TY - JOUR A1 - Bürger, Gerd A1 - Heistermann, Maik T1 - Shallow and deep learning of extreme rainfall events from convective atmospheres JF - Natural hazards and earth system sciences : NHESS N2 - Our subject is a new catalogue of radar-based heavy rainfall events (CatRaRE) over Germany and how it relates to the concurrent atmospheric circulation. We classify daily ERA5 fields of convective indices according to CatRaRE, using an array of 13 statistical methods, consisting of 4 conventional (“shallow”) and 9 more recent deep machine learning (DL) algorithms; the classifiers are then applied to corresponding fields of simulated present and future atmospheres from the Coordinated Regional Climate Downscaling Experiment (CORDEX) project. The inherent uncertainty of the DL results from the stochastic nature of their optimization is addressed by employing an ensemble approach using 20 runs for each network. The shallow random forest method performs best with an equitable threat score (ETS) around 0.52, followed by the DL networks ALL-CNN and ResNet with an ETS near 0.48. Their success can be understood as a result of conceptual simplicity and parametric parsimony, which obviously best fits the relatively simple classification task. It is found that, on summer days, CatRaRE convective atmospheres over Germany occur with a probability of about 0.5. This probability is projected to increase, regardless of method, both in ERA5-reanalyzed and CORDEX-simulated atmospheres: for the historical period we find a centennial increase of about 0.2 and for the future period one of slightly below 0.1. Y1 - 2023 U6 - https://doi.org/10.5194/nhess-23-3065-2023 SN - 1561-8633 SN - 1684-9981 VL - 23 IS - 9 SP - 3065 EP - 3077 PB - European Geophysical Society CY - Katlenburg-Lindau ER - TY - JOUR A1 - Kurths, Jürgen A1 - Agarwal, Ankit A1 - Shukla, Roopam A1 - Marwan, Norbert A1 - Maheswaran, Rathinasamy A1 - Caesar, Levke A1 - Krishnan, Raghavan A1 - Merz, Bruno T1 - Unravelling the spatial diversity of Indian precipitation teleconnections via a non-linear multi-scale approach JF - Nonlinear processes in geophysics N2 - A better understanding of precipitation dynamics in the Indian subcontinent is required since India's society depends heavily on reliable monsoon forecasts. We introduce a non-linear, multiscale approach, based on wavelets and event synchronization, for unravelling teleconnection influences on precipitation. We consider those climate patterns with the highest relevance for Indian precipitation. Our results suggest significant influences which are not well captured by only the wavelet coherence analysis, the state-of-the-art method in understanding linkages at multiple timescales. We find substantial variation across India and across timescales. In particular, El Niño–Southern Oscillation (ENSO) and the Indian Ocean Dipole (IOD) mainly influence precipitation in the south-east at interannual and decadal scales, respectively, whereas the North Atlantic Oscillation (NAO) has a strong connection to precipitation, particularly in the northern regions. The effect of the Pacific Decadal Oscillation (PDO) stretches across the whole country, whereas the Atlantic Multidecadal Oscillation (AMO) influences precipitation particularly in the central arid and semi-arid regions. The proposed method provides a powerful approach for capturing the dynamics of precipitation and, hence, helps improve precipitation forecasting. Y1 - 2019 U6 - https://doi.org/10.5194/npg-26-251-2019 SN - 1023-5809 SN - 1607-7946 VL - 26 IS - 3 SP - 251 EP - 266 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Topuz, Birol T1 - Quranic verses shaping Djem and false perception of Alevism in the society JF - International journal of islamic thought : IJIT N2 - It is seen that the Alevi-Sunni relations are mostly shaped by the stereotyped perceptions of the two groups about each other. In particular, the fact that Alevism is a closed society due to the pressure they have experienced throughout history has prevented them from being perceived correctly. As such, it is seen that there are many misconceptions about Alevis and their rituals that do not match the reality but are accepted as correct by the society. Due to the lack of communication that could not be developed through this "unknown" in the historical process, Alevi-Sunni relations have always been open to manipulations. As a matter of fact, it is seen that Alevis' relations with Islam, the Djem ceremonies that form the basis of Alevism, and the content of Djem ceremonies have always remained a mystery to Sunnis. Unfortunately, this misperception also reflected negatively on the communication between the two groups. As it is known, if stereotypes arise when there is incorrect information about the target group, the best way to correct them is to create common contact environments that will bring individuals to the right information. Here in this article, the unknown Djem ritual and especially the Qur'anic verses that they refer to during the Djem ceremonies are discussed. KW - words KW - Alevis KW - Sunnis KW - Djem KW - verses of Quran in Djem Y1 - 2022 U6 - https://doi.org/10.24035/ijit.21.2022.223 SN - 2232-1314 SN - 2289-6023 VL - 21 SP - 35 EP - 45 PB - University of Kebansaan, Malaysia CY - Kuala Lumpur ER - TY - JOUR A1 - Heinrich, Ingo A1 - Balanzategui, Daniel A1 - Bens, Oliver A1 - Blasch, Gerald A1 - Blume, Theresa A1 - Boettcher, Falk A1 - Borg, Erik A1 - Brademann, Brian A1 - Brauer, Achim A1 - Conrad, Christopher A1 - Dietze, Elisabeth A1 - Dräger, Nadine A1 - Fiener, Peter A1 - Gerke, Horst H. A1 - Güntner, Andreas A1 - Heine, Iris A1 - Helle, Gerhard A1 - Herbrich, Marcus A1 - Harfenmeister, Katharina A1 - Heussner, Karl-Uwe A1 - Hohmann, Christian A1 - Itzerott, Sibylle A1 - Jurasinski, Gerald A1 - Kaiser, Knut A1 - Kappler, Christoph A1 - Koebsch, Franziska A1 - Liebner, Susanne A1 - Lischeid, Gunnar A1 - Merz, Bruno A1 - Missling, Klaus Dieter A1 - Morgner, Markus A1 - Pinkerneil, Sylvia A1 - Plessen, Birgit A1 - Raab, Thomas A1 - Ruhtz, Thomas A1 - Sachs, Torsten A1 - Sommer, Michael A1 - Spengler, Daniel A1 - Stender, Vivien A1 - Stüve, Peter A1 - Wilken, Florian T1 - Interdisciplinary Geo-ecological Research across Time Scales in the Northeast German Lowland Observatory (TERENO-NE) JF - Vadose zone journal N2 - The Northeast German Lowland Observatory (TERENO-NE) was established to investigate the regional impact of climate and land use change. TERENO-NE focuses on the Northeast German lowlands, for which a high vulnerability has been determined due to increasing temperatures and decreasing amounts of precipitation projected for the coming decades. To facilitate in-depth evaluations of the effects of climate and land use changes and to separate the effects of natural and anthropogenic drivers in the region, six sites were chosen for comprehensive monitoring. In addition, at selected sites, geoarchives were used to substantially extend the instrumental records back in time. It is this combination of diverse disciplines working across different time scales that makes the observatory TERENO-NE a unique observation platform. We provide information about the general characteristics of the observatory and its six monitoring sites and present examples of interdisciplinary research activities at some of these sites. We also illustrate how monitoring improves process understanding, how remote sensing techniques are fine-tuned by the most comprehensive ground-truthing site DEMMIN, how soil erosion dynamics have evolved, how greenhouse gas monitoring of rewetted peatlands can reveal unexpected mechanisms, and how proxy data provides a long-term perspective of current ongoing changes. Y1 - 2018 U6 - https://doi.org/10.2136/vzj2018.06.0116 SN - 1539-1663 VL - 17 IS - 1 PB - Soil Science Society of America CY - Madison ER - TY - JOUR A1 - Metin, Ayse Duha A1 - Nguyen Viet Dung, A1 - Schröter, Kai A1 - Guse, Björn A1 - Apel, Heiko A1 - Kreibich, Heidi A1 - Vorogushyn, Sergiy A1 - Merz, Bruno T1 - How do changes along the risk chain affect flood risk? JF - Natural hazards and earth system sciences N2 - Flood risk is impacted by a range of physical and socio-economic processes. Hence, the quantification of flood risk ideally considers the complete flood risk chain, from atmospheric processes through catchment and river system processes to damage mechanisms in the affected areas. Although it is generally accepted that a multitude of changes along the risk chain can occur and impact flood risk, there is a lack of knowledge of how and to what extent changes in influencing factors propagate through the chain and finally affect flood risk. To fill this gap, we present a comprehensive sensitivity analysis which considers changes in all risk components, i.e. changes in climate, catchment, river system, land use, assets, and vulnerability. The application of this framework to the mesoscale Mulde catchment in Germany shows that flood risk can vary dramatically as a consequence of plausible change scenarios. It further reveals that components that have not received much attention, such as changes in dike systems or in vulnerability, may outweigh changes in often investigated components, such as climate. Although the specific results are conditional on the case study area and the selected assumptions, they emphasize the need for a broader consideration of potential drivers of change in a comprehensive way. Hence, our approach contributes to a better understanding of how the different risk components influence the overall flood risk. Y1 - 2018 U6 - https://doi.org/10.5194/nhess-18-3089-2018 SN - 1561-8633 SN - 1684-9981 VL - 18 IS - 11 SP - 3089 EP - 3108 PB - Copernicus CY - Göttingen ER - TY - JOUR A1 - Metin, Ayse Duha A1 - Dung, Nguyen Viet A1 - Schröter, Kai A1 - Vorogushyn, Sergiy A1 - Guse, Björn A1 - Kreibich, Heidi A1 - Merz, Bruno T1 - The role of spatial dependence for large-scale flood risk estimation JF - Natural hazards and earth system sciences N2 - Flood risk assessments are typically based on scenarios which assume homogeneous return periods of flood peaks throughout the catchment. This assumption is unrealistic for real flood events and may bias risk estimates for specific return periods. We investigate how three assumptions about the spatial dependence affect risk estimates: (i) spatially homogeneous scenarios (complete dependence), (ii) spatially heterogeneous scenarios (modelled dependence) and (iii) spatially heterogeneous but uncorrelated scenarios (complete independence). To this end, the model chain RFM (regional flood model) is applied to the Elbe catchment in Germany, accounting for the spatio-temporal dynamics of all flood generation processes, from the rainfall through catchment and river system processes to damage mechanisms. Different assumptions about the spatial dependence do not influence the expected annual damage (EAD); however, they bias the risk curve, i.e. the cumulative distribution function of damage. The widespread assumption of complete dependence strongly overestimates flood damage of the order of 100% for return periods larger than approximately 200 years. On the other hand, for small and medium floods with return periods smaller than approximately 50 years, damage is underestimated. The overestimation aggravates when risk is estimated for larger areas. This study demonstrates the importance of representing the spatial dependence of flood peaks and damage for risk assessments. Y1 - 2020 U6 - https://doi.org/10.5194/nhess-20-967-2020 SN - 1561-8633 SN - 1684-9981 VL - 20 IS - 4 SP - 967 EP - 979 PB - European Geosciences Union (EGU) ; Copernicus CY - Göttingen ER - TY - JOUR A1 - Kreibich, Heidi A1 - Di Baldassarre, Giuliano A1 - Vorogushyn, Sergiy A1 - Aerts, Jeroen C. J. H. A1 - Apel, Heiko A1 - Aronica, Giuseppe T. A1 - Arnbjerg-Nielsen, Karsten A1 - Bouwer, Laurens M. A1 - Bubeck, Philip A1 - Caloiero, Tommaso A1 - Chinh, Do T. A1 - Cortes, Maria A1 - Gain, Animesh K. A1 - Giampa, Vincenzo A1 - Kuhlicke, Christian A1 - Kundzewicz, Zbigniew W. A1 - Llasat, Maria Carmen A1 - Mard, Johanna A1 - Matczak, Piotr A1 - Mazzoleni, Maurizio A1 - Molinari, Daniela A1 - Dung, Nguyen V. A1 - Petrucci, Olga A1 - Schröter, Kai A1 - Slager, Kymo A1 - Thieken, Annegret A1 - Ward, Philip J. A1 - Merz, Bruno T1 - Adaptation to flood risk BT - Results of international paired flood event studies JF - Earth's Future N2 - As flood impacts are increasing in large parts of the world, understanding the primary drivers of changes in risk is essential for effective adaptation. To gain more knowledge on the basis of empirical case studies, we analyze eight paired floods, that is, consecutive flood events that occurred in the same region, with the second flood causing significantly lower damage. These success stories of risk reduction were selected across different socioeconomic and hydro-climatic contexts. The potential of societies to adapt is uncovered by describing triggered societal changes, as well as formal measures and spontaneous processes that reduced flood risk. This novel approach has the potential to build the basis for an international data collection and analysis effort to better understand and attribute changes in risk due to hydrological extremes in the framework of the IAHSs Panta Rhei initiative. Across all case studies, we find that lower damage caused by the second event was mainly due to significant reductions in vulnerability, for example, via raised risk awareness, preparedness, and improvements of organizational emergency management. Thus, vulnerability reduction plays an essential role for successful adaptation. Our work shows that there is a high potential to adapt, but there remains the challenge to stimulate measures that reduce vulnerability and risk in periods in which extreme events do not occur. KW - flooding KW - vulnerability KW - global environmental change KW - adaptation Y1 - 2017 U6 - https://doi.org/10.1002/2017EF000606 SN - 2328-4277 VL - 5 SP - 953 EP - 965 PB - Wiley CY - Hoboken ER - TY - JOUR A1 - Dehnert, Maik T1 - Sustaining the current or pursuing the new BT - incumbent digital transformation strategies in the financial service industry JF - Business research N2 - Digital transformation (DT) is a major challenge for traditional companies. Despite the term, DT is relatively new; its substance is not: a whole stream of research has examined the relationship between DT and firm performance with contradictory findings. Most of these studies have chosen a linear correlational approach, however, did not analyze the holistic interplay of DT dimensions, leading to firm performance. This applies especially to the mature financial services industry and the future perspectives of traditional financial service providers (FSP). Hence, it remains an open question for both research and practice what DT configurations have a positive impact on firm performance. Against this background, the aim of this exploratory study is to examine how DT dimensions are systemically connected to firm performance of incumbent FSP. Drawing on a qualitative-empirical research approach with case data from 83 FSP, we identify digital configurations along different levels of firm performance. Our findings suggest an evolution of digital configurations of FSP, leading to five empirical standard types from which only one managed to establish a profound basis of DT. KW - Digital transformation KW - Banking KW - Insurance KW - Financial services KW - Configurational analysis KW - fsQCA Y1 - 2020 U6 - https://doi.org/10.1007/s40685-020-00136-8 SN - 1866-8658 VL - 13 PB - Springer Nature CY - Berlin ER - TY - JOUR A1 - Sanchez Sanz, Arturo A1 - Laudenbach, Benoît A1 - Weiß, Adrian A1 - Werner, Eva A1 - Stachon, Markus A1 - Anders, Friedrich A1 - Barthel, Christian A1 - Berrens, Dominik A1 - Avalli, Andrea A1 - Vandewalle, Alexander A1 - Ferrara, Pasquale A1 - Pohl, Patrik ED - Ambühl, Annemarie ED - Carlà-Uhink, Filippo ED - Rollinger, Christian ED - Walde, Christine T1 - Spring Issue T2 - thersites Y1 - 2023 U6 - https://doi.org/10.34679/thersites.vol16 SN - 2364-7612 VL - 2023 IS - 16 ER - TY - JOUR A1 - Inceoglu, Fadil A1 - Shprits, Yuri A1 - Heinemann, Stephan G. A1 - Bianco, Stefano T1 - Identification of coronal holes on