber, Johannes T1 - Chronic Psychosocial Stress in Mice Is Associated With Increased Acid Sphingomyelinase Activity in Liver and Serum and With Hepatic C16:0-Ceramide Accumulation JF - Frontiers in Psychiatry N2 - Chronic psychosocial stress adversely affects human morbidity and is a risk factor for inflammatory disorders, liver diseases, obesity, metabolic syndrome, and major depressive disorder (MDD). In recent studies, we found an association of MDD with an increase of acid sphingomyelinase (ASM) activity. Thus, we asked whether chronic psychosocial stress as a detrimental factor contributing to the emergence of MDD would also affect ASM activity and sphingolipid (SL) metabolism. To induce chronic psychosocial stress in male mice we employed the chronic subordinate colony housing (CSC) paradigm and compared them to non-stressed single housed control (SHC) mice. We determined Asm activity in liver and serum, hepatic SL concentrations as well as hepatic mRNA expression of genes involved in SL metabolism. We found that hepatic Asm activity was increased by 28% (P = 0.006) and secretory Asm activity by 47% (P = 0.002) in stressed mice. C16:0-Cer was increased by 40% (P = 0.008). Gene expression analysis further revealed an increased expression of tumor necrosis factor (TNF)-alpha (P = 0.009) and of several genes involved in SL metabolism (Cers5, P = 0.028; Cers6, P = 0.045; Gba, P = 0.049; Gba2, P = 0.030; Ormdl2, P = 0.034; Smpdl3B; P = 0.013). Our data thus provides first evidence that chronic psychosocial stress, at least in mice, induces alterations in SL metabolism, which in turn might be involved in mediating the adverse health effects of chronic psychosocial stress and peripheral changes occurring in mood disorders. KW - chronic psychosocial stress KW - acid sphingomyelinase KW - ceramide KW - sphingolipid metabolism KW - chronic subordinate colony housing (CSC) KW - liver metabolism Y1 - 2018 U6 - https://doi.org/10.3389/fpsyt.2018.00496 SN - 1664-0640 VL - 9 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Farhan, Muhammad A1 - Rudolph, Tobias A1 - Nöchel, Ulrich A1 - Kratz, Karl A1 - Lendlein, Andreas T1 - Extractable Free Polymer Chains Enhance Actuation Performance of Crystallizable Poly(epsilon-caprolactone) Networks and Enable Self-Healing JF - Polymers N2 - Crosslinking of thermoplastics is a versatile method to create crystallizable polymer networks, which are of high interest for shape-memory actuators. Here, crosslinked poly(epsilon-caprolactone) thermosets (cPCLs) were prepared from linear starting material, whereby the amount of extractable polymer was varied. Fractions of 5-60 wt % of non-crosslinked polymer chains, which freely interpenetrate the crosslinked network, were achieved leading to differences in the resulting phase of the bulk material. This can be described as "sponge-like" with open or closed compartments depending on the amount of interpenetrating polymer. The crosslinking density and the average network chain length remained in a similar range for all network structures, while the theoretical accessible volume for reptation of the free polymer content is affected. This feature could influence or introduce new functions into the material created by thermomechanical treatment. The effect of interpenetrating PCL in cPCLs on the reversible actuation was analyzed by cyclic, uniaxial tensile tests. Here, high reversible strains of up to Delta epsilon = 24% showed the enhanced actuation performance of networks with a non-crosslinked PCL content of 30 wt % resulting from the crystal formation in the phase of the non-crosslinked PCL and co-crystallization with network structures. Additional functionalities are reprogrammability and self-healing capabilities for networks with high contents of extractable polymer enabling reusability and providing durable actuator materials. KW - shape-memory polymer actuators KW - soft actuators KW - self-healing KW - poly(epsilon-caprolactone) KW - thermoplastics Y1 - 2018 U6 - https://doi.org/10.3390/polym10030255 SN - 2073-4360 VL - 10 IS - 3 PB - MDPI CY - Basel ER - TY - JOUR A1 - Willner, Sven N. A1 - Levermann, Anders A1 - Zhao, Fang A1 - Frieler, Katja T1 - Adaptation required to preserve future high-end river flood risk at present levels JF - Science Advances N2 - Earth’s surface temperature will continue to rise for another 20 to 30 years even with the strongest carbon emission reduction currently considered. The associated changes in rainfall patterns can result in an increased flood risk worldwide. We compute the required increase in flood protection to keep high-end fluvial flood risk at present levels. The analysis is carried out worldwide for subnational administrative units. Most of the United States, Central Europe, and Northeast and West Africa, as well as large parts of India and Indonesia, require the strongest adaptation effort. More than half of the United States needs to at least double their protection within the next two decades. Thus, the need for adaptation to increased river flood is a global problem affecting industrialized regions as much as developing countries. Y1 - 2018 U6 - https://doi.org/10.1126/sciadv.aao1914 SN - 2375-2548 VL - 4 IS - 1 PB - American Assoc. for the Advancement of Science CY - Washington ER - TY - JOUR A1 - Chaykovska, Lyubov A1 - Heunisch, Fabian A1 - von Einem, Gina A1 - Hocher, Carl-Friedrich A1 - Tsuprykov, Oleg A1 - Pavkovic, Mira A1 - Sandner, Peter A1 - Kretschmer, Axel A1 - Chu, Chang A1 - Elitok, Saban A1 - Stasch, Johannes-Peter A1 - Hocher, Berthold T1 - Urinary cGMP predicts major adverse renal events in patients with mild renal impairment and/or diabetes mellitus before exposure to contrast medium JF - PLoS one N2 - Background The use of iodine-based contrast agents entails the risk of contrast induced nephropathy (CIN). Radiocontrast agents elicit the third most common cause of nephropathy among hospitalized patients, accounting for 11-12% of cases. CIN is connected with clinically significant consequences, including increased morbidity, prolonged hospitalization, increased risk of complications, potential need for dialysis, and increased mortality rate. The number of in hospital examinations using iodine-based contrast media has been significantly increasing over the last decade. In order to protect patients from possible complications of such examinations, new biomarkers are needed that are able to predict a risk of contrast-induced nephropathy. Urinary and plasma cyclic guanosine monophosphate (cGMP) concentrations are influenced by renal function. Urinary cGMP is primarily of renal cellular origin. Therefore, we assessed if urinary cGMP concentration may predict major adverse renal events (MARE) after contrast media exposure during coronary angiography. Methods Urine samples were prospectively collected from non-randomized consecutive patients with either diabetes or preexisting impaired kidney function receiving intra-arterial contrast medium (CM) for emergent or elective coronary angiography at the Charite Campus Mitte, University Hospital Berlin. Urinary cGMP concentration in spot urine was analyzed 24 hours after CM exposure. Patients were followed up over 90 days for occurrence of death, initiation of dialysis, doubling of plasma creatinine concentration or MARE. Results In total, 289 consecutive patients were included into the study. Urine cGMP/creatinine ratio 24 hours before CM exposure expressed as mean +/- SD was predictive for the need of dialysis (no dialysis: 89.77 +/- 92.85 mu M/mM, n = 277; need for dialysis: 140.3 +/- 82.90 mu M/mM, n = 12, p = 0.008), death (no death during follow-up: 90.60 +/- 92.50 mu M/mM, n = 280; death during follow-up: 169.88 +/- 81.52 mu M/mM, n = 9; p = 0.002), and the composite endpoint MARE (no MARE: 86.02 +/- 93.17 mu M/mM, n = 271; MARE: 146.64 +/- 74.68 mu M/mM, n = 18, p<0.001) during the follow-up of 90 days after contrast media application. cGMP/creatinine ratio stayed significantly increased at values exceeding 120 pM/mM in patients who developed MARE, required dialysis or died. Conclusions Urinary cGMP/creatinine ratio >= 120 mu M/mM before CM exposure is a promising biomarker for the need of dialysis and all-cause mortality 90 days after CM exposure in patients with preexisting renal impairment or diabetes. Y1 - 2018 U6 - https://doi.org/10.1371/journal.pone.0195828 SN - 1932-6203 VL - 13 IS - 4 PB - PLoS CY - San Fransisco ER - TY - JOUR A1 - Lu, Yong-Ping A1 - Reichetzeder, Christoph A1 - Prehn, Cornelia A1 - Yin, Liang-Hong A1 - Yun, Chen A1 - Zeng, Shufei A1 - Chu, Chang A1 - Adamski, Jerzy A1 - Hocher, Berthold T1 - Cord blood Lysophosphatidylcholine 16:1 is positively associated with birth weight JF - Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry and pharmacology N2 - Background/Aims: Impaired birth outcomes, like low birth weight, have consistently been associated with increased disease susceptibility to hypertension in later life. Alterations in the maternal or fetal metabolism might impact on fetal growth and influence birth outcomes. Discerning associations between the maternal and fetal metabolome and surrogate parameters of fetal growth could give new insight into the complex relationship between intrauterine conditions, birth outcomes, and later life disease susceptibility. Methods: Using flow injection tandem mass spectrometry, targeted metabolomics was performed in serum samples obtained from 226 mother/child pairs at delivery. Associations between neonatal birth weight and concentrations of 163 maternal and fetal metabolites were analyzed. Results: After FDR adjustment using the Benjamini-Hochberg procedure lysophosphatidylcholines (LPC) 14:0, 16:1, and 18:1 were strongly positively correlated with birth weight. In a stepwise linear regression model corrected for established confounding factors of birth weight, LPC 16: 1 showed the strongest independent association with birth weight (CI: 93.63 - 168.94; P = 6.94x10(-11)). The association with birth weight was stronger than classical confounding factors such as offspring sex (CI: - 258.81- -61.32; P = 0.002) and maternal smoking during pregnancy (CI: -298.74 - -29.51; P = 0.017). Conclusions: After correction for multiple testing and adjustment for potential confounders, LPC 16:1 showed a very strong and independent association with birth weight. The underlying molecular mechanisms linking fetal LPCs with birth weight need to be addressed in future studies. (c) 2018 The Author(s) Published by S. Karger AG, Basel KW - Metabolomics KW - Lysophosphatidylcholine KW - Birth Weight KW - DOHaD KW - Hypertension KW - Type 2 Diabetes Y1 - 2018 U6 - https://doi.org/10.1159/000487118 SN - 1015-8987 SN - 1421-9778 VL - 45 IS - 2 SP - 614 EP - 624 PB - Karger CY - Basel ER - TY - JOUR A1 - Wang, Guang A1 - Li, Pei-zhi A1 - Zhang, Shi-yao A1 - Zhong, Shan A1 - Chu, Chang A1 - Zeng, Shufei A1 - Yan, Yu A1 - Cheng, Xin A1 - Chuai, Manli A1 - Hocher, Berthold A1 - Yang, Xuesong T1 - Lipopolysaccharides (LPS) Induced Angiogenesis During Chicken Embryogenesis is Abolished by Combined ETA/ETB Receptor Blockade JF - Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry and pharmacology N2 - Background/Aims: Angiogenesis plays a key role during embryonic development. The vascular endothelin (ET) system is involved in the regulation of angiogenesis. Lipopolysaccharides (LPS) could induce angiogenesis. The effects of ET blockers on baseline and LPS-stimulated angiogenesis during embryonic development remain unknown so far. Methods: The blood vessel density (BVD) of chorioallantoic membranes (CAMs), which were treated with saline (control), LPS, and/or BQ123 and the ETB blocker BQ788, were quantified and analyzed using an IPP 6.0 image analysis program. Moreover, the expressions of ET-1, ET-2, ET3, ET receptor A (ETRA), ET receptor B (ETRB) and VEGFR2 mRNA during embryogenesis were analyzed by semi-quantitative RT-PCR. Results: All components of the ET system are detectable during chicken embryogenesis. LPS increased angiogenesis substantially. This process was completely blocked by the treatment of a combination of the ETA receptor blockers-BQ123 and the ETB receptor blocker BQ788. This effect was accompanied by a decrease in ETRA, ETRB, and VEGFR2 gene expression. However, the baseline angiogenesis was not affected by combined ETA/ETB receptor blockade. Conclusion: During chicken embryogenesis, the LPS-stimulated angiogenesis, but not baseline angiogenesis, is sensitive to combined ETA/ETB receptor blockade. KW - Lipopolysaccharides (LPS) KW - Angiogenesis KW - Chicken chorioallantoic membrane (CAM) KW - Endothelin (ET) Y1 - 2018 U6 - https://doi.org/10.1159/000492547 SN - 1015-8987 SN - 1421-9778 VL - 48 IS - 5 SP - 2084 EP - 2090 PB - Karger CY - Basel ER - TY - JOUR A1 - Seyrich, Maximilian A1 - Alirezaeizanjani, Zahra A1 - Beta, Carsten A1 - Stark, Holger T1 - Statistical parameter inference of bacterial swimming strategies JF - New journal of physics : the open-access journal for physics N2 - We provide a detailed stochastic description of the swimming motion of an E. coli bacterium in two dimension, where we resolve tumble events in time. For this purpose, we set up two Langevin equations for the orientation angle and speed dynamics. Calculating moments, distribution and autocorrelation functions from both Langevin equations and matching them to the same quantities determined from data recorded in experiments, we infer the swimming parameters of E. coli. They are the tumble rate lambda, the tumble time r(-1), the swimming speed v(0), the strength of speed fluctuations sigma, the relative height of speed jumps eta, the thermal value for the rotational diffusion coefficient D-0, and the enhanced rotational diffusivity during tumbling D-T. Conditioning the observables on the swimming direction relative to the gradient of a chemoattractant, we infer the chemotaxis strategies of E. coli. We confirm the classical strategy of a lower tumble rate for swimming up the gradient but also a smaller mean tumble angle (angle bias). The latter is realized by shorter tumbles as well as a slower diffusive reorientation. We also find that speed fluctuations are increased by about 30% when swimming up the gradient compared to the reversed direction. KW - E.coli KW - run and tumble KW - chemotaxis KW - stochastic processes KW - bacterial swimming strategies KW - parameter inference Y1 - 2018 U6 - https://doi.org/10.1088/1367-2630/aae72c SN - 1367-2630 VL - 20 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Goswami, Bedartha A1 - Boers, Niklas A1 - Rheinwalt, Aljoscha A1 - Marwan, Norbert A1 - Heitzig, Jobst A1 - Breitenbach, Sebastian Franz Martin A1 - Kurths, Jürgen T1 - Abrupt transitions in time series with uncertainties JF - Nature Communications N2 - Identifying abrupt transitions is a key question in various disciplines. Existing transition detection methods, however, do not rigorously account for time series uncertainties, often neglecting them altogether or assuming them to be independent and qualitatively similar. Here, we introduce a novel approach suited to handle uncertainties by representing the time series as a time-ordered sequence of probability density functions. We show how to detect abrupt transitions in such a sequence using the community structure of networks representing probabilities of recurrence. Using our approach, we detect transitions in global stock indices related to well-known periods of politico-economic volatility. We further uncover transitions in the El Niño-Southern Oscillation which coincide with periods of phase locking with the Pacific Decadal Oscillation. Finally, we provide for the first time an ‘uncertainty-aware’ framework which validates the hypothesis that ice-rafting events in the North Atlantic during the Holocene were synchronous with a weakened Asian summer monsoon. Y1 - 2018 U6 - https://doi.org/10.1038/s41467-017-02456-6 SN - 2041-1723 VL - 9 PB - Nature Publ. Group CY - London ER - TY - GEN A1 - Chen, Pan A1 - Bornhorst, Julia A1 - Neely, M. Diana A1 - Avila, Daiana Silva T1 - Mechanisms and Disease Pathogenesis Underlying Metal-Induced Oxidative Stress T2 - Oxidative Medicine and Cellular Longevity Y1 - 2018 U6 - https://doi.org/10.1155/2018/7612172 SN - 1942-0900 SN - 1942-0994 PB - Hindawi CY - London ER - TY - THES A1 - Massué, Cyriac ED - Proeller, Isabella ED - Silvia von, Steinsdorff ED - Sommermann, Karl-Peter ED - Capitant, David ED - Larat, Fabrice T1 - Valoriser les synergies franco-allemandes dans l’innovation au service de la transition énergétique. Les leçons du Programme Inter Carnot Fraunhofer (PICF) T2 - MEGA-Schriftenreihe N2 - Face à l’urgence environnementale, l’innovation dans le domaine des nouvelles technologies de l’énergie (NTE) constitue un défi primordial. Les NTE constituent un marché concurrentiel en plein expansion, où s’affrontent dès à présent les acteurs de l’innovation internationale. La R&D énergétique représente donc pour l’Europe un défi multiple : Il s’agit de développer les technologies qui nous permettrons de réduire nos émissions de gaz à effet de serre et nos dépendances énergétiques. L’innovation produite devra également garantir la place de l’industrie européenne à la pointe du marché des NTE dans un contexte hautement compétitif. La collaboration franco-allemande en matière de R&D énergétique recèle ici un potentiel d’innovation disruptive particulièrement important, grâce à des paysages de R&D fortement complémentaires. Les programmes bilatéraux constituent un outil prometteur pour la valorisation des synergies inexploitées. En permettant la mise en place de partenariats franco-allemands restreints, autour de thématiques précises, ils constituent en effet un outil complémentaire aux programmes européens. Le Programme Inter Carnot-Fraunhofer (PICF) constitue un exemple abouti de programme bilatéral ayant permis la concrétisation de collaborations mutuellement bénéfiques dans le domaine des NTE, grâce à la mise au point d’une procédure harmonisée. Néanmoins, l’analyse du PICF montre également que les programmes bilatéraux franco-allemands devront prévoir la possibilité de financements-relai afin de pérenniser les échanges. Dans le contexte particulier des NTE, une extension aux projets de démonstration ainsi qu’un ciblage des sujets porteurs sur la base d’un comité consultatif scientifique indépendant paraissent indispensables. Ces efforts franco-allemands pourront servir de modèle à l’innovation de rupture basée sur la valorisation des synergies intra-européennes. N2 - Im Kontext steigender Umweltbelastungen stellen Innovationen