TY - JOUR A1 - Prasse, Paul A1 - Knaebel, Rene A1 - Machlica, Lukas A1 - Pevny, Tomas A1 - Scheffer, Tobias T1 - Joint detection of malicious domains and infected clients JF - Machine learning N2 - Detection of malware-infected computers and detection of malicious web domains based on their encrypted HTTPS traffic are challenging problems, because only addresses, timestamps, and data volumes are observable. The detection problems are coupled, because infected clients tend to interact with malicious domains. Traffic data can be collected at a large scale, and antivirus tools can be used to identify infected clients in retrospect. Domains, by contrast, have to be labeled individually after forensic analysis. We explore transfer learning based on sluice networks; this allows the detection models to bootstrap each other. In a large-scale experimental study, we find that the model outperforms known reference models and detects previously unknown malware, previously unknown malware families, and previously unknown malicious domains. KW - Machine learning KW - Neural networks KW - Computer security KW - Traffic data KW - Https traffic Y1 - 2019 U6 - https://doi.org/10.1007/s10994-019-05789-z SN - 0885-6125 SN - 1573-0565 VL - 108 IS - 8-9 SP - 1353 EP - 1368 PB - Springer CY - Dordrecht ER - TY - JOUR A1 - Cabalar, Pedro A1 - Fandinno, Jorge A1 - Schaub, Torsten H. A1 - Schellhorn, Sebastian T1 - Gelfond-Zhang aggregates as propositional formulas JF - Artificial intelligence N2 - Answer Set Programming (ASP) has become a popular and widespread paradigm for practical Knowledge Representation thanks to its expressiveness and the available enhancements of its input language. One of such enhancements is the use of aggregates, for which different semantic proposals have been made. In this paper, we show that any ASP aggregate interpreted under Gelfond and Zhang's (GZ) semantics can be replaced (under strong equivalence) by a propositional formula. Restricted to the original GZ syntax, the resulting formula is reducible to a disjunction of conjunctions of literals but the formulation is still applicable even when the syntax is extended to allow for arbitrary formulas (including nested aggregates) in the condition. Once GZ-aggregates are represented as formulas, we establish a formal comparison (in terms of the logic of Here-and-There) to Ferraris' (F) aggregates, which are defined by a different formula translation involving nested implications. In particular, we prove that if we replace an F-aggregate by a GZ-aggregate in a rule head, we do not lose answer sets (although more can be gained). This extends the previously known result that the opposite happens in rule bodies, i.e., replacing a GZ-aggregate by an F-aggregate in the body may yield more answer sets. Finally, we characterize a class of aggregates for which GZ- and F-semantics coincide. KW - Aggregates KW - Answer Set Programming Y1 - 2019 U6 - https://doi.org/10.1016/j.artint.2018.10.007 SN - 0004-3702 SN - 1872-7921 VL - 274 SP - 26 EP - 43 PB - Elsevier CY - Amsterdam ER - TY - THES A1 - Ashouri, Mohammadreza T1 - TrainTrap BT - a hybrid technique for vulnerability analysis in JAVA Y1 - 2020 ER - TY - JOUR A1 - Aguado, Felicidad A1 - Cabalar, Pedro A1 - Fandiño, Jorge A1 - Pearce, David A1 - Perez, Gilberto A1 - Vidal-Peracho, Concepcion T1 - Revisiting Explicit Negation in Answer Set Programming JF - Theory and practice of logic programming KW - Answer set programming KW - Non-monotonic reasoning KW - Equilibrium logic KW - Explicit negation Y1 - 2019 U6 - https://doi.org/10.1017/S1471068419000267 SN - 1471-0684 SN - 1475-3081 VL - 19 IS - 5-6 SP - 908 EP - 924 PB - Cambridge Univ. Press CY - New York ER - TY - JOUR A1 - Laskov, Pavel A1 - Gehl, Christian A1 - Krüger, Stefan A1 - Müller, Klaus-Robert T1 - Incremental support vector learning: analysis, implementation and applications JF - Journal of machine learning research N2 - Incremental Support Vector Machines (SVM) are instrumental in practical applications of online learning. This work focuses on the design and analysis of efficient incremental SVM learning, with the aim of providing a fast, numerically stable and robust implementation. A detailed analysis of convergence and of algorithmic complexity of incremental SVM learning is carried out. Based on this analysis, a new design of storage and numerical operations is proposed, which speeds up the training of an incremental SVM by a factor of 5 to 20. The performance of the new algorithm is demonstrated in two scenarios: learning with limited resources and active learning. Various applications of the algorithm, such as in drug discovery, online monitoring of industrial devices and and surveillance of network traffic, can be foreseen. KW - incremental SVM KW - online learning KW - drug discovery KW - intrusion detection Y1 - 2006 SN - 1532-4435 VL - 7 SP - 1909 EP - 1936 PB - MIT Press CY - Cambridge, Mass. ER - TY - JOUR A1 - Steuer, Ralf A1 - Humburg, Peter A1 - Selbig, Joachim T1 - Validation and functional annotation of expression-based clusters based on gene ontology JF - BMC bioinformatics N2 - Background: The biological interpretation of large-scale gene expression data is one of the paramount challenges in current bioinformatics. In particular, placing the results in the context of other available functional genomics data, such as existing bio-ontologies, has already provided substantial improvement for detecting and categorizing genes of interest. One common approach is to look for functional annotations that are significantly enriched within a group or cluster of genes, as compared to a reference group. Results: In this work, we suggest the information-theoretic concept of mutual information to investigate the relationship between groups of genes, as given by data-driven clustering, and their respective functional categories. Drawing upon related approaches (Gibbons and Roth, Genome Research 12: 1574-1581, 2002), we seek to quantify to what extent individual attributes are sufficient to characterize a given group or cluster of genes. Conclusion: We show that the mutual information provides a systematic framework to assess the relationship between groups or clusters of genes and their functional annotations in a quantitative way. Within this framework, the mutual information allows us to address and incorporate several important issues, such as the interdependence of functional annotations and combinatorial combinations of attributes. It thus supplements and extends the conventional search for overrepresented attributes within a group or cluster of genes. In particular taking combinations of attributes into account, the mutual information opens the way to uncover specific functional descriptions of a group of genes or clustering result. All datasets and functional annotations used in this study are publicly available. All scripts used in the analysis are provided as additional files. Y1 - 2006 U6 - https://doi.org/10.1186/1471-2105-7-380 SN - 1471-2105 VL - 7 IS - 380 PB - BioMed Central CY - London ER - TY - JOUR A1 - Sarsakov, Vladimir A1 - Schaub, Torsten H. A1 - Tompits, Hans A1 - Woltran, Stefan T1 - A compiler for nested logic programming Y1 - 2004 SN - 3-540- 20721-x ER - TY - JOUR A1 - Linke, Thomas A1 - Tompits, Hans A1 - Woltran, Stefan T1 - On Acyclic and head-cycle free nested logic programs Y1 - 2004 SN - 3-540-22671-01 ER - TY - JOUR A1 - Linke, Thomas A1 - Tompits, Hans A1 - Woltran, Stefan T1 - On acyclic and head-cycle free nested logic programs Y1 - 2004 ER - TY - JOUR A1 - Delgrande, James Patrick A1 - Schaub, Torsten H. A1 - Tompits, Hans A1 - Woltran, Stefan T1 - On Computing belief change operations using quantifield boolean formulas N2 - In this paper, we show how an approach to belief revision and belief contraction can be axiomatized by means of quantified Boolean formulas. Specifically, we consider the approach of belief change scenarios, a general framework that has been introduced for expressing different forms of belief change. The essential idea is that for a belief change scenario (K, R, C), the set of formulas K, representing the knowledge base, is modified so that the sets of formulas R and C are respectively true in, and consistent with the result. By restricting the form of a belief change scenario, one obtains specific belief change operators including belief revision, contraction, update, and merging. For both the general approach and for specific operators, we give a quantified Boolean formula such that satisfying truth assignments to the free variables correspond to belief change extensions in the original approach. Hence, we reduce the problem of determining the results of a belief change operation to that of satisfiability. This approach has several benefits. First, it furnishes an axiomatic specification of belief change with respect to belief change scenarios. This then leads to further insight into the belief change framework. Second, this axiomatization allows us to identify strict complexity bounds for the considered reasoning tasks. Third, we have implemented these different forms of belief change by means of existing solvers for quantified Boolean formulas. As well, it appears that this approach may be straightforwardly applied to other specific approaches to belief change Y1 - 2004 SN - 0955-792X ER - TY - JOUR A1 - Delgrande, James Patrick A1 - Schaub, Torsten H. A1 - Tompits, Hans A1 - Woltran, Stefan T1 - On computing solutions to belief change scenarios Y1 - 2001 SN - 3-540- 42464-4 ER - TY - JOUR A1 - Pearce, David A1 - Sarsakov, Vladimir A1 - Schaub, Torsten H. A1 - Tompits, Hans A1 - Woltran, Stefan T1 - A polynomial translation of logic programs with nested expressions into disjunctive logic programs Y1 - 2002 SN - 3-540-43930-7 ER - TY - JOUR A1 - Besnard, Philippe A1 - Schaub, Torsten H. A1 - Tompits, Hans A1 - Woltran, Stefan T1 - Paraconsistent reasoning via quantified boolean formulas Y1 - 2002 SN - 3-540-44190-5 ER - TY - JOUR A1 - Brain, Martin A1 - Gebser, Martin A1 - Pührer, Jörg A1 - Schaub, Torsten H. A1 - Tompits, Hans A1 - Woltran, Stefan T1 - "That is illogical, Captain!" : the debugging support tool spock for answer-set programs ; system description Y1 - 2007 ER - TY - JOUR A1 - Pearce, David A1 - Sarsakov, Vladimir A1 - Schaub, Torsten H. A1 - Tompits, Hans A1 - Woltran, Stefan T1 - A polynomial translation of logic programs with nested expressions into disjunctive logic programs : preliminary report Y1 - 2002 ER - TY - JOUR A1 - Schaub, Torsten H. A1 - Woltran, Stefan T1 - Answer set programming unleashed! JF - Künstliche Intelligenz N2 - Answer Set Programming faces an increasing popularity for problem solving in various domains. While its modeling language allows us to express many complex problems in an easy way, its solving technology enables their effective resolution. In what follows, we detail some of the key factors of its success. Answer Set Programming [ASP; Brewka et al. Commun ACM 54(12):92–103, (2011)] is seeing a rapid proliferation in academia and