AIA/SDO images using unsupervised machine learning JF - The astrophysical journal : an international review of spectroscopy and astronomical physics N2 - Through its magnetic activity, the Sun governs the conditions in Earth's vicinity, creating space weather events, which have drastic effects on our space- and ground-based technology. One of the most important solar magnetic features creating the space weather is the solar wind that originates from the coronal holes (CHs). The identification of the CHs on the Sun as one of the source regions of the solar wind is therefore crucial to achieve predictive capabilities. In this study, we used an unsupervised machine-learning method, k-means, to pixel-wise cluster the passband images of the Sun taken by the Atmospheric Imaging Assembly on the Solar Dynamics Observatory in 171, 193, and 211 angstrom in different combinations. Our results show that the pixel-wise k-means clustering together with systematic pre- and postprocessing steps provides compatible results with those from complex methods, such as convolutional neural networks. More importantly, our study shows that there is a need for a CH database where a consensus about the CH boundaries is reached by observers independently. This database then can be used as the "ground truth," when using a supervised method or just to evaluate the goodness of the models. Y1 - 2022 U6 - https://doi.org/10.3847/1538-4357/ac5f43 SN - 1538-4357 VL - 930 IS - 2 PB - IOP Publ. Ltd. CY - Bristol ER - TY - JOUR A1 - Smirnov, Artem G. A1 - Kronberg, Elena A. A1 - Daly, Patrick W. A1 - Aseev, Nikita A1 - Shprits, Yuri A1 - Kellerman, Adam C. T1 - Adiabatic Invariants Calculations for Cluster Mission: A Long-Term Product for Radiation Belts Studies JF - Journal of Geophysical Research: Space Physics N2 - The Cluster mission has produced a large data set of electron flux measurements in the Earth's magnetosphere since its launch in late 2000. Electron fluxes are measured using Research with Adaptive Particle Imaging Detector (RAPID)/Imaging Electron Spectrometer (IES) detector as a function of energy, pitch angle, spacecraft position, and time. However, no adiabatic invariants have been calculated for Cluster so far. In this paper we present a step-by-step guide to calculations of adiabatic invariants and conversion of the electron flux to phase space density (PSD) in these coordinates. The electron flux is measured in two RAPID/IES energy channels providing pitch angle distribution at energies 39.2-50.5 and 68.1-94.5 keV in nominal mode since 2004. A fitting method allows to expand the conversion of the differential fluxes to the range from 40 to 150 keV. Best data coverage for phase space density in adiabatic invariant coordinates can be obtained for values of second adiabatic invariant, K, similar to 10(2), and values of the first adiabatic invariant mu in the range approximate to 5-20 MeV/G. Furthermore, we describe the production of a new data product "LSTAR," equivalent to the third adiabatic invariant, available through the Cluster Science Archive for years 2001-2018 with 1-min resolution. The produced data set adds to the availability of observations in Earth's radiation belts region and can be used for long-term statistical purposes. KW - L-Asterisk KW - magnetosphere KW - electrons KW - model Y1 - 2019 VL - 125 IS - 2 PB - John Wiley & Sons, Inc. CY - New Jersey ER - TY - JOUR A1 - Kuhlman, Sabine T1 - Back to bureaucracy? BT - the advent of the neo-weberian state in Germany JF - Journal of policy studies N2 - In this contribution, the emergence of the neo-Weberian state (NWS) is analyzed with regard to German public administration. Drawing on the concept of a governance space, which consists of a hierarchy, markets, and networks, we distinguish between four empirical manifestations of the NWS, namely, the NWS as (1) come back of the public/ re-municipalization; (2) re-hierarchization; (3) de-agencification; (4) de-escalation in performance management. These movements can, on the one hand, be interpreted as a (partial) reversal of New Public Management (NPM) approaches and a “swinging back of the pendulum” (see Kuhlmann & Wollmann, 2019) toward public and classical Weberian principles (e.g., hierarchy, regulation, institutional re-aggregation). This reversal re-strengthened the hierarchy within the overall governance space to the detriment of, but without completely replacing, market mechanisms and networks. NPM’s failure to deliver what it promised and its inappropriateness as a response to more recent challenges connected to crises and wicked problems have engendered a partial return of the public and a move away from the economization logic of NPM. On the other hand, post-NPM reversals and managerial de-escalation gave rise to hybrid models that merge NPM and classic Weberian administration. While some well-functioning combinations of NPM and Weberianism exist, the hybridization of “old” and “neo” elements has also provoked ambivalent and negative assessments regarding the actual functioning of the NWS in Germany. Our analysis suggests that the NWS is only partially suitable as a model for reform and future administrative modernization, largely depending on the context surrounding reform and implementation practices. KW - weo-weberian State KW - bureaucracy KW - post-new public management KW - hierarchy KW - re-municipalization KW - crisis Y1 - 2024 U6 - https://doi.org/10.52372/jps39202 SN - 2799-9130 SN - 2800-0714 VL - 39 IS - 2 SP - 11 EP - 44 PB - Graduate School of Public Administration CY - Seoul ER - TY - JOUR A1 - Asante, Drusilla Obenewaa A1 - Osei, Francis A1 - Abdul-Samed, Fridaus A1 - Nanevie, Victoria Dzifa T1 - Knowledge and participation in exercise and physical activity among pregnant women in Ho, Ghana JF - Frontiers in Public Health N2 - Background Physical activity (PA) and exercise have been identified to improve the general fitness and health. Although, the Pregnancy Physical Activity Questionnaire (PPAQ) has been validated for use in assessing PA in pregnant women. However, understanding the knowledge and participation levels of PA in pregnant women in the underdeveloped regions of Ghana is of clinical relevance to foster education and promotion of PA. In Ghana, pregnant women believe the "myth" (mostly in rural areas and underdeveloped regions) that exercising in the first trimester might lead to miscarriage. Thus, the main objective of this study was to investigate the extent of knowledge and participation levels in PA among pregnant women in Ho, Ghana using a self-developed questionnaire which consisted of some questions adapted from the PPAQ. MethodsSeventy-seven (n = 77) pregnant women between the ages of 18-50 years were recruited from three hospitals across the Ho municipality of Ghana. A self-developed questionnaire which consisted of some questions taken from the PPAQ was administered to participants under the researchers' supervision. Spearman's correlation analysis was used to find the association between the level of participation in PA, knowledge of PA and gestational age among pregnant women. Results From the total participants (n = 77) recruited, 57 (74%) of the participants scored high in PA knowledge. Most of the participants 48 (62.3%) answered that PA promotes healthy pregnancy. Participants who reported barriers to PA during pregnancy were no exercise habits 51 (66.2%), having no time 17 (22.1%) and fear of miscarriage 9 (11.7%). There was a significant (p < 0.05) association between the level of participation and gestational age. No significant (p > 0.05) association between the level of participation and knowledge of PA was observed. Conclusion There is a high level of knowledge of PA among pregnant women in Ho, Ghana. However, most pregnant women rather engage in PA as their gestational age increases. Thus, to foster sustainable exercise participation during pregnancy, all healthcare providers saddled with the responsibility of providing maternal healthcare must strengthen the education and promotion of exercise and PA among pregnant women in Ho, Ghana. KW - physical activity KW - barriers to physical activity KW - education KW - pregnancy KW - gestational age Y1 - 2022 U6 - https://doi.org/10.3389/fpubh.2022.927191 SN - 2296-2565 VL - 10 PB - Frontiers Media CY - Lausanne ER - TY - JOUR A1 - von Steinkeller, Annika A1 - Grosse, Gerlind T1 - Children are more social when playing analog games together than digital games JF - Computers in Human Behavior Reports N2 - Digital media are being used more and more frequently by children and for a wide variety of functions. However, there are no studies to date that examine the effect of such use on peer interactions and the occurrence of prosocial behavior in peers. For parents, it has been found that when using digital media only few parents respond responsively to their children's attempts at interaction and also very rarely, they communicate with them verbally and nonverbally. In the present study, we investigated how playing a game in a digital versus analog form influences in-teractions (especially prosocial behavior) of peers. We used an experimental situation, where 24 dyads of 4-10-year-old children were examined. Each of the dyads was randomly assigned to a condition where they played either a digital or analog game together. Various interaction parameters and prosocial behavior during and after the game were analyzed. Results show that children in the analog condition communicated verbally with each other more often, responded more often to interaction attempts of their partners and showed less often negative forms of inter-action and more often positive forms of interaction than children in the digital condition. However, the type of medium had no influence on prosocial behavior after the game situation. These results suggest that the format of a game (digital vs. analog) has a decisive influence on peer interactions concerning their communication during but not their prosocial behavior after the game situation. KW - child development KW - peer interactions KW - media KW - prosocial behavior KW - digital KW - games Y1 - 2022 U6 - https://doi.org/10.1016/j.chbr.2022.100195 SN - 2451-9588 VL - 6 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Winkelbeiner, Nicola Lisa A1 - Wandt, Viktoria Klara Veronika A1 - Ebert, Franziska A1 - Lossow, Kristina A1 - Bankoglu, Ezgi E. A1 - Martin, Maximilian A1 - Mangerich, Aswin A1 - Stopper, Helga A1 - Bornhorst, Julia A1 - Kipp, Anna Patricia A1 - Schwerdtle, Tanja T1 - A Multi-Endpoint Approach to Base Excision Repair Incision Activity Augmented by PARylation and DNA Damage Levels in Mice BT - Impact of Sex and Age JF - International Journal of Molecular Sciences N2 - Investigation of processes that contribute to the maintenance of genomic stability is one crucial factor in the attempt to understand mechanisms that facilitate ageing. The DNA damage response (DDR) and DNA repair mechanisms are crucial to safeguard the integrity of DNA and to prevent accumulation of persistent DNA damage. Among them, base excision repair (BER) plays a decisive role. BER is the major repair pathway for small oxidative base modifications and apurinic/apyrimidinic (AP) sites. We established a highly sensitive non-radioactive assay to measure BER incision activity in murine liver samples. Incision activity can be assessed towards the three DNA lesions 8-oxo-2’-deoxyguanosine (8-oxodG), 5-hydroxy-2’-deoxyuracil (5-OHdU), and an AP site analogue. We applied the established assay to murine livers of adult and old mice of both sexes. Furthermore, poly(ADP-ribosyl)ation (PARylation) was assessed, which is an important determinant in DDR and BER. Additionally, DNA damage levels were measured to examine the overall damage levels. No impact of ageing on the investigated endpoints in liver tissue were found. However, animal sex seems to be a significant impact factor, as evident by sex-dependent alterations in all endpoints investigated. Moreover, our results revealed interrelationships between the investigated endpoints indicative for the synergetic mode of action of the cellular DNA integrity maintaining machinery. KW - maintenance of genomic integrity KW - ageing KW - sex KW - DNA damage KW - base excision repair (incision activity) KW - DNA damage response KW - poly(ADP-ribosyl)ation KW - liver Y1 - 2020 U6 - https://doi.org/10.3390/ijms21186600 SN - 1422-0067 VL - 21 IS - 18 PB - Molecular Diversity Preservation International CY - Basel ER - TY - JOUR A1 - Schmidt, Hendrikje A1 - Felisatti, Arianna A1 - Aster, Michael von A1 - Wilbert, Jürgen A1 - Moers, Arpad von A1 - Fischer, Martin H. T1 - Neuromuscular diseases affect number representation and processing BT - An exploratory study JF - Frontiers in psychology / Frontiers Research Foundation N2 - Spinal muscular atrophy (SMA) and Duchenne muscular dystrophy (DMD) both are rare genetic neuromuscular diseases with progressive loss of motor ability. The neuromotor developmental course of those diseases is well documented. In contrast, there is only little evidence about characteristics of general and specific cognitive development. In both conditions the final motor outcome is characterized by an inability to move autonomously: children with SMA never accomplish independent motoric exploration of their environment, while children with DMD do but later lose this ability again. These profound differences in developmental pathways might affect cognitive development of SMA vs. DMD children, as cognition is shaped by individual motor experiences. DMD patients show impaired executive functions, working memory, and verbal IQ, whereas only motor ability seems to be impaired in SMA. Advanced cognitive capacity in SMA may serve as a compensatory mechanism for achieving in education, career progression, and social satisfaction. This study aimed to relate differences in basic numerical concepts and arithmetic achievement in SMA and DMD patients to differences in their motor development and resulting sensorimotor and environmental experiences. Horizontal and vertical spatial-numerical associations were explored in SMA/DMD children ranging between 6 and 12 years through the random number generation task. Furthermore, arithmetic skills as well as general cognitive ability were assessed. Groups differed in spatial number processing as well as in arithmetic and domain-general cognitive functions. Children with SMA showed no horizontal and even reversed vertical spatial-numerical associations. Children with DMD on the other hand revealed patterns in spatial numerical associations comparable to healthy developing children. From the embodied Cognition perspective, early sensorimotor experience does play a role in development of mental number representations. However, it remains open whether and how this becomes relevant for the acquisition of higher order cognitive and arithmetic skills. KW - spatial-numerical associations KW - numerical processing KW - mathematics KW - child development KW - embodied cognition KW - neuromuscular disease KW - spinal muscular atrophy KW - Duchenne muscular dystrophy Y1 - 2021 U6 - https://doi.org/10.3389/fpsyg.2021.697881 SN - 1664-1078 VL - 12 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Richly, Keven A1 - Brauer, Janos A1 - Schlosser, Rainer T1 - Predicting location probabilities of drivers to improved dispatch decisions of transportation network companies based on trajectory data JF - Proceedings of the 9th International Conference on Operations Research and Enterprise Systems - ICORES N2 - The demand for peer-to-peer ridesharing services increased over the last years rapidly. To cost-efficiently dispatch orders and communicate accurate pick-up times is challenging as the current location of each available driver is not exactly known since observed locations can be outdated for several seconds. The developed trajectory visualization tool enables transportation network companies to analyze dispatch processes and determine the causes of unexpected delays. As dispatching algorithms are based on the accuracy of arrival time predictions, we account for factors like noise, sample rate, technical and economic limitations as well as the duration of the entire process as they have an impact