auf dem Gebiet der Energietechnologien eine zentrale Herausforderung dar. Dieser rapide wachsende Markt ist schon heute der Schauplatz eines erbitterten internationalen Wettbewerbs. Somit stellt die Energieforschung für Europa eine mehrfache Herausforderung dar: Die entwickelten Technologien sollen dabei helfen unsere Treibhausgasemissionen zu verringern und gleichzeitig unsere Abhängigkeiten beschränken. Zudem soll die produzierte Innovation dazu beitragen, den Industriestandort Europa als Spitzenreiter auf dem weltweit umkämpften Markt der Energietechnologien zu positionieren. Dank der sich stark ergänzenden nationalen Forschungslandschaften, birgt die deutsch-französische Energieforschungskooperation ein besonders hohes Potenzial. Bilaterale Forschungsprogramme sind ein vielversprechendes Werkzeug um ungenutzte Synergien zu fördern. Indem gezielt deutsch-französische Partnerschaften um bestimmte Fragestellungen angesprochen werden, vervollständigen bilaterale Programme die europäischen Förderwerkzeuge. Das Programm Inter Carnot Fraunhofer (PICF) ist ein ausgereiftes Beispiel eines solchen Programms. Dank harmonisierter Prozeduren, konnten gegenseitig vorteilhafte Kooperationsprojekte im Energiebereich verwirklicht werden. Die Untersuchung des PICF zeigt allerdings auch, dass bilaterale Förderprogramme die Möglichkeit einer Anschlussfinanzierung beinhalten müssen, um die angegangene Zusammenarbeit zu erhalten und zur Vollendung zu bringen. Im Kontext der Energieforschung sollten ebenfalls Demonstrationsprojekte in die Zielgruppe der bilateralen Förderprogramme aufgenommen werden. Ausschreibungen sollten thematisch eingegrenzt werden, fußend auf den Empfehlungen eines unabhängigen wissenschaftlichen Gremiums. Die deutsch-französischen Bestrebungen werden als Beispiel dafür dienen, wie innereuropäische Synergien zu bahnbrechender Innovation geführt werden können. N2 - In the context of increasing environmental concerns, innovation in the field of energy technologies represents a central bottleneck. This rapidly growing market is already the scene of fierce international competition. Energy research therefore represents a multiple challenge for Europe: The technologies developed should help reducing greenhouse gas emissions, while at the same time limiting our dependencies. In addition, the innovation produced should help positioning industrial Europe as a frontrunner in the globally competitive energy technology market. Thanks to the highly complementary national research landscapes, the Franco-German energy research cooperation has particularly high potential. Bilateral research programs are a promising tool for promoting untapped synergies. By addressing bilateral Franco-German partnerships on specific issues, bilateral programs complete the European funding tools. The Inter Carnot Fraunhofer (PICF) program is a mature example of such a program. Thanks to harmonized procedures, mutually beneficial cooperation projects in the energy sector could be realized. The PICF investigation also shows, however, that bilateral funding programs must include the possibility of follow-up funding in order to maintain the cooperation and bring it to completion. In the context of energy research, demonstration projects should also be included in the target group of the bilateral funding programs. Calls for proposals should be thematically limited based on the recommendations of an independent scientific body. Franco-German endeavors could then serve as a model of how intra-European synergies can be transformed into groundbreaking innovation. T3 - MEGA-Schriftenreihe - 4 KW - transition énergétique KW - franco-allemand KW - synergies KW - Energiewende KW - deutsch-französisch KW - Synergien KW - energy revolution KW - franco-german KW - synergies Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-491892 SN - 2701-391X IS - 4 PB - Universitätsverlag Potsdam CY - Potsdam ER - TY - JOUR A1 - Atsawawaranunt, Kamolphat A1 - Comas-Bru, Laia A1 - Mozhdehi, Sahar Amirnezhad A1 - Deininger, Michael A1 - Harrison, Sandy P. A1 - Baker, Andy A1 - Boyd, Meighan A1 - Kaushal, Nikita A1 - Ahmad, Syed Masood A1 - Brahim, Yassine Ait A1 - Arienzo, Monica A1 - Bajo, Petra A1 - Braun, Kerstin A1 - Burstyn, Yuval A1 - Chawchai, Sakonvan A1 - Duan, Wuhui A1 - Hatvani, Istvan Gabor A1 - Hu, Jun A1 - Kern, Zoltan A1 - Labuhn, Inga A1 - Lachniet, Matthew A1 - Lechleitner, Franziska A. A1 - Lorrey, Andrew A1 - Perez-Mejias, Carlos A1 - Pickering, Robyn A1 - Scroxton, Nick A1 - Atkinson, Tim A1 - Ayalon, Avner A1 - Baldini, James A1 - Bar-Matthews, Miriam A1 - Pablo Bernal, Juan A1 - Breitenbach, Sebastian Franz Martin A1 - Boch, Ronny A1 - Borsato, Andrea A1 - Cai, Yanjun A1 - Carolin, Stacy A1 - Cheng, Hai A1 - Columbu, Andrea A1 - Couchoud, Isabelle A1 - Cruz, Francisco A1 - Demeny, Attila A1 - Dominguez-Villar, David A1 - Dragusin, Virgil A1 - Drysdale, Russell A1 - Ersek, Vasile A1 - Finne, Martin A1 - Fleitmann, Dominik A1 - Fohlmeister, Jens Bernd A1 - Frappier, Amy A1 - Genty, Dominique A1 - Holzkamper, Steffen A1 - Hopley, Philip A1 - Kathayat, Gayatri A1 - Keenan-Jones, Duncan A1 - Koltai, Gabriella A1 - Luetscher, Marc A1 - Li, Ting-Yong A1 - Lone, Mahjoor Ahmad A1 - Markowska, Monika A1 - Mattey, Dave A1 - McDermott, Frank A1 - Moreno, Ana A1 - Moseley, Gina A1 - Nehme, Carole A1 - Novello, Valdir F. A1 - Psomiadis, David A1 - Rehfeld, Kira A1 - Ruan, Jiaoyang A1 - Sekhon, Natasha A1 - Sha, Lijuan A1 - Sholz, Denis A1 - Shopov, Yavor A1 - Smith, Andrew A1 - Strikis, Nicolas A1 - Treble, Pauline A1 - Unal-Imer, Ezgi A1 - Vaks, Anton A1 - Vansteenberge, Stef A1 - Veiga-Pires, Cristina A1 - Voarintsoa, Ny Riavo A1 - Wang, Xianfeng A1 - Wong, Corinne A1 - Wortham, Barbara A1 - Wurtzel, Jennifer A1 - Zong, Baoyun T1 - The SISAL database BT - a global resource to document oxygen and carbon isotope records from speleothems JF - Earth System Science Data N2 - Stable isotope records from speleothems provide information on past climate changes, most particularly information that can be used to reconstruct past changes in precipitation and atmospheric circulation. These records are increasingly being used to provide "out-of-sample" evaluations of isotope-enabled climate models. SISAL (Speleothem Isotope Synthesis and Analysis) is an international working group of the Past Global Changes (PAGES) project. The working group aims to provide a comprehensive compilation of speleothem isotope records for climate reconstruction and model evaluation. The SISAL database contains data for individual speleothems, grouped by cave system. Stable isotopes of oxygen and carbon (delta O-18, delta C-13) measurements are referenced by distance from the top or bottom of the speleothem. Additional tables provide information on dating, including information on the dates used to construct the original age model and sufficient information to assess the quality of each data set and to erect a standardized chronology across different speleothems. The metadata table provides location information, information on the full range of measurements carried out on each speleothem and information on the cave system that is relevant to the interpretation of the records, as well as citations for both publications and archived data. Y1 - 2018 U6 - https://doi.org/10.5194/essd-10-1687-2018 SN - 1866-3508 SN - 1866-3516 VL - 10 IS - 3 SP - 1687 EP - 1713 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Mahata, Khadak Singh A1 - Rupakheti, Maheswar A1 - Panday, Arnico Kumar A1 - Bhardwaj, Piyush A1 - Naja, Manish A1 - Singh, Ashish A1 - Mues, Andrea A1 - Cristofanelli, Paolo A1 - Pudasainee, Deepak A1 - Bonasoni, Paolo A1 - Lawrence, Mark T1 - Observation and analysis of spatiotemporal characteristics of surface ozone and carbon monoxide at multiple sites in the Kathmandu Valley, Nepal JF - Atmosheric chemistry and physics N2 - It was lower during the monsoon due to rainfall, which reduces open burning activities within the valley and in the surrounding regions and thus reduces sources of CO. The meteorology of the valley also played a key role in determining the CO mixing ratios. The wind is calm and easterly in the shallow mixing layer, with a mixing layer height (MLH) of about 250 m, during the night and early morning. The MLH slowly increases after sunrise and decreases in the afternoon. As a result, the westerly wind becomes active and reduces the mixing ratio during the daytime. Furthermore, there was evidence of an increase in the O-3 mixing ratios in the Kathmandu Valley as a result of emissions in the Indo-Gangetic Plain (IGP) region, particularly from biomass burning including agroresidue burning. A top-down estimate of the CO emission flux was made by using the CO mixing ratio and mixing layer height measured at Bode. The estimated annual CO flux at Bode was 4.9 mu g M-2 s(-1), which is 2-14 times higher than that in widely used emission inventory databases (EDGAR HTAP, REAS and INTEX-B). This difference in CO flux between Bode and other emission databases likely arises from large uncertainties in both the top-down and bottom-up approaches to estimating the emission flux. The O-3 mixing ratio was found to be highest during the premonsoon season at all sites, while the timing of the seasonal minimum varied across the sites. The daily maximum 