industry due to its easy and flexible way to model and solve knowledge-intense combinatorial (optimization) problems. To this end, ASP offers a high-level modeling language paired with high-performance solving technology. As a result, ASP systems provide out-off-the-box, general-purpose search engines that allow for enumerating (optimal) solutions. They are represented as answer sets, each being a set of atoms representing a solution. The declarative approach of ASP allows a user to concentrate on a problem’s specification rather than the computational means to solve it. This makes ASP a prime candidate for rapid prototyping and an attractive tool for teaching key AI techniques since complex problems can be expressed in a succinct and elaboration tolerant way. This is eased by the tuning of ASP’s modeling language to knowledge representation and reasoning (KRR). The resulting impact is nicely reflected by a growing range of successful applications of ASP [Erdem et al. AI Mag 37(3):53–68, 2016; Falkner et al. Industrial applications of answer set programming. K++nstliche Intelligenz (2018)] Y1 - 2018 U6 - https://doi.org/10.1007/s13218-018-0550-z SN - 0933-1875 SN - 1610-1987 VL - 32 IS - 2-3 SP - 105 EP - 108 PB - Springer CY - Heidelberg ER - TY - GEN A1 - Schaub, Torsten H. A1 - Woltran, Stefan T1 - Special issue on answer set programming T2 - Künstliche Intelligenz Y1 - 2018 U6 - https://doi.org/10.1007/s13218-018-0554-8 SN - 0933-1875 SN - 1610-1987 VL - 32 IS - 2-3 SP - 101 EP - 103 PB - Springer CY - Heidelberg ER - TY - JOUR A1 - Besnard, Philippe A1 - Schaub, Torsten H. A1 - Tompits, Hans A1 - Woltran, Stefan T1 - Paraconsistent reasoning via quantified boolean formulas : Part II: Circumscribing inconsistent theories Y1 - 2003 SN - 3-540- 409494-5 ER - TY - JOUR A1 - Delgrande, James A1 - Schaub, Torsten H. A1 - Tompits, Hans A1 - Woltran, Stefan T1 - A model-theoretic approach to belief change in answer set programming JF - ACM transactions on computational logic N2 - We address the problem of belief change in (nonmonotonic) logic programming under answer set semantics. Our formal techniques are analogous to those of distance-based belief revision in propositional logic. In particular, we build upon the model theory of logic programs furnished by SE interpretations, where an SE interpretation is a model of a logic program in the same way that a classical interpretation is a model of a propositional formula. Hence we extend techniques from the area of belief revision based on distance between models to belief change in logic programs. We first consider belief revision: for logic programs P and Q, the goal is to determine a program R that corresponds to the revision of P by Q, denoted P * Q. We investigate several operators, including (logic program) expansion and two revision operators based on the distance between the SE models of logic programs. It proves to be the case that expansion is an interesting operator in its own right, unlike in classical belief revision where it is relatively uninteresting. Expansion and revision are shown to satisfy a suite of interesting properties; in particular, our revision operators satisfy all or nearly all of the AGM postulates for revision. We next consider approaches for merging a set of logic programs, P-1,...,P-n. Again, our formal techniques are based on notions of relative distance between the SE models of the logic programs. Two approaches are examined. The first informally selects for each program P-i those models of P-i that vary the least from models of the other programs. The second approach informally selects those models of a program P-0 that are closest to the models of programs P-1,...,P-n. In this case, P-0 can be thought of as a set of database integrity constraints. We examine these operators with regards to how they satisfy relevant postulate sets. Last, we present encodings for computing the revision as well as the merging of logic programs within the same logic programming framework. This gives rise to a direct implementation of our approach in terms of off-the-shelf answer set solvers. These encodings also reflect the fact that our change operators do not increase the complexity of the base formalism. KW - Theory KW - Answer set programming KW - belief revision KW - belief merging KW - program encodings KW - strong equivalence Y1 - 2013 U6 - https://doi.org/10.1145/2480759.2480766 SN - 1529-3785 VL - 14 IS - 2 PB - Association for Computing Machinery CY - New York ER - TY - JOUR A1 - Brain, Martin A1 - Gebser, Martin A1 - Pührer, Jörg A1 - Schaub, Torsten H. A1 - Tompits, Hans A1 - Woltran, Stefan T1 - Debugging ASP programs by means of ASP Y1 - 2007 SN - 978-3-540- 72199-4 ER - TY - JOUR A1 - Gebser, Martin A1 - Schaub, Torsten H. A1 - Tompits, Hans A1 - Woltran, Stefan T1 - Alternative characterizations for program equivalence under aswer-set semantics : a preliminary report Y1 - 2007 ER - TY - CHAP A1 - Curzon, Paul A1 - Kalas, Ivan A1 - Schubert, Sigrid A1 - Schaper, Niclas A1 - Barnes, Jan A1 - Kennewell, Steve A1 - Bröker, Kathrin A1 - Kastens, Uwe A1 - Magenheim, Johannes A1 - Dagiene, Valentina A1 - Stupuriene, Gabriele A1 - Ellis, Jason Brent A1 - Abreu-Ellis, Carla Reis A1 - Grillenberger, Andreas A1 - Romeike, Ralf A1 - Haugsbakken, Halvdan A1 - Jones, Anthony A1 - Lewin, Cathy A1 - McNicol, Sarah A1 - Nelles, Wolfgang A1 - Neugebauer, Jonas A1 - Ohrndorf, Laura A1 - Schaper, Niclas A1 - Schubert, Sigrid A1 - Opel, Simone A1 - Kramer, Matthias A1 - Trommen, Michael A1 - Pottbäcker, Florian A1 - Ilaghef, Youssef A1 - Passig, David A1 - Tzuriel, David A1 - Kedmi, Ganit Eshel A1 - Saito, Toshinori A1 - Webb, Mary A1 - Weigend, Michael A1 - Bottino, Rosa A1 - Chioccariello, Augusto A1 - Christensen, Rhonda A1 - Knezek, Gerald A1 - Gioko, Anthony Maina A1 - Angondi, Enos Kiforo A1 - Waga, Rosemary A1 - Ohrndorf, Laura A1 - Or-Bach, Rachel A1 - Preston, Christina A1 - Younie, Sarah A1 - Przybylla, Mareen A1 - Romeike, Ralf A1 - Reynolds, Nicholas A1 - Swainston, Andrew A1 - Bendrups, Faye A1 - Sysło, Maciej M. A1 - Kwiatkowska, Anna Beata A1 - Zieris, Holger A1 - Gerstberger, Herbert A1 - Müller, Wolfgang A1 - Büchner, Steffen A1 - Opel, Simone A1 - Schiller, Thomas A1 - Wegner, Christian A1 - Zender, Raphael A1 - Lucke, Ulrike A1 - Diethelm, Ira A1 - Syrbe, Jörn A1 - Lai, Kwok-Wing A1 - Davis, Niki A1 - Eickelmann, Birgit A1 - Erstad, Ola A1 - Fisser, Petra A1 - Gibson, David A1 - Khaddage, Ferial A1 - Knezek, Gerald A1 - Micheuz, Peter A1 - Kloos, Carlos Delgado ED - Brinda, Torsten ED - Reynolds, Nicholas ED - Romeike, Ralf ED - Schwill, Andreas T1 - KEYCIT 2014 BT - key competencies in informatics and ICT N2 - In our rapidly changing world it is increasingly important not only to be an expert in a chosen field of study but also to be able to respond to developments, master new approaches to solving problems, and fulfil changing requirements in the modern world and in the job market. In response to these needs key competencies in understanding, developing and using new digital technologies are being brought into focus in school and university programmes. The IFIP TC3 conference "KEYCIT – Key Competences in Informatics and ICT (KEYCIT 2014)" was held at the University of Potsdam in Germany from July 1st to 4th, 2014 and addressed the combination of key competencies, Informatics and ICT in detail. The conference was organized into strands focusing on secondary education, university education and teacher education (organized by IFIP WGs 3.1 and 3.3) and provided a forum to present and to discuss research, case studies, positions, and national perspectives in this field. T3 - Commentarii informaticae didacticae (CID) - 7 KW - Schlüsselkompetenzen KW - Informatik KW - Bildung KW - ICT KW - Informatikdidaktik KW - Key Competencies KW - Informatics KW - education KW - ICT KW - Computer Science Education Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus4-70325 SN - 978-3-86956-292-6 PB - Universitätsverlag Potsdam CY - Potsdam ER - TY - JOUR A1 - Bordihn, Henning A1 - Fernau, Henning A1 - Holzer, Markus A1 - Manca, Vincenzo A1 - Martin-Vide, Carlos T1 - Iterated sequential transducers as language generating devices JF - Theoretical computer science N2 - Iterated finite state sequential transducers are considered as language generating devices. The hierarchy induced by the size of the state alphabet is proved to collapse to the fourth level. The corresponding language families are related to the families of languages generated by Lindenmayer systems and Chomsky grammars. Finally, some results on deterministic and extended iterated finite state transducers are established. KW - finite state sequential transducers KW - state complexity KW - Lindenmayer systems Y1 - 2006 U6 - https://doi.org/10.1016/j.tcs.2006.07.059 SN - 0304-3975 VL - 369 IS - 1 SP - 67 EP - 81 PB - Elsevier CY - Amsterdam ER - TY - JOUR A1 - Stoffel, Dominik A1 - Kunz, Wolfgang A1 - Gerber, Stefan T1 - And/Or reasoning graphs for determining prime implicants in multi-level combinational networks Y1 - 1997 ER - TY - THES A1 - Gerber, Stefan T1 - Using software for fault detection in arithmetical circuits Y1 - 1995 ER - TY - JOUR A1 - Baier, Thomas A1 - Di Ciccio, Claudio A1 - Mendling, Jan A1 - Weske, Mathias T1 - Matching events and activities by integrating behavioral aspects and label analysis JF - Software and systems modeling N2 - Nowadays, business processes are increasingly supported by IT services that produce massive amounts of event data during the execution of a process. These event data can be used to analyze the process using process mining techniques to discover the real process, measure conformance to a given process model, or to enhance existing models with performance information. Mapping the produced events to activities of a given process model is essential for conformance checking, annotation and understanding of process mining results. In order to accomplish this mapping with low manual effort, we developed a semi-automatic approach that maps events to activities using insights from behavioral analysis and label analysis. The approach extracts Declare constraints from both the log and the model to build matching constraints to efficiently reduce the number of possible mappings. These mappings are further reduced using techniques from natural language processing, which allow for a matching based on labels and external knowledge sources. The evaluation with synthetic and real-life data demonstrates the effectiveness of the approach and its robustness toward non-conforming execution logs. KW - Process mining KW - Event mapping KW - Business process intelligence KW - Constraint satisfaction KW - Declare KW - Natural language processing Y1 - 2018 U6 - https://doi.org/10.1007/s10270-017-0603-z SN - 1619-1366 SN - 1619-1374 VL - 17 IS - 2 SP - 573 EP - 598 PB - Springer CY - Heidelberg ER - TY - JOUR A1 - Przybylla, Mareen A1 - Romeike, Ralf T1 - Empowering learners with tools in CS education BT - physical computing in secondary schools JF - it - Information Technology N2 - In computer science, computer systems are both, objects of investigation and tools that enable creative learning and design. Tools for learning have a long tradition in computer science education. Already in the late 1960s, Papert developed a concept which had an immense impact on the development of informal education in the following years: his theory of constructionism understands learning as a creative process of knowledge construction that is most effective when learners create something purposeful that they can try out, show around, discuss, analyse and receive praise for. By now, there are numerous learning and programming environments that are based on the constructionist ideas. Modern tools offer opportunities for students to learn in motivating ways and gain impressive results in programming games, animations, implementing 3D models or developing interactive objects. This article gives an overview of computer science education research related to tools and media to be used in educational settings. We analyse different types of tools with a special focus on the categorization and development of tools for student adequate physical computing activities in the classroom. Research around the development and evaluation of tools and learning resources in the domain of physical computing is illustrated with the example of "My Interactive Garden", a constructionist learning and programming environment. It is explained how the results from empirical studies are integrated in the continuous development of the learning material. KW - tools KW - media KW - resources KW - computer science education KW - physical computing Y1 - 2018 U6 - https://doi.org/10.1515/itit-2017-0032 SN - 1611-2776 SN - 2196-7032 VL - 60 IS - 2 SP - 91 EP - 101 PB - De Gruyter CY - Berlin ER - TY - GEN A1 - Frank, Mario A1 - Kreitz, Christoph T1 - A theorem prover for scientific and educational purposes T2 - Electronic proceedings in theoretical computer science N2 - We present a prototype of an integrated reasoning environment for educational purposes. The presented tool is a fragment of a proof assistant and automated theorem prover. We describe the existing and planned functionality of the theorem prover and especially the functionality of the educational fragment. This currently supports working with terms of the untyped lambda calculus and addresses both undergraduate students and researchers. We show how the tool can be used to support the students' understanding of functional programming and discuss general problems related to the process of building theorem proving software that aims at supporting both research and education. Y1 - 2018 U6 - https://doi.org/10.4204/EPTCS.267.4 SN - 2075-2180 IS - 267 SP - 59 EP - 69 PB - Open Publishing Association CY - Sydney ER - TY - GEN A1 - Schäpers, Björn A1 - Niemueller, Tim A1 - Lakemeyer, Gerhard A1 - Gebser, Martin A1 - Schaub, Torsten H. T1 - ASP-Based Time-Bounded Planning for Logistics Robots T2 - Twenty-Eighth International Conference on Automated Planning and Scheduling (ICAPS 2018) N2 - Manufacturing industries are undergoing a major paradigm shift towards more autonomy. Automated planning and scheduling then becomes a necessity. The Planning and Execution Competition for Logistics Robots in Simulation held at ICAPS is based on this scenario and provides an interesting testbed. However, the posed problem is challenging as also demonstrated by the somewhat weak results in 2017. The domain requires temporal reasoning and dealing with uncertainty. We propose a novel planning system based on Answer Set Programming and the Clingo solver to tackle these problems and incentivize robot cooperation. Our results show a significant performance improvement, both, in terms of lowering computational requirements and better game metrics. Y1 - 2018 SN - 2334-0835 SN - 2334-0843 SP - 509 EP - 517 PB - ASSOC Association for the Advancement of Artificial Intelligence CY - Palo Alto ER - TY - CHAP A1 - Knoth, Alexander Henning A1 - Kiy, Alexander T1 - (Self-)confident through the introductory study phase with the Reflect App BT - (Self-)confident through the introductory study phase with the Reflect App T2 - CEUR Workshop Proceedings T2 - Selbst-bewusst durch die Studieneingangsphase mit der Reflect-App Y1 - 2014 UR - http://www.scopus.com/inward/record.url?eid=2-s2.0-84921875162&partnerID=MN8TOARS SN - 1613-0073 IS - 1227 SP - 172 EP - 179 PB - CEUR-WS CY - Freiburg ER - TY - JOUR A1 - Ly, Ibrahim A1 - Tarkhanov, Nikolai Nikolaevich T1 - A variational approach to the Cauchy problem for nonlinear elliptic differential equations N2 - We discuss the relaxation of a class of nonlinear elliptic Cauchy problems with data on a piece S of the boundary surface by means of a variational approach known in the optimal control literature as "equation error method". By the Cauchy problem is meant any boundary value problem for an unknown function y in a domain X with the property that the data on S, if combined with the differential equations in X, allow one to determine all derivatives of y on S by means of functional equations. In the case of real analytic data of the Cauchy problem, the existence of a local solution near S is guaranteed by the Cauchy-Kovalevskaya theorem. We also admit overdetermined elliptic systems, in which case the set of those Cauchy data on S for which the Cauchy problem is solvable is very "thin". For this reason we discuss a variational setting of the Cauchy problem which always possesses a generalised solution. Y1 - 2009 UR - http://dx.doi.org/10.1515/jiip U6 - https://doi.org/10.1515/Jiip.2009.037 SN - 0928-0219 ER - TY - JOUR A1 - Prasse, Paul A1 - Iversen, Pascal A1 - Lienhard, Matthias A1 - Thedinga, Kristina A1 - Herwig, Ralf A1 - Scheffer, Tobias T1 - Pre-Training on In Vitro and Fine-Tuning on Patient-Derived Data Improves Deep Neural Networks for Anti-Cancer Drug-Sensitivity Prediction JF - MDPI N2 - Large-scale databases that report the inhibitory capacities of many combinations of candidate drug compounds and cultivated cancer cell lines have driven the development of preclinical drug-sensitivity models based on machine learning. However, cultivated cell lines have devolved from human cancer cells over years or even decades under selective pressure in culture conditions. Moreover, models that have been trained on in vitro data cannot account for interactions with other types of cells. Drug-response data that are based on patient-derived cell cultures, xenografts, and organoids, on the other hand, are not available in the quantities that are needed to train high-capacity machine-learning models. We found that pre-training deep neural network models of drug sensitivity on in vitro drug-sensitivity databases before fine-tuning the model parameters on patient-derived data improves the models’ accuracy and improves the biological plausibility of the features, compared to training only on patient-derived data. From our experiments, we can conclude that pre-trained models outperform models that have been trained on the target domains in the vast majority of cases. KW - deep neural networks KW - drug-sensitivity prediction KW - anti-cancer drugs Y1 - 2022 U6 - https://doi.org/10.3390/cancers14163950 SN - 2072-6694 VL - 14 SP - 1 EP - 14 PB - MDPI CY - Basel, Schweiz ET - 16 ER - TY - JOUR A1 - Everardo Pérez, Flavio Omar A1 - Osorio, Mauricio T1 - Towards an answer set programming methodology for constructing programs following a semi-automatic approach BT - extended and revised version JF - Electronic notes in theoretical computer science N2 - Answer Set Programming (ASP) is a successful rule-based formalism for modeling and solving knowledge-intense combinatorial (optimization) problems. Despite its success in both academic and industry, open challenges like automatic source code optimization, and software engineering remains. This is because a problem encoded into an ASP might not have the desired solving performance compared to an equivalent representation. Motivated by these two challenges, this paper has three main contributions. First, we propose a developing process towards a methodology to implement ASP programs, being faithful to existing methods. Second, we present ASP encodings that serve as the basis from the developing process. Third, we demonstrate the use of ASP to reverse the standard solving process. That is, knowing answer sets in advance, and desired strong equivalent properties, “we” exhaustively reconstruct ASP programs if they exist. This paper was originally motivated by the search of propositional formulas (if they exist) that represent the semantics of a new aggregate operator. Particularly, a parity aggregate. This aggregate comes as an improvement from the already existing parity (xor) constraints from xorro, where lacks expressiveness, even though these constraints fit perfectly for reasoning modes like sampling or model counting. To this end, this extended version covers the fundaments from parity constraints as well as the xorro system. Hence, we delve a little more in the examples and the proposed methodology over parity constraints. Finally, we discuss our results by showing the only representation available, that satisfies different properties from the classical logic xor operator, which is also consistent with the semantics of parity constraints from xorro. KW - answer set programming KW - combinatorial optimization problems KW - parity aggregate operator Y1 - 2020 U6 - https://doi.org/10.1016/j.entcs.2020.10.004 SN - 1571-0661 VL - 354 SP - 29 EP - 44 PB - Elsevier CY - Amsterdam [u.a.] ER - TY - THES A1 - Kluth, Stephan T1 - Quantitative modeling and analysis with FMC-QE T1 - Quantitative Modellierung und Analyse mit FMC-QE N2 - The modeling and evaluation calculus FMC-QE, the Fundamental Modeling Concepts for Quanti-tative Evaluation [1], extends the Fundamental Modeling Concepts (FMC) for performance modeling and prediction. In this new methodology, the hierarchical service requests are in the main focus, because they are the origin of every service provisioning process. Similar to physics, these service requests are a tuple of value and unit, which enables hierarchical service request transformations at the hierarchical borders and therefore the hierarchical modeling. Through reducing the model complexity of the models by decomposing the system in different hierarchical views, the distinction between operational and control states and the calculation of the performance values on the assumption of the steady state, FMC-QE has a scalable applica-bility on complex systems. According to FMC, the system is modeled in a 3-dimensional hierarchical representation space, where system performance parameters are described in three arbitrarily fine-grained hierarchi-cal bipartite diagrams. The hierarchical service request structures are modeled in Entity Relationship Diagrams. The static server structures, divided into logical and real servers, are de-scribed as Block Diagrams. The dynamic behavior and the control structures