on the accuracy of spatio-temporal data. To improve dispatching strategies, we propose a prediction approach that provides a probability distribution for a driver’s future locations based on patterns observed in past trajectories. We demonstrate the capabilities of our prediction results to ( i) avoid critical delays, (ii) to estimate waiting times with higher confidence, and (iii) to enable risk considerations in dispatching strategies. KW - trajectory data KW - location prediction algorithm KW - Peer-to-Peer ridesharing KW - transport network companies KW - risk-aware dispatching Y1 - 2020 PB - Springer CY - Berlin ER - TY - JOUR A1 - Wagner, Birgit A1 - Rosenberg, Nicole A1 - Hofmann, Laura A1 - Maaß, Ulrike T1 - Web-based bereavement care BT - a systematic review and meta-analysis JF - Frontiers in psychiatry N2 - Background: Web-based interventions have been introduced as novel and effective treatments for mental disorders and, in recent years, specifically for the bereaved. However, a systematic summary of the effectiveness of online interventions for people experiencing bereavement is still missing. Objective: A systematic literature search was conducted by four reviewers who reviewed and meta-analytically summarized the evidence for web-based interventions for bereaved people. Methods: Systematic searches (PubMed, Web of Science, PsycInfo, PsycArticles, Medline, and CINAHL) resulted in seven randomized controlled trials (N= 1,257) that addressed adults having experienced bereavement using internet-based interventions. We used random effects models to summarize treatment effects for between-group comparisons (treatmentvs.control at post) and stability over time (postvs.follow-up). Results: All web-based interventions were based on cognitive behavioral therapy (CBT). In comparison with control groups, the interventions showed moderate (g= .54) to large effects (g= .86) for symptoms of grief and posttraumatic stress disorder (PTSD), respectively. The effect for depression was small (g= .44). All effects were stable over time. A higher number of treatment sessions achieved higher effects for grief symptoms and more individual feedback increased effects for depression. Other moderators (i.e.dropout rate, time since loss, exposure) did not significantly reduce moderate degrees of heterogeneity between the studies. Limitations: The number of includable studies was low in this review resulting to lower power for moderator analyses in particular. Conclusions: Overall, the results of web-based bereavement interventions are promising, and its low-threshold approach might reduce barriers to bereavement care. Nonetheless, future research should further examine potential moderators and specific treatment components (e.g.exposure, feedback) and compare interventions with active controls. KW - grief KW - bereavement KW - depression KW - post-traumatic stress disorder KW - internet KW - e-health KW - intervention KW - psychotherapy Y1 - 2020 U6 - https://doi.org/10.3389/fpsyt.2020.00525 SN - 1664-0640 VL - 11 PB - Frontiers Media CY - Lausanne ER - TY - JOUR A1 - Wagner, Birgit A1 - Hofmann, Laura A1 - Maaß, Ulrike T1 - Online-group intervention after suicide bereavement through the use of webinars BT - study protocol for a randomized controlled trial JF - Trials N2 - Introduction: The death of a significant person through suicide is a very difficult experience and can have long-term impact on an individual's psychosocial and physical functioning. However, there are only few studies that have examined the effects of interventions in suicide survivors. In the present study, we examine an online-group intervention for people bereaved by suicide using a group-webinar. Methods: The intervention was developed based on focus groups with the target group. The cognitive-behavioral 12-module webinar-based group intervention focuses on suicide bereavement-related themes such as feelings of guilt, stigmatization, meaning reconstruction and the relationship to the deceased. Further, the webinar includes testimonial videos and psychoeducation. The suicide survivors are randomized to the intervention or the waiting list in a group-cluster randomized controlled trial. Primary outcomes are suicidality (Beck Scale for Suicide Ideation) and depression (Beck Depression Inventory-II) and secondary outcomes are symptoms of prolonged grief disorder (Inventory of Complicated Grief-German Version ), posttraumatic stress disorder ( Revised Impact of Event Scale ), stigmatization (Stigma of Suicide and Suicide Survivor ) and posttraumatic cognitions (Posttraumatic Cognitions Inventory). Discussion: Previous studies of Internet-based interventions for the bereaved were based on writing interventions showing large treatment effects. Little is known about the use of webinars as group interventions. Advantages and challenges of this novel approach of psychological interventions will be discussed. KW - Suicide bereavement KW - grief KW - group intervention KW - webinar KW - suicidality KW - prolonged grief disorder KW - randomized controlled trial Y1 - 2020 U6 - https://doi.org/10.1186/s13063-019-3891-5 SN - 1468-6694 SN - 1745-6215 VL - 21 IS - 1 PB - BioMed Central CY - London ER - TY - JOUR A1 - Maaß, Ulrike A1 - Kühne, Franziska A1 - Heinze, Peter Eric A1 - Ay-Bryson, Destina Sevde A1 - Weck, Florian T1 - The concise measurement of clinical communication skills BT - Validation of a short scale JF - Frontiers in Psychiatry N2 - Objective: There is a lack of brief rating scales for the reliable assessment of psychotherapeutic skills, which do not require intensive rater training and/or a high level of expertise. Thus, the objective is to validate a 14-item version of the Clinical Communication Skills Scale (CCSS-S). Methods: Using a sample of N = 690 video-based ratings of role-plays with simulated patients, we calculated a confirmatory factor analysis and an exploratory structural equation modeling (ESEM), assessed convergent validities, determined inter-rater reliabilities and compared these with those who were either psychology students, advanced psychotherapy trainees, or experts. Results: Correlations with other competence rating scales were high (rs > 0.86–0.89). The intraclass correlations ranged between moderate and good [ICC(2,2) = 0.65–0.80], with student raters yielding the lowest scores. The one-factor model only marginally replicated the data, but the internal consistencies were excellent (α = 0.91–95). The ESEM yielded a two-factor solution (Collaboration and Structuring and Exploration Skills). Conclusion: The CCSS-S is a brief and valid rating scale that reliably assesses basic communication skills, which is particularly useful for psychotherapy training using standardized role-plays. To ensure good inter-rater reliabilities, it is still advisable to employ raters with at least some clinical experience. Future studies should further investigate the one- or two-factor structure of the instrument. KW - standardized patient KW - treatment integrity KW - measurement KW - therapist competence KW - role-play KW - psychotherapy process Y1 - 2022 U6 - https://doi.org/10.3389/fpsyt.2022.977324 SN - 1664-0640 VL - 13 PB - Frontiers CY - Lausanne, Schweiz ER - TY - JOUR A1 - Felisatti, Arianna A1 - Aagten-Murphy, David A1 - Laubrock, Jochen A1 - Shaki, Samuel A1 - Fischer, Martin H. T1 - The brain’s asymmetric frequency tuning BT - asymmetric behavior originates from asymmetric perception JF - Symmetry / Molecular Diversity Preservation International (MDPI) N2 - To construct a coherent multi-modal percept, vertebrate brains extract low-level features (such as spatial and temporal frequencies) from incoming sensory signals. However, because frequency processing is lateralized with the right hemisphere favouring low frequencies while the left favours higher frequencies, this introduces asymmetries between the hemispheres. Here, we describe how this lateralization shapes the development of several cognitive domains, ranging from visuo-spatial and numerical cognition to language, social cognition, and even aesthetic appreciation, and leads to the emergence of asymmetries in behaviour. We discuss the neuropsychological and educational implications of these emergent asymmetries and suggest future research approaches. KW - asymmetry KW - global KW - local KW - spatial frequencies KW - temporal frequencies KW - embodied cognition Y1 - 2020 U6 - https://doi.org/10.3390/sym12122083 SN - 2073-8994 VL - 12 IS - 12 PB - MDPI CY - Basel ER - TY - JOUR A1 - Heistermann, Maik A1 - Francke, Till A1 - Scheiffele, Lena A1 - Petrova, Katya Dimitrova A1 - Budach, Christian A1 - Schrön, Martin A1 - Trost, Benjamin A1 - Rasche, Daniel A1 - Güntner, Andreas A1 - Doepper, Veronika A1 - Förster, Michael A1 - Köhli, Markus A1 - Angermann, Lisa A1 - Antonoglou, Nikolaos A1 - Zude, Manuela A1 - Oswald, Sascha T1 - Three years of soil moisture observations by a dense cosmic-ray neutron sensing cluster at an agricultural research site in north-east Germany JF - Earth system science data : ESSD N2 - Cosmic-ray neutron sensing (CRNS) allows for the estimation of root-zone soil water content (SWC) at the scale of several hectares. In this paper, we present the data recorded by a dense CRNS network operated from 2019 to 2022 at an agricultural research site in Marquardt, Germany - the first multi-year CRNS cluster. Consisting, at its core, of eight permanently installed CRNS sensors, the cluster was supplemented by a wealth of complementary measurements: data from seven additional temporary CRNS sensors, partly co-located with the permanent ones; 27 SWC profiles (mostly permanent); two groundwater observation wells; meteorological records; and Global Navigation Satellite System reflectometry (GNSS-R). Complementary to these continuous measurements, numerous campaign-based activities provided data by mobile CRNS roving, hyperspectral im-agery via UASs, intensive manual sampling of soil properties (SWC, bulk density, organic matter, texture, soil hydraulic properties), and observations of biomass and snow (cover, depth, and density). The unique temporal coverage of 3 years entails a broad spectrum of hydro-meteorological conditions, including exceptional drought periods and extreme rainfall but also episodes of snow coverage, as well as a dedicated irrigation experiment. Apart from serving to advance CRNS-related retrieval methods, this data set is expected to be useful for vari-ous disciplines, for example, soil and groundwater hydrology, agriculture, or remote sensing. Hence, we show exemplary features of the data set in order to highlight the potential for such subsequent studies. The data are available at doi.org/10.23728/b2share.551095325d74431881185fba1eb09c95 (Heistermann et al., 2022b). Y1 - 2023 U6 - https://doi.org/10.5194/essd-15-3243-2023 SN - 1866-3508 SN - 1866-3516 VL - 15 IS - 7 SP - 3243 EP - 3262 PB - Copernics Publications CY - Katlenburg-Lindau ER - TY - JOUR A1 - Smirnov, Artem A1 - Shprits, Yuri A1 - Allison, Hayley A1 - Aseev, Nikita A1 - Drozdov, Alexander A1 - Kollmann, Peter A1 - Wang, Dedong A1 - Saikin, Anthony T1 - Storm-Time evolution of the Equatorial Electron Pitch Angle Distributions in Earth's Outer Radiation Belt JF - Frontiers in astronomy and space sciences N2 - In this study we analyze the storm-time evolution of equatorial electron pitch angle distributions (PADs) in the outer radiation belt region using observations from the Magnetic Electron Ion Spectrometer (MagEIS) instrument aboard the Van Allen Probes in 2012-2019. The PADs are approximated using a sum of the first, third and fifth sine harmonics. Different combinations of the respective coefficients refer to the main PAD shapes within the outer radiation belt, namely the pancake, flat-top, butterfly and cap PADs. We conduct a superposed epoch analysis of 129 geomagnetic storms and analyze the PAD evolution for day and night MLT sectors. PAD shapes exhibit a strong energy-dependent response. At energies of tens of keV, the PADs exhibit little variation throughout geomagnetic storms. Cap PADs are mainly observed at energies < 300 keV, and their extent in L shrinks with increasing energy. The cap distributions transform into the pancake PADs around the main phase of the storm on the nightside, and then come back to their original shapes during the recovery phase. At higher energies on the dayside, the PADs are mainly pancake during pre-storm conditions and become more anisotropic during the main phase. The quiet-time butterfly PADs can be observed on the nightside at L> 5.6. During the main phase, butterfly PADs have stronger 90 degrees-minima and can be observed at lower L-shells (down to L = 5), then transitioning into flat-top PADs at L similar to 4.5 - 5 and pancake PADs at L < 4.5. The resulting PAD coefficients for different energies, locations and storm epochs can be used to test the wave models and physics-based radiation belt codes in terms of pitch angle distributions. KW - pitch angle KW - pitch angle distributions KW - electrons KW - radiation belts KW - magnetosphere KW - van alien probes Y1 - 2022 U6 - https://doi.org/10.3389/fspas.2022.836811 SN - 2296-987X VL - 9 PB - Frontiers Media CY - Lausanne ER - TY - JOUR A1 - Düvel, Pia A1 - Ehmig, Ulrike A1 - McCall, Jeremiah A1 - Unceta Gómez, Luis A1 - Bakogianni, Anastasia A1 - Fischer, Jens A1 - Serrano Lozano, David A1 - Ambühl, Annemarie A1 - Matz, Alicia A1 - Brinker, Wolfram A1 - Mach, Jonas Konstantin A1 - Mancini, Mattia A1 - Werner, Eva ED - Ambühl, Annemarie ED - Carlà-Uhink, Filippo ED - Rollinger, Christian ED - Walde, Christine T1 - Spring Issue T2 - thersites KW - history textbooks KW - textbook research KW - historical consciousness KW - Spartacus KW - slavery KW - history teaching KW - Anfänge der systematischen lateinische Epigraphik KW - Corpus Inscriptionum Latinarum KW - Archiv KW - Reproduktion von Inschriften KW - history KW - video games KW - agents KW - historiography KW - Jonathan Muroya KW - Greek mythology KW - classical reception KW - cartoons Y1 - 2024 U6 - https://doi.org/10.34679/thersites.vol18 SN - 2364-7612 VL - 2024 IS - 18 ER - TY - JOUR A1 - Shprits, Yuri A1 - Menietti, J. D. A1 - Drozdov, Alexander A1 - Horne, Richard B. A1 - Woodfield, Emma E. A1 - Groene, J. B. A1 - de Soria-Santacruz, M. A1 - Averkamp, T. F. A1 - Garrett, H. A1 - Paranicas, C. A1 - Gurnett, Don A. T1 - Strong whistler mode waves observed in the vicinity of Jupiter’s moons JF - Nature Communications N2 - Understanding of wave environments is critical for the understanding of how particles are accelerated and lost in space. This study shows that in the vicinity of Europa and Ganymede, that respectively have induced and internal magnetic fields, chorus wave power is significantly increased. The observed enhancements are persistent and exceed median values of wave activity by up to 6 orders of magnitude for Ganymede. Produced waves may have a pronounced effect on the acceleration and loss of particles in the Jovian magnetosphere and other astrophysical objects. The generated waves are capable of significantly modifying the energetic particle environment, accelerating particles to very high energies, or producing depletions in phase space density. Observations of Jupiter’s magnetosphere provide a unique opportunity to observe how objects with an internal magnetic field can interact with particles trapped in magnetic fields of larger scale objects. Y1 - 2018 U6 - https://doi.org/10.1038/s41467-018-05431-x SN - 2041-1723 VL - 9 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Adolfs, Marjolijn A1 - Hoque, Mohammed Mainul A1 - Shprits, Yuri T1 - Storm-time relative total electron content modelling using machine learning techniques JF - Remote sensing N2 - Accurately predicting total electron content (TEC) during geomagnetic storms is still a challenging task for ionospheric models. In this work, a neural-network (NN)-based model is proposed which predicts relative TEC with respect to the preceding 27-day median TEC, during storm time for the European region (with longitudes 30 degrees W-50 degrees E and latitudes 32.5 degrees N-70 degrees N). The 27-day median TEC (referred to as median TEC), latitude, longitude, universal time, storm time, solar radio flux index