8 h average O-3 exceeded the WHO recommended guideline of 50 ppb on more days at the hilltop station of Nagarkot (159 out of 357 days) than at the urban valley bottom sites of Paknajol (132 out of 354 days) and Bode (102 out of 353 days), presumably due to the influence of free-tropospheric air at the high-altitude site (as also indicated by Putero et al., 2015, for the Paknajol site in the Kathmandu Valley) as well as to titration of O-3 by fresh NOx emissions near the urban sites. More than 78 % of the exceedance days were during the premonsoon period at all sites. The high O-3 mixing ratio observed during the premonsoon period is of a concern for human health and ecosystems, including agroecosystems in the Kathmandu Valley and surrounding regions. Y1 - 2018 U6 - https://doi.org/10.5194/acp-18-14113-2018 SN - 1680-7316 SN - 1680-7324 VL - 18 IS - 19 SP - 14113 EP - 14132 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Lawrence, Mark A1 - Schäfer, Stefan A1 - Muri, Helene A1 - Scott, Vivian A1 - Oschlies, Andreas A1 - Vaughan, Naomi E. A1 - Boucher, Olivier A1 - Schmidt, Hauke A1 - Haywood, Jim A1 - Scheffran, Jürgen T1 - Evaluating climate geoengineering proposals in the context of the Paris Agreement temperature goals JF - Nature Communications N2 - Current mitigation efforts and existing future commitments are inadequate to accomplish the Paris Agreement temperature goals. In light of this, research and debate are intensifying on the possibilities of additionally employing proposed climate geoengineering technologies, either through atmospheric carbon dioxide removal or farther-reaching interventions altering the Earth’s radiative energy budget. Although research indicates that several techniques may eventually have the physical potential to contribute to limiting climate change, all are in early stages of development, involve substantial uncertainties and risks, and raise ethical and governance dilemmas. Based on present knowledge, climate geoengineering techniques cannot be relied on to significantly contribute to meeting the Paris Agreement temperature goals. KW - Atmospheric chemistry KW - Atmospheric dynamics KW - Atmospheric science KW - Climate change KW - Environmental impact Y1 - 2018 U6 - https://doi.org/10.1038/s41467-018-05938-3 SN - 2041-1723 VL - 9 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - El-Ashker, Said A1 - Chaabene, Helmi A1 - Negra, Yassine A1 - Prieske, Olaf A1 - Granacher, Urs T1 - Cardio-Respiratory Endurance Responses Following a Simulated 3 x 3 Minutes Amateur Boxing Contest in Elite Level Boxers JF - Sports N2 - This study aimed at examining physiological responses (i.e., oxygen uptake [VO2] and heart rate [HR]) to a semi-contact 3 x 3-min format, amateur boxing combat simulation in elite level male boxers. Eleven boxers aged 21.4 +/- 2.1 years (body height 173.4 +/- 3.7, body mass 74.9 +/- 8.6 kg, body fat 12.1 +/- 1.9, training experience 5.7 +/- 1.3 years) volunteered to participate in this study. They performed a maximal graded aerobic test on a motor-driven treadmill to determine maximum oxygen uptake (VO2max), oxygen uptake (VO2AT) and heart rate (HRAT) at the anaerobic threshold, and maximal heart rate (HRmax). Additionally, VO2 and peak HR (HRpeak) were recorded following each boxing round. Results showed no significant differences between VO2max values derived from the treadmill running test and VO2 outcomes of the simulated boxing contest (p > 0.05, d = 0.02 to 0.39). However, HRmax and HRpeak recorded from the treadmill running test and the simulated amateur boxing contest, respectively, displayed significant differences regardless of the boxing round (p < 0.01, d = 1.60 to 3.00). In terms of VO2 outcomes during the simulated contest, no significant between-round differences were observed (p = 0.19, d = 0.17 to 0.73). Irrespective of the boxing round, the recorded VO2 was >90% of the VO2max. Likewise, HRpeak observed across the three boxing rounds were >= 90% of the HRmax. In summary, the simulated 3 x 3-min amateur boxing contest is highly demanding from a physiological standpoint. Thus, coaches are advised to systematically monitor internal training load for instance through rating of perceived exertion to optimize training-related adaptations and to prevent boxers from overreaching and/or overtraining. KW - aerobic metabolism KW - physiological strain KW - striking combat sports KW - elite athletes Y1 - 2018 U6 - https://doi.org/10.3390/sports6040119 SN - 2075-4663 VL - 6 IS - 4 PB - MDPI CY - Basel ER - TY - JOUR A1 - Weyrich, Alexandra A1 - Lenz, Dorina A1 - Fickel, Jörns T1 - Environmental Change-Dependent Inherited Epigenetic Response JF - GENES N2 - Epigenetic modifications are a mechanism conveying environmental information to subsequent generations via parental germ lines. Research on epigenetic responses to environmental changes in wild mammals has been widely neglected, as well as studies that compare responses to changes in different environmental factors. Here, we focused on the transmission of DNA methylation changes to naive male offspring after paternal exposure to either diet (~40% less protein) or temperature increase (10 °C increased temperature). Because both experiments focused on the liver as the main metabolic and thermoregulation organ, we were able to decipher if epigenetic changes differed in response to different environmental changes. Reduced representation bisulfite sequencing (RRBS) revealed differentially methylated regions (DMRs) in annotated genomic regions in sons sired before (control) and after the fathers’ treatments. We detected both a highly specific epigenetic response dependent on the environmental factor that had changed that was reflected in genes involved in specific metabolic pathways, and a more general response to changes in outer stimuli reflected by epigenetic modifications in a small subset of genes shared between both responses. Our results indicated that fathers prepared their offspring for specific environmental changes by paternally inherited epigenetic modifications, suggesting a strong paternal contribution to adaptive processes. KW - DNA methylation KW - exposure KW - wild mammal species KW - inheritance KW - plasticity KW - adaptation KW - RRBS Y1 - 2018 U6 - https://doi.org/10.3390/genes10010004 SN - 2073-4425 VL - 10 IS - 1 PB - MDPI CY - Basel ER - TY - JOUR A1 - Francke, Till A1 - Förster, Saskia A1 - Brosinsky, Arlena A1 - Sommerer, Erik A1 - Lopez-Tarazonl, Jose Andres A1 - Güntner, Andreas A1 - Batalla, Ramon J. A1 - Bronstert, Axel T1 - Water and sediment fluxes in Mediterranean mountainous regions BT - comprehensive dataset for hydro-sedimentological analyses and modelling in a mesoscale catchment (River Isabena, NE Spain) JF - Earth System Science Data N2 - A comprehensive hydro-sedimentological dataset for the Isabena catchment, northeastern (NE) Spain, for the period 2010-2018 is presented to analyse water and sediment fluxes in a Mediterranean mesoscale catchment. The dataset includes rainfall data from 12 rain gauges distributed within the study area complemented by meteorological data of 12 official meteo-stations. It comprises discharge data derived from water stage measurements as well as suspended sediment concentrations (SSCs) at six gauging stations of the River Isabena and its sub-catchments. Soil spectroscopic data from 351 suspended sediment samples and 152 soil samples were collected to characterize sediment source regions and sediment properties via fingerprinting analyses. The Isabena catchment (445 km(2)) is located in the southern central Pyrenees ranging from 450 m to 2720 m a.s.l.; together with a pronounced topography, this leads to distinct temperature and precipitation gradients. The River Isabena shows marked discharge variations and high sediment yields causing severe siltation problems in the downstream Barasona Reservoir. The main sediment source is badland areas located on Eocene marls that are well connected to the river network. The dataset features a comprehensive set of variables in a high spatial and temporal resolution suitable for the advanced process understanding of water and sediment fluxes, their origin and connectivity and sediment budgeting and for the evaluation and further development of hydro-sedimentological models in Mediterranean mesoscale mountainous catchments. Y1 - 2018 U6 - https://doi.org/10.5194/essd-10-1063-2018 SN - 1866-3508 SN - 1866-3516 VL - 10 IS - 2 SP - 1063 EP - 1075 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Galbete, Cecilia A1 - Kröger, Janine A1 - Jannasch, Franziska A1 - Iqbal, Khalid A1 - Schwingshackl, Lukas A1 - Schwedhelm, Carolina A1 - Weikert, Cornelia A1 - Boeing, Heiner A1 - Schulze, Matthias Bernd T1 - Nordic diet, Mediterranean diet, and the risk of chronic diseases BT - the EPIC-Potsdam study JF - BMC Medicine N2 - Background: The Mediterranean Diet (MedDiet) has been acknowledged as a healthy diet. However, its relation with risk of major chronic diseases in non-Mediterranean countries is inconclusive. The Nordic diet is proposed as an alternative across Northern Europe, although its associations with the risk of chronic diseases remain controversial. We aimed to investigate the association between the Nordic diet and the MedDiet with the risk of chronic disease (type 