are specified as Petri Nets, more precisely Colored Time Augmented Petri Nets. From the structures and pa-rameters of the performance model, a hierarchical set of equations is derived. The calculation of the performance values is done on the assumption of stationary processes and is based on fundamental laws of the performance analysis: Little's Law and the Forced Traffic Flow Law. Little's Law is used within the different hierarchical levels (horizontal) and the Forced Traffic Flow Law is the key to the dependencies among the hierarchical levels (vertical). This calculation is suitable for complex models and allows a fast (re-)calculation of different performance scenarios in order to support development and configuration decisions. Within the Research Group Zorn at the Hasso Plattner Institute, the work is embedded in a broader research in the development of FMC-QE. While this work is concentrated on the theoretical background, description and definition of the methodology as well as the extension and validation of the applicability, other topics are in the development of an FMC-QE modeling and evaluation tool and the usage of FMC-QE in the design of an adaptive transport layer in order to fulfill Quality of Service and Service Level Agreements in volatile service based environments. This thesis contains a state-of-the-art, the description of FMC-QE as well as extensions of FMC-QE in representative general models and case studies. In the state-of-the-art part of the thesis in chapter 2, an overview on existing Queueing Theory and Time Augmented Petri Net models and other quantitative modeling and evaluation languages and methodologies is given. Also other hierarchical quantitative modeling frameworks will be considered. The description of FMC-QE in chapter 3 consists of a summary of the foundations of FMC-QE, basic definitions, the graphical notations, the FMC-QE Calculus and the modeling of open queueing networks as an introductory example. The extensions of FMC-QE in chapter 4 consist of the integration of the summation method in order to support the handling of closed networks and the modeling of multiclass and semaphore scenarios. Furthermore, FMC-QE is compared to other performance modeling and evaluation approaches. In the case study part in chapter 5, proof-of-concept examples, like the modeling of a service based search portal, a service based SAP NetWeaver application and the Axis2 Web service framework will be provided. Finally, conclusions are given by a summary of contributions and an outlook on future work in chapter 6. [1] Werner Zorn. FMC-QE - A New Approach in Quantitative Modeling. In Hamid R. Arabnia, editor, Procee-dings of the International Conference on Modeling, Simulation and Visualization Methods (MSV 2007) within WorldComp ’07, pages 280 – 287, Las Vegas, NV, USA, June 2007. CSREA Press. ISBN 1-60132-029-9. N2 - FMC-QE (Fundamental Modeling Concepts for Quantitative Evaluation [1]) ist eine auf FMC, den Fundamental Modeling Concepts, basierende Methodik zur Modellierung des Leistungsverhaltens von Systemen mit einem dazugehörenden Kalkül zur Erstellung von Leistungsvorhersagen wie Antwortzeiten und Durchsatz. In dieser neuen Methodik steht die Modellierung der hierarchischen Bedienanforderungen im Mittelpunkt, da sie der Ursprung aller dienstbasierenden Systeme sind. Wie in der Physik sind in FMC-QE die Bedienanforderungen Tupel aus Wert und Einheit, um Auftragstransformationen an Hierarchiegrenzen zu ermöglichen. Da die Komplexität durch eine Dekomposition in mehreren Sichten und in verschiedene hierarchische Schichten, die Unterscheidung von Operations- und Kontrollzuständen, sowie dazugehörige Berechungen unter Annahme der Stationarität reduziert wird, skaliert die Anwendbarkeit von FMC-QE auf komplexe Systeme. Gemäß FMC wird das zu modellierende System in einem 3-dimensionalen hierarchischen Beschreibungsraum dargestellt. Die quantitativen Kenngrößen der Systeme werden in drei beliebig frei-granularen hierarchischen bi-partiten Graphen beschrieben. Die hierarchische Struktur der Bedienanforderungen wird in Entity Relationship Diagrammen beschrieben. Die statischen Bedienerstrukturen, unterteilt in logische und reale Bediener, sind in Aufbaudiagrammen erläutert. Außerdem werden Petri Netze, genauer Farbige Zeit-behaftete Petri Netze, dazu verwendet, die dynamischen Abläufe, sowie die Kontrollflüsse im System zu beschreiben. Anschließend wird eine Menge von hierarchischen Gleichungen von der Struktur und den Parametern des Modells abgeleitet. Diese Gleichungen, die auf dem stationären Zustand des Systems beruhen, basieren auf den beiden Fundamental Gesetzen der Leistungsanalyse, dem Gesetz von Little und dem Verkehrsflussgesetz. Das Gesetz von Little definiert hierbei Beziehungen innerhalb einer hierarchischen Schicht (horizontal) und das Verkehrsflussgesetz wiederum Beziehungen zwischen hierarchischen Schichten (vertikal). Die Berechungen erlauben Leistungsvorhersagen für komplexe Systeme durch eine effiziente Berechnung von Leistungsgrößen für eine große Auswahl von System- und Lastkonfigurationen. Innerhalb der Forschungsgruppe von Prof. Dr.-Ing Werner Zorn am Hasso Plattner Institut an der Universität Potsdam ist die vorliegende Arbeit in einen größeren Forschungskontext im Bereich FMC-QE eingebettet. Während hier ein Fokus auf dem theoretischen Hintergrund, der Beschreibung und der Definition der Methodik als auch der Anwendbarkeit und Erweiterung gelegt wurde, sind andere Arbeiten auf dem Gebiet der Entwicklung einer Anwendung zur Modellierung und Evaluierung von Systemen mit FMC-QE bzw. der Verwendung von FMC-QE zur Entwicklung einer adaptiven Transportschicht zur Einhaltung von Dienstgüten (Quality of Service) und Dienstvereinbarungen (Service Level Agreements) in volatilen dienstbasierten Systemen beheimatet. Diese Arbeit umfasst einen Einblick in den Stand der Technik, die Beschreibung von FMC-QE sowie die Weiterentwicklung von FMC-QE in repräsentativen allgemeinen Modellen und Fallstudien. Das Kapitel 2: Stand der Technik gibt einen Überblick über die Warteschlangentheorie, Zeit-behaftete Petri Netze, weitere Leistungsbeschreibungs- und Leistungsvorhersagungstechniken sowie die Verwendung von Hierarchien in Leistungsbeschreibungstechniken. Die Beschreibung von FMC-QE in Kapitel 3 enthält die Erläuterung der Grundlagen von FMC-QE, die Beschreibung einiger Grundannahmen, der graphischen Notation, dem mathematischen Modell und einem erläuternden Beispiel. In Kapitel 4: Erweiterungen von FMC-QE wird die Behandlung weiterer allgemeiner Modelle, wie die Modellklasse von geschlossenen Netzen, Synchronisierung und Mehrklassen-Modelle beschrieben. Außerdem wird FMC-QE mit dem Stand der Technik verglichen. In Kapitel 5 werden Machbarkeitsstudien beschrieben. Schließlich werden in Kapitel 6 eine Zusammenfassung und ein Ausblick gegeben. [1] Werner Zorn. FMC-QE - A New Approach in Quantitative Modeling. In Hamid R. Arabnia, editor, Proceedings of the International Conference on Modeling, Simulation and Visualization Methods (MSV 2007) within WorldComp ’07, 280 – 287, Las Vegas, NV, USA, Juni 2007. CSREA Press. ISBN 1-60132-029-9. KW - FMC-QE KW - Quantitative Modellierung KW - Leistungsvorhersage KW - Warteschlangentheorie KW - Zeitbehaftete Petri Netze KW - FMC-QE KW - Quantitative Modeling KW - Performance Prediction KW - Queuing Theory KW - Time Augmented Petri Nets Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-52987 ER - TY - THES A1 - Ahmad, Nadeem T1 - People centered HMI’s for deaf and functionally illiterate users T1 - Menschen zentrierte Mensch-Maschine-Schnittstellen für Schwerhörige und ungeschulte Anwender N2 - The objective and motivation behind this research is to provide applications with easy-to-use interfaces to communities of deaf and functionally illiterate users, which enables them to work without any human assistance. Although recent years have witnessed technological advancements, the availability of technology does not ensure accessibility to information and communication technologies (ICT). Extensive use of text from menus to document contents means that deaf or functionally illiterate can not access services implemented on most computer software. Consequently, most existing computer applications pose an accessibility barrier to those who are unable to read fluently. Online technologies intended for such groups should be developed in continuous partnership with primary users and include a thorough investigation into their limitations, requirements and usability barriers. In this research, I investigated existing tools in voice, web and other multimedia technologies to identify learning gaps and explored ways to enhance the information literacy for deaf and functionally illiterate users. I worked on the development of user-centered interfaces to increase the capabilities of deaf and low literacy users by enhancing lexical resources and by evaluating several multimedia interfaces for them. The interface of the platform-independent Italian Sign Language (LIS) Dictionary has been developed to enhance the lexical resources for deaf users. The Sign Language Dictionary accepts Italian lemmas as input and provides their representation in the Italian Sign Language as output. The Sign Language dictionary has 3082 signs as set of Avatar animations in which each sign is linked to a corresponding Italian lemma. I integrated the LIS lexical resources with MultiWordNet (MWN) database to form the first LIS MultiWordNet(LMWN). LMWN contains information about lexical relations between words, semantic relations between lexical concepts (synsets), correspondences between Italian and sign language lexical concepts and semantic fields (domains). The approach enhances the deaf users’ understanding of written Italian language and shows that a relatively small set of lexicon can cover a significant portion of MWN. Integration of LIS signs with MWN made it useful tool for computational linguistics and natural language processing. The rule-based translation process from written Italian text to LIS has been transformed into service-oriented system. The translation process is composed of various modules including parser, semantic interpreter, generator, and spatial allocation planner. This translation procedure has been implemented in the Java Application Building Center (jABC), which is a framework for extreme model driven design (XMDD). The XMDD approach focuses on bringing software development closer to conceptual design, so that the functionality of a software solution could be understood by someone who is unfamiliar with programming concepts. The transformation addresses the heterogeneity challenge and enhances the re-usability of the system. For enhancing the e-participation of functionally illiterate users, two detailed studies were conducted in the Republic of Rwanda. In the first study, the traditional (textual) interface was compared with the virtual character-based interactive interface. The study helped to identify usability barriers and users evaluated