F10.7, global storm index SYM-H and geomagnetic activity index Hp30 are used as inputs and the output of the network is the relative TEC. The relative TEC can be converted to the actual TEC knowing the median TEC. The median TEC is calculated at each grid point over the European region considering data from the last 27 days before the storm using global ionosphere maps (GIMs) from international GNSS service (IGS) sources. A storm event is defined when the storm time disturbance index Dst drops below 50 nanotesla. The model was trained with storm-time relative TEC data from the time period of 1998 until 2019 (2015 is excluded) and contains 365 storms. Unseen storm data from 33 storm events during 2015 and 2020 were used to test the model. The UQRG GIMs were used because of their high temporal resolution (15 min) compared to other products from different analysis centers. The NN-based model predictions show the seasonal behavior of the storms including positive and negative storm phases during winter and summer, respectively, and show a mixture of both phases during equinoxes. The model's performance was also compared with the Neustrelitz TEC model (NTCM) and the NN-based quiet-time TEC model, both developed at the German Aerospace Agency (DLR). The storm model has a root mean squared error (RMSE) of 3.38 TEC units (TECU), which is an improvement by 1.87 TECU compared to the NTCM, where an RMSE of 5.25 TECU was found. This improvement corresponds to a performance increase by 35.6%. The storm-time model outperforms the quiet-time model by 1.34 TECU, which corresponds to a performance increase by 28.4% from 4.72 to 3.38 TECU. The quiet-time model was trained with Carrington averaged TEC and, therefore, is ideal to be used as an input instead of the GIM derived 27-day median. We found an improvement by 0.8 TECU which corresponds to a performance increase by 17% from 4.72 to 3.92 TECU for the storm-time model using the quiet-time-model predicted TEC as an input compared to solely using the quiet-time model. KW - ionosphere KW - relative total electron content KW - geomagnetic storms KW - neural KW - networks KW - NTCM KW - European storm-time model Y1 - 2022 U6 - https://doi.org/10.3390/rs14236155 SN - 2072-4292 VL - 14 IS - 23 PB - MDPI CY - Basel ER - TY - JOUR A1 - Zwickel, Theresa A1 - Kahl, Sandra A1 - Rychlik, Michael A1 - Müller, Marina E. H. T1 - Chemotaxonomy of Mycotoxigenic Small-Spored Alternaria Fungi BT - Do Multitoxin Mixtures Act as an Indicator for Species Differentiation? JF - Frontiers in microbiology N2 - Necrotrophic as well as saprophytic small-spored Altemaria (A.) species are annually responsible for major losses of agricultural products, such as cereal crops, associated with the contamination of food and feedstuff with potential health-endangering Altemaria toxins. Knowledge of the metabolic capabilities of different species-groups to form mycotoxins is of importance for a reliable risk assessment. 93 Altemaria strains belonging to the four species groups Alternaria tenuissima, A. arborescens, A. altemata, and A. infectoria were isolated from winter wheat kernels harvested from fields in Germany and Russia and incubated under equal conditions. Chemical analysis by means of an HPLC-MS/MS multi-Alternaria-toxin-method showed that 95% of all strains were able to form at least one of the targeted 17 non-host specific Altemaria toxins. Simultaneous production of up to 15 (modified) Altemaria toxins by members of the A. tenuissima, A. arborescens, A. altemata species-groups and up to seven toxins by A. infectoria strains was demonstrated. Overall tenuazonic acid was the most extensively formed mycotoxin followed by alternariol and alternariol mono methylether, whereas altertoxin I was the most frequently detected toxin. Sulfoconjugated modifications of alternariol, alternariol mono methylether, altenuisol and altenuene were frequently determined. Unknown perylene quinone derivatives were additionally detected. Strains of the species-group A. infectoria could be segregated from strains of the other three species-groups due to significantly lower toxin levels and the specific production of infectopyrone. Apart from infectopyrone, alterperylenol was also frequently produced by 95% of the A. infectoria strains. Neither by the concentration nor by the composition of the targeted Altemaria toxins a differentiation between the species-groups A. altemata, A. tenuissima and A. arborescens was possible. KW - small-spored Alternaria fungi KW - Alternaria species-groups KW - Alternaria mycotoxins KW - chemotaxonomy KW - secondary metabolite profiling KW - LC-MS/MS KW - wheat KW - perylene quinone derivatives Y1 - 2018 U6 - https://doi.org/10.3389/fmicb.2018.01368 SN - 1664-302X VL - 9 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Landis, Daji August A1 - Saikin, Anthony A1 - Zhelavskaya, Irina A1 - Drozdov, Alexander A1 - Aseev, Nikita A1 - Shprits, Yuri A1 - Pfitzer, Maximilian F. A1 - Smirnov, Artem G. T1 - NARX Neural Network Derivations of the Outer Boundary Radiation Belt Electron Flux JF - Space Weather: the international journal of research and applications N2 - We present two new empirical models of radiation belt electron flux at geostationary orbit. GOES-15 measurements of 0.8 MeV electrons were used to train a Nonlinear Autoregressive with Exogenous input (NARX) neural network for both modeling GOES-15 flux values and an upper boundary condition scaling factor (BF). The GOES-15 flux model utilizes an input and feedback delay of 2 and 2 time steps (i.e., 5 min time steps) with the most efficient number of hidden layers set to 10. Magnetic local time, Dst, Kp, solar wind dynamic pressure, AE, and solar wind velocity were found to perform as predicative indicators of GOES-15 flux and therefore were used as the exogenous inputs. The NARX-derived upper boundary condition scaling factor was used in conjunction with the Versatile Electron Radiation Belt (VERB) code to produce reconstructions of the radiation belts during the period of July-November 1990, independent of in-situ observations. Here, Kp was chosen as the sole exogenous input to be more compatible with the VERB code. This Combined Release and Radiation Effects Satellite-era reconstruction showcases the potential to use these neural network-derived boundary conditions as a method of hindcasting the historical radiation belts. This study serves as a companion paper to another recently published study on reconstructing the radiation belts during Solar Cycles 17-24 (Saikin et al., 2021, ), for which the results featured in this paper were used. KW - radiation belts KW - forecasting (1922, 4315, 7924, 7964) KW - machine learning (0555) Y1 - 2022 U6 - https://doi.org/10.1029/2021SW002774 SN - 1542-7390 VL - 20 IS - 5 PB - American Geophysical Union CY - Washington ER - TY - JOUR A1 - Prol, Fabricio S. A1 - Smirnov, Artem G. A1 - Hoque, M. Mainul A1 - Shprits, Yuri T1 - Combined model of topside ionosphere and plasmasphere derived from radio-occultation and Van Allen Probes data JF - Scientific reports N2 - In the last years, electron density profile functions characterized by a linear dependence on the scale height showed good results when approximating the topside ionosphere. The performance above 800 km, however, is not yet well investigated. This study investigates the capability of the semi-Epstein functions to represent electron density profiles from the peak height up to 20,000 km. Electron density observations recorded by the Van Allen Probes were used to resolve the scale height dependence in the plasmasphere. It was found that the linear dependence of the scale height in the topside ionosphere cannot be directly used to extrapolate profiles above 800 km. We find that the dependence of scale heights on altitude is quadratic in the plasmasphere. A statistical model of the scale heights is therefore proposed. After combining the topside ionosphere and plasmasphere by a unified model, we have obtained good estimations not only in the profile shapes, but also in the Total Electron Content magnitude and distributions when compared to actual measurements from 2013, 2014, 2016 and 2017. Our investigation shows that Van Allen Probes can be merged to radio-occultation data to properly represent the upper ionosphere and plasmasphere by means of a semi-Epstein function. Y1 - 2022 U6 - https://doi.org/10.1038/s41598-022-13302-1 SN - 2045-2322 VL - 12 IS - 1 PB - Macmillan Publishers Limited, part of Springer Nature CY - London ER - TY - JOUR A1 - Haas, Bernhard A1 - Shprits, Yuri A1 - Allison, Hayley A1 - Wutzig, Michael A1 - Wang, Dedong T1 - Which parameter controls ring current electron dynamics JF - Frontiers in astronomy and space sciences N2 - Predicting the electron population of Earth's ring current during geomagnetic storms still remains a challenging task. In this work, we investigate the sensitivity of 10 keV ring current electrons to different driving processes, parameterised by the Kp index, during several moderate and intense storms. Results are validated against measurements from the Van Allen Probes satellites. Perturbing the Kp index allows us to identify the most dominant processes for moderate and intense storms respectively. We find that during moderate storms (Kp < 6) the drift velocities mostly control the behaviour of low energy electrons, while loss from wave-particle interactions is the most critical parameter for quantifying the evolution of intense storms (Kp > 6). Perturbations of the Kp index used to drive the boundary conditions at GEO and set the plasmapause location only show a minimal effect on simulation results over a limited L range. It is further shown that the flux at L & SIM; 3 is more sensitive to changes in the Kp index compared to higher L shells, making it a good proxy for validating the source-loss balance of a ring current model. KW - ring current KW - magnetosphere KW - electron lifetimes KW - electrons KW - van allen probes (RBSP) KW - ring current model KW - verb Y1 - 2022 U6 - https://doi.org/10.3389/fspas.2022.911002 SN - 2296-987X VL - 9 PB - Frontiers Media CY - Lausanne ER - TY - JOUR A1 - Kühne, Franziska A1 - Paunov, Tatjana A1 - Weck, Florian T1 - Recognizing obsessive-compulsive disorder BT - How suitable is the German Zohar-Fineberg obsessive-compulsive screen? JF - BMC psychiatry N2 - Background Despite the prevalence of obsessive-compulsive disorder (OCD), its precise identification remains challenging. With the Zohar-Fineberg Obsessive-Compulsive Screen (ZF-OCS; 5 or 6 items), a brief instrument is widely available mainly in English. As there is a lack of empirical studies on the ZF-OCS, the aim of the present study was to translate the items into German and investigate the instrument in a nonclinical sample. Methods In two consecutive online surveys, n = 304 and n = 51 students participated. Besides the ZF-OCS, they answered established measures on OCD, depression, health anxiety, general anxiety and health-related well-being. Results Whereas internal consistency was low (α = .53–.72; ω = .55–.69), retest reliability (rt1,t2 = .89) at two weeks was high. As expected, we found high correlations with other OCD instruments (r > .61; convergent validity), and significantly weaker correlations with measures of depression (r = .39), health anxiety (r = .29), and health-related well-being (r = −.28, divergent validity). Nonetheless, the correlations with general anxiety were somewhere in between (r = .52). Conclusions Due to heterogeneous OCD subtypes, the ZF-OCS asks diverse questions which probably resulted in the present internal consistency. Nevertheless, the results on retest reliability and validity were promising. As for other OCD instruments, divergent validity regarding general anxiety seems problematic to establish. Even so, the ZF-OCS seems valuable for screening purposes, as it is short and easy to administer, and may facilitate initiating subsequent clinical assessment. Further studies should determine the instrument’s diagnostic accuracy. KW - Obsessive-compulsive disorder KW - Psychodiagnostics KW - Psychometric properties KW - Screening Y1 - 2021 U6 - https://doi.org/10.1186/s12888-021-03458-x SN - 1471-244X VL - 21 PB - Springer Nature CY - London ER - TY - JOUR A1 - Bornhorst, Dorothee A1 - Seyfried, Salim T1 - Strong as a hippo’s heart BT - Biomechanical hippo signaling during zebrafish cardiac development JF - Frontiers in cell and developmental biology N2 - The heart is comprised of multiple tissues that contribute to its physiological functions. During development, the growth of myocardium and endocardium is coupled and morphogenetic processes within these separate tissue layers are integrated. Here, we discuss the roles of mechanosensitive Hippo signaling in growth and morphogenesis of the zebrafish heart. Hippo signaling is involved in defining numbers of cardiac progenitor cells derived from the secondary heart field, in restricting the growth of the epicardium, and in guiding trabeculation and outflow tract formation. Recent work also shows that myocardial chamber dimensions serve as a blueprint for Hippo signaling-dependent growth of the endocardium. Evidently, Hippo pathway components act at the crossroads of various signaling pathways involved in embryonic zebrafish heart development. Elucidating how biomechanical Hippo signaling guides heart morphogenesis has direct implications for our understanding of cardiac physiology and pathophysiology. KW - Hippo signaling KW - Yap1/Wwtr1 (Taz) KW - cardiac development KW - mechanobiology KW - endocardium KW - myocardium KW - zebrafish KW - intra-organ-communication Y1 - 2021 U6 - https://doi.org/10.3389/fcell.2021.731101 SN - 2296-634X VL - 9 SP - 1 EP - 10 PB - Frontiers Media CY - Lausanne, Schweiz ER - TY - JOUR A1 - Szangolies, Leonna A1 - Rohwäder, Marie-Sophie A1 - Jeltsch, Florian T1 - Single large AND several small habitat patches BT - a community perspective on their importance for biodiversity JF - Basic and applied ecology : Journal of the Gesellschaft für Ökologie N2 - The debate whether single large or several small (SLOSS) patches benefit biodiversity has existed for decades, but recent literature provides increasing evidence for the importance of small habitats. Possible beneficial mechanisms include reduced presence of preda-tors and competitors in small habitat areas or specific functions such as stepping stones for dispersal. Given the increasing amount of studies highlighting individual behavioral differences that may influence these functions, we hypothesize that the advantage of small versus large habitat patches not only depends on patch functionality but also on the presence of animal personalities (i.e., risk-tolerant vs. risk-averse). Using an individual-based, spatially-explicit community model, we analyzed the diversity of mammal communities in landscapes consisting of a few large habitat islands interspersed with different amounts and sizes of small habitat patches. Within these heterogeneous environments, individuals compete for resources and form home-ranges, with only risk-tolerant individuals using habitat edges. Results show that when risk-tolerant individuals exist, small patches increase species diversity. A strong peak occurs at approximately 20% habitat cover in small patches when those small habitats are only used for foraging but not for breeding and home-range core position. Additional usage as stepping stones for juvenile dispersal further increases species persistence. Over-all, our results reveal that a combination of a few large and several small habitat patches promotes biodiversity by enhancing land-scape heterogeneity. Here, heterogeneity is created by pronounced differences in habitat functionality, increasing edge density, and variability in habitat use by different behavioral types. The finding that a combination of single large AND several small (SLASS) patches is needed for effective biodiversity preservation has implications for advancing landscape conservation. Particularly in struc-turally poor agricultural areas, modern technology enables precise management with the opportunity to create small foraging habitats by excluding less profitable agricultural land from cultivation. KW - SLOSS KW - fragmentation KW - heterogeneity KW - community KW - coexistence KW - coviability KW - competition KW - home-ranges KW - inter-individual difference KW - personality Y1 - 2022 U6 - https://doi.org/10.1016/j.baae.2022.09.004 SN - 1439-1791 SN - 1618-0089 VL - 65 SP - 16 EP - 27 PB - Elsevier CY - München ER - TY - JOUR A1 - Küken, Anika A1 - Treves, Haim A1 - Nikoloski, Zoran T1 - A simulation-free constrained regression approach for flux estimation in isotopically nonstationary metabolic flux analysis with applications in microalgae JF - Frontiers in plant science : FPLS N2 - Introduction Flux phenotypes from different organisms and growth conditions allow better understanding of differential metabolic networks functions. Fluxes of metabolic reactions represent the integrated outcome of transcription, translation, and post-translational modifications, and directly affect growth and fitness. However, fluxes of intracellular metabolic reactions cannot be directly measured, but are estimated via metabolic flux analysis (MFA) that integrates data on isotope labeling patterns of metabolites with metabolic models. While the application of metabolomics technologies in photosynthetic organisms have resulted in unprecedented data from 13CO2-labeling experiments, the bottleneck in flux estimation remains the application of isotopically nonstationary MFA (INST-MFA). INST-MFA entails fitting a (large) system of coupled ordinary differential equations, with metabolite pools and reaction fluxes as parameters. Here, we focus on the Calvin-Benson cycle (CBC) as a key pathway for carbon fixation in photosynthesizing organisms and ask if approaches other than classical INST-MFA can provide reliable estimation of fluxes for reactions comprising this pathway. Methods First, we show that flux estimation with the labeling patterns of all CBC intermediates can be formulated as a single constrained regression problem, avoiding the need for repeated simulation of time-resolved labeling patterns. Results We then compare the flux estimates of the simulation-free constrained regression approach with those obtained from the classical INST-MFA based on labeling patterns of metabolites from the microalgae Chlamydomonas reinhardtii, Chlorella sorokiniana and Chlorella ohadii under different growth conditions. Discussion Our findings indicate that, in data-rich scenarios, simulation-free regression-based approaches provide a suitable alternative for flux estimation from classical INST-MFA since we observe a high qualitative agreement (rs=0.89) to predictions obtained from INCA, a state-of-the-art tool for INST-MFA. KW - metabolic flux analysis KW - INST-MFA KW - regression KW - 13C labeling KW - algae Y1 - 2023 U6 - https://doi.org/10.3389/fpls.2023.1140829 SN - 1664-462X VL - 14 PB - Frontiers Media CY - Lausanne ER - TY - JOUR A1 - Puchkov, Dmytro A1 - Müller, Paul Markus A1 - Lehmann, Martin A1 - Matthäus, Claudia T1 - Analyzing the cellular plasma membrane by fast and efficient correlative STED and platinum replica EM JF - Frontiers in cell and developmental biology N2 - The plasma membrane of mammalian cells links transmembrane receptors, various structural components, and membrane-binding proteins to subcellular processes, allowing inter- and intracellular communication. Therefore, membrane-binding proteins, together with structural components such as actin filaments, modulate the cell membrane in their flexibility, stiffness, and curvature. Investigating membrane components and curvature in cells remains challenging due to the diffraction limit in light microscopy. Preparation of 5–15-nm-thin plasma membrane sheets and subsequent inspection by metal replica transmission electron microscopy (TEM) reveal detailed information about the cellular membrane topology, including the structure and curvature. However, electron microscopy cannot identify proteins associated with specific plasma membrane domains. Here, we describe a novel adaptation of correlative super-resolution light microscopy and platinum replica TEM (CLEM-PREM), allowing the analysis of plasma membrane sheets with respect to their structural details, curvature, and associated protein composition. We suggest a number of shortcuts and troubleshooting solutions to contemporary PREM protocols. Thus, implementation of super-resolution stimulated emission depletion (STED) microscopy offers significant reduction in sample preparation time and reduced technical challenges for imaging and analysis. Additionally, highly technical challenges associated with replica preparation and transfer on a TEM grid can be overcome by scanning electron microscopy (SEM) imaging. The combination of STED microscopy and platinum replica SEM or TEM provides the highest spatial resolution of plasma membrane proteins and their underlying membrane and is, therefore, a suitable method to study cellular events like endocytosis, membrane trafficking, or membrane tension adaptations. KW - plasma membrane KW - endocytosis KW - CLEM KW - STED KW - TEM KW - SEM KW - electron microscopy Y1 - 2023 U6 - https://doi.org/10.3389/fcell.2023.1305680 SN - 2296-634X VL - 11 PB - Frontiers Media CY - Lausanne ER - TY - JOUR A1 - Wojcik, Laurie Anne Myriam A1 - Ceulemans, Ruben A1 - Gaedke, Ursula T1 - Functional diversity buffers the effects of a pulse perturbation on the dynamics of tritrophic food webs JF - Ecology and Evolution N2 - Biodiversity decline causes a loss of functional diversity, which threatens ecosystems through a dangerous feedback loop: This loss may hamper ecosystems’ ability to buffer environmental changes, leading to further biodiversity losses. In this context, the increasing frequency of human-induced excessive loading of nutrients causes major problems in aquatic systems. Previous studies investigating how functional diversity influences the response of food webs to disturbances have mainly considered systems with at most two functionally diverse trophic levels. We investigated the effects of functional diversity on the robustness, that is, resistance, resilience, and elasticity, using a tritrophic—and thus more realistic—plankton food web model. We compared a non-adaptive food chain with no diversity within the individual trophic levels to a more diverse food web with three adaptive trophic levels. The species fitness differences were balanced through trade-offs between defense/growth rate for prey and selectivity/half-saturation constant for predators. We showed that the resistance, resilience, and elasticity of tritrophic food webs decreased with larger perturbation sizes and depended on the state of the system when the perturbation occurred. Importantly, we found that a more diverse food web was generally more resistant and resilient but its elasticity was context-dependent. Particularly, functional diversity reduced the probability of a regime shift toward a non-desirable alternative state. The basal-intermediate interaction consistently determined the robustness against a nutrient pulse despite the complex influence of the shape and type of the dynamical attractors. This relationship was strongly influenced by the diversity present and the third trophic level. Overall, using a food web model of realistic complexity, this study confirms the destructive potential of the positive feedback loop between biodiversity loss and robustness, by uncovering mechanisms leading to a decrease in resistance, resilience, and potentially elasticity as functional diversity declines. KW - functional diversity KW - nutrient spike KW - pulse perturbation KW - regime shift KW - robustness KW - tritrophic food web Y1 - 2021 U6 - https://doi.org/10.1002/ece3.8214 SN - 2045-7758 N1 - Wojcik and Ceulemans shared first authorship. VL - 11 IS - 22 SP - 15639 EP - 15663 PB - John Wiley & Sons, Inc. CY - Hoboken (New Jersey) ER - TY - GEN A1 - Krause, Werner T1 - Die Macht der Sonntagsfrage T2 - Verfassungsblog : on matters constitutional N2 - Für das Jahr 2024 sind entscheidende Wahlen geplant – unter ihnen die US-Präsidentschaftswahl und die Wahlen zum Europäischen Parlament. In Deutschland werden in Brandenburg, Sachsen und Thüringen die Landtage gewählt. Wahlumfragen, insbesondere die Sonntagsfrage, sind zu einem integralen Bestandteil von Wahlkämpfen geworden; gleichzeitig steht auch deren Zuverlässigkeit im Zentrum medialer Aufmerksamkeit. Eine Debatte über die Kommunikation und Darstellung von Meinungsumfragen ist in Deutschland dringend notwendig. Eine bindende Selbstverpflichtung der Umfrageinstitute und Medienhäuser wäre eine vielversprechende Lösung. Y1 - 2023 U6 - https://doi.org/10.17176/20231222-111226-0 SN - 2366-7044 PB - Max Steinbeis Verfassungsblog gGmbH CY - Berlin ER - TY - CHAP A1 - Schladebach, Marcus ED - Gräfe, Hans-Christian T1 - Satelliten-Megakonstellationen im Weltraumrecht T2 - Tagungsband zur Sommerkonferenz 2022 : Telemedicus – Recht der Informationsgesellschaft Y1 - 2022 UR - https://rainermuehlhoff.de/media/publications/telemedicus-2022-tagungsband-isbn-978-3-8005-1857-9.pdf SN - 978-3-8005-1857-9 VL - 6 SP - 68 EP - 75 PB - Fachmedien Recht und Wirtschaft, dfv Mediengruppe CY - Frankfurt am Main ER - TY - GEN A1 - El Mahmoud, Khaled T1 - ‘Steadfast and unreserved’ BT - is Germany in breach of its obligation to ensure respect for international humanitarian law? T2 - Verfassungsblog : on matters constitutional Y1 - 2023 U6 - https://doi.org/10.59704/b01ead5567535025 SN - 2366-7044 PB - Max Steinbeis Verfassungsblog gGmbH CY - Berlin ER - TY - JOUR A1 - Aktas, Berfin A1 - Stede, Manfred T1 - Anaphoric distance in oral and written language BT - Experimental evidence JF - Discours : revue de linguistique, psycholinguistique et informatique N2 - We investigate the variation in oral and written language in terms of anaphoric distance (i.e., the textual distance between anaphors and their antecedents), expanding corpus-based research with experimental evidence. Contrastive corpus studies demonstrate that oral genres include longer average anaphoric distance than written genres, if the distance is measured in terms of clauses (Fox, 1987; Aktas & Stede, 2020). We designed an experiment in order to examine the contrasts in oral and written mediums, using the same genre. We aim to gain more insight about the impact of the medium, in a situation where both mediums convey a similar level of spontaneity, informality and interactivity. We designed a story continuation study, where the participants are recruited via crowdsourcing. To our knowledge, this is the first study of its kind, where anaphoric distance is manipulated systematically in a language production experiment in order to examine medium distinctions. We observed that participants use more pronouns in oral medium than in written medium if the anaphoric distance is long. This result is in line with the implications of the earlier corpus-based research. In addition, our results indicate that anaphoric distance has a larger effect in referential choice for the written medium. KW - anaphora KW - anaphoric distance KW - referential choice KW - production medium KW - oral KW - written KW - story continuation KW - crowdsourcing Y1 - 2022 U6 - https://doi.org/10.4000/discours.12383 SN - 1963-1723 IS - 31 PB - Université de Paris-Sorbonne, Maion Recherche CY - Paris ER - TY - GEN A1 - Koethke, Kira T1 - Forschungsfreiheit im Strafprozess T2 - Verfassungsblog : on matters constitutional KW - Beschlagnahme KW - Deutschland KW - Forschungsfreiheit KW - Strafverfahren KW - Wissenschaftsfreiheit KW - Zeugnisverweigerungsrecht Y1 - 2023 U6 - https://doi.org/10.59704/1e5535e98d06a19b SN - 2366-7044 PB - Max Steinbeis Verfassungsblog gGmbH CY - Berlin ER - TY - JOUR A1 - Romero Mujalli, Daniel A1 - Rochow, Markus A1 - Kahl, Sandra A1 - Paraskevopoulou, Sofia A1 - Folkertsma, Remco A1 - Jeltsch, Florian A1 - Tiedemann, Ralph T1 - Adaptive and nonadaptive plasticity in changing environments BT - Implications for sexual species with different life history strategies JF - Ecology and evolution N2 - Populations adapt to novel environmental conditions by genetic changes or phenotypic plasticity. Plastic responses are generally faster and can buffer fitness losses under variable conditions. Plasticity is typically modeled as random noise and linear reaction norms that assume simple one-to- one genotype–phenotype maps and no limits to the phenotypic response. Most studies on plasticity have focused on its effect on population viability. However, it is not clear, whether the advantage of plasticity depends solely on environmental fluctuations or also on the genetic and demographic properties (life histories) of populations. Here we present an individual-based model and study the relative importance of adaptive and nonadaptive plasticity for populations of sexual species with different life histories experiencing directional stochastic climate change. Environmental fluctuations were simulated using differentially autocorrelated climatic stochasticity or noise color, and scenarios of directiona climate change. Nonadaptive plasticity was simulated as a random environmental effect on trait development, while adaptive plasticity as a linear, saturating, or sinusoidal reaction norm. The last two imposed limits to the plastic response and emphasized flexible interactions of the genotype with the environment. Interestingly, this assumption led to (a) smaller phenotypic than genotypic variance in the population (many-to- one genotype–phenotype map) and the coexistence of polymorphisms, and (b) the maintenance of higher genetic variation—compared to linear reaction norms and genetic determinism—even when the population was exposed to a constant environment for several generations. Limits to plasticity led to genetic accommodation, when costs were negligible, and to the appearance of cryptic variation when limits were exceeded. We found that adaptive plasticity promoted population persistence under red environmental noise and was particularly important for life histories with low fecundity. Populations produing more offspring could cope with environmental fluctuations solely by genetic changes or random plasticity, unless environmental change was too fast. KW - developmental canalization KW - environmental change KW - genetic accommodation KW - Individual-based models KW - limits KW - many-to-one genotype–phenotype map KW - noise color KW - phenotypic plasticity KW - reaction norms KW - stochastic fluctuations Y1 - 2020 U6 - https://doi.org/10.1002/ece3.7485 SN - 2045-7758 VL - 11 IS - 11 SP - 6341 EP - 6357 PB - John Wiley & Sons, Inc. CY - New Jersey ER - TY - CHAP A1 - Wehmeier, Liz Marla ED - Kuhlmann, Sabine ED - Laffin, Martin ED - Wayenberg, Ellen ED - Bergström, Tomas T1 - Intergovernmental relations in digitalization policy BT - German tax administration between centralization and decentralization T2 - New perspectives on intergovernmental relations N2 - Despite the high hopes associated with public sector digitalization, especially in times of crisis, it does not yet hold up to its potential. Both the negotiation and implementation of digitalization policy presents a challenge for all levels of government, requiring extensive coordination efforts. In general, there are conflicting views if more centralized or decentralized policy processes are more effective for coordination—a tension further exacerbated in the context of digitalization policy within multilevel systems, where the imperative of standardization collides with decentralization forces inherent in federalism. Based on the analysis of expert interviews (n = 29), this chapter examines how digitalization policy in the context of the German federal intergovernmental relations context is located and negotiated, and how this relates to local policy implementation. Focusing on the decentralized German tax administration as a case study, the analysis reveals a shift from a conflicted to a multi-layered policy process, underpinned by a mechanism of “concentration without centralization.” Strategic and operational competencies are bundled in an institutionalized and legally regulated network for digitalization to achieve necessary standardization of digital infrastructure. Furthermore, the research emphasizes the influence of intergovernmental relations on local implementation and