2 diabetes (T2D), myocardial infarction (MI), stroke, and cancer) in the EPIC-Potsdam cohort. Methods: The EPIC-Potsdam cohort recruited 27,548 participants between 1994 and 1998. After exclusion of prevalent cases, we evaluated baseline adherence to a score reflecting the Nordic diet and two MedDiet scores (tMDS, reflecting the traditional MedDiet score, and the MedPyr score, reflecting the MedDiet Pyramid). Cox regression models were applied to examine the association between the diet scores and the incidence of major chronic diseases. Results: During a follow-up of 10.6 years, 1376 cases of T2D, 312 of MI, 321 of stroke, and 1618 of cancer were identified. The Nordic diet showed a statistically non-significant inverse association with incidence of MI in the overall population and of stroke in men. Adherence to the MedDiet was associated with lower incidence of T2D (HR per 1 SD 0.93, 95% CI 0.88-0.98 for the tMDS score and 0.92, 0.87-0.97 for the MedPyr score). In women, the MedPyr score was also inversely associated with MI. No association was observed for any of the scores with cancer. Conclusions: In the EPIC-Potsdam cohort, the Nordic diet showed a possible beneficial effect on MI in the overall population and for stroke in men, while both scores reflecting the MedDiet conferred lower risk of T2D in the overall population and of MI in women. KW - Mediterranean diet KW - Nordic diet KW - regional diets KW - chronic diseases KW - diabetes KW - myocardial infarction KW - stroke KW - cancer KW - EPIC-Potsdam study KW - longitudinal analysis Y1 - 2018 U6 - https://doi.org/10.1186/s12916-018-1082-y SN - 1741-7015 VL - 16 PB - BMC CY - London ER - TY - JOUR A1 - John, Cathleen A1 - Grune, Jana A1 - Ott, Christiane A1 - Nowotny, Kerstin A1 - Deubel, Stefanie A1 - Kühne, Arne A1 - Schubert, Carola A1 - Kintscher, Ulrich A1 - Regitz-Zagrosek, Vera A1 - Grune, Tilman T1 - Sex Differences in Cardiac Mitochondria in the New Zealand Obese Mouse JF - Frontiers in Endocrinology N2 - Background: Obesity is a risk factor for diseases including type 2 diabetes mellitus (T2DM) and cardiovascular disorders. Diabetes itself contributes to cardiac damage. Thus, studying cardiovascular events and establishing therapeutic intervention in the period of type T2DM onset and manifestation are of highest importance. Mitochondrial dysfunction is one of the pathophysiological mechanisms leading to impaired cardiac function. Methods: An adequate animal model for studying pathophysiology of T2DM is the New Zealand Obese (NZO) mouse. These mice were maintained on a high-fat diet (HFD) without carbohydrates for 13 weeks followed by 4 week HFD with carbohydrates. NZO mice developed severe obesity and only male mice developed manifest T2DM. We determined cardiac phenotypes and mitochondrial function as well as cardiomyocyte signaling in this model. Results: The development of an obese phenotype and T2DM in male mice was accompanied by an impaired systolic function as judged by echocardiography and MyH6/7 expression. Moreover, the mitochondrial function only in male NZO hearts was significantly reduced and ERK1/2 and AMPK protein levels were altered. Conclusions: This is the first report demonstrating that the cardiac phenotype in male diabetic NZO mice is associated with impaired cardiac energy function and signaling events. KW - NZO KW - heart KW - obesity KW - mitochondrial function KW - echocardiography KW - systolic function Y1 - 2018 U6 - https://doi.org/10.3389/fendo.2018.00732 SN - 1664-2392 VL - 9 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Martins, Renata F. A1 - Schmidt, Anke A1 - Lenz, Dorina A1 - Wilting, Andreas A1 - Fickel, Jörns T1 - Historical biogeography of Rusa unicolor and R-timorensis BT - Historical biogeography of Rusa unicolor and R. timorensis JF - Ecology and evolution N2 - In this study we compared the phylogeographic patterns of two Rusa species, Rusa unicolor and Rusa timorensis, in order to understand what drove and maintained differentiation between these two geographically and genetically close species and investigated the route of introduction of individuals to the islands outside of the Sunda Shelf. We analyzed full mitogenomes from 56 archival samples from the distribution areas of the two species and 18 microsatellite loci in a subset of 16 individuals to generate the phylogeographic patterns of both species. Bayesian inference with fossil calibration was used to estimate the age of each species and major divergence events. Our results indicated that the split between the two species took place during the Pleistocene, similar to 1.8Mya, possibly driven by adaptations of R. timorensis to the drier climate found on Java compared to the other islands of Sundaland. Although both markers identified two well-differentiated clades, there was a largely discrepant pattern between mitochondrial and nuclear markers. While nDNA separated the individuals into the two species, largely in agreement with their museum label, mtDNA revealed that all R. timorensis sampled to the east of the Sunda shelf carried haplotypes from R. unicolor and one Rusa unicolor from South Sumatra carried a R. timorensis haplotype. Our results show that hybridization occurred between these two sister species in Sundaland during the Late Pleistocene and resulted in human-mediated introduction of hybrid descendants in all islands outside Sundaland. KW - Cervidae KW - human introduction KW - hybridization KW - Phylogeography KW - Sundaland Y1 - 2017 U6 - https://doi.org/10.1002/ece3.3754 SN - 2045-7758 VL - 8 IS - 3 SP - 1465 EP - 1479 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Ambarli, Hüseyin A1 - Mengüllüoğlu, Deniz A1 - Fickel, Jörns A1 - Förster, Daniel W. T1 - Hotel AMANO Grand Central of brown bears in southwest Asia JF - PeerJ N2 - Genetic studies of the Eurasian brown bear (Ursus arctos) have so far focused on populations from Europe and North America, although the largest distribution area of brown bears is in Asia. In this study, we reveal population genetic parameters for the brown bear population inhabiting the Grand Kackar Mountains (GKM) in the north east of Turkey, western Lesser Caucasus. Using both hair (N = 147) and tissue samples (N = 7) collected between 2008 and 2014, we found substantial levels of genetic variation (10 microsatellite loci). Bear samples (hair) taken from rubbing trees worked better for genotyping than those from power poles, regardless of the year collected. Genotyping also revealed that bears moved between habitat patches, despite ongoing massive habitat alterations and the creation of large water reservoirs. This population has the potential to serve as a genetic reserve for future reintroduction in the Middle East. Due to the importance of the GKM population for on-going and future conservation actions, the impacts of habitat alterations in the region ought to be minimized; e.g., by establishing green bridges or corridors over reservoirs and major roads to maintain habitat connectivity and gene flow among populations in the Lesser Caucasus. KW - Ursus arctos KW - Microsatellite KW - Conservation KW - Anatolia KW - Isolation KW - Source population KW - Noninvasive sampling KW - Rubbing tree KW - Turkey Y1 - 2018 U6 - https://doi.org/10.7717/peerj.5660 SN - 2167-8359 VL - 6 PB - PeerJ Inc. CY - London ER - TY - JOUR A1 - Weyrich, Alexandra A1 - Jeschek, Marie A1 - Schrapers, Katharina T. A1 - Lenz, Dorina A1 - Chung, Tzu Hung A1 - Ruebensam, Kathrin A1 - Yasar, Sermin A1 - Schneemann, Markus A1 - Ortmann, Sylvia A1 - Jewgenow, Katarina A1 - Fickel, Jörns T1 - Diet changes alter paternally inherited epigenetic pattern in male Wild guinea pigs JF - Environmental Epigenetics N2 - Epigenetic modifications, of which DNA methylation is the most stable, are a mechanism conveying environmental information to subsequent generations via parental germ lines. The paternal contribution to adaptive processes in the offspring might be crucial, but has been widely neglected in comparison to the maternal one. To address the paternal impact on the offspring’s adaptability to changes in diet composition, we investigated if low protein diet (LPD) in F0 males caused epigenetic alterations in their subsequently sired sons. We therefore fed F0 male Wild guinea pigs with a diet lowered in protein content (LPD) and investigated DNA methylation in sons sired before and after their father’s LPD treatment in both, liver and testis tissues. Our results point to a ‘heritable epigenetic response’ of the sons to the fathers’ dietary change. Because we detected methylation changes also in the testis tissue, they are likely to be transmitted to the F2 generation. Gene-network analyses of differentially methylated genes in liver identified main metabolic pathways indicating a metabolic reprogramming (‘metabolic shift’). Epigenetic mechanisms, allowing an immediate and inherited adaptation may thus be important for the survival of species in the context of a persistently changing environment, such as climate change. KW - DNA methylation KW - exposure KW - wild mammal species KW - inheritance KW - plasticity KW - adaptation Y1 - 2018 U6 - https://doi.org/10.1093/eep/dvy011 SN - 2058-5888 VL - 4 IS - 2 PB - Oxford Univ. Press CY - Oxford ER - TY - JOUR A1 - Ritter, Christoph A1 - Ángeles