TY - JOUR A1 - Schmidt, G. A1 - Zamora-Lopez, Gorka A1 - Kurths, Jürgen T1 - Simulation of large scale cortical networks by individual neuron dynamics N2 - Understanding the functional dynamics of the mammalian brain is one of the central aims of modern neuroscience. Mathematical modeling and computational simulations of neural networks can help in this quest. In recent publications, a multilevel model has been presented to simulate the resting-state dynamics of the cortico-cortical connectivity of the mammalian brain. In the present work we investigate how much of the dynamical behavior of the multilevel model can be reproduced by a strongly simplified model. We find that replacing each cortical area by a single Rulkov map recreates the patterns of dynamical correlation of the multilevel model, while the outcome of other models and setups mainly depends on the local network properties, e. g. the input degree of each vertex. In general, we find that a simple simulation whose dynamics depends on the global topology of the whole network is far from trivial. A systematic analysis of different dynamical models and coupling setups is required. Y1 - 2010 U6 - https://doi.org/10.1142/S0218127410026149 SN - 0218-1274 ER - TY - THES A1 - Zamora-López, Gorka T1 - Linking structure and function of complex cortical networks T1 - Analyse der Struktur-Funktions-Beziehungen komplexer kortikaler Netzwerke N2 - The recent discovery of an intricate and nontrivial interaction topology among the elements of a wide range of natural systems has altered the manner we understand complexity. For example, the axonal fibres transmitting electrical information between cortical regions form a network which is neither regular nor completely random. Their structure seems to follow functional principles to balance between segregation (functional specialisation) and integration. Cortical regions are clustered into modules specialised in processing different kinds of information, e.g. visual or auditory. However, in order to generate a global perception of the real world, the brain needs to integrate the distinct types of information. Where this integration happens, nobody knows. We have performed an extensive and detailed graph theoretical analysis of the cortico-cortical organisation in the brain of cats, trying to relate the individual and collective topological properties of the cortical areas to their function. We conclude that the cortex possesses a very rich communication structure, composed of a mixture of parallel and serial processing paths capable of accommodating dynamical processes with a wide variety of time scales. The communication paths between the sensory systems are not random, but largely mediated by a small set of areas. Far from acting as mere transmitters of information, these central areas are densely connected to each other, strongly indicating their functional role as integrators of the multisensory information. In the quest of uncovering the structure-function relationship of cortical networks, the peculiarities of this network have led us to continuously reconsider the stablished graph measures. For example, a normalised formalism to identify the “functional roles” of vertices in networks with community structure is proposed. The tools developed for this purpose open the door to novel community detection techniques which may also characterise the overlap between modules. The concept of integration has been revisited and adapted to the necessities of the network under study. Additionally, analytical and numerical methods have been introduced to facilitate understanding of the complicated statistical interrelations between the distinct network measures. These methods are helpful to construct new significance tests which may help to discriminate the relevant properties of real networks from side-effects of the evolutionary-growth processes. N2 - Die jüngste Entdeckung einer komplexen und nicht-trivialen Interaktionstopologie zwischen den Elementen einer großen Anzahl natürlicher Systeme hat die Art und Weise verändert, wie wir Komplexität verstehen. So bilden zum Beispiel die Nervenfasern, welche Informationen zwischen Regionen des Kortex übermitteln, ein Netzwerk, das weder vollkommen regelmäßig noch völlig zufallig ist. Die Struktur dieser Netzwerke scheint Funktionsprinzipien zu folgen, die ein Gleichgewicht zwischen Segregation (funktionale Spezialisierung) und Integration (Verarbeitung von Informationen) halten. Die Regionen des Kortex sind in Module gegliedert, welche auf die Verarbeitung unterschiedlicher Arten von Informationen, wie beispielsweise Visuelle oder Auditive, spezialisiert sind. Um eine umfassende Vorstellung von der Realität zu erzeugen, muss das Gehirn verschiedene Informationsarten kombinieren (integrieren). Wo diese Integration jedoch geschieht, ist noch ungeklärt. In dieser Dissertation wurde eine weitreichende und detaillierte graphen- theoretische Analyse der kortiko-kortikalen Organisation des Katzengehirns durchgeführt. Dabei wurde der Versuch unternommen, individuelle sowie kollektive topologische Eigenschaften der Kortexareale zu ihrer Funktion in Beziehung zu setzen. Aus der Untersuchung wird geschlussfolgert, dass der Kortex eine äußerst reichhaltige Kommunikationsstruktur aufweist, die aus einer Mischung von parallelen und seriellen übertragungsbahnen besteht, die es ermöglichen dynamische Prozesse auf vielen verschiedenen Zeitskalen zu tragen. Die Kommunikationsbahnen zwischen den sensorischen Systemen sind nicht