the associated challenges and opportunities. KW - intergovernmental relations KW - digitalization policy KW - coordination KW - implementation Y1 - 2024 SN - 978-3-031-61789-8 SN - 978-3-031-61790-4 U6 - https://doi.org/10.1007/978-3-031-61790-4_9 SP - 163 EP - 185 PB - Palgrave Macmillan CY - Cham ER - TY - GEN A1 - Ambos, Kai A1 - Bock, Stefanie A1 - Geneuss, Julia A1 - Jeßberger, Florian A1 - Kreß, Claus A1 - Oeter, Stefan A1 - Paulus, Andreas A1 - Talmon, Stefan A1 - Zimmermann, Andreas T1 - Without fear or favour BT - for an effective international criminal court T2 - Verfassungsblog : on matters constitutional Y1 - 2024 U6 - https://doi.org/10.59704/eea458648230c9df SN - 2366-7044 PB - Max Steinbeis Verfassungsblog gGmbH CY - Berlin ER - TY - CHAP A1 - Oehlert, Franziska A1 - Kuhlmann, Sabine ED - Kuhlmann, Sabine ED - Laffin, Martin ED - Wayenberg, Ellen ED - Bergström, Tomas T1 - Inter-administrative relations in migrant integration BT - France, Germany, and Sweden compared T2 - New perspectives on intergovernmental relations N2 - Migrant integration is a prime example of intergovernmental coordination and multilevel governance; first because no level of government can carry out this task alone, and second because its cross-cutting nature often leads to fragmented institutional structures that must be overcome. Within the research strand of intergovernmental relations (IGR), the focus has been on executive actors and governmental decision-makers, resulting in an underexposure of the role of public administration, known as inter-administrative relations (IAR). Against this backdrop, we aim to remedy some of the deficits in IGR research by (1) adopting an explicit IAR perspective which systematically addresses the role of local governments; (2) including a comparative dimension in IAR research that accounts for different administrative ‘starting conditions’ in European countries; and (3) using the policy area of migrant integration as a case in point to empirically investigate developments of institutional convergence and divergence in IAR patterns. It is argued that the coordination of migrant integration in the three countries examined has moved towards more intergovernmental coordination, on the one hand, and that the role of municipalities in this context has been enhanced—varying degrees of (de-)centralization notwithstanding. While certain convergent patterns of inter-governmental coordination have become apparent during the migration crisis, historical path dependencies and administrative cultures still appear to be factors that influence institutional development. KW - inter-administrative relations KW - coordination KW - migrant integration KW - neo-institutionalism Y1 - 2024 SN - 978-3-031-61789-8 SN - 978-3-031-61790-4 U6 - https://doi.org/10.1007/978-3-031-61790-4_5 SP - 77 EP - 101 PB - Palgrave Macmillan CY - Cham ER - TY - CHAP A1 - Vellani, Tomás A1 - Oehlert, Franziska A1 - Walkenhorst, Janina ED - Kuhlmann, Sabine ED - Laffin, Martin ED - Wayenberg, Ellen ED - Bergström, Tomas T1 - Intergovernmental relations in urban climate policy BT - how Berlin and Paris formulate and implement climate strategies T2 - New perspectives on intergovernmental relations N2 - Urban climate strategies have become central tools for steering climate policy in cities. Local policymakers must coordinate a wide range of actors, among them sub-municipal administrative units and neighbouring administrations, in order to ensure legitimate, socially accepted and effective policy. The study examines, from a comparative perspective, how intergovernmental relations (IGR) play out in the formulation and implementation of climate strategies in the metropolitan areas of Berlin and Paris. Embedded in different institutional contexts, both cities followed a trajectory initiated by relatively centralized strategy formulation with an ongoing shift towards more decentralized and coordinated intergovernmental approaches with their respective district administrations. In terms of horizontal IGR, Berlin took a decoupled approach with limited coordination with the state of Brandenburg, whereas Paris was much more closely integrated with its surrounding areas through the inter-municipal metropolis of Greater Paris. Institutional capacity, multilevel coordination and participation demands are identified as three challenges for the existing IGR structures. Addressing these challenges places significant strains on local administrative capacity. The findings highlight the limitations of centralized approaches to IGR at the local level and the importance of aligning the distribution of functional responsibilities with the rights of consultation and participation in climate policy formulation processes. KW - climate policy KW - climate strategies KW - local government KW - intergovernmental relations KW - multilevel coordination Y1 - 2024 SN - 978-3-031-61789-8 SN - 978-3-031-61790-4 U6 - https://doi.org/10.1007/978-3-031-61790-4_8 SP - 143 EP - 162 PB - Palgrave Macmillan CY - Cham ER - TY - BOOK ED - Kuhlmann, Sabine ED - Laffin, Martin ED - Wayenberg, Ellen ED - Bergström, Tomas T1 - New perspectives on intergovernmental relations T3 - Palgrave studies in sub-national governance N2 - This open access book assesses the consequences of contemporary economic and political crises for intergovernmental relations in Europe. Focusing on the crises arising from the Covid-19 pandemic, climate change, surges in migration, and the resurgence of regional nationalist movements, it explores the shifting power balances within intergovernmental relations’ systems. The book takes a comparative analytical perspective on how intergovernmental relations are changing across Europe, and how central governments have responded to coordination challenges as recent crises have disrupted established service delivery chains and their underpinning political and bureaucratic arrangements. It also examines the relationship between recent crises and the sub-national resurgence of territorial politics in many European countries. The book will appeal to those with interests in public administration, sub-national governance and European politics. KW - entre-local relations KW - local self-government KW - sub-national governance KW - refugee crisis KW - pandemic KW - intergovernmental relations KW - coordination KW - Open Access KW - Europe KW - European public administration Y1 - 2024 SN - 978-3-031-61789-8 SN - 978-3-031-61790-4 U6 - https://doi.org/10.1007/978-3-031-61790-4 PB - Palgrave Macmillan CY - Cham ER - TY - JOUR A1 - Gutzeit, Lilly Joan A1 - Tiberius, Victor T1 - Business and management research on the motion picture industry BT - a bibliometric analysis JF - Journalism and media N2 - The motion picture industry is subject to extensive business and management research conducted on a wide range of topics. Due to high research productivity, it is challenging to keep track of the abundance of publications. Against this background, we employ a bibliographic coupling analysis to gain a comprehensive understanding of current research topics. The following themes were defined: Key factors for success, word of mouth and social media, organizational and pedagogical dimensions, advertising—product placement and online marketing, tourism, the influence of data, the influence of culture, revenue maximization and purchase decisions, and the perception and identification of audiences. Based on the cluster analysis, we suggest the following future research opportunities: Exploring technological innovations, especially the influence of social media and streaming platforms in the film industry; the in-depth analysis of the use of artificial intelligence in film production, both in terms of its creative potential and ethical and legal challenges; the exploration of the representation of wokeness and minorities in films and their cultural and economic significance; and, finally, a detailed examination of the long-term effects of the COVID-19 pandemic and other crises on the film industry, especially in terms of changed consumption habits and structural adjustments. KW - bibliometric analysis KW - business researc KW - films KW - movies KW - literature review KW - motion pictures Y1 - 2023 U6 - https://doi.org/10.3390/journalmedia4040076 SN - 2673-5172 VL - 4 IS - 4 SP - 1198 EP - 1210 PB - MDPI CY - Basel ER - TY - JOUR A1 - Zhou, Lin A1 - Fischer, Eric A1 - Brahms, Clemens Markus A1 - Granacher, Urs A1 - Arnrich, Bert T1 - DUO-GAIT BT - a gait dataset for walking under dual-task and fatigue conditions with inertial measurement units JF - Scientific data N2 - In recent years, there has been a growing interest in developing and evaluating gait analysis algorithms based on inertial measurement unit (IMU) data, which has important implications, including sports, assessment of diseases, and rehabilitation. Multi-tasking and physical fatigue are two relevant aspects of daily life gait monitoring, but there is a lack of publicly available datasets to support the development and testing of methods using a mobile IMU setup. We present a dataset consisting of 6-minute walks under single- (only walking) and dual-task (walking while performing a cognitive task) conditions in unfatigued and fatigued states from sixteen healthy adults. Especially, nine IMUs were placed on the head, chest, lower back, wrists, legs, and feet to record under each of the above-mentioned conditions. The dataset also includes a rich set of spatio-temporal gait parameters that capture the aspects of pace, symmetry, and variability, as well as additional study-related information to support further analysis. This dataset can serve as a foundation for future research on gait monitoring in free-living environments. Y1 - 2023 U6 - https://doi.org/10.1038/s41597-023-02391-w SN - 2052-4463 VL - 10 IS - 1 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Ziubanova, Anastasia A. A1 - Laurinavichyute, Anna A1 - Parshina, Olga T1 - Does early exposure to spoken and sign language affect reading fluency in deaf and hard-of-hearing adult signers? JF - Frontiers in psychology N2 - Introduction Early linguistic background, and in particular, access to language, lays the foundation of future reading skills in deaf and hard-of-hearing signers. The current study aims to estimate the impact of two factors – early access to sign and/or spoken language – on reading fluency in deaf and hard-of-hearing adult Russian Sign Language speakers. Methods In the eye-tracking experiment, 26 deaf and 14 hard-of-hearing native Russian Sign Language speakers read 144 sentences from the Russian Sentence Corpus. Analysis of global eye-movement trajectories (scanpaths) was used to identify clusters of typical reading trajectories. The role of early access to sign and spoken language as well as vocabulary size as predictors of the more fluent reading pattern was tested. Results Hard-of-hearing signers with early access to sign language read more fluently than those who were exposed to sign language later in life or deaf signers without access to speech sounds. No association between early access to spoken language and reading fluency was found. Discussion Our results suggest a unique advantage for the hard-of-hearing individuals from having early access to both sign and spoken language and support the existing claims that early exposure to sign language is beneficial not only for deaf but also for hard-of-hearing children. KW - reading fluency KW - deaf KW - hard-of-hearing KW - sign language KW - multimodal bilingualism KW - scanpaths KW - eye movements Y1 - 2023 U6 - https://doi.org/10.3389/fpsyg.2023.1145638 SN - 1664-1078 VL - 14 PB - Frontiers Research Foundation CY - Lausanne ER - TY - JOUR A1 - Basler, Georg A1 - Fernie, Alisdair A1 - Nikoloski, Zoran T1 - Advances in metabolic flux analysis toward genome-scale profiling of higher organisms JF - Bioscience reports : communications and reviews in molecular and cellular biology N2 - Methodological and technological advances have recently paved the way for metabolic flux profiling in higher organisms, like plants. However, in comparison with omics technologies, flux profiling has yet to provide comprehensive differential flux maps at a genome-scale and in different cell types, tissues, and organs. Here we highlight the recent advances in technologies to gather metabolic labeling patterns and flux profiling approaches. We provide an opinion of how recent local flux profiling approaches can be used in conjunction with the constraint-based modeling framework to arrive at genome-scale flux maps. In addition, we point at approaches which use metabolomics data without introduction of label to predict either non-steady state fluxes in a time-series experiment or flux changes in different experimental scenarios. The combination of these developments allows an experimentally feasible approach for flux-based large-scale systems biology studies. Y1 - 2018 U6 - https://doi.org/10.1042/BSR20170224 SN - 0144-8463 SN - 1573-4935 VL - 38 PB - Portland Press (London) CY - London ER - TY - JOUR A1 - Creutzig, Felix A1 - Becker, Sophia A1 - Berrill, Peter A1 - Bongs, Constanze A1 - Bussler, Alexandra A1 - Cave, Ben A1 - Constantino, Sara M. A1 - Grant, Marcus A1 - Heeren, Niko A1 - Heinen, Eva A1 - Hintz, Marie Josefine A1 - Ingen-Housz, Timothee A1 - Johnson, Eric A1 - Kolleck, Nina A1 - Liotta, Charlotte A1 - Lorek, Sylvia A1 - Mattioli, Giulio A1 - Niamir, Leila A1 - McPhearson, Timon A1 - Milojevic-Dupont, Nikola A1 - Nachtigall, Florian A1 - Nagel, Kai A1 - Närger, Henriette A1 - Pathak, Minal A1 - Perrin de Brichambaut, Paola A1 - Reckien, Diana A1 - Reisch, Lucia A. A1 - Revi, Aromar A1 - Schuppert, Fabian A1 - Sudmant, Andrew A1 - Wagner, Felix A1 - Walkenhorst, Janina A1 - Weber, Elke A1 - Wilmes, Michael A1 - Wilson, Charlie A1 - Zekar, Aicha T1 - Towards a public policy of cities and human settlements in the 21st century JF - npj urban sustainability N2 - Cities and other human settlements are major contributors to climate change and are highly vulnerable to its impacts. They are also uniquely positioned to reduce greenhouse gas emissions and lead adaptation efforts. These compound challenges and opportunities require a comprehensive perspective on the public policy of human settlements. Drawing on core literature that has driven debate around cities and climate over recent decades, we put forward a set of boundary objects that can be applied to connect the knowledge of epistemic communities and support an integrated urbanism. We then use these boundary objects to develop the Goals-Intervention-Stakeholder-Enablers (GISE) framework for a public policy of human settlements that is both place-specific and provides insights and tools useful for climate action in cities and other human settlements worldwide. Using examples from Berlin, we apply this framework to show that climate mitigation and adaptation, public health, and well-being goals are closely linked and mutually supportive when a comprehensive approach to urban public policy is applied. Y1 - 2024 U6 - https://doi.org/10.1038/s42949-024-00168-7 SN - 2661-8001 VL - 4 IS - 1 SP - 1 EP - 14 PB - Springer Nature CY - London ER - TY - JOUR A1 - Tabatabaei, Iman A1 - Alseekh, Saleh A1 - Shahid, Mohammad A1 - Leniak, Ewa A1 - Wagner, Mateusz A1 - Mahmoudi, Henda A1 - Thushar, Sumitha A1 - Fernie, Alisdair A1 - Murphy, Kevin M. A1 - Schmöckel, Sandra M. A1 - Tester, Mark A1 - Müller-Röber, Bernd A1 - Skirycz, Aleksandra A1 - Balazadeh, Salma T1 - The diversity of quinoa morphological traits and seed metabolic composition JF - Scientific data N2 - Quinoa (Chenopodium quinoa Willd.) is an herbaceous annual crop of the amaranth family (Amaranthaceae). It is increasingly cultivated for its nutritious grains, which are rich in protein and essential amino acids, lipids, and minerals. Quinoa exhibits a high tolerance towards various abiotic stresses including drought and salinity, which supports its agricultural cultivation under climate change conditions. The use of quinoa grains is compromised by anti-nutritional saponins, a terpenoid class of secondary metabolites deposited in the seed coat; their removal before consumption requires extensive washing, an economically and environmentally unfavorable