these interfaces according to three fundamental areas of usability, i.e. effectiveness, efficiency and satisfaction. In another study, we developed four different interfaces to analyze the usability and effects of online assistance (consistent help) for functionally illiterate users and compared different help modes including textual, vocal and virtual character on the performance of semi-literate users. In our newly designed interfaces the instructions were automatically translated in Swahili language. All the interfaces were evaluated on the basis of task accomplishment, time consumption, System Usability Scale (SUS) rating and number of times the help was acquired. The results show that the performance of semi-literate users improved significantly when using the online assistance. The dissertation thus introduces a new development approach in which virtual characters are used as additional support for barely literate or naturally challenged users. Such components enhanced the application utility by offering a variety of services like translating contents in local language, providing additional vocal information, and performing automatic translation from text to sign language. Obviously, there is no such thing as one design solution that fits for all in the underlying domain. Context sensitivity, literacy and mental abilities are key factors on which I concentrated and the results emphasize that computer interfaces must be based on a thoughtful definition of target groups, purposes and objectives. N2 - Das Ziel und die Motivation hinter dieser Forschungsarbeit ist es, Anwendungen mit benutzerfreundlichen Schnittstellen für Gehörlose und Analphabeten bereitzustellen, welche es ihnen ermöglichen ohne jede menschliche Unterstützung zu arbeiten. Obwohl es in den letzten Jahren technologische Fortschritte gab, garantiert allein die Verfügbarkeit von Technik nicht automatisch die Zugänglichkeit zu Informations- und Kommunikationstechnologien (IKT). Umfangreiche Verwendung von Texten in Menüs bis hin zu Dokumenten führen dazu, dass Gehörlose und funktionale Analphabeten auf diese Dienste, die auf Computersystemen existieren, nicht zugreifen können. Folglich stellen die meisten bestehenden EDV-Anwendungen für diejenigen eine Hürde dar, die nicht fließend lesen können. Onlinetechnologien für solche Art von Gruppen sollten in kontinuierlichem Austausch mit den Hauptnutzern entwickelt werden und gründliche Untersuchung ihrer Einschränkungen, Anforderungen und Nutzungsbarrieren beinhalten. In dieser Forschungsarbeit untersuche ich vorhandene Tools im Bereich von Sprach-, Web- und anderen Multimedia-Technologien, um Lernlücken zu identifizieren und Wege zu erforschen, welche die Informationsalphabetisierung für Gehörlose und Analphabeten erweitert. Ich arbeitete an der Entwicklung einer nutzerzentrierten Schnittstelle, um die Fähigkeiten von Gehörlosen und Nutzern mit schlechter Alphabetisierung durch Verbesserung der lexikalischen Ressourcen und durch Auswertung mehrerer Multimediaschnittstellen zu erhöhen. Die Schnittstelle des plattformunabhängigen, italienischen Gebärdensprachen (LIS) Wörterbuches wurde entwickelt, um die lexikalischen Quellen für gehörlose Anwender zu verbessern. Ich integriere die LIS-lexikalischen Ressourcen mit der MultiWordNet (MWN)-Datenbank, um das erste LIS MultiWordNet (LMWN) zu bilden. LMWN enthält Informationen über lexikalische Beziehungen zwischen Wörtern, semantische Beziehungen zwischen lexikalischen Konzepten (Synsets), Gemeinsamkeiten zwischen italienischer und Gebärdensprache-lexikalischen Konzepten und semantischen Feldern (Domänen). Der Ansatz erhöht das Verständnis der tauben Nutzer geschriebene, italienischen Sprache zu verstehen und zeigt, dass ein relativ kleiner Satz an Lexika den wesentlichen Teil der MWN abdecken kann. Die Integration von LIS-Zeichen mit MWN machte es zu einem nützlichen Werkzeug für Linguistik und Sprachverarbeitung. Der regelbasierte Übersetzungsprozess von geschriebenem, italienischem Text zu LIS wurde in ein Service-orientiertes System überführt. Der Übersetzungsprozess besteht aus verschiedenen Modulen, einschließlich einem Parser, einem semantischen Interpreter, einem Generator und einem räumlichen Zuordnungs-Planer. Diese Übersetzungsprozedur wurde im Java Application Building Center (jABC) implementiert, welches ein Framework für das eXtrem Model Driven Design (XMDD) ist. Der XMDD-Ansatz konzentriert sich darauf die Softwareentwicklung näher zum konzeptionellen Design zu bringen, sodass die Funktionalität einer Softwarelösung von jemandem verstanden werden kann, der mit Programmierkonzepten unvertraut ist. Die Transformation richtet sich an die heterogene Herausforderung und verbessert die Wiederverwendbarkeit des Systems. Zur Verbesserung der E-Partizipation der funktionalen Analphabeten wurden zwei detaillierte Studien in der Republik Ruanda durchgeführt. In der ersten Studie wurde die traditionelle, textuelle Schnittstelle mit der virtuellen, charakterbasierten, interaktiven Schnittstelle verglichen. Diese Studie hat dazu beigetragen Barrieren der Benutzerfreundlichkeit zu identifizieren. Anwender evaluierten die Schnittstellen bezüglich drei grundlegender Bereiche der Benutzerfreundlichkeit: Effektivität, Effizienz und Zufriedenstellung bei der Problemlösung. In einer anderen Studie entwickelten wir vier verschiedene Schnittstellen, um die Benutzerfreundlichkeit und die Effekte der Online-Hilfe (konsequente Hilfe) für funktionale Analphabeten zu analysieren und verglichen verschiedene Hilfsmodi (einschließlich zusätzlicher Textinformationen, Audio-Unterstützung und mit Hilfe eines virtuellen Charakters) bezüglich der Verbesserung der Leistungsfähigkeit von teilweisen Analphabeten, um ihre Zielstellung zu erreichen. In unseren neu gestalteten Schnittstellen wurden Anweisungen automatisch in die Swahili Sprache übersetzt. Alle Schnittstellen wurden auf der Grundlage der Aufgabenbewältigung, des Zeitaufwands, der System Usability Scale (SUS) Rate und der Anzahl der Hilfegesuche bewertet. Die Ergebnisse zeigen, dass die Leistungsfähigkeit der teilweisen Analphabeten bei Nutzung der Online-Hilfe signifikant verbessert wurde. Diese Dissertation stellt somit einen neuen Entwicklungsansatz dar, bei welchem virtuelle Charaktere als zusätzliche Unterstützung genutzt werden, um Nutzer, die kaum lesen können oder sonstig eingeschränkt sind, zu unterstützen. Solche Komponenten erweitern die Anwendungsnutzbarkeit indem sie eine Vielzahl von Diensten wie das Übersetzen von Inhalten in eine Landessprache, das Bereitstellen von zusätzlichen akustisch, gesprochenen Informationen und die Durchführung einer automatischen Übersetzung von Text in Gebärdensprache bereitstellen. Offensichtlich gibt ist keine One Design-Lösung, die für alle zugrundeliegenden Domänen passt. Kontextsensitivität, Alphabetisierung und geistigen Fähigkeiten sind Schlüsselfaktoren, auf welche ich mich konzentriere. Die Ergebnisse unterstreichen, dass Computerschnittstellen auf einer exakten Definition der Zielgruppen, dem Zweck und den Zielen basieren müssen. KW - Mensch-Computer-Interaktion KW - assistive Technologien KW - HCI KW - user interfaces KW - sign language KW - online assistance KW - assistive technologies Y1 - 2014 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-70391 ER - TY - THES A1 - Al-Saffar, Loay Talib Ahmed T1 - Analysing prerequisites, expectations, apprehensions, and attitudes of University students studying computer science Y1 - 2016 ER - TY - BOOK ED - Lambrecht, Anna-Lena ED - Margaria, Tizian T1 - Process design for natural scientists BT - an agile model-driven approach T3 - Communications in computer and information science ; 500 N2 - This book presents an agile and model-driven approach to manage scientific workflows. The approach is based on the Extreme Model Driven Design (XMDD) paradigm and aims at simplifying and automating the complex data analysis processes carried out by scientists in their day-to-day work. Besides documenting the impact the workflow modeling might have on the work of natural scientists, this book serves three major purposes: 1. It acts as a primer for practitioners who are interested to learn how to think in terms of services and workflows when facing domain-specific scientific processes. 2. It provides interesting material for readers already familiar with this kind of tools, because it introduces systematically both the technologies used in each case study and the basic concepts behind them. 3. As the addressed thematic field becomes increasingly relevant for lectures in both computer science and experimental sciences, it also provides helpful material for teachers that plan similar courses. Y1 - 2014 SN - 978-3-662-45005-5 PB - Springer CY - Wiesbaden ER - TY - THES A1 - Wust, Johannes T1 - Mixed workload managment for in-memory databases BT - executing mixed workloads of enterprise applications with TAMEX Y1 - 2015 ER - TY - JOUR A1 - Teske, Daniel T1 - Geocoder accuracy ranking JF - Process design for natural scientists: an agile model-driven approach N2 - Finding an address on a map is sometimes tricky: the chosen map application may be unfamiliar with the enclosed region. There are several geocoders on the market, they have different databases and algorithms to compute the query. Consequently, the geocoding results differ in their quality. Fortunately the geocoders provide a rich set of metadata. The workflow described in this paper compares this metadata with the aim to find out which geocoder is offering the best-fitting coordinate for a given address. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 161 EP - 174 PB - Springer CY - Berlin ER - TY - JOUR A1 - Sens, Henriette T1 - Web-Based map generalization tools put to the test: a jABC workflow JF - Process Design for Natural Scientists: an agile model-driven approach N2 - Geometric generalization is a fundamental concept in the digital mapping process. An increasing amount of spatial data is provided on the web as well as a range of tools to process it. This jABC workflow is used for the automatic testing of web-based generalization services like mapshaper.org by executing its functionality, overlaying both datasets before and after the transformation and displaying them visually in a .tif file. Mostly Web Services and command line tools are used to build an environment where ESRI shapefiles can be uploaded, processed through a chosen generalization service and finally visualized in Irfanview. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 175 EP - 185 PB - Springer CY - Berlin ER - TY - JOUR A1 - Noack, Franziska T1 - CREADED: Colored-Relief application for digital elevation data JF - Process design for natural scientists: an agile model-driven approach N2 - In the geoinformatics field, remote sensing data is often used for analyzing the characteristics of the current investigation area. This includes DEMs, which are simple raster grids containing grey scales representing the respective elevation values. The project CREADED that is presented in this paper aims at making these monochrome raster images more significant and more intuitively interpretable. For this purpose, an executable interactive model for creating a colored and relief-shaded Digital Elevation Model (DEM) has been designed using the jABC framework. The process is based on standard jABC-SIBs and SIBs that provide specific GIS functions, which are available as Web services, command line tools and scripts. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 186 EP - 199 PB - Springer CY - Berlin ER - TY - JOUR A1 - Respondek, Tobias T1 - A workflow for computing potential areas for wind turbines JF - Process design for natural scientists: an agile model-driven approach N2 - This paper describes the implementation of a workflow model for service-oriented computing of potential areas for wind turbines in jABC. By implementing a re-executable model the manual effort of a multi-criteria site analysis can be reduced. The aim is to determine the shift of typical geoprocessing tools of geographic information systems (GIS) from the desktop to the web. The analysis is based on a vector data set and mainly uses web services of the “Center for Spatial Information Science and Systems” (CSISS). This paper discusses effort, benefits and problems associated with the use of the web services. Y1 - 2014 SN - 978-3-662-45005-5 IS - 500 SP - 200 EP - 215 PB - Springer CY - Berlin ER - TY - JOUR A1 - Scheele, Lasse T1 - Location analysis for placing artificial reefs JF - Process design for natural scientists: an agile model-driven approach N2 - Location analyses are among the most common tasks while working with spatial data and geographic information systems. Automating the most frequently used procedures is therefore an important aspect of improving their usability. In this context, this project aims to design and implement a workflow, providing some basic tools for a location analysis. For the implementation with jABC, the workflow was applied to the problem of finding a suitable location for placing an artificial reef. For this analysis three parameters (bathymetry, slope and grain size of the ground material) were taken into account, processed, and visualized with the The Generic Mapping Tools (GMT), which were integrated into the workflow as jETI-SIBs. The implemented workflow thereby showed that the approach to combine jABC with GMT resulted in an user-centric yet user-friendly tool with high-quality cartographic outputs. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 216 EP - 228 PB - Springer CY - Berlin ER - TY - JOUR A1 - Holler, Robin T1 - GraffDok - a graffiti documentation application JF - Process design for natural scientists: an agile model-driven approach N2 - GraffDok is an application helping to maintain an overview over sprayed images somewhere in a city. At the time of writing it aims at vandalism rather than at beautiful photographic graffiti in an underpass. Looking at hundreds of tags and scribbles on monuments, house walls, etc. it would be interesting to not only record them in writing but even make them accessible electronically, including images. GraffDok’s workflow is simple and only requires an EXIF-GPS-tagged photograph of a graffito. It automatically determines its location by using reverse geocoding with the given GPS-coordinates and the Gisgraphy WebService. While asking the user for some more meta data, GraffDok analyses the image in parallel with this and tries to detect fore- and background – before extracting the drawing lines and make them stand alone. The command line based tool ImageMagick is used here as well as for accessing EXIF data. Any meta data is written to csv-files, which will stay easily accessible and can be integrated in TeX-files as well. The latter ones are converted to PDF at the end of the workflow, containing a table about all graffiti and a summary for each – including the generated characteristic graffiti pattern image. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 239 EP - 251 PB - Springer CY - Berlin ER - TY - JOUR A1 - Reso, Judith ED - Lambrecht, Anna-Lena ED - Margaria, Tiziana T1 - Protein Classification Workflow JF - Process Design for Natural Scientists: an agile model-driven approach N2 - The protein classification workflow described in this report enables users to get information about a novel protein sequence automatically. The information is derived by different bioinformatic analysis tools which calculate or predict features of a protein sequence. Also, databases are used to compare the novel sequence with known proteins. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 65 EP - 72 PB - Springer Verlag CY - Berlin ER - TY - JOUR A1 - Schulze, Gunnar T1 - Workflow for rapid metagenome analysis JF - Process design for natural scientists: an agile model-driven approach N2 - Analyses of metagenomes in life sciences present new opportunities as well as challenges to the scientific community and call for advanced computational methods and workflows. The large amount of data collected from samples via next-generation sequencing (NGS) technologies render manual approaches to sequence comparison and annotation unsuitable. Rather, fast and efficient computational pipelines are needed to provide comprehensive statistics and summaries and enable the researcher to choose appropriate tools for more specific analyses. The workflow presented here builds upon previous pipelines designed for automated clustering and annotation of raw sequence reads obtained from next-generation sequencing technologies such as 454 and Illumina. Employing specialized algorithms, the sequence reads are processed at three different levels. First, raw reads are clustered at high similarity cutoff to yield clusters which can be exported as multifasta files for further analyses. Independently, open reading frames (ORFs) are predicted from raw reads and clustered at two strictness levels to yield sets of non-redundant sequences and ORF families. Furthermore, single ORFs are annotated by performing searches against the Pfam database Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 88 EP - 100 PB - Springer CY - Berlin ER - TY - JOUR A1 - Vierheller, Janine ED - Lambrecht, Anna-Lena ED - Margaria, Tiziana T1 - Exploratory Data Analysis JF - Process Design for Natural Scientists: an agile model-driven approach N2 - In bioinformatics the term exploratory data analysis refers to different methods to get an overview of large biological data sets. Hence, it helps to create a framework for further analysis and hypothesis testing. The workflow facilitates this first important step of the data analysis created by high-throughput technologies. The results are different plots showing the structure of the measurements. The goal of the workflow is the automatization of the exploratory data analysis, but also the flexibility should be guaranteed. The basic tool is the free software R. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 110 EP - 126 PB - Axel Springer Verlag CY - Berlin ER - TY - JOUR A1 - Schütt, Christine T1 - Identification of differentially expressed genes JF - Process design for natural scientists: an agile model-driven approach N2 - With the jABC it is possible to realize workflows for numerous questions in different fields. The goal of this project was to create a workflow for the identification of differentially expressed genes. This is of special interest in biology, for it gives the opportunity to get a better insight in cellular changes due to exogenous stress, diseases and so on. With the knowledge that can be derived from the differentially expressed genes in diseased tissues, it becomes possible to find new targets for treatment. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 127 EP - 139 PB - Springer CY - Berlin ER - TY - JOUR A1 - Kuntzsch, Christian T1 - Visualization of data transfer paths JF - Process design for natural scientists: an agile model-driven approach N2 - A workflow for visualizing server connections using the Google Maps API was built in the jABC. It makes use of three basic services: An XML-based IP address geolocation web service, a command line tool and the Static Maps API. The result of the workflow is an URL leading to an image file of a map, showing server connections between a client and a target host. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 140 EP - 148 PB - Springer CY - Berlin ER - TY - JOUR A1 - Hibbe, Marcel ED - Lambrecht, Anna-Lena ED - Margaria, Tiziana T1 - Spotlocator - Guess Where the Photo Was Taken! JF - Process Design for Natural Scientists: an agile model-driven approach N2 - Spotlocator is a game wherein people have to guess the spots of where photos were taken. The photos of a defined area for each game are from panoramio.com. They are published at http://spotlocator. drupalgardens.com with an ID. Everyone can guess the photo spots by sending a special tweet via Twitter that contains the hashtag #spotlocator, the guessed coordinates and the ID of the photo. An evaluation is published for all tweets. The players are informed about the distance to the real photo spots and the positions are shown on a map. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 149 EP - 160 PB - Springer Verlag CY - Berlin ER - TY - JOUR A1 - Blaese, Leif T1 - Data mining for unidentified protein squences JF - Process design for natural scientists: an agile model-driven approach N2 - Through the use of next generation sequencing (NGS) technology, a lot of newly sequenced organisms are now available. Annotating those genes is one of the most challenging tasks in sequence biology. Here, we present an automated workflow to find homologue proteins, annotate sequences according to function and create a three-dimensional model. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 73 EP - 87 PB - Springer CY - Berlin ER - TY - JOUR A1 - Lis, Monika ED - Lambrecht, Anna-Lena ED - Margaria, Tiziana T1 - Constructing a Phylogenetic Tree JF - Process Design for Natural Scientists: an agile model-driven approach N2 - In this project I constructed a workflow that takes a DNA sequence as input and provides a phylogenetic tree, consisting of the input sequence and other sequences which were found during a database search. In this phylogenetic tree the sequences are arranged depending on similarities. In bioinformatics, constructing phylogenetic trees is often used to explore the evolutionary relationships of genes or organisms and to understand the mechanisms of evolution itself. Y1 - 2014 SN - 978-3-662-45005-5 SN - 1865-0929 IS - 500 SP - 101 EP - 109 PB - Springer Verlag CY - Berlin ER - TY - THES A1 - Lincke, Jens T1 - Evolving Tools in a Collaborative Self-supporting Development Environment Y1 - 2014 ER - TY - THES A1 - Gharib, Mona T1 - Incremental answer set programming Y1 - 2008 CY - Potsdam ER - TY - BOOK ED - Rabe, Bernhard ED - Rasche, Andreas T1 - Proceedings of the 2nd International Workshop on e-learning and Virtual and Remote Laboratories T3 - Technische Berichte des Hasso-Plattner-Instituts für Softwaresystemtechnik an der Universität Potsda Y1 - 2008 SN - 978-3-940793-17-1 SN - 1613-5652 VL - 21 PB - Universitätsverlag Potsdam CY - Potsdam ER - TY - BOOK A1 - de Carvalho, Jackson Marques A1 - Jürgensen, Helmut T1 - Document authoring environments and authoring mathematics T3 - Preprint / Universität Potsdam, Institut für Informatik Y1 - 2008 SN - 0946-7580 VL - 2008, 1 PB - Univ. CY - Potsdam ER - TY - BOOK A1 - Goessel, Michael A1 - Ocheretny, Vitaly A1 - Sogomonyan, Egor S. A1 - Marienfeld, Daniel T1 - New methods of concurrent checking T3 - Frontiers in electronic testing Y1 - 2008 SN - 978-1-402-08419-5 U6 - https://doi.org/10.1007/978-1-4020-8420-1 VL - 42 PB - Springer CY - Dordrecht; Heidelberg ER - TY - BOOK A1 - Tepoyan, Liparit T1 - The Mixed problem for a degenerate operator equation T3 - Preprint / Universität Potsdam, Institut für Mathematik, Arbeitsgruppe Partiell Y1 - 2008 SN - 1437-739X PB - Univ. CY - Potsdam ER - TY - THES A1 - Li, Nanjun T1 - Modeling, Simulation and Evaluation of TCP/IP Networks Y1 - 2008 CY - Potsdam ER - TY - THES A1 - Li, Nanjun T1 - Modeling, simulation and evaluation of TCP/IP Networks Y1 - 2008 ER - TY - BOOK A1 - Brauer, Uwe A1 - Karp, Lavi T1 - Well-posedness of Einstein-Euler Systems in asymptotically flat spacetimes T3 - Preprint / Universität Potsdam, Institut für Mathematik, Arbeitsgruppe Partiell Y1 - 2008 SN - 1437-739X PB - Univ. CY - Potsdam ER - TY - GEN A1 - Marques de Carvalho, Jackson W. A1 - Jürgensen, Helmut T1 - Flexible Structured Mathematics Notation : IADIS, International Conference Interfaces and Human Computer Interaction, Lisabon, 2007 T2 - Preprint / Universität Potsdam, Institut für Informatik Y1 - 2007 SN - 0946-7580 VL - 2007, 1 PB - Univ. CY - Potsdam ER - TY - BOOK A1 - Margaria, Tiziana A1 - Kubczak, Christian A1 - Steffen, Bernhard T1 - Bio-jETI: a Service Integration, Design, and Provisioning Platform for Orchestrated Bioinformatics Processes - ("part of From Components to Processes") T3 - Preprint / Universität Potsdam, Institut für Informatik Y1 - 2007 SN - 0946-7580 VL - 2007, 4 PB - Univ. CY - Potsdam ER - TY - BOOK A1 - Weske, Mathias T1 - Business Process Management : Concepts, Languages, Architectures Y1 - 2007 SN - 978-3-540-73521-2 U6 - https://doi.org/10.1007/978-3-540-73522-9 PB - Springer-Verlag Berlin Heidelberg CY - Berlin, Heidelberg ER - TY - BOOK A1 - Margaria, Tiziana ED - Messnarz, Richard T1 - Proceedings / EuroSPI 2007, European Software Process Improvement, 26.-28.09.2007, University of Potsdam, Germany Y1 - 2007 SN - 978-3-9809145-6-7 PB - ASQF CY - Erlangen ER - TY - THES A1 - Puhlmann, Frank T1 - On the application of a theory for mobile systems to business process management Y1 - 2007 CY - Potsdam ER - TY - BOOK A1 - Abrahamsson, Pekka A1 - Baddoo, Nathan A1 - Margaria, Tiziana A1 - Messnarz, Richard T1 - Software Process Improvement : 14th europea conference, EuroSpi 2007, Potsdam, Germany, September 26-28, 2007 ; Proceedings T3 - Lecture Notes in Computer Science Y1 - 2007 VL - 4764 PB - Springer CY - Berlin ER - TY - BOOK A1 - Polyvyanyy, Artem A1 - Kuropka, Dominik T1 - A Quantitative Evalution of the Enhanced Topic-based Vector Space Model T3 - Technische Berichte des Hasso-Plattner-Instituts für Softwaresystemtechnik an der Universität Potsda Y1 - 2007 SN - 978-3-939469-95-7 SN - 1613-5652 VL - 19 PB - Universitätsverlag Potsdam CY - Potsdam ER - TY - THES A1 - Rzeha, Jan T1 - Generation and Storage of Diagnosis Data On-Chip Y1 - 2007 CY - Potsdam ER - TY - JOUR A1 - Grell, Susanne A1 - Schaub, Torsten H. A1 - Selbig, Joachim T1 - Modelling biological networks by action languages via set programming Y1 - 2006 UR - http://www.cs.uni-potsdam.de/wv/pdfformat/gebsch06c.pdf U6 - https://doi.org/10.1007/11799573 SN - 0302-9743 ER - TY - JOUR A1 - Delgrande, James Patrick A1 - Schaub, Torsten H. A1 - Tompits, Hans T1 - A Preference-Based Framework for Updating logic Programs : preliminary reports Y1 - 2006 UR - http://www.easychair.org/FLoC-06/PREFS-preproceedings.pdf ER - TY - JOUR A1 - Gressmann, Jean A1 - Janhunen, Tomi A1 - Mercer, Robert E. A1 - Schaub, Torsten H. A1 - Thiele, Sven A1 - Tichy, Richard T1 - On probing and multi-threading in platypus Y1 - 2006 UR - http://www2.in.tu-clausthal.de/~tmbehrens/NMR_Proc_TR4.pdf ER - TY - BOOK ED - Jürgensen, Helmut T1 - Accessible Media : Pre-Proceedings of a Workshop Potsdam 8-9 May, 2006 T3 - Preprint / Universität Potsdam, Institut für Informatik Y1 - 2006 SN - 0946-7580 VL - 2006, 7 PB - Univ. CY - Potsdam ER - TY - BOOK A1 - Krahmer, Sebastian T1 - Generating runtime call graphs T3 - Preprint / Universität Potsdam, Institut für Informatik Y1 - 2006 SN - 0946-7580 VL - 2006, 8 PB - Univ. CY - Potsdam ER - TY - THES A1 - Leininger, Andreas T1 - New diagnosis and test methods with high compaction rates Y1 - 2006 SN - 3-86664-066-8 PB - Mensch & Buch Verl. CY - Berlin ER - TY - JOUR A1 - Anger, Christian A1 - Gebser, Martin A1 - Schaub, Torsten H. T1 - Approaching the core of unfounded sets Y1 - 2006 UR - http://www.cs.uni-potsdam.de/wv/pdfformat/angesc06a.pdf ER - TY - JOUR A1 - Shenoy, Pradeep A1 - Krauledat, Matthias A1 - Blankertz, Benjamin A1 - Rao, Rajesh P. N. A1 - Müller, Klaus-Robert T1 - Towards adaptive classification for BCI N2 - Non-stationarities are ubiquitous in EEG signals. They are especially apparent in the use of EEG-based brain- computer interfaces (BCIs): (a) in the differences between the initial calibration measurement and the online operation of a BCI, or (b) caused by changes in the subject's brain processes during an experiment (e.g. due to fatigue, change of task involvement, etc). In this paper, we quantify for the first time such systematic evidence of statistical differences in data recorded during offline and online sessions. Furthermore, we propose novel techniques of investigating and visualizing data distributions, which are particularly useful for the analysis of (non-) stationarities. Our study shows that the brain signals used for control can change substantially from the offline calibration sessions to online control, and also within a single session. In addition to this general characterization of the signals, we propose several adaptive classification schemes and study their performance on data recorded during online experiments. An encouraging result of our study is that surprisingly simple adaptive methods in combination with an offline feature selection scheme can significantly increase BCI performance Y1 - 2006 UR - http://iopscience.iop.org/1741-2552/3/1/R02/ U6 - https://doi.org/10.1088/1741-2560/3/1/R02 ER - TY - JOUR A1 - Bobda, Christophe T1 - Special issue on ReCoSoC 2007 : editorial Y1 - 2009 UR - http://www.sciencedirect.com/science/journal/01419331 U6 - https://doi.org/10.1016/j.micpro.2009.01.001 SN - 0141-9331 ER - TY - JOUR A1 - Blankertz, Benjamin A1 - Dornhege, Guido A1 - Krauledat, Matthias A1 - Müller, Klaus-Robert A1 - Kunzmann, Volker A1 - Losch, Florian A1 - Curio, Gabriel T1 - The Berlin brain-computer interface : EEG-based communication without subject training N2 - The Berlin Brain-Computer Interface (BBCI) project develops a noninvasive BCI system whose key features are 1) the use of well-established motor competences as control paradigms, 2) high-dimensional features from 128-channel electroencephalogram (EEG), and 3) advanced machine learning techniques. As reported earlier, our experiments demonstrate that very high information transfer rates can be achieved using the readiness potential (RP) when predicting the laterality of upcoming left-versus right-hand movements in healthy subjects. A more recent study showed that the RP similarily accompanies phantom movements in arm amputees, but the signal strength decreases with longer loss of the limb. In a complementary approach, oscillatory features are used to discriminate imagined movements (left hand versus right hand versus foot). In a recent feedback study with six healthy subjects with no or very little experience with BCI control, three subjects achieved an information transfer rate above 35 bits per minute (bpm), and further two subjects above 24 and 15 bpm, while one subject could not achieve any BCI control. These results are encouraging for an EEG-based BCI system in untrained subjects that is independent of peripheral nervous system activity and does not rely on evoked potentials even when compared to results with very well-trained subjects operating other BCI systems Y1 - 2006 UR - http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?punumber=7333 U6 - https://doi.org/10.1109/Tnsre.2006.875557 SN - 1534-4320 ER - TY - THES A1 - Müller, Stephan Heinz T1 - Aggregates Caching for Enterprise Applications N2 - The introduction of columnar in-memory databases, along with hardware evolution, has made the execution of transactional and analytical enterprise application workloads on a single system both feasible and viable. Yet, we argue that executing analytical aggregate queries directly on the transactional data can decrease the overall system performance. Despite the aggregation capabilities of columnar in-memory databases, the direct access to records of a materialized aggregate is always more efficient than aggregating on the fly. The traditional approach to materialized aggregates, however, introduces significant overhead in terms of materialized view selection, maintenance, and exploitation. When this overhead is handled by the application, it increases the application complexity, and can slow down the transactional throughput of inserts, updates, and deletes. In this thesis, we motivate, propose, and evaluate the aggregate cache, a materialized aggregate engine in the main-delta architecture of a columnar in-memory database that provides efficient means to handle costly aggregate queries of enterprise applications. For our design, we leverage the specifics of the main-delta architecture that separates a table into a main and delta partition. The central concept is to only cache the partial aggregate query result as defined on the main partition of a table, because the main partition is relatively stable as records are only inserted into the delta partition. We contribute by proposing incremental aggregate maintenance and query compensation techniques for mixed workloads of enterprise applications. In addition, we introduce aggregate profit metrics that increase the likelihood of persisting the most profitable aggregates in the aggregate cache. Query compensation and maintenance of materialized aggregates based on joins of multiple tables is expensive due to the partitioned tables in the main-delta architecture. Our analysis of enterprise applications has revealed several data schema and workload patterns. This includes the observation that transactional data is persisted in header and item tables, whereas in many cases, the insertion of related header and item records is executed in a single database transaction. We contribute by proposing an approach to transport these application object semantics to the database