Burgos, María A1 - Böckmann, Christine A1 - Mateos, David A1 - Lisok, Justyna A1 - Markowicz, Krzysztof M. A1 - Moroni, Beatrice A1 - Cappelletti, David A1 - Udisti, Roberto A1 - Maturilli, Marion A1 - Neuber, Roland T1 - Microphysical properties and radiative impact of an intense biomass burning aerosol event measured over Ny-angstrom lesund, Spitsbergen in July 2015 JF - Tellus - Series B, Chemical and Physical Meteorology N2 - In this work, an evaluation of an intense biomass burning event observed over Ny-angstrom lesund (Spitsbergen, European Arctic) in July 2015 is presented. Data from the multi-wavelengths Raman-lidar KARL, a sun photometer and radiosonde measurements are used to derive some microphysical properties of the biomass burning aerosol as size distribution, refractive index and single scattering albedo at different relative humidities. Predominantly particles in the accumulation mode have been found with a bi-modal distribution and dominance of the smaller mode. Above 80% relative humidity, hygroscopic growth in terms of an increase of particle diameter and a slight decrease of the index of refraction (real and imaginary part) has been found. Values of the single scattering albedo around 0.9 both at 355nm and 532nm indicate some absorption by the aerosol. Values of the lidar ratio are around 26sr for 355nm and around 50sr for 532nm, almost independent of the relative humidity. Further, data from the photometer and surface radiation values from the local baseline surface radiation network (BSRN) have been applied to derive the radiative impact of the biomass burning event purely from observational data by comparison with a clear background day. We found a strong cooling for the visible radiation and a slight warming in the infra-red. The net aerosol forcing, derived by comparison with a clear background day purely from observational data, obtained a value of -95 W/m(2) per unit AOD500. KW - aerosol KW - lidar KW - retrieval of aerosol properties KW - radiative forcing KW - Arctic aerosol Y1 - 2018 U6 - https://doi.org/10.1080/16000889.2018.1539618 SN - 1600-0889 VL - 70 PB - Routledge, Taylor & Francis Group CY - Abingdon ER - TY - JOUR A1 - Coch, Caroline A1 - Lamoureux, Scott F. A1 - Knoblauch, Christian A1 - Eischeid, Isabell A1 - Fritz, Michael A1 - Obu, Jaroslav A1 - Lantuit, Hugues T1 - Summer rainfall dissolved organic carbon, solute, and sediment fluxes in a small Arctic coastal catchment on Herschel Island (Yukon Territory, Canada) JF - Artic science N2 - Coastal ecosystems in the Arctic are affected by climate change. As summer rainfall frequency and intensity are projected to increase in the future, more organic matter, nutrients and sediment could bemobilized and transported into the coastal nearshore zones. However, knowledge of current processes and future changes is limited. We investigated streamflow dynamics and the impacts of summer rainfall on lateral fluxes in a small coastal catchment on Herschel Island in the western Canadian Arctic. For the summer monitoring periods of 2014-2016, mean dissolved organic matter flux over 17 days amounted to 82.7 +/- 30.7 kg km(-2) and mean total dissolved solids flux to 5252 +/- 1224 kg km(-2). Flux of suspended sediment was 7245 kg km(-2) in 2015, and 369 kg km(-2) in 2016. We found that 2.0% of suspended sediment was composed of particulate organic carbon. Data and hysteresis analysis suggest a limited supply of sediments; their interannual variability is most likely caused by short-lived localized disturbances. In contrast, our results imply that dissolved organic carbon is widely available throughout the catchment and exhibits positive linear relationship with runoff. We hypothesize that increased projected rainfall in the future will result in a similar increase of dissolved organic carbon fluxes. KW - permafrost KW - hydrology KW - lateral fluxes KW - hysteresis KW - climate change Y1 - 2018 U6 - https://doi.org/10.1139/as-2018-0010 SN - 2368-7460 VL - 4 IS - 4 SP - 750 EP - 780 PB - Canadian science publishing CY - Ottawa ER - TY - JOUR A1 - Heinrich, Ingo A1 - Balanzategui, Daniel A1 - Bens, Oliver A1 - Blasch, Gerald A1 - Blume, Theresa A1 - Boettcher, Falk A1 - Borg, Erik A1 - Brademann, Brian A1 - Brauer, Achim A1 - Conrad, Christopher A1 - Dietze, Elisabeth A1 - Dräger, Nadine A1 - Fiener, Peter A1 - Gerke, Horst H. A1 - Güntner, Andreas A1 - Heine, Iris A1 - Helle, Gerhard A1 - Herbrich, Marcus A1 - Harfenmeister, Katharina A1 - Heussner, Karl-Uwe A1 - Hohmann, Christian A1 - Itzerott, Sibylle A1 - Jurasinski, Gerald A1 - Kaiser, Knut A1 - Kappler, Christoph A1 - Koebsch, Franziska A1 - Liebner, Susanne A1 - Lischeid, Gunnar A1 - Merz, Bruno A1 - Missling, Klaus Dieter A1 - Morgner, Markus A1 - Pinkerneil, Sylvia A1 - Plessen, Birgit A1 - Raab, Thomas A1 - Ruhtz, Thomas A1 - Sachs, Torsten A1 - Sommer, Michael A1 - Spengler, Daniel A1 - Stender, Vivien A1 - Stüve, Peter A1 - Wilken, Florian T1 - Interdisciplinary Geo-ecological Research across Time Scales in the Northeast German Lowland Observatory (TERENO-NE) JF - Vadose zone journal N2 - The Northeast German Lowland Observatory (TERENO-NE) was established to investigate the regional impact of climate and land use change. TERENO-NE focuses on the Northeast German lowlands, for which a high vulnerability has been determined due to increasing temperatures and decreasing amounts of precipitation projected for the coming decades. To facilitate in-depth evaluations of the effects of climate and land use changes and to separate the effects of natural and anthropogenic drivers in the region, six sites were chosen for comprehensive monitoring. In addition, at selected sites, geoarchives were used to substantially extend the instrumental records back in time. It is this combination of diverse disciplines working across different time scales that makes the observatory TERENO-NE a unique observation platform. We provide information about the general characteristics of the observatory and its six monitoring sites and present examples of interdisciplinary research activities at some of these sites. We also illustrate how monitoring improves process understanding, how remote sensing techniques are fine-tuned by the most comprehensive ground-truthing site DEMMIN, how soil erosion dynamics have evolved, how greenhouse gas monitoring of rewetted peatlands can reveal unexpected mechanisms, and how proxy data provides a long-term perspective of current ongoing changes. Y1 - 2018 U6 - https://doi.org/10.2136/vzj2018.06.0116 SN - 1539-1663 VL - 17 IS - 1 PB - Soil Science Society of America CY - Madison ER - TY - JOUR A1 - Metin, Ayse Duha A1 - Nguyen Viet Dung, A1 - Schröter, Kai A1 - Guse, Björn A1 - Apel, Heiko A1 - Kreibich, Heidi A1 - Vorogushyn, Sergiy A1 - Merz, Bruno T1 - How do changes along the risk chain affect flood risk? JF - Natural hazards and earth system sciences N2 - Flood risk is impacted by a range of physical and socio-economic processes. Hence, the quantification of flood risk ideally considers the complete flood risk chain, from atmospheric processes through catchment and river system processes to damage mechanisms in the affected areas. Although it is generally accepted that a multitude of changes along the risk chain can occur and impact flood risk, there is a lack of knowledge of how and to what extent changes in influencing factors propagate through the chain and finally affect flood risk. To fill this gap, we present a comprehensive sensitivity analysis which considers changes in all risk components, i.e. changes in climate, catchment, river system, land use, assets, and vulnerability. The application of this framework to the mesoscale Mulde catchment in Germany shows that flood risk can vary dramatically as a consequence of plausible change scenarios. It further reveals that components that have not received much attention, such as changes in dike systems or in vulnerability, may outweigh changes in often investigated components, such as climate. Although the specific results are conditional on the case study area and the selected assumptions, they emphasize the need for a broader consideration of potential drivers of change in a comprehensive way. Hence, our approach contributes to a better understanding of how the different risk components influence the overall flood risk. Y1 - 2018 U6 - https://doi.org/10.5194/nhess-18-3089-2018 SN - 1561-8633 SN - 1684-9981 VL - 18 IS - 11 SP - 3089 EP - 3108 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Duy, Nguyen Le A1 - Heidbüchel, Ingo A1 - Meyer, Hanno A1 - Merz, Bruno A1 - Apel, Heiko T1 - What controls the stable isotope composition of precipitation in the Mekong Delta? BT - a model-based statistical approach JF - Hydrology and earth system sciences : HESS N2 - This study analyzes the influence of local and regional climatic factors on the stable isotopic composition of rainfall in the Vietnamese Mekong Delta (VMD) as part of the Asian monsoon region. It is based on 1.5 years of weekly rainfall samples. In the first step, the isotopic composition of the samples is analyzed by local meteoric water lines (LMWLs) and single-factor linear correlations. Additionally, the contribution of several regional and local factors is quantified by multiple linear regression (MLR) of all possible factor