process; or their accumulation can be reduced through breeding. In this study, we analyzed the seed metabolomes, including amino acids, fatty acids, and saponins, from 471 quinoa cultivars, including two related species, by liquid chromatography - mass spectrometry. Additionally, we determined a large number of agronomic traits including biomass, flowering time, and seed yield. The results revealed considerable diversity between genotypes and provide a knowledge base for future breeding or genome editing of quinoa. Y1 - 2022 U6 - https://doi.org/10.1038/s41597-022-01399-y SN - 2052-4463 VL - 9 IS - 1 PB - Nature Research CY - Berlin ER - TY - JOUR A1 - Mollavali, Mohanna A1 - Börnke, Frederik T1 - Characterization of trehalose-6-phosphate synthase and trehalose-6-phosphate phosphatase genes of tomato (Solanum lycopersicum L.) and analysis of their differential expression in response to temperature JF - International journal of molecular sciences N2 - In plants, the trehalose biosynthetic pathway plays key roles in the regulation of carbon allocation and stress adaptation. Engineering of the pathway holds great promise to increase the stress resilience of crop plants. The synthesis of trehalose proceeds by a two-step pathway in which a trehalose-phosphate synthase (TPS) uses UDP-glucose and glucose-6-phosphate to produce trehalose-6 phosphate (T6P) that is subsequently dephosphorylated by trehalose-6 phosphate phosphatase (TPP). While plants usually do not accumulate high amounts of trehalose, their genome encodes large families of putative trehalose biosynthesis genes, with many members lacking obvious enzymatic activity. Thus, the function of putative trehalose biosynthetic proteins in plants is only vaguely understood. To gain a deeper insight into the role of trehalose biosynthetic proteins in crops, we assessed the enzymatic activity of the TPS/TPP family from tomato (Solanum lycopersicum L.) and investigated their expression pattern in different tissues as well as in response to temperature shifts. From the 10 TPS isoforms tested, only the 2 proteins belonging to class I showed enzymatic activity, while all 5 TPP isoforms investigated were catalytically active. Most of the TPS/TPP family members showed the highest expression in mature leaves, and promoter-reporter gene studies suggest that the two class I TPS genes have largely overlapping expression patterns within the vasculature, with only subtle differences in expression in fruits and flowers. The majority of tomato TPS/TPP genes were induced by heat stress, and individual family members also responded to cold. This suggests that trehalose biosynthetic pathway genes could play an important role during temperature stress adaptation. In summary, our study represents a further step toward the exploitation of the TPS and TPP gene families for the improvement of tomato stress resistance. KW - trehalose metabolism KW - heat stress KW - Solanum lycopersicum KW - yeast complementation Y1 - 2022 U6 - https://doi.org/10.3390/ijms231911436 SN - 1661-6596 SN - 1422-0067 VL - 23 IS - 19 PB - MDPI CY - Basel ER - TY - JOUR A1 - Bastian, Philipp U. A1 - Robel, Nathalie A1 - Schmidt, Peter A1 - Schrumpf, Tim A1 - Günter, Christina A1 - Roddatis, Vladimir A1 - Kumke, Michael Uwe T1 - Resonance energy transfer to track the motion of lanthanide ions BT - what drives the intermixing in core-shell upconverting nanoparticles? JF - Biosensors : open access journal N2 - The imagination of clearly separated core-shell structures is already outdated by the fact, that the nanoparticle core-shell structures remain in terms of efficiency behind their respective bulk material due to intermixing between core and shell dopant ions. In order to optimize the photoluminescence of core-shell UCNP the intermixing should be as small as possible and therefore, key parameters of this process need to be identified. In the present work the Ln(III) ion migration in the host lattices NaYF4 and NaGdF4 was monitored. These investigations have been performed by laser spectroscopy with help of lanthanide resonance energy transfer (LRET) between Eu(III) as donor and Pr(III) or Nd(III) as acceptor. The LRET is evaluated based on the Forster theory. The findings corroborate the literature and point out the migration of ions in the host lattices. Based on the introduced LRET model, the acceptor concentration in the surrounding of one donor depends clearly on the design of the applied core-shell-shell nanoparticles. In general, thinner intermediate insulating shells lead to higher acceptor concentration, stronger quenching of the Eu(III) donor and subsequently stronger sensitization of the Pr(III) or the Nd(III) acceptors. The choice of the host lattice as well as of the synthesis temperature are parameters to be considered for the intermixing process. KW - upconversion nanoparticles KW - lanthanoid migration KW - lanthanides KW - core-shell KW - energy transfer Y1 - 2021 U6 - https://doi.org/10.3390/bios11120515 SN - 2079-6374 VL - 11 IS - 12 PB - MDPI CY - Basel ER - TY - JOUR A1 - Smith, Sarah R. A1 - Dupont, Chris L. A1 - McCarthy, James K. A1 - Broddrick, Jared T. A1 - Obornik, Miroslav A1 - Horak, Ales A1 - Füssy, Zoltán A1 - Cihlar, Jaromir A1 - Kleessen, Sabrina A1 - Zheng, Hong A1 - McCrow, John P. A1 - Hixson, Kim K. A1 - Araujo, Wagner L. A1 - Nunes-Nesi, Adriano A1 - Fernie, Alisdair A1 - Nikoloski, Zoran A1 - Palsson, Bernhard O. A1 - Allen, Andrew E. T1 - Evolution and regulation of nitrogen flux through compartmentalized metabolic networks in a marine diatom JF - Nature Communications N2 - Diatoms outcompete other phytoplankton for nitrate, yet little is known about the mechanisms underpinning this ability. Genomes and genome-enabled studies have shown that diatoms possess unique features of nitrogen metabolism however, the implications for nutrient utilization and growth are poorly understood. Using a combination of transcriptomics, proteomics, metabolomics, fluxomics, and flux balance analysis to examine short-term shifts in nitrogen utilization in the model pennate diatom in Phaeodactylum tricornutum, we obtained a systems-level understanding of assimilation and intracellular distribution of nitrogen. Chloroplasts and mitochondria are energetically integrated at the critical intersection of carbon and nitrogen metabolism in diatoms. Pathways involved in this integration are organelle-localized GS-GOGAT cycles, aspartate and alanine systems for amino moiety exchange, and a split-organelle arginine biosynthesis pathway that clarifies the role of the diatom urea cycle. This unique configuration allows diatoms to efficiently adjust to changing nitrogen status, conferring an ecological advantage over other phytoplankton taxa. KW - Biochemistry KW - Computational biology and bioinformatics KW - Evolution KW - Microbiology KW - Molecular biology Y1 - 2019 U6 - https://doi.org/10.1038/s41467-019-12407-y SN - 2041-1723 VL - 10 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Ferrari, Camilla A1 - Proost, Sebastian A1 - Janowski, Marcin Andrzej A1 - Becker, Jörg A1 - Nikoloski, Zoran A1 - Bhattacharya, Debashish A1 - Price, Dana A1 - Tohge, Takayuki A1 - Bar-Even, Arren A1 - Fernie, Alisdair A1 - Stitt, Mark A1 - Mutwil, Marek T1 - Kingdom-wide comparison reveals the evolution of diurnal gene expression in Archaeplastida JF - Nature Communications N2 - Plants have adapted to the diurnal light-dark cycle by establishing elaborate transcriptional programs that coordinate many metabolic, physiological, and developmental responses to the external environment. These transcriptional programs have been studied in only a few species, and their function and conservation across algae and plants is currently unknown. We performed a comparative transcriptome analysis of the diurnal cycle of nine members of Archaeplastida, and we observed that, despite large phylogenetic distances and dramatic differences in morphology and lifestyle, diurnal transcriptional programs of these organisms are similar. Expression of genes related to cell division and the majority of biological pathways depends on the time of day in unicellular algae but we did not observe such patterns at the tissue level in multicellular land plants. Hence, our study provides evidence for the universality of diurnal gene expression and elucidates its evolutionary history among different photosynthetic eukaryotes. Y1 - 2019 U6 - https://doi.org/10.1038/s41467-019-08703-2 SN - 2041-1723 VL - 10 PB - Nature Publ. Group CY - London ER - TY - JOUR A1 - Zhang, Youjun A1 - Chen, Moxian A1 - Siemiatkowska, Beata A1 - Toleco, Mitchell Rey A1 - Jing, Yue A1 - Strotmann, Vivien A1 - Zhang, Jianghua A1 - Stahl, Yvonne A1 - Fernie, Alisdair T1 - A highly efficient agrobacterium-mediated method for transient gene expression and functional studies in multiple plant species JF - Plant Communications N2 - Although the use of stable transformation technology has led to great insight into gene function, its application in high-throughput studies remains arduous. Agro-infiltration have been widely used in species such as Nicotiana benthamiana for the rapid detection of gene expression and protein interaction analysis, but this technique does not work efficiently in other plant species, including Arabidopsis thaliana. As an efficient high-throughput transient expression system is currently lacking in the model plant species A. thaliana, we developed a method that is characterized by high efficiency, reproducibility, and suitability for transient expression of a variety of functional proteins in A. thaliana and 7 other plant species, including Brassica oleracea, Capsella rubella, Thellungiella salsuginea, Thellungiella halophila, Solanum tuberosum, Capsicum annuum, and N. benthamiana. Efficiency of this method was independently verified in three independent research facilities, pointing to the robustness of this technique. Furthermore, in addition to demonstrating the utility of this technique in a range of species, we also present a case study employing this method to assess protein-protein interactions in the sucrose biosynthesis pathway in Arabidopsis. KW - transient expression KW - agro-infiltration KW - subcellular localization KW - protein-protein interaction Y1 - 2019 SN - 2590-3462 VL - 1 IS - 5 PB - Science Direct CY - New York ER - TY - JOUR A1 - Pandey, Prashant K. A1 - Yu, Jing A1 - Omranian, Nooshin A1 - Alseekh, Saleh A1 - Vaid, Neha A1 - Fernie, Alisdair A1 - Nikoloski, Zoran A1 - Laitinen, Roosa A. E. T1 - Plasticity in metabolism underpins local responses to nitrogen in Arabidopsis thaliana populations JF - Plant Direct N2 - Nitrogen (N) is central for plant growth, and metabolic plasticity can provide a strategy to respond to changing N availability. We showed that two local A. thaliana populations exhibited differential plasticity in the compounds of photorespiratory and starch degradation pathways in response to three N conditions. Association of metabolite levels with growth-related and fitness traits indicated that controlled plasticity in these pathways could contribute to local adaptation and play a role in plant evolution. KW - Arabidopsis thaliana KW - natural variation KW - nitrogen availability KW - photorespiration KW - plasticity Y1 - 2019 U6 - https://doi.org/10.1002/pld3.186 SN - 2475-4455 VL - 3 IS - 11 PB - John Wiley & sonst LTD CY - Chichester ER - TY - JOUR A1 - Córdoba, Sandra Correa A1 - Tong, Hao A1 - Burgos, Asdrubal A1 - Zhu, Feng A1 - Alseekh, Saleh A1 - Fernie, Alisdair A1 - Nikoloski, Zoran T1 - Identification of gene function based on models capturing natural variability of Arabidopsis thaliana lipid metabolism JF - Nature Communications N2 - The use of automated tools to reconstruct lipid metabolic pathways is not warranted in plants. Here, the authors construct Plant Lipid Module for Arabidopsis rosette using constraint-based modeling, demonstrate its integration in other plant metabolic models, and use it to dissect the genetic architecture of lipid metabolism. Lipids play fundamental roles in regulating agronomically important traits. Advances in plant lipid metabolism have until recently largely been based on reductionist approaches, although modulation of its components can have system-wide effects. However, existing models of plant lipid metabolism provide lumped representations, hindering detailed study of component modulation. Here, we present the Plant Lipid Module (PLM) which provides a mechanistic description of lipid metabolism in the Arabidopsis thaliana rosette. We demonstrate that the PLM can be readily integrated in models of A. thaliana Col-0 metabolism, yielding accurate predictions (83%) of single lethal knock-outs and 75% concordance between measured transcript and predicted flux changes under extended darkness. Genome-wide associations with fluxes obtained by integrating the PLM in diel condition- and accession-specific models identify up to 65 candidate genes modulating A. thaliana lipid metabolism. Using mutant lines, we validate up to 40% of the candidates, paving the way for identification of metabolic gene function based on models capturing natural variability in metabolism. KW - Biochemical networks KW - Biochemical reaction networks KW - Genetic models KW - Plant molecular biology Y1 - 2023 U6 - https://doi.org/10.1038/s41467-023-40644-9 SN - 2041-1723 VL - 14 IS - 1 PB - Springer Nature CY - London ER - TY - JOUR A1 - Dettmann, Sophie A1 - Huittinen, Nina Maria A1 - Nicolas, Jahn A1 - Kretzschmar, Jerome A1 - Kumke, Michael Uwe A1 - Kutyma, Tamara A1 - Lohmann, Janik A1 - Reich, Tobias A1 - Schmeide, Katja A1 - Azzam, Salim Shams Aldin A1 - Spittler, Leon A1 - Stietz, Janina T1 - Influence of gluconate on the retention of Eu(III), Am(III), Th(IV), Pu(IV), and U(VI) by C-S-H (C/S = 0.8) JF - Frontiers in Nuclear Engineering N2 - The retention of actinides in different oxidation states (An(X), X = III, IV, VI) by a calcium-silicate-hydrate (C-S-H) phase with a Ca/Si (C/S) ratio of 0.8 was investigated in the presence of gluconate (GLU). The actinides considered were Am(III), Th(IV), Pu(IV), and U(VI). Eu(III) was investigated as chemical analogue for Am(III) and Cm(III). In addition to the ternary systems An(X)/GLU/C-S-H, also binary systems An(X)/C-S-H, GLU/C-S-H, and An(X)/GLU were studied. Complementary analytical techniques were applied to address the different specific aspects of the binary and ternary systems. Time-resolved laser-induced luminescence spectroscopy (TRLFS) was applied in combination with parallel factor analysis (PARAFAC) to identify retained species and to monitor species-selective sorption kinetics. ¹³C and ²⁹Si magic-angle-spinning (MAS) nuclear magnetic resonance (NMR) spectroscopy and X-ray photoelectron spectroscopy (XPS) were applied to determine the bulk structure and the composition of the C-S-H surface, respectively, in the absence and presence of GLU. The interaction of Th(IV) with GLU in different electrolytes was studied by capillary electrophoresis-inductively coupled plasma mass spectrometry (CE-ICP-MS). The influence of GLU on An(X) retention was investigated for a large concentration range up to 10⁻² M. The results showed that GLU had little to no effect on the overall An(X) retention by C-S-H with C/S of 0.8, regardless of the oxidation state of the actinides. For Eu(III), the TRLFS investigations additionally implied the formation of a Eu(III)-bearing precipitate with dissolved constituents of the C-S-H phase, which becomes structurally altered by the presence of GLU. For U(VI) sorption on the C-S-H phase, only a small influence of GLU could be established in the luminescence spectroscopic investigations, and no precipitation of U(VI)-containing secondary phases could be identified. KW - actinide KW - organic ligand KW - sorption KW - cementitious material KW - concrete KW - luminescence Y1 - 2023 U6 - https://doi.org/10.3389/fnuen.2023.1124856 SN - 2813-3412 VL - 2 PB - Frontiers Media CY - Lausanne ER - TY - JOUR A1 - Tönjes, Ralf A1 - Fiore, Carlos E. A1 - Pereira da Silva, Tiago T1 - Coherence resonance in influencer networks JF - Nature Communications N2 - Complex networks are abundant in nature and many share an important structural property: they contain a few nodes that are abnormally