system and optimize the query processing using the aggregate cache by applying partition pruning and predicate pushdown techniques. For the experimental evaluation, we propose the FICO benchmark that is based on data from a productive ERP system with extracted mixed workloads. Our evaluation reveals that the aggregate cache can accelerate the execution of aggregate queries up to a factor of 60 whereas the speedup highly depends on the number of aggregated records in the main and delta partitions. In mixed workloads, the proposed aggregate maintenance and query compensation techniques perform up to an order of magnitude better than traditional materialized aggregate maintenance approaches. The introduced aggregate profit metrics outperform existing costbased metrics by up to 20%. Lastly, the join pruning and predicate pushdown techniques can accelerate query execution in the aggregate cache in the presence of multiple partitioned tables by up to an order of magnitude. Y1 - 2016 ER - TY - JOUR A1 - Willig, Andreas A1 - Mitschke, Robert T1 - Results of bit error measurements with sensor nodes and casuistic consequences for design of energy-efficient error control schemes N2 - For the proper design of energy-efficient error control schemes some insight into channel error patterns is needed. This paper presents bit error and packet loss measurements taken with sensor nodes running the popular RFM Y1 - 2006 SN - 978-3-540-32158-3 ER - TY - JOUR A1 - Rozinat, A A1 - Van der Aalst, Wil M. P. T1 - Conformance testing: Measuring the fit and appropriateness of event logs and process models N2 - Most information systems log events (e.g., transaction logs, audit traits) to audit and monitor the processes they support. At the same time, many of these processes have been explicitly modeled. For example, SAP R/3 logs events in transaction logs and there are EPCs (Event-driven Process Chains) describing the so-called reference models. These reference models describe how the system should be used. The coexistence of event logs and process models raises an interesting question: "Does the event log conform to the process model and vice versa?". This paper demonstrates that there is not a simple answer to this question. To tackle the problem, we distinguish two dimensions of conformance: fitness (the event log may be the result of the process modeled) and appropriateness (the model is a likely candidate from a structural and behavioral point of view). Different metrics have been defined and a Conformance Checker has been implemented within the ProM Framework Y1 - 2006 ER - TY - JOUR A1 - Gerbser, Martin A1 - Schaub, Torsten H. T1 - Tableau calculi for answer set programming Y1 - 2006 UR - http://www.cs.uni-potsdam.de/wv/pdfformat/gebsch06c.pdf U6 - https://doi.org/10.1007/11799573 SN - 0302-9743 ER - TY - JOUR A1 - Konczak, Kathrin T1 - Voting Theory in Answer Set Programming Y1 - 2006 ER - TY - JOUR A1 - Anger, Christian A1 - Gebser, Martin A1 - Janhunen, Tomi A1 - Schaub, Torsten H. T1 - What's a head without a body? Y1 - 2006 ER - TY - JOUR A1 - Gerbser, Martin A1 - Lee, Joohyung A1 - Lierler, Yuliya T1 - Elementary sets for logic programs Y1 - 2006 SN - 978-1-57735-281-5 ER - TY - JOUR A1 - Gerbser, Martin A1 - Schaub, Torsten H. T1 - Characterizing (ASP) inferences by unit propagation Y1 - 2006 ER - TY - JOUR A1 - Konczak, Kathrin T1 - Weak order equivalence for Logic Programs with Prefernces Y1 - 2006 ER - TY - JOUR A1 - Delgrande, James Patrick A1 - Schaub, Torsten H. A1 - Tompits, Hans T1 - A preference-based framework for updating logic programs Y1 - 2007 SN - 978-3-540- 72199-4 ER - TY - JOUR A1 - Mileo, Alessandra A1 - Schaub, Torsten H. T1 - Qualitative constraint enforcement in advanced policy specification Y1 - 2007 ER - TY - JOUR A1 - Delgrande, James Patrick A1 - Lang, Jérôme A1 - Schaub, Torsten H. T1 - Belief change based on global minimisation Y1 - 2007 ER - TY - JOUR A1 - Konczak, Kathrin A1 - Linke, Thomas A1 - Schaub, Torsten H. T1 - Graphs and colorings for answer set programming N2 - We investigate the usage of rule dependency graphs and their colorings for characterizing and computing answer sets of logic programs. This approach provides us with insights into the interplay between rules when inducing answer sets. We start with different characterizations of answer sets in terms of totally colored dependency graphs that differ ill graph-theoretical aspects. We then develop a series of operational characterizations of answer sets in terms of operators on partial colorings. In analogy to the notion of a derivation in proof theory, our operational characterizations are expressed as (non-deterministically formed) sequences of colorings, turning an uncolored graph into a totally colored one. In this way, we obtain an operational framework in which different combinations of operators result in different formal properties. Among others, we identify the basic strategy employed by the noMoRe system and justify its algorithmic approach. Furthermore, we distinguish operations corresponding to Fitting's operator as well as to well-founded semantics Y1 - 2006 UR - http://www.cs.kuleuven.ac.be/~dtai/projects/ALP//TPLP/ U6 - https://doi.org/10.1017/S1471068405002528 SN - 1471-0684 ER - TY - BOOK A1 - Hüttenrauch, Stefan A1 - Kylau, Uwe A1 - Grund, Martin A1 - Queck, Tobias A1 - Ploskonos, Anna A1 - Schreiter, Torben A1 - Breest, Martin A1 - Haubrock, Sören A1 - Bouche, Paul T1 - Fundamentals of Service-Oriented Engineering BT - Proceedings of the Fall 2006 Workshop of the HPI Research School on Service-Oriented Systems Engineering T3 - Technische Berichte des Hasso-Plattner-Instituts für Softwaresystemtechnik an der Universität Potsdam Y1 - 2006 SN - 3-939469-35-1 SN - 1613-5652 VL - 18 PB - Universitätsverlag Potsdam CY - Potsdam ER - TY - JOUR A1 - Gebser, Martin A1 - Schaub, Torsten H. A1 - Thiele, Sven T1 - GrinGo : a new grounder for answer set programming Y1 - 2007 SN - 978-3-540- 72199-4 ER - TY - BOOK A1 - Kuropka, Dominik A1 - Meyer, Harald T1 - Survey on service composition T3 - Technische Berichte des Hasso-Plattner-Instituts für Softwaresystemtechnik an der Universität Potsda Y1 - 2005 SN - 3-937786-78-3 SN - 1613-5652 VL - 10 PB - Universitätsverlag Potsdam CY - Potsdam ER - TY - JOUR A1 - Konczak, Kathrin A1 - Vogel, Ralf T1 - Abduction and Preferences in Linguistics Y1 - 2005 UR - http://www.cs.uni-potsdam.de/~konczak/Papers/konvog05a.pdf ER - TY - JOUR A1 - Calude, C. S. A1 - Jurgensen, Helmut T1 - Is complexity a source of incompleteness? N2 - In this paper we prove Chaitin's "heuristic principle," the theorems of a finitely-specified theory cannot be significantly more complex than the theory itself, for an appropriate measure of complexity. We show that the measure is invariant under the change of the Godel numbering. For this measure, the theorems of a finitely-specified, sound, consistent theory strong enough to formalize arithmetic which is arithmetically sound (like Zermelo-Fraenkel set theory with choice or Peano Arithmetic) have bounded complexity, hence every sentence of the theory which is significantly more complex than the theory is unprovable. Previous results showing that incompleteness is not accidental, but ubiquitous are here reinforced in probabilistic terms: the probability that a true sentence of length n is provable in the theory tends to zero when n tends to infinity, while the probability that a sentence of length n is true is strictly positive. (c) 2004 Elsevier Inc. All rights reserved Y1 - 2005 SN - 0196-8858 ER - TY - JOUR A1 - Bordihn, Henning T1 - On the number of components in cooperating distributed grammar systems N2 - It is proved that the number of components in context-free cooperating distributed (CD) grammar systems can be reduced to 3 when they are working in the so-called sf-mode of derivation, which is the cooperation protocol which has been considered first for CD grammar systems. In this derivation mode, a component continues the derivation until and unless there is a nonterminal in the sentential form which cannot be rewritten according to that component. Moreover, it is shown that CD grammar systems in sf-mode with only one component can generate only the context-free languages but they can generate non-context-free languages if two components are used. The sf-mode of derivation is compared with other well-known cooperation protocols with respect to the hierarchies induced by the number of components. (C) 2004 Elsevier B.V. All rights reserved Y1 - 2005 SN - 0304-3975 ER - TY - JOUR A1 - Beerenwinkel, Niko A1 - Sing, Tobias A1 - Lengauer, Thomas A1 - Rahnenfuhrer, Joerg A1 - Roomp, Kirsten A1 - Savenkov, Igor A1 - Fischer, Roman A1 - Hoffmann, Daniel A1 - Selbig, Joachim A1 - Korn, Klaus A1 - Walter, Hauke A1 - Berg, Thomas A1 - Braun, Patrick A1 - Faetkenheuer, Gerd A1 - Oette, Mark A1 - Rockstroh, Juergen A1 - Kupfer, Bernd A1 - Kaiser, Rolf A1 - Daeumer, Martin T1 - Computational methods for the design of effective therapies against drug resistant HIV strains N2 - The development of drug resistance is a major obstacle to successful treatment of HIV infection. The extraordinary replication dynamics of HIV facilitates its escape from selective pressure exerted by the human immune system and by combination drug therapy. We have developed several computational methods whose combined use can support the design of optimal antiretroviral therapies based on viral genomic data Y1 - 2005 ER - TY - JOUR A1 - Brzozowski, J. A. A1 - Jürgensen, Helmut T1 - Representation of semiautomata by canonical words and equivalences N2 - We study a novel representation of semiautomata, which is motivated by the method of trace-assertion specifications of software modules. Each state of the semiautomaton is represented by an arbitrary word leading to that state, the canonical word. The transitions of the semiautomaton give rise to a right congruence, the state-equivalence, on the set of input words of the semiautomaton: two words are state-equivalent if and only if they lead to the same state. We present a simple algorithm for finding a set of generators for state-equivalence. Directly from this set of generators, we construct a confluent prefix-rewriting system which permits us to transform any word to its canonical representative. In general, the rewriting system may allow infinite derivations. To address this issue, we impose the condition of prefix-continuity on the set of canonical words. A set is prefix-continuous if, whenever a word w and a prefix u of w axe in the set, then all the prefixes of w longer than u are also in the set. Prefix-continuous sets include prefix-free and prefix-closed sets as special cases. We prove that the rewriting system is Noetherian if and only if the set of canonical words is prefix-continuous. Furthermore, if the set of canonical words is prefix- continuous, then the set of rewriting rules is irredundant. We show that each prefix-continuous canonical set corresponds to a spanning forest of the semiautomaton Y1 - 2005 SN - 0129-0541 ER -