combinations and by relative importance analysis. This approach is novel for the interpretation of isotopic records and enables an objective quantification of the explained variance in isotopic records for individual factors. In this study, the local factors are extracted from local climate records, while the regional factors are derived from atmospheric backward trajectories of water particles. The regional factors, i.e., precipitation, temperature, relative humidity and the length of backward trajectories, are combined with equivalent local climatic parameters to explain the response variables delta O-18, delta H-2, and d-excess of precipitation at the station of measurement. The results indicate that (i) MLR can better explain the isotopic variation in precipitation (R-2 = 0.8) compared to single-factor linear regression (R-2 = 0.3); (ii) the isotopic variation in precipitation is controlled dominantly by regional moisture regimes (similar to 70 %) compared to local climatic conditions (similar to 30 %); (iii) the most important climatic parameter during the rainy season is the precipitation amount along the trajectories of air mass movement; (iv) the influence of local precipitation amount and temperature is not sig-nificant during the rainy season, unlike the regional precipitation amount effect; (v) secondary fractionation processes (e.g., sub-cloud evaporation) can be identified through the d-excess and take place mainly in the dry season, either locally for delta O-18 and delta H-2, or along the air mass trajectories for d-excess. The analysis shows that regional and local factors vary in importance over the seasons and that the source regions and transport pathways, and particularly the climatic conditions along the pathways, have a large influence on the isotopic composition of rainfall. Although the general results have been reported qualitatively in previous studies (proving the validity of the approach), the proposed method provides quantitative estimates of the controlling factors, both for the whole data set and for distinct seasons. Therefore, it is argued that the approach constitutes an advancement in the statistical analysis of isotopic records in rainfall that can supplement or precede more complex studies utilizing atmospheric models. Due to its relative simplicity, the method can be easily transferred to other regions, or extended with other factors. The results illustrate that the interpretation of the isotopic composition of precipitation as a recorder of local climatic conditions, as for example performed for paleorecords of water isotopes, may not be adequate in the southern part of the Indochinese Peninsula, and likely neither in other regions affected by monsoon processes. However, the presented approach could open a pathway towards better and seasonally differentiated reconstruction of paleoclimates based on isotopic records. Y1 - 2018 U6 - https://doi.org/10.5194/hess-22-1239-2018 SN - 1027-5606 SN - 1607-7938 VL - 22 IS - 2 SP - 1239 EP - 1262 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Schöpa, Anne A1 - Chao, Wei-An A1 - Lipovsky, Bradley P. A1 - Hovius, Niels A1 - White, Robert S. A1 - Green, Robert G. A1 - Turowski, Jens M. T1 - Dynamics of the Askja caldera July 2014 landslide, Iceland, from seismic signal analysis BT - precursor, motion and aftermath JF - Earth surface dynamics N2 - Landslide hazard motivates the need for a deeper understanding of the events that occur before, during, and after catastrophic slope failures. Due to the destructive nature of such events, in situ observation is often difficult or impossible. Here, we use data from a network of 58 seismic stations to characterise a large landslide at the Askja caldera, Iceland, on 21 July 2014. High data quality and extensive network coverage allow us to analyse both long- and short-period signals associated with the landslide, and thereby obtain information about its triggering, initiation, timing, and propagation. At long periods, a landslide force history inversion shows that the Askja landslide was a single, large event starting at the SE corner of the caldera lake at 23:24:05 UTC and propagating to the NW in the following 2 min The bulk sliding mass was 7-16 x 10(10) kg, equivalent to a collapsed volume of 35-80 x 10(6) m(3). The sliding mass was displaced downslope by 1260 +/- 250 m. At short periods, a seismic tremor was observed for 30 min before the landslide. The tremor is approximately harmonic with a fundamental frequency of 2.3 Hz and shows time-dependent changes of its frequency content. We attribute the seismic tremor to stick-slip motion along the landslide failure plane. Accelerating motion leading up to the catastrophic slope failure culminated in an aseismic quiescent period for 2 min before the landslide. We propose that precursory seismic signals may be useful in landslide early-warning systems. The 8 h after the main landslide failure are characterised by smaller slope failures originating from the destabilised caldera wall decaying in frequency and magnitude. We introduce the term "afterslides" for this subsequent, declining slope activity after a large landslide. Y1 - 2018 U6 - https://doi.org/10.5194/esurf-6-467-2018 SN - 2196-6311 SN - 2196-632X VL - 6 IS - 2 SP - 467 EP - 485 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Wojcik, Robin A1 - Donhauser, Johanna A1 - Frey, Beat W. A1 - Holm, Stine A1 - Holland, Alexandra A1 - Anesio, Alexandre M. A1 - Pearce, David A. A1 - Malard, Lucie A1 - Wagner, Dirk A1 - Benning, Liane G. T1 - Linkages between geochemistry and microbiology in a proglacial terrain in the High Arctic JF - Annals of glaciology N2 - Proglacial environments are ideal for studying the development of soils through the changes of rocks exposed by glacier retreat to weathering and microbial processes. Carbon (C) and nitrogen (N) contents as well as soil pH and soil elemental compositions are thought to be dominant factors structuring the bacterial, archaeal and fungal communities in the early stages of soil ecosystem formation. However, the functional linkages between C and N contents, soil composition and microbial community structures remain poorly understood. Here, we describe a multivariate analysis of geochemical properties and associated microbial community structures between a moraine and a glaciofluvial outwash in the proglacial area of a High Arctic glacier (Longyearbreen, Svalbard). Our results reveal distinct differences in developmental stages and heterogeneity between the moraine and the glaciofluvial outwash. We observed significant relationships between C and N contents, delta C-13(org) and delta N-15 isotopic ratios, weathering and microbial abundance and community structures. We suggest that the observed differences in microbial and geochemical parameters between the moraine and the glaciofluvial outwash are primarily a result of geomorphological variations of the proglacial terrain. KW - biogeochemistry KW - glacial geomorphology KW - glacier chemistry KW - microbiology KW - processes and landforms of glacial erosion Y1 - 2018 U6 - https://doi.org/10.1017/aog.2019.1 SN - 0260-3055 SN - 1727-5644 VL - 59 IS - 77 SP - 95 EP - 110 PB - Cambridge Univ. Press CY - Cambridge ER - TY - JOUR A1 - Genderjahn, Steffi A1 - Alawi, Mashal A1 - Mangelsdorf, Kai A1 - Horn, Fabian A1 - Wagner, Dirk T1 - Desiccation- and saline-solerant bacteria and archaea in kalahari an sediments JF - Frontiers in microbiology N2 - More than 41% of the Earth’s land area is covered by permanent or seasonally arid dryland ecosystems. Global development and human activity have led to an increase in aridity, resulting in ecosystem degradation and desertification around the world. The objective of the present work was to investigate and compare the microbial community structure and geochemical characteristics of two geographically distinct saline pan sediments in the Kalahari Desert of southern Africa. Our data suggest that these microbial communities have been shaped by geochemical drivers, including water content, salinity, and the supply of organic matter. Using Illumina 16S rRNA gene sequencing, this study provides new insights into the diversity of bacteria and archaea in semi-arid, saline, and low-carbon environments. Many of the observed taxa are halophilic and adapted to water-limiting conditions. The analysis reveals a high relative abundance of halophilic archaea (primarily Halobacteria), and the bacterial diversity is marked by an abundance of Gemmatimonadetes and spore-forming Firmicutes. In the deeper, anoxic layers, candidate division MSBL1, and acetogenic bacteria (Acetothermia) are abundant. Together, the taxonomic information and geochemical data suggest that acetogenesis could be a prevalent form of metabolism in the deep layers of a saline pan. KW - saline pan KW - Kalahari KW - Halobacteria KW - Gemmatimonadetes KW - Firmicutes Y1 - 2018 U6 - https://doi.org/10.3389/fmicb.2018.02082 SN - 1664-302X VL - 9 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Jongejans, Loeka Laura A1 - Strauss, Jens A1 - Lenz, Josefine A1 - Peterse, Francien A1 - Mangelsdorf, Kai A1 - Fuchs, Matthias A1 - Grosse, Guido T1 - Organic matter characteristics in yedoma and thermokarst deposits on Baldwin Peninsula, west Alaska JF - Biogeosciences N2 - As Arctic warming continues and permafrost thaws, more soil and sedimentary organic matter (OM) will be decomposed in northern high latitudes. Still, uncertainties remain in the quality of the OM and the size of the organic carbon (OC) pools stored in different deposit types of permafrost landscapes. This study presents OM data from deep permafrost and lake deposits on the Baldwin Peninsula which is located in the southern portion of the continuous permafrost zone in west Alaska. Sediment samples from yedoma and drained thermokarst lake basin (DTLB) deposits as well as thermokarst lake sediments were analyzed for cryostratigraphical and biogeochemical parameters and their lipid biomarker composition to identify the below-ground OC pool size and OM quality of ice-rich permafrost on the Baldwin Peninsula. We provide the first detailed characterization of yedoma deposits on Baldwin Peninsula. We show that three-quarters of soil OC in the frozen deposits of the study region (total of 68 Mt) is stored in DTLB deposits (52 Mt) and one-quarter in the frozen yedoma deposits (16 Mt). The lake sediments contain a relatively small OC pool (4 Mt), but have the highest volumetric OC content (93 kgm(-3)) compared to the DTLB (35 kgm(-3)) and yedoma deposits (8 kgm(-3)), largely due to differences in the ground ice content. The biomarker analysis indicates that the OM in both yedoma and DTLB deposits is mainly of terrestrial origin. Nevertheless, the relatively high carbon preference index of plant leaf waxes in combination with a lack of a degradation trend with depth in the yedoma deposits indi-cates that OM stored in yedoma is less degraded than that stored in DTLB deposits. This suggests that OM in yedoma has a higher potential for decomposition upon thaw, despite the relatively small size of this pool. These findings show that the use of lipid biomarker analysis is valuable in the assessment of the potential future greenhouse gas emissions from thawing permafrost, especially because this area, close to the discontinuous permafrost boundary, is projected to thaw substantially within the 21st century. Y1 - 2018 U6 - https://doi.org/10.5194/bg-15-6033-2018 SN - 1726-4170 SN - 1726-4189 VL - 15 IS - 20 SP - 6033 EP - 6048 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - de Abreu e Lima, Francisco Anastacio A1 - Willmitzer, Lothar A1 - Nikoloski, Zoran T1 - Classification-driven framework to predict maize hybrid field performance from metabolic profiles of young parental roots JF - PLoS one N2 - Maize (Zea mays L.) is a staple food whose production relies on seed stocks that largely comprise hybrid varieties. Therefore, knowledge about the molecular determinants of hybrid performance (HP) in the field can be used to devise better performing hybrids to address the demands for sustainable increase in yield. Here, we propose and test a classification-driven framework that uses metabolic profiles from in vitro grown young roots of parental lines from the Dent x Flint maize heterotic pattern to predict field HP. We identify parental analytes that best predict the metabolic inheritance patterns in 328 hybrids. We then demonstrate that these analytes are also predictive of field HP (0.64 >= r >= 0.79) and discriminate hybrids of good performance (accuracy of 87.50%). Therefore, our approach provides a cost-effective solution for hybrid selection programs. Y1 - 2018 U6 - https://doi.org/10.1371/journal.pone.0196038 SN - 1932-6203 VL - 13 IS - 4 PB - PLoS CY - San Fransisco ER - TY - JOUR A1 - Jing, Miao A1 - Hesse, Falk A1 - Kumar, Rohini A1 - Wang, Wenqing A1 - Fischer, Thomas A1 - Walther, Marc A1 - Zink, Matthias A1 - Zech, Alraune A1 - Samaniego, Luis A1 - Kolditz, Olaf A1 - Attinger, Sabine T1 - Improved regional-scale groundwater representation by the coupling of the mesoscale Hydrologic Model (mHM v5.7) to the groundwater model OpenGeoSys (OGS) JF - Geoscientific model development : an interactive open access journal of the European Geosciences Union N2 - Most large-scale hydrologic models fall short in reproducing groundwater head dynamics and simulating transport process due to their oversimplified representation of groundwater flow. In this study, we aim to extend the applicability of the mesoscale Hydrologic Model (mHM v5.7) to subsurface hydrology by coupling it with the porous media simulator OpenGeoSys (OGS). The two models are one-way coupled through model interfaces GIS2FEM and RIV2FEM, by which the grid-based fluxes of groundwater recharge and the river-groundwater exchange generated by mHM are converted to fixed-flux boundary conditions of the groundwater model OGS. Specifically, the grid-based vertical reservoirs in mHM are completely preserved for the estimation of land-surface fluxes, while OGS acts as a plug-in to the original mHM modeling framework for groundwater flow and transport modeling. The applicability of the coupled model (mHM-OGS v1.0) is evaluated by a case study in the central European mesoscale river basin - Nagelstedt. Different time steps, i.e., daily in mHM and monthly in OGS, are used to account for fast surface flow and slow groundwater flow. Model calibration is conducted following a two-step procedure using discharge for mHM and long-term mean of groundwater head measurements for OGS. Based on the model summary statistics, namely the Nash-Sutcliffe model efficiency (NSE), the mean absolute error (MAE), and the interquartile range error (QRE), the coupled model is able to satisfactorily represent the dynamics of discharge and groundwater heads at several locations across the study basin. Our exemplary calculations show that the one-way coupled model can take advantage of the spatially explicit modeling capabilities of surface and groundwater hydrologic models and provide an adequate representation of the spatiotemporal behaviors of groundwater storage and heads, thus making it a valuable tool for addressing water resources and management problems. Y1 - 2018 U6 - https://doi.org/10.5194/gmd-11-1989-2018 SN - 1991-959X SN - 1991-9603 VL - 11 IS - 5 SP - 1989 EP - 2007 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Schwahn, Kevin A1 - Nikoloski, Zoran T1 - Data reduction approaches for dissecting transcriptional effects on metabolism JF - Frontiers in plant science N2 - The availability of high-throughput data from transcriptomics and metabolomics technologies provides the opportunity to characterize the transcriptional effects on metabolism. Here we propose and evaluate two computational approaches rooted in data reduction techniques to identify and categorize transcriptional effects on metabolism by combining data on gene expression and metabolite levels. The approaches determine the partial correlation between two metabolite data profiles upon control of given principal components extracted from transcriptomics data profiles. Therefore, they allow us to investigate both data types with all features simultaneously without doing preselection of genes. The proposed approaches allow us to categorize the relation between pairs of metabolites as being under transcriptional or post-transcriptional regulation. The resulting classification is compared to existing literature and accumulated evidence about regulatory mechanism of reactions and pathways in the cases of Escherichia coil, Saccharomycies cerevisiae, and Arabidopsis thaliana. KW - E. coil KW - S. cerevisiae KW - A. thaliana KW - partial correlation KW - principal component analysis KW - metabolomics KW - data reduction KW - regulation Y1 - 2018 U6 - https://doi.org/10.3389/fpls.2018.00538 SN - 1664-462X VL - 9 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Küken, Anika A1 - Sommer, Frederik A1 - Yaneva-Roder, Liliya A1 - Mackinder, Luke C. M. A1 - Hoehne, Melanie A1 - Geimer, Stefan A1 - Jonikas, Martin C. A1 - Schroda, Michael A1 - Stitt, Mark A1 - Nikoloski, Zoran A1 - Mettler-Altmann, Tabea T1 - Effects of microcompartmentation on flux distribution and metabolic pools in Chlamydomonas reinhardtii chloroplasts JF - eLife N2 - Cells and organelles are not homogeneous but include microcompartments that alter the spatiotemporal characteristics of cellular processes. The effects of microcompartmentation on metabolic pathways are however difficult to study experimentally. The pyrenoid is a microcompartment that is essential for a carbon concentrating mechanism (CCM) that improves the photosynthetic performance of eukaryotic algae. Using Chlamydomonas reinhardtii, we obtained experimental data on photosynthesis, metabolites, and proteins in CCM-induced and CCM-suppressed cells. We then employed a computational strategy to estimate how fluxes through the Calvin-Benson cycle are compartmented between the pyrenoid and the stroma. Our model predicts that ribulose-1,5-bisphosphate (RuBP), the substrate of Rubisco, and 3-phosphoglycerate (3PGA), its product, diffuse in and out of the pyrenoid, respectively, with higher fluxes in CCM-induced cells. It also indicates that there is no major diffusional barrier to metabolic flux between the pyrenoid and stroma. Our computational approach represents a stepping stone to understanding microcompartmentalized CCM in other organisms. Y1 - 2018 U6 - https://doi.org/10.7554/eLife.37960 SN - 2050-084X VL - 7 PB - eLife Sciences Publications CY - Cambridge ER -