highly connected (hubs). Some of these hubs are called influencers because they couple strongly to the network and play fundamental dynamical and structural roles. Strikingly, despite the abundance of networks with influencers, little is known about their response to stochastic forcing. Here, for oscillatory dynamics on influencer networks, we show that subjecting influencers to an optimal intensity of noise can result in enhanced network synchronization. This new network dynamical effect, which we call coherence resonance in influencer networks, emerges from a synergy between network structure and stochasticity and is highly nonlinear, vanishing when the noise is too weak or too strong. Our results reveal that the influencer backbone can sharply increase the dynamical response in complex systems of coupled oscillators. Influencer networks include a small set of highly-connected nodes and can reach synchrony only via strong node interaction. Tonjes et al. show that introducing an optimal amount of noise enhances synchronization of such networks, which may be relevant for neuroscience or opinion dynamics applications. Y1 - 2021 U6 - https://doi.org/10.1038/s41467-020-20441-4 SN - 2041-1723 VL - 12 IS - 1 PB - Nature Publishing Group UK CY - London ER - TY - JOUR A1 - Chemura, Sitshengisiwe A1 - Schrumpf, Tim A1 - Günter, Christina A1 - Kumke, Michael Uwe T1 - Ceria nanomaterials containing ytterbium BT - low and high concentration – luminescence analyzed in the near infrared region JF - RSC Advances : an international journal to further the chemical sciences N2 - Lanthanide based ceria nanomaterials are important practical materials due to the redox properties that are useful in the avenues pertaining to technology and life sciences. Sub 10 nm spherical and highly monodisperse Ce1−xYbxO2−y (0.04 ≤ x ≤ 0.22) nanoparticles were synthesized by thermal decomposition, annealed separately at 773 K and 1273 K for 2 hours and characterized. Elemental mapping for Yb3+ doped ceria nanoparticles shows homogeneous distribution of Yb3+ atoms in the ceria with low Yb3+ content annealed at 773 K and 1273 K for 2 hours. However, clusters are observed for 773 K annealed ceria samples with high concentration of Yb3+. These clusters are not detected in 1273 K annealed nanomaterials. Introducing small amounts of Yb3+ ions into the ceria lattice as spectroscopic probes can provide detailed information about the atomic structure and local environments allowing the monitoring of small structural changes, such as clustering. The emission spectra observed at room temperature and at 4 K have a manifold of bands that corresponds to the 2F5/2 → 2F7/2 transition of Yb3+ ions. Some small shifts are observed in the Stark splitting pattern depending on the sample and the annealing conditions. The deconvolution by PARAFAC analysis yielded luminescence decay kinetics as well as the associated luminescence spectra of three species for each of the low Yb3+ doped ceria samples annealed at 773 K and one species for the 1273 K annealed samples. However, the ceria samples with high concentration of Yb3+ annealed at the two temperatures showed only one species with lower decay times as compared to the low Yb3+ doped ceria samples. Y1 - 2023 U6 - https://doi.org/10.1039/D3RA06868D SN - 2046-2069 VL - 13 IS - 50 SP - 35445 EP - 35456 PB - RSC Publishing CY - London ER - TY - JOUR A1 - Özsoy, Onur A1 - Iefremenko, Kateryna A1 - Schroeder, Christoph T1 - Shifting and expanding clause combining strategies in heritage Turkish varieties JF - Languages N2 - Turkish is a language described as relying predominantly on non-finite subordination in the domain of clause combining. However, there are also strategies of finite subordination, as well as means of syndetic and asyndetic paratactic clause combining, especially in the informal settings. Clause combining is and has been one of the focal points of research on heritage Turkish (h-Turkish). One point is particularly clear: In comparison with the monolingual setting, finite means of clause combining are more frequent in h-Turkish in Germany, the U.S., and the Netherlands, while non-finite means of clause combining are less frequent. Overall, our results confirm the findings of earlier studies: heritage speakers in Germany and the U.S. prefer paratactic means of clause combining using connectors, as opposed to monolingual speakers. Our results also reveal that age (adolescents vs. adults) and register (informal vs. formal) significantly modulate the use of connectors. Moreover, we find that the shift in preferences in means of clause combining triggers an expansion in the system of connectors and leads to the development of new narrative connectors, such as o zaman and derken. The system of syndetic paratactic clause combining is expanding in heritage Turkish. This expansion calls for multifaceted modeling of change in heritage languages, which integrates language-internal factors (register), dynamics of convergence with the contact languages, and extra-linguistic factors (age and language use). KW - bilingualism KW - corpus linguistics KW - heritage languages KW - heritage Turkish KW - clause combining KW - coordination KW - connectors Y1 - 2022 U6 - https://doi.org/10.3390/languages7030242 SN - 2226-471X VL - 7 IS - 3 PB - MDPI CY - Basel ER - TY - JOUR A1 - Wendering, Philipp A1 - Nikoloski, Zoran T1 - Genome-scale modeling specifies the metabolic capabilities of Rhizophagus irregularis JF - mSystems N2 - Rhizophagus irregularis is one of the most extensively studied arbuscular mycorrhizal fungi (AMF) that forms symbioses with and improves the performance of many crops. Lack of transformation protocol for R. irregularis renders it challenging to investigate molecular mechanisms that shape the physiology and interactions of this AMF with plants. Here, we used all published genomics, transcriptomics, and metabolomics resources to gain insights into the metabolic functionalities of R. irregularis by reconstructing its high-quality genome-scale metabolic network that considers enzyme constraints. Extensive validation tests with the enzyme-constrained metabolic model demonstrated that it can be used to (i) accurately predict increased growth of R. irregularis on myristate with minimal medium; (ii) integrate enzyme abundances and carbon source concentrations that yield growth predictions with high and significant Spearman correlation (rS = 0.74) to measured hyphal dry weight; and (iii) simulate growth rate increases with tighter association of this AMF with the host plant across three fungal structures. Based on the validated model and system-level analyses that integrate data from transcriptomics studies, we predicted that differences in flux distributions between intraradical mycelium and arbuscles are linked to changes in amino acid and cofactor biosynthesis. Therefore, our results demonstrated that the enzyme-constrained metabolic model can be employed to pinpoint mechanisms driving developmental and physiological responses of R. irregularis to different environmental cues. In conclusion, this model can serve as a template for other AMF and paves the way to identify metabolic engineering strategies to modulate fungal metabolic traits that directly affect plant performance. IMPORTANCE Mounting evidence points to the benefits of the symbiotic interactions between the arbuscular mycorrhiza fungus Rhizophagus irregularis and crops; however, the molecular mechanisms underlying the physiological responses of this fungus to different host plants and environments remain largely unknown. We present a manually curated, enzyme-constrained, genome-scale metabolic model of R. irregularis that can accurately predict experimentally observed phenotypes. We show that this high-quality model provides an entry point into better understanding the metabolic and physiological responses of this fungus to changing environments due to the availability of different nutrients. The model can be used to design metabolic engineering strategies to tailor R. irregularis metabolism toward improving the performance of host plants. KW - Rhizophagus irregularis KW - metabolic modeling Y1 - 2022 U6 - https://doi.org/10.1128/msystems.01216-21 SN - 2379-5077 VL - 7 IS - 1 PB - American Society for Microbiology CY - Washington, DC ER - TY - JOUR A1 - Woywode, Felix T1 - Jürgen Rathje (Hrsg.) 'Barthold Heinrich Brockes: Irdisches Vergnügen in Gott. Siebenter und Achter Theil.' [Hrsg. und kommentiert v. Jürgen Rathje. Wallstein Verlag, Göttingen 2021, 954 S.] JF - Zeitschrift für Germanistik Y1 - 2022 U6 - https://doi.org/10.3726/92172_418 SN - 0323-7982 SN - 2235-1272 VL - 32 IS - 2 SP - 430 EP - 434 PB - Lang CY - Bern ; Berlin ; Frankfurt, M. ; Wien ER - TY - JOUR A1 - Zurell, Damaris A1 - König, Christian A1 - Malchow, Anne-Kathleen A1 - Kapitza, Simon A1 - Bocedi, Greta A1 - Travis, Justin M. J. A1 - Fandos, Guillermo T1 - Spatially explicit models for decision-making in animal conservation and restoration JF - Ecography : pattern and diversity in ecology / Nordic Ecologic Society Oikos N2 - Models are useful tools for understanding and predicting ecological patterns and processes. Under ongoing climate and biodiversity change, they can greatly facilitate decision-making in conservation and restoration and help designing adequate management strategies for an uncertain future. Here, we review the use of spatially explicit models for decision support and to identify key gaps in current modelling in conservation and restoration. Of 650 reviewed publications, 217 publications had a clear management application and were included in our quantitative analyses. Overall, modelling studies were biased towards static models (79%), towards the species and population level (80%) and towards conservation (rather than restoration) applications (71%). Correlative niche models were the most widely used model type. Dynamic models as well as the gene-to-individual level and the community-to-ecosystem level were underrepresented, and explicit cost optimisation approaches were only used in 10% of the studies. We present a new model typology for selecting models for animal conservation and restoration, characterising model types according to organisational levels, biological processes of interest and desired management applications. This typology will help to more closely link models to management goals. Additionally, future efforts need to overcome important challenges related to data integration, model integration and decision-making. We conclude with five key recommendations, suggesting that wider usage of spatially explicit models for decision support can be achieved by 1) developing a toolbox with multiple, easier-to-use methods, 2) improving calibration and validation of dynamic modelling approaches and 3) developing best-practise guidelines for applying these models. Further, more robust decision-making can be achieved by 4) combining multiple modelling approaches to assess uncertainty, and 5) placing models at the core of adaptive management. These efforts must be accompanied by long-term funding for modelling and monitoring, and improved communication between research and practise to ensure optimal conservation and restoration outcomes. KW - adaptive management KW - biodiversity conservation KW - cost optimisation KW - ecosystem restoration KW - global change KW - predictive models Y1 - 2021 U6 - https://doi.org/10.1111/ecog.05787 SN - 1600-0587 IS - 4 SP - 1 EP - 16 PB - Wiley-Blackwell CY - Oxford ER - TY - JOUR A1 - Ruszkiewicz, Joanna A1 - Papatheodorou, Ylea A1 - Jäck, Nathalie A1 - Melzig, Jasmin A1 - Eble, Franziska A1 - Pirker, Annika A1 - Thomann, Marius A1 - Haberer, Andreas A1 - Rothmiller, Simone A1 - Bürkle, Alexander A1 - Mangerich, Aswin T1 - NAD+ Acts as a protective factor in cellular stress response to DNA alkylating agents JF - Cells : open access journal N2 - Sulfur mustard (SM) and its derivatives are potent genotoxic agents, which have been shown to trigger the activation of poly (ADP-ribose) polymerases (PARPs) and the depletion of their substrate, nicotinamide adenine dinucleotide (NAD+). NAD+ is an essential molecule involved in numerous cellular pathways, including genome integrity and DNA repair, and thus, NAD+ supplementation might be beneficial for mitigating mustard-induced (geno)toxicity. In this study, the role of NAD+ depletion and elevation in the genotoxic stress response to SM derivatives, i.e., the monofunctional agent 2-chloroethyl-ethyl sulfide (CEES) and the crosslinking agent mechlorethamine (HN2), was investigated with the use of NAD+ booster nicotinamide riboside (NR) and NAD+ synthesis inhibitor FK866. The effects were analyzed in immortalized human keratinocytes (HaCaT) or monocyte-like cell line THP-1. In HaCaT cells, NR supplementation, increased NAD+ levels, and elevated PAR response, however, did not affect ATP levels or DNA damage repair, nor did it attenuate long- and short-term cytotoxicities. On the other hand, the depletion of cellular NAD+ via FK866 sensitized HaCaT cells to genotoxic stress, particularly CEES exposure, whereas NR supplementation, by increasing cellular NAD+ levels, rescued the sensitizing FK866 effect. Intriguingly, in THP-1 cells, the NR-induced elevation of cellular NAD+ levels did attenuate toxicity of the mustard compounds, especially upon CEES exposure. Together, our results reveal that NAD+ is an important molecule in the pathomechanism of SM derivatives, exhibiting compound-specificity. Moreover, the cell line-dependent protective effects of NR are indicative of system-specificity of the application of this NAD+ booster. KW - nicotinamide adenine dinucleotide KW - NAD booster; KW - mustard agents KW - nicotinamide riboside KW - DNA damage KW - sulfur mustard KW - poly(ADP-ribosylation) KW - PARP Y1 - 2023 U6 - https://doi.org/10.3390/cells12192396 SN - 2073-4409 VL - 12 IS - 19 PB - MDPI CY - Basel ER - TY - JOUR A1 - Sagu Tchewonpi, Sorel A1 - Rawel, Harshadrai M. A1 - Rohn, Sascha T1 - Targeted bottom-up mass spectrometry approach for the relative quantification of post-translational modification of bovine κ-casein during milk fermentation JF - Molecules N2 - kappa-casein (kappa-CN) is one of the key components in bovine milk, playing a unique role in the structuration of casein micelles. It contains in its chemical structure up to sixteen amino acid residues (mainly serine and threonine) susceptible to modifications, including glycosylation and phosphorylation, which may further be formed during milk processing. In this study, changes in post-translational modification (PTM) of kappa-CN during bovine milk fermentation were investigated. One-to-five-day fermented milk samples were produced. A traditional bottom-up proteomics approach was used to establish a multiple-reaction monitoring (MRM) method for relative quantification of kappa-CN PTM. Endoproteinase Glu-C was found to efficiently digest the kappa-CN molecule. The developed LC-MS method was validated by performing assessments of linearity, precision, repeatability, reproducibility, limit of detection (LOD), and limit of quantification (LOQ). Among the yielded peptides, four of them containing serine and threonine residues were identified and the unmodified as well as the modified variants of each of them were relatively quantified. These peptides were (1) IPTINTIASGEPTSTTE ([140, 158]), (2) STVATLE ([162, 168]), (3) DSPE ([169, 172]), and (4) INTVQVTSTAV ([180, 190]). Distribution analysis between unmodified and modified peptides revealed that over 50% of kappa-CN was found in one of its modified forms in milk. The fermentation process further significantly altered the composition between unmodified/modified kappa-CN, with glycoslaytion being predominant compared to phosphorylation (p < 0.01). Further method development towards alpha and beta-CN fractions and their PTM behavior would be an asset to better understand the changes undergone by milk proteins and the micellar structure during fermentation. KW - bovine milk KW - fermentation KW - kappa-casein KW - post-translational modifications KW - glycosylation KW - phosphorylation KW - mass spectrometry Y1 - 2022 U6 - https://doi.org/10.3390/molecules27185834 SN - 1420-3049 VL - 27 IS - 18 PB - MDPI CY - Basel ER -