zufällig verteilt, sondern verlaufen fast alle durch eine geringe Anzahl von Arealen. Diese zentralen Areale agieren nicht allein als übermittler von Informationen. Sie sind dicht untereinander verbunden, was auf ihre Funktion als Integrator hinweist. Bei der Analyse der Struktur-Funktions-Beziehungen kortikaler Netzwerke wurden unter Berucksichtigung der Besonderheiten des untersuchten Netzwerkes die bisher verwandten Graphenmaße überdacht und zum Teil überarbeitet. So wurde beispielsweise ein normalisierter Formalismus vorgeschlagen, um die funktionalen Rollen der Knoten in Netzwerken mit einer Community-Struktur zu identifizieren. Die für diesen Zweck entwickelten Werkzeuge ermöglichen neue Methoden zur Erkennung dieser Strukturen, die möglicherweise auch die überlappung von Modulen beschreiben. Das Konzept der Integration wurde revidiert und den Bedürfnissen des untersuchten Netzwerkes angepasst. Außerdem wurden analytische und numerische Methoden eingeführt, um das Verständnis des komplizierten statistischen Zusammenhangs zwischen den verschiedenen Netzwerkmaßen zu erleichtern. Diese Methoden sind hilfreich für die Konstruktion neuer Signifikanztests, die relevante Eigenschaften realer Netzwerke von Nebeneffekten ihrer evolutionären Wachstumsprozesse unterscheiden können. KW - komplexe Netzwerke KW - kortikale Netzwerke KW - complex networks KW - cortical networks Y1 - 2009 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:kobv:517-opus-52257 ER - TY - JOUR A1 - Gomez-Gardeñes, Jesús A1 - Zamora-Lopez, Gorka A1 - Moreno, Yamir A1 - Arenas, Alexandre T1 - From modular to centralized organization of synchronization in functional areas of the cat cerebral cortex N2 - Recent studies have pointed out the importance of transient synchronization between widely distributed neural assemblies to understand conscious perception. These neural assemblies form intricate networks of neurons and synapses whose detailed map for mammals is still unknown and far from our experimental capabilities. Only in a few cases, for example the C. elegans, we know the complete mapping of the neuronal tissue or its mesoscopic level of description provided by cortical areas. Here we study the process of transient and global synchronization using a simple model of phase-coupled oscillators assigned to cortical areas in the cerebral cat cortex. Our results highlight the impact of the topological connectivity in the developing of synchronization, revealing a transition in the synchronization organization that goes from a modular decentralized coherence to a centralized synchronized regime controlled by a few cortical areas forming a Rich-Club connectivity pattern. Y1 - 2010 UR - http://www.pubmedcentral.nih.gov/tocrender.fcgi?action=archive&journal=440 U6 - https://doi.org/10.1371/journal.pone.0012313 SN - 1932-6203 ER - TY - JOUR A1 - Arenas, Alexandre A1 - Borge-Holthoefer, Javier A1 - Gomez, Sergio A1 - Zamora-Lopez, Gorka T1 - Optimal map of the modular structure of complex networks N2 - The modular structure is pervasive in many complex networks of interactions observed in natural, social and technological sciences. Its study sheds light on the relation between the structure and the function of complex systems. Generally speaking, modules are islands of highly connected nodes separated by a relatively small number of links. Every module can have the contributions of links from any node in the network. The challenge is to disentangle these contributions to understand how the modular structure is built. The main problem is that the analysis of a certain partition into modules involves, in principle, as much data as the number of modules times the number of nodes. To confront this challenge, here we first define the contribution matrix, the mathematical object containing all the information about the partition of interest, and then we use truncated singular value decomposition to extract the best representation of this matrix in a plane. The analysis of this projection allows us to scrutinize the skeleton of the modular structure, revealing the structure of individual modules and their interrelations. Y1 - 2010 UR - http://iopscience.iop.org/1367-2630 U6 - https://doi.org/10.1088/1367-2630/12/5/053009 SN - 1367-2630 ER - TY - JOUR A1 - Zamora-Lopez, Gorka A1 - Zhou, Changsong A1 - Kurths, Jürgen T1 - Graph analysis of cortical networks reveals complex anatomical communication substrate N2 - Sensory information entering the nervous system follows independent paths of processing such that specific features are individually detected. However, sensory perception, awareness, and cognition emerge from the combination of information. Here we have analyzed the corticocortical network of the cat, looking for the anatomical substrate which permits the simultaneous segregation and integration of information in the brain. We find that cortical communications are mainly governed by three topological factors of the underlying network: (i) a large density of connections, (ii) segregation of cortical areas into clusters, and (iii) the presence of highly connected hubs aiding the multisensory processing and integration. Statistical analysis of the shortest paths reveals that, while information is highly accessible to all cortical areas, the complexity of cortical information processing may arise from the rich and intricate alternative paths in which areas can influence each other. Y1 - 2009 UR - http://ojps.aip.org/chaos/ U6 - https://doi.org/10.1063/1.3